Origin IGS: gaatctattataccataagctaaacgtttcaaattagctcttacagtatttaaaaacaatatgtggggaatagatttatattctatagtgcaataacttgtacttagagagcattgccacctttttttaccactccatgacatcaaaagtatttaatggatcagacataatagccagttctggaagatgttcctgacctggaataacacattgactttttaaacttttataattaattcctttcgtttcactcaaggcacaacacagaatgaaaaagtgttgtgctctttattttgttttataataatagcgagaaagcctatcactactacaaatcacggggtggtgaataagtgagtggtatagtcactacctcgcatttttataggtgtcattctttccatcaagcacaactgactgtgactaggagcacgtaaacttataattgaataagcgactcgtttgtgaaaggaaaggatagccaagggatcggcagactcaaatttggtgaaaggagagccctcgtgttaaaaattatttatcctaattgttgtggtgaagaatagcatttagatttctatttctaatcgtccaaaatgcgtgtttttgaaaaataaaaaaccgcaagacagagtctgcggtggggataatctattttgaaattttaaataaaaaaggagcatttaagcccctcctttgaaataacggacatttggctggtcggtgtacccagcatctcagataccttcttcaaggtgcggcaggaacctttctgccctcaaatgtctttcgttaatgttattctagcactatctatttttttgtcaagctttctcaat .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 attgagaaagcttgacaaaaaaatagatagtgctagaataacattaacgaaagacatttgagggcagaaaggttcctgccgcaccttgaagaaggtatctgagatgctgggtacaccgaccagccaaatgtccgttatttcaaaggaggggcttaaatgctccttttttatttaaaatttcaaaatagattatccccaccgcagactctgtcttgcggttttttatttttcaaaaacacgcattttggacgattagaaatagaaatctaaatgctattcttcaccacaacaattaggataaataatttttaacacgagggctctcctttcaccaaatttgagtctgccgatcccttggctatcctttcctttcacaaacgagtcgcttattcaattataagtttacgtgctcctagtcacagtcagttgtgcttgatggaaagaatgacacctataaaaatgcgaggtagtgactataccactcacttattcaccaccccgtgatttgtagtagtgataggctttctcgctattattataaaacaaaataaagagcacaacactttttcattctgtgttgtgccttgagtgaaacgaaaggaattaattataaaagtttaaaaagtcaatgtgttattccaggtcaggaacatcttccagaactggctattatgtctgatccattaaatacttttgatgtcatggagtggtaaaaaaaggtggcaatgctctctaagtacaagttattgcactatagaatataaatctattccccacatattgtttttaaatactgtaagagctaatttgaaacgtttagcttatggtataatagattc Mask Tandem Repeat Region ================================================ gaatctattataccataagctaaacgtttcaaattagctcttacagtatttaaaaacaatatgtggggaatagatttatattctatagtgcaataacttgtacttagagagcattgccacctttttttaccactccatgacatcaaaagtatttaatggatcagacataatagccagttctggaagatgttcctgacctggaataacacattgactttttaaacttttataattaattcctttcgtttcactcaaggcacaacacagaatgaaaaagtgttgtgctctttattttgttttataataatagcgagaaagcctatcactactacaaatcacggggtggtgaataagtgagtggtatagtcactacctcgcatttttataggtgtcattctttccatcaagcacaactgactgtgactaggagcacgtaaacttataattgaataagcgactcgtttgtgaaaggaaaggatagccaagggatcggcagactcaaatttggtgaaaggagagccctcgtgttaaaaattatttatcctaattgttgtggtgaagaatagcatttagatttctatttctaatcgtccaaaatgcgtgtttttgaaaaataaaaaaccgcaagacagagtctgcggtggggataatctattttgaaattttaaataaaaaaggagcatttaagcccctcctttgaaataacggacatttggctggtcggtgtacccagcatctcagataccttcttcaaggtgcggcaggaacctttctgccctcaaatgtctttcgttaatgttattctagcactatctatttttttgtcaagctttctcaat Find is-nt database================================================ Query_seq: SMT_1427:SMT_1428|SMT_1427:SMT_1428:S1 RNA binding domain protein:hypothetical protein predicted by Glimmer/Critica:<-<-:1413520..1414358 839 gaatctattataccataagctaaacgtttcaaattagctcttacagtatttaaaaacaatatgtggggaatagatttatattctatagtgcaataacttgtacttagagagcattgccacctttttttaccactccatgacatcaaaagtatttaatggatcagacataatagccagttctggaagatgttcctgacctggaataacacattgactttttaaacttttataattaattcctttcgtttcactcaaggcacaacacagaatgaaaaagtgttgtgctctttattttgttttataataatagcgagaaagcctatcactactacaaatcacggggtggtgaataagtgagtggtatagtcactacctcgcatttttataggtgtcattctttccatcaagcacaactgactgtgactaggagcacgtaaacttataattgaataagcgactcgtttgtgaaaggaaaggatagccaagggatcggcagactcaaatttggtgaaaggagagccctcgtgttaaaaattatttatcctaattgttgtggtgaagaatagcatttagatttctatttctaatcgtccaaaatgcgtgtttttgaaaaataaaaaaccgcaagacagagtctgcggtggggataatctattttgaaattttaaataaaaaaggagcatttaagcccctcctttgaaataacggacatttggctggtcggtgtacccagcatctcagataccttcttcaaggtgcggcaggaacctttctgccctcaaatgtctttcgttaatgttattctagcactatctatttttttgtcaagctttctcaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1427:SMT_1428|SMT_1427:SMT_1428:S1 RNA binding domain protein:hypothetical protein predicted by Glimmer/Critica:<-<-:1413520..1414358 839 gaatctattataccataagctaaacgtttcaaattagctcttacagtatttaaaaacaatatgtggggaatagatttatattctatagtgcaataacttgtacttagagagcattgccacctttttttaccactccatgacatcaaaagtatttaatggatcagacataatagccagttctggaagatgttcctgacctggaataacacattgactttttaaacttttataattaattcctttcgtttcactcaaggcacaacacagaatgaaaaagtgttgtgctctttattttgttttataataatagcgagaaagcctatcactactacaaatcacggggtggtgaataagtgagtggtatagtcactacctcgcatttttataggtgtcattctttccatcaagcacaactgactgtgactaggagcacgtaaacttataattgaataagcgactcgtttgtgaaaggaaaggatagccaagggatcggcagactcaaatttggtgaaaggagagccctcgtgttaaaaattatttatcctaattgttgtggtgaagaatagcatttagatttctatttctaatcgtccaaaatgcgtgtttttgaaaaataaaaaaccgcaagacagagtctgcggtggggataatctattttgaaattttaaataaaaaaggagcatttaagcccctcctttgaaataacggacatttggctggtcggtgtacccagcatctcagataccttcttcaaggtgcggcaggaacctttctgccctcaaatgtctttcgttaatgttattctagcactatctatttttttgtcaagctttctcaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1427:SMT_1428|SMT_1427:SMT_1428:S1 RNA binding domain protein:hypothetical protein predicted by Glimmer/Critica:<-<-:1413520..1414358 839 gaatctattataccataagctaaacgtttcaaattagctcttacagtatttaaaaacaatatgtggggaatagatttatattctatagtgcaataacttgtacttagagagcattgccacctttttttaccactccatgacatcaaaagtatttaatggatcagacataatagccagttctggaagatgttcctgacctggaataacacattgactttttaaacttttataattaattcctttcgtttcactcaaggcacaacacagaatgaaaaagtgttgtgctctttattttgttttataataatagcgagaaagcctatcactactacaaatcacggggtggtgaataagtgagtggtatagtcactacctcgcatttttataggtgtcattctttccatcaagcacaactgactgtgactaggagcacgtaaacttataattgaataagcgactcgtttgtgaaaggaaaggatagccaagggatcggcagactcaaatttggtgaaaggagagccctcgtgttaaaaattatttatcctaattgttgtggtgaagaatagcatttagatttctatttctaatcgtccaaaatgcgtgtttttgaaaaataaaaaaccgcaagacagagtctgcggtggggataatctattttgaaattttaaataaaaaaggagcatttaagcccctcctttgaaataacggacatttggctggtcggtgtacccagcatctcagataccttcttcaaggtgcggcaggaacctttctgccctcaaatgtctttcgttaatgttattctagcactatctatttttttgtcaagctttctcaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gaatctattataccataagctaaacgtttcaaattagctcttacagtatttaaaaacaatatgtggggaatagatttatattctatagtgcaataacttgtacttagagagcattgccacctttttttaccactccatgacatcaaaagtatttaatggatcagacataatagccagttctggaagatgttcctgacctggaataacacattgactttttaaacttttataattaattcctttcgtttcactcaaggcacaacacagaatgaaaaagtgttgtgctctttattttgttttataataatagcgagaaagcctatcactactacaaatcacggggtggtgaataagtgagtggtatagtcactacctcgcatttttataggtgtcattctttccatcaagcacaactgactgtgactaggagcacgtaaacttataattgaataagcgactcgtttgtgaaaggaaaggatagccaagggatcggcagactcaaatttggtgaaaggagagccctcgtgttaaaaattatttatcctaattgttgtggtgaagaatagcatttagatttctatttctaatcgtccaaaatgcgtgtttttgaaaaataaaaaaccgcaagacagagtctgcggtggggataatctattttgaaattttaaataaaaaaggagcatttaagcccctcctttgaaataacggacatttggctggtcggtgtacccagcatctcagataccttcttcaaggtgcggcaggaacctttctgccctcaaatgtctttcgttaatgttattctagcactatctatttttttgtcaagctttctcaat Predict ORF larger than 30AA ================================================ Protein_Len: 32 Strand: + Start: 98 End: 193 ................................................................................................. M Y L E S I A T F F Y H S M T S K V F N G S D I I A S S G R C S ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 42 Strand: + Start: 229 End: 354 .................................................................................................................................................................................................................................... M I N S F R F T Q G T T Q N E K V L C S L F C F I I I A R K P I T T T N H G V V N K ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 38 Strand: + Start: 450 End: 563 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M S D S F V K G K D S Q G I G R L K F G E R R A L V L K I I Y P N C C G E E .................................................................................................................................................................................................................................................................................... Protein_Len: 57 Strand: + Start: 669 End: 839 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M K K E H L S P S F E I T D I W L V G V P S I S D T F F K V R Q E P F C P Q M S F V N V I L A L S I F L S S F L N Protein_Len: 37 Strand: - Start: 573 End: 683 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ I E I E L R G F H T N K F F L F G C S L T Q P P S L R N Q F K L Y F L L M ............................................................................................................................................................ Protein_Len: 35 Strand: - Start: 547 End: 651 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. N N H H L I A N L N R N R I T W F A H K Q F I F F R L V S D A T P I M ............................................................................................................................................................................................ Protein_Len: 32 Strand: - Start: 443 End: 538 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................... L Q I L S E N T F P F S L W P I P L S L N P S L L A R T N F I M ............................................................................................................................................................................................................................................................................................................. Protein_Len: 49 Strand: - Start: 339 End: 485 .................................................................................................................................................................................................................................................................................................................................................. P T T F L H T T Y D S G R M K I P T M R E M L C L Q S H S P A R L S I I S Y A V R K H F S L I A M .................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 47 Strand: - Start: 130 End: 270 ................................................................................................................................. W E M V D F T N L P D S M I A L E P L H E Q G P I V C Q S K L S K Y N I G K T E S L A C C L M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 50 Strand: - Start: 3 End: 152 .. D I I G Y A L R K L N A R V T N L F L I H P I S K Y E I T C Y S T S L S C Q W R K K G S W S M L L M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... gaatctattataccataagctaaacgtttcaaattagctcttacagtatttaaaaacaatatgtggggaatagatttatattctatagtgcaataacttgtacttagagagcattgccacctttttttaccactccatgacatcaaaagtatttaatggatcagacataatagccagttctggaagatgttcctgacctggaataacacattgactttttaaacttttataattaattcctttcgtttcactcaaggcacaacacagaatgaaaaagtgttgtgctctttattttgttttataataatagcgagaaagcctatcactactacaaatcacggggtggtgaataagtgagtggtatagtcactacctcgcatttttataggtgtcattctttccatcaagcacaactgactgtgactaggagcacgtaaacttataattgaataagcgactcgtttgtgaaaggaaaggatagccaagggatcggcagactcaaatttggtgaaaggagagccctcgtgttaaaaattatttatcctaattgttgtggtgaagaatagcatttagatttctatttctaatcgtccaaaatgcgtgtttttgaaaaataaaaaaccgcaagacagagtctgcggtggggataatctattttgaaattttaaataaaaaaggagcatttaagcccctcctttgaaataacggacatttggctggtcggtgtacccagcatctcagataccttcttcaaggtgcggcaggaacctttctgccctcaaatgtctttcgttaatgttattctagcactatctatttttttgtcaagctttctcaat Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gaatctattataccataagctaaacgtttcaaattagctcttacagtatttaaaaacaatatgtggggaatagatttatattctatagtgcaataacttgtacttagagagcattgccacctttttttaccactccatgacatcaaaagtatttaatggatcagacataatagccagttctggaagatgttcctgacctggaataacacattgactttttaaacttttataattaattcctttcgtttcactcaaggcacaacacagaatgaaaaagtgttgtgctctttattttgttttataataatagcgagaaagcctatcactactacaaatcacggggtggtgaataagtgagtggtatagtcactacctcgcatttttataggtgtcattctttccatcaagcacaactgactgtgactaggagcacgtaaacttataattgaataagcgactcgtttgtgaaaggaaaggatagccaagggatcggcagactcaaatttggtgaaaggagagccctcgtgttaaaaattatttatcctaattgttgtggtgaagaatagcatttagatttctatttctaatcgtccaaaatgcgtgtttttgaaaaataaaaaaccgcaagacagagtctgcggtggggataatctattttgaaattttaaataaaaaaggagcatttaagcccctcctttgaaataacggacatttggctggtcggtgtacccagcatctcagataccttcttcaaggtgcggcaggaacctttctgccctcaaatgtctttcgttaatgttattctagcactatctatttttttgtcaagctttctcaat Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 66 HP_score: -2.4 Tail_Score: -5.06411 Start: 256 End: 287 Full_Region: TTTCGTTTCACTCAA GGCACAACAC AGAATGAAAAA GTGTTGTGCTC TTTATTTTGTTTTAT ...............................................................................................................................................................................................................................................................GGCACAACACAGAATGAAAAAGTGTTGTGCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 43 HP_score: -2.6 Tail_Score: -3.05384 Start: 256 End: 286 Full_Region: taaaacaaaataaag agcacaacac tttttcattct gtgttgtgcc ttgagtgaaacgaaa ...............................................................................................................................................................................................................................................................agcacaacactttttcattctgtgttgtgcc......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 67 HP_score: -6.1 Tail_Score: -4.10507 Start: 257 End: 285 Full_Region: TTCGTTTCACTCAAG GCACAACAC AGAATGAAAAA GTGTTGTGC TCTTTATTTTGTTTT ................................................................................................................................................................................................................................................................GCACAACACAGAATGAAAAAGTGTTGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 43 HP_score: -3.2 Tail_Score: -2.7119 Start: 339 End: 377 Full_Region: CACTACTACAAATCA CGGGGTGGTGAATA AGTGAGTGGTA TAGTCACTACCTCG CATTTTTATAGGTGT ..................................................................................................................................................................................................................................................................................................................................................CGGGGTGGTGAATAAGTGAGTGGTATAGTCACTACCTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 100 HP_score: -8.6 Tail_Score: -5.93252 Start: 622 End: 641 Full_Region: aatagattatcccca ccgcagac tct gtcttgcgg ttttttatttttcaa .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ccgcagactctgtcttgcgg...................................................................................................................................................................................................... TransTerm Strand: - Conf: 85 HP_score: -3.9 Tail_Score: -5.64421 Start: 677 End: 692 Full_Region: cgttatttcaaagga ggggc ttaaat gctcc ttttttatttaaaat ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggggcttaaatgctcc................................................................................................................................................... Find igs database================================================ Query_seq: SMT_1427:SMT_1428|SMT_1427:SMT_1428:S1 RNA binding domain protein:hypothetical protein predicted by Glimmer/Critica:<-<-:1413520..1414358 839 gaatctattataccataagctaaacgtttcaaattagctcttacagtatttaaaaacaatatgtggggaatagatttatattctatagtgcaataacttgtacttagagagcattgccacctttttttaccactccatgacatcaaaagtatttaatggatcagacataatagccagttctggaagatgttcctgacctggaataacacattgactttttaaacttttataattaattcctttcgtttcactcaaggcacaacacagaatgaaaaagtgttgtgctctttattttgttttataataatagcgagaaagcctatcactactacaaatcacggggtggtgaataagtgagtggtatagtcactacctcgcatttttataggtgtcattctttccatcaagcacaactgactgtgactaggagcacgtaaacttataattgaataagcgactcgtttgtgaaaggaaaggatagccaagggatcggcagactcaaatttggtgaaaggagagccctcgtgttaaaaattatttatcctaattgttgtggtgaagaatagcatttagatttctatttctaatcgtccaaaatgcgtgtttttgaaaaataaaaaaccgcaagacagagtctgcggtggggataatctattttgaaattttaaataaaaaaggagcatttaagcccctcctttgaaataacggacatttggctggtcggtgtacccagcatctcagataccttcttcaaggtgcggcaggaacctttctgccctcaaatgtctttcgttaatgttattctagcactatctatttttttgtcaagctttctcaat Intra-Species Hit: Count: 1 Min: 1 Max: 839 Len: 839 Subject: smit_SMT_1427_SMT_1428|S1 RNA binding domain protein:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1413520,1414358]|839 HSP 1 e-value: 0.0 bit: 1509.0 Len: 839 Query Start:1 Query End:839 Subject Strand: POSITIVE Subject Start: 1 Subject End: 839 gaatctattataccataagctaaacgtttcaaattagctcttacagtatttaaaaacaatatgtggggaatagatttatattctatagtgcaataacttgtacttagagagcattgccaccnnnnnnnaccactccatgacatcaaaagtatttaatggatcagacataatagccagttctggaagatgttcctgacctggaataacacattgactttttaaacttttataattaattcctttcgtttcactcaaggcacaacacagaatgaaaaagtgttgtgctctttattttgttttataataatagcgagaaagcctatcactactacaaatcacggggtggtgaataagtgagtggtatagtcactacctcgcatttttataggtgtcattctttccatcaagcacaactgactgtgactaggagcacgtaaacttataattgaataagcgactcgtttgtgaaaggaaaggatagccaagggatcggcagactcaaatttggtgaaaggagagccctcgtgttaaaaattatttatcctaattgttgtggtgaagaatagcatttagatttctatttctaatcgtccaaaatgcgtgtttttgnnnnnnnnnnnnccgcaagacagagtctgcggtggggataatctattttgaaattttaaataaaaaaggagcatttaagcccctcctttgaaataacggacatttggctggtcggtgtacccagcatctcagataccttcttcaaggtgcggcaggaacctttctgccctcaaatgtctttcgttaatgttattctagcactatctannnnnnngtcaagctttctcaat gaatctattataccataagctaaacgtttcaaattagctcttacagtatttaaaaacaatatgtggggaatagatttatattctatagtgcaataacttgtacttagagagcattgccacctttttttaccactccatgacatcaaaagtatttaatggatcagacataatagccagttctggaagatgttcctgacctggaataacacattgactttttaaacttttataattaattcctttcgtttcactcaaggcacaacacagaatgaaaaagtgttgtgctctttattttgttttataataatagcgagaaagcctatcactactacaaatcacggggtggtgaataagtgagtggtatagtcactacctcgcatttttataggtgtcattctttccatcaagcacaactgactgtgactaggagcacgtaaacttataattgaataagcgactcgtttgtgaaaggaaaggatagccaagggatcggcagactcaaatttggtgaaaggagagccctcgtgttaaaaattatttatcctaattgttgtggtgaagaatagcatttagatttctatttctaatcgtccaaaatgcgtgtttttgaaaaataaaaaaccgcaagacagagtctgcggtggggataatctattttgaaattttaaataaaaaaggagcatttaagcccctcctttgaaataacggacatttggctggtcggtgtacccagcatctcagataccttcttcaaggtgcggcaggaacctttctgccctcaaatgtctttcgttaatgttattctagcactatctatttttttgtcaagctttctcaat Inter-species Hit: Count: 5 Min: 226 Max: 363 Len: 138 Subject: NC_003028_SP_0596_SP_0598|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[565133,565788]|656 HSP 1 e-value: 4.0E-60 bit: 234.0 Len: 138 Query Start:226 Query End:363 Subject Strand: NEGATIVE Subject Start: 7 Subject End: 144 .................................................................................................................................................................................................................................tttataattaattcctttcgtttcactcaaggcacaacacagaatgaaaaagtgttgtgctctttattttgttttataataatagcgagaaagcctatcactactacaaatcacggggtggtgaataagtgagtggta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ .................................................................................................................................................................................................................................tttataattcattcctttcgtttcactcaaggcacaacacagaatgaaaaagtgttgtgatctttattttgttttataataatagtgagaaaacctatcactactacaaatcacggggaggtgaataagtgagtggta............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: NC_008767_NMC1199_NMC1200|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1176807,1176919]|113 HSP 1 e-value: 1.0E-35 bit: 153.0 Len: 101 Query Start:238 Query End:338 Subject Strand: POSITIVE Subject Start: 13 Subject End: 113 .............................................................................................................................................................................................................................................tcctttcgtttcactcaaggcacaacacagaatgaaaaagtgttgtgctctttattttgttttataataatagcgagaaagcctatcactactacaaatca..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................tcctttcgtttcactcaaggcacaacacagaatgaaaaagtgttgtgctctttattttgatttattatagaaatgagaaagcctatcactactacaaatca..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_003116_NMA1473_NMA1474|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1367333,1367445]|113 HSP 1 e-value: 1.0E-35 bit: 153.0 Len: 101 Query Start:238 Query End:338 Subject Strand: POSITIVE Subject Start: 13 Subject End: 113 .............................................................................................................................................................................................................................................tcctttcgtttcactcaaggcacaacacagaatgaaaaagtgttgtgctctttattttgttttataataatagcgagaaagcctatcactactacaaatca..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................tcctttcgtttcactcaaggcacaacacagaatgaaaaagtgttgtgctctttattttgatttattatataaatgagaaagcctatcactactacaaatca..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_003112_NMB1268_NMB1269|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1278387,1278499]|113 HSP 1 e-value: 1.0E-35 bit: 153.0 Len: 101 Query Start:238 Query End:338 Subject Strand: POSITIVE Subject Start: 13 Subject End: 113 .............................................................................................................................................................................................................................................tcctttcgtttcactcaaggcacaacacagaatgaaaaagtgttgtgctctttattttgttttataataatagcgagaaagcctatcactactacaaatca..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................tcctttcgtttcactcaaggcacaacacagaatgaaaaagtgttgtgctctttattttgatttattatataaatgagaaagcctatcactactacaaatca..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_002946_NGO0539_NGO0541|hypothetical protein:putative low-molecular weight phosphotyrosine protein phosphatase|POSITIVE:POSITIVE|[514003,515355]|1353 HSP 1 e-value: 1.0E-35 bit: 153.0 Len: 101 Query Start:238 Query End:338 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 101 .............................................................................................................................................................................................................................................tcctttcgtttcactcaaggcacaacacagaatgaaaaagtgttgtgctctttattttgttttataataatagcgagaaagcctatcactactacaaatca..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................tcctttcgtttcactcaaggcacaacacagaatgaaaaagtgttgtgctctttattttgatttattatagaaatgagaaagcctatcactactacaaatca..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUAUAAUUAAUUCCUUUCGUUUCACUCAAGGCACAACACAGAAUGAAAAAGUGUUGUGCUCUUUAUUUUGUUUUAUAAUAAUAGCGAGAAAGCCUAUCACUACUACAAAUCACGGGGUGGUGAAUAAGUGAGUGGUA ......................(((((((.((((((((((...........)))))))))).....(((((((..........))))))).......(((((((..(.......)..))))))).....))))))).. (-34.40) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UACCACUCACUUAUUCACCACCCCGUGAUUUGUAGUAGUGAUAGGCUUUCUCGCUAUUAUUAUAAAACAAAAUAAAGAGCACAACACUUUUUCAUUCUGUGUUGUGCCUUGAGUGAAACGAAAGGAAUUAAUUAUAAA ...(((((......((((......))))(((((.((((((((((.(......)))))))))))...)))))...(((.(((((((((...........)))))))))))))))))...(....).............. (-34.50) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 294 110 61 216 175 smit:SMT_1194|5end_phosphoribosylformylglycinamidine_cyclo-ligase_1153171..1153401_NEGATIVE 292 125 84 108 59 smit:SMT_1775|5end_K07478_putative_ATPase_1751836..1752066_NEGATIVE 256 125 85 54 5 smit:SMT_1170|5end_acetyltransferase,_CysE/LacA/LpxA/NodL_family_1118126..1118356_NEGATIVE 255 64 24 59 19 smit:SMT_1962|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1895639..1895869_NEGATIVE 255 64 24 59 19 smit:SMT_823|5end_putative_mucus_binding_protein_746790..747020_NEGATIVE 250 123 82 230 181 smit:SMT_1739|5end_hypothetical_protein_1721263..1721493_POSITIVE 234 122 84 162 127 smit:SMT_1176|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1128993..1129223_NEGATIVE 233 123 91 87 54 smit:SMT_379|5end_acetyltransferase,_GNAT_family_316095..316325_POSITIVE 227 119 82 228 195 smit:SMT_1358|5end_dihydroorotate_dehydrogenase_B_1337192..1337422_NEGATIVE 225 126 81 60 10 smit:SMT_1701|5end_transcriptional_regulator,_RpiR_family_1684450..1684680_NEGATIVE 222 64 31 32 6 smit:SMT_1350|5end_multidrug_resistance_efflux_pump_1329225..1329455_NEGATIVE 220 119 72 225 182 smit:SMT_1403|5end_dihydrolipoamide_dehydrogenase_1379204..1379434_POSITIVE 220 60 15 188 140 smit:SMT_892|5end_K02023_multiple_sugar_transport_system_ATP-binding_protein_840329..840559_NEGATIVE 218 60 14 193 151 smit:SMT_1675|5end_adenylosuccinate_synthetase_1661147..1661377_NEGATIVE 217 125 91 214 177 smit:SMT_2057|5end_cell_division_protein_FtsH_1967283..1967513_NEGATIVE 217 124 84 68 26 smit:SMT_754|5end_3-dehydroquinate_synthase_659044..659274_NEGATIVE 217 125 91 214 177 smit:SMT_101|5end_cell_division_protein_32029..32259_POSITIVE 212 123 92 41 8 smit:SMT_861|5end_adenine_phosphoribosyltransferase_805705..805935_NEGATIVE 211 120 82 164 119 smit:SMT_1897|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1848858..1849088_NEGATIVE 211 118 82 156 117 smit:SMT_1407|5end_ribonuclease_HII_1386309..1386539_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 292 125 84 52 3 smit:SMT_1776|3end_K07707_two-component_system,_AgrA_family,_response_regulator_AgrA_1751892..1752042_NEGATIVE 262 94 51 72 31 smit:SMT_1094|3end_membrane_carboxypeptidase_(penicillin-binding_protein)_1034141..1034291_NEGATIVE 238 108 61 151 98 smit:SMT_398|3end_hypothetical_protein_328279..328429_POSITIVE 232 96 59 121 82 smit:SMT_603|3end_hypothetical_protein_518532..518682_POSITIVE 227 120 71 136 95 smit:SMT_1303|3end_tRNA-dihydrouridine_synthase_1264676..1264826_NEGATIVE 222 64 31 45 19 smit:SMT_1351|3end_dephospho-CoA_kinase_1329212..1329362_NEGATIVE 221 100 57 52 8 smit:SMT_1190|3end_phosphoribosylaminoimidazole_carboxylase,_catalytic_subunit_1147741..1147891_NEGATIVE 220 60 15 75 27 smit:SMT_893|3end_leucine_rich_protein_840442..840592_NEGATIVE 219 122 85 76 43 smit:SMT_458|3end_hypothetical_protein_predicted_by_Glimmer/Critica_396729..396879_NEGATIVE 217 124 84 49 7 smit:SMT_755|3end_shikimate_5-dehydrogenase_659063..659213_NEGATIVE 214 99 51 63 8 smit:SMT_540|3end_DNA_gyrase,_B_subunit_457157..457307_POSITIVE 213 100 54 78 31 smit:SMT_1217|3end_hypothetical_protein_1176166..1176316_NEGATIVE 211 120 82 145 100 smit:SMT_1898|3end_aminotransferase_(class_V),_putative_1848877..1849027_NEGATIVE 208 122 82 50 9 smit:SMT_1949|3end_IS1381_transposase_protein_B_1883987..1884137_POSITIVE 206 97 51 146 100 smit:SMT_2061|3end_K02011_iron(III)_transport_system_permease_protein_1970802..1970952_POSITIVE 206 97 51 146 100 smit:SMT_202|3end_K02011_iron(III)_transport_system_permease_protein_132173..132323_NEGATIVE 205 122 85 78 39 smit:SMT_1897|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1848766..1848916_NEGATIVE 205 95 54 50 9 smit:SMT_1470|3end_K06188_aquaporin_Z_1453266..1453416_POSITIVE 200 88 50 90 46 smit:SMT_220|3end_Hypothetical_zinc_metalloprotease_153086..153236_POSITIVE 199 97 51 134 80 smit:SMT_1371|3end_hypothetical_protein_1350579..1350729_NEGATIVE