Origin IGS: gacatactcctttccatatttttaggaccttatgaaaactaaggaactaaaggttgactcatgaaaaaagagcaggttttcacctgctctgcaatcttctgacgtttttatgtttgtttctgttgagtatgtctgttcccgatgtttcctaactctctagtagcaaatattacgtactttattgatcgtttcacaagatgacgtgtgctttcaccacactaaaaatttatgaattaggacaagtgtcctaacatcaacttataaaagtaggcttttaaccctatcaataatgtggtttttcaaccacgcttcggcattcaaccctgcctgtccgtaggcattttttactcgggtttatatttgctagaaaacatcatctcattttctaagccccattactatatcatgttttcaagaacttgtaaagcgttttacggaaaaaatataaaaaggttcgcaaaatagttagattttactcgatttaacaatgattattttcttgtaaacgattataaagtgaacgaaatgatgatagtatttaatttaaaattctttcatgccattctatactcttacccttctgtgtttgatcgattagataagatgacgacatttttacatcattagaatagtgcaacttttttcagacagttttaaaagattgatttccctatatttttcctttatactggatcaaaaggagaatagt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 actattctccttttgatccagtataaaggaaaaatatagggaaatcaatcttttaaaactgtctgaaaaaagttgcactattctaatgatgtaaaaatgtcgtcatcttatctaatcgatcaaacacagaagggtaagagtatagaatggcatgaaagaattttaaattaaatactatcatcatttcgttcactttataatcgtttacaagaaaataatcattgttaaatcgagtaaaatctaactattttgcgaacctttttatattttttccgtaaaacgctttacaagttcttgaaaacatgatatagtaatggggcttagaaaatgagatgatgttttctagcaaatataaacccgagtaaaaaatgcctacggacaggcagggttgaatgccgaagcgtggttgaaaaaccacattattgatagggttaaaagcctacttttataagttgatgttaggacacttgtcctaattcataaatttttagtgtggtgaaagcacacgtcatcttgtgaaacgatcaataaagtacgtaatatttgctactagagagttaggaaacatcgggaacagacatactcaacagaaacaaacataaaaacgtcagaagattgcagagcaggtgaaaacctgctcttttttcatgagtcaacctttagttccttagttttcataaggtcctaaaaatatggaaaggagtatgtc Mask Tandem Repeat Region ================================================ gacatactcctttccatatttttaggaccttatgaaaactaaggaactaaaggttgactcatgaaaaaagagcaggttttcacctgctctgcaatcttctgacgtttttatgtttgtttctgttgagtatgtctgttcccgatgtttcctaactctctagtagcaaatattacgtactttattgatcgtttcacaagatgacgtgtgctttcaccacactaaaaatttatgaattaggacaagtgtcctaacatcaacttataaaagtaggcttttaaccctatcaataatgtggtttttcaaccacgcttcggcattcaaccctgcctgtccgtaggcattttttactcgggtttatatttgctagaaaacatcatctcattttctaagccccattactatatcatgttttcaagaacttgtaaagcgttttacggaaaaaatataaaaaggttcgcaaaatagttagattttactcgatttaacaatgattattttcttgtaaacgattataaagtgaacgaaatgatgatagtatttaatttaaaattctttcatgccattctatactcttacccttctgtgtttgatcgattagataagatgacgacatttttacatcattagaatagtgcaacttttttcagacagttttaaaagattgatttccctatatttttcctttatactggatcaaaaggagaatagt Find is-nt database================================================ Query_seq: SMT_1418:SMT_1419|SMT_1418:SMT_1419:lysine decarboxylase:hypothetical protein:<-->:1403238..1403946 709 gacatactcctttccatatttttaggaccttatgaaaactaaggaactaaaggttgactcatgaaaaaagagcaggttttcacctgctctgcaatcttctgacgtttttatgtttgtttctgttgagtatgtctgttcccgatgtttcctaactctctagtagcaaatattacgtactttattgatcgtttcacaagatgacgtgtgctttcaccacactaaaaatttatgaattaggacaagtgtcctaacatcaacttataaaagtaggcttttaaccctatcaataatgtggtttttcaaccacgcttcggcattcaaccctgcctgtccgtaggcattttttactcgggtttatatttgctagaaaacatcatctcattttctaagccccattactatatcatgttttcaagaacttgtaaagcgttttacggaaaaaatataaaaaggttcgcaaaatagttagattttactcgatttaacaatgattattttcttgtaaacgattataaagtgaacgaaatgatgatagtatttaatttaaaattctttcatgccattctatactcttacccttctgtgtttgatcgattagataagatgacgacatttttacatcattagaatagtgcaacttttttcagacagttttaaaagattgatttccctatatttttcctttatactggatcaaaaggagaatagt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1418:SMT_1419|SMT_1418:SMT_1419:lysine decarboxylase:hypothetical protein:<-->:1403238..1403946 709 gacatactcctttccatatttttaggaccttatgaaaactaaggaactaaaggttgactcatgaaaaaagagcaggttttcacctgctctgcaatcttctgacgtttttatgtttgtttctgttgagtatgtctgttcccgatgtttcctaactctctagtagcaaatattacgtactttattgatcgtttcacaagatgacgtgtgctttcaccacactaaaaatttatgaattaggacaagtgtcctaacatcaacttataaaagtaggcttttaaccctatcaataatgtggtttttcaaccacgcttcggcattcaaccctgcctgtccgtaggcattttttactcgggtttatatttgctagaaaacatcatctcattttctaagccccattactatatcatgttttcaagaacttgtaaagcgttttacggaaaaaatataaaaaggttcgcaaaatagttagattttactcgatttaacaatgattattttcttgtaaacgattataaagtgaacgaaatgatgatagtatttaatttaaaattctttcatgccattctatactcttacccttctgtgtttgatcgattagataagatgacgacatttttacatcattagaatagtgcaacttttttcagacagttttaaaagattgatttccctatatttttcctttatactggatcaaaaggagaatagt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1418:SMT_1419|SMT_1418:SMT_1419:lysine decarboxylase:hypothetical protein:<-->:1403238..1403946 709 gacatactcctttccatatttttaggaccttatgaaaactaaggaactaaaggttgactcatgaaaaaagagcaggttttcacctgctctgcaatcttctgacgtttttatgtttgtttctgttgagtatgtctgttcccgatgtttcctaactctctagtagcaaatattacgtactttattgatcgtttcacaagatgacgtgtgctttcaccacactaaaaatttatgaattaggacaagtgtcctaacatcaacttataaaagtaggcttttaaccctatcaataatgtggtttttcaaccacgcttcggcattcaaccctgcctgtccgtaggcattttttactcgggtttatatttgctagaaaacatcatctcattttctaagccccattactatatcatgttttcaagaacttgtaaagcgttttacggaaaaaatataaaaaggttcgcaaaatagttagattttactcgatttaacaatgattattttcttgtaaacgattataaagtgaacgaaatgatgatagtatttaatttaaaattctttcatgccattctatactcttacccttctgtgtttgatcgattagataagatgacgacatttttacatcattagaatagtgcaacttttttcagacagttttaaaagattgatttccctatatttttcctttatactggatcaaaaggagaatagt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gacatactcctttccatatttttaggaccttatgaaaactaaggaactaaaggttgactcatgaaaaaagagcaggttttcacctgctctgcaatcttctgacgtttttatgtttgtttctgttgagtatgtctgttcccgatgtttcctaactctctagtagcaaatattacgtactttattgatcgtttcacaagatgacgtgtgctttcaccacactaaaaatttatgaattaggacaagtgtcctaacatcaacttataaaagtaggcttttaaccctatcaataatgtggtttttcaaccacgcttcggcattcaaccctgcctgtccgtaggcattttttactcgggtttatatttgctagaaaacatcatctcattttctaagccccattactatatcatgttttcaagaacttgtaaagcgttttacggaaaaaatataaaaaggttcgcaaaatagttagattttactcgatttaacaatgattattttcttgtaaacgattataaagtgaacgaaatgatgatagtatttaatttaaaattctttcatgccattctatactcttacccttctgtgtttgatcgattagataagatgacgacatttttacatcattagaatagtgcaacttttttcagacagttttaaaagattgatttccctatatttttcctttatactggatcaaaaggagaatagt Predict ORF larger than 30AA ================================================ Protein_Len: 32 Strand: + Start: 54 End: 149 ..................................................... M T H E K R A G F H L L C N L L T F L C L F L L S M S V P D V S ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 34 Strand: + Start: 233 End: 334 ........................................................................................................................................................................................................................................ M R T S V L T S T Y K S R L L T L S I M W F F N H A S A F N P A C P ....................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 283 End: 462 .......................................................................................................................................................................................................................................................................................... M N N V V F Q P R F G I Q P C L S V G I F Y S G L Y L L E N I I S F S K P H Y Y I M F S R T C K A F Y G K N I K R F A K ....................................................................................................................................................................................................................................................... Protein_Len: 36 Strand: + Start: 517 End: 624 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M N E M M I V F N L K F F H A I L Y S Y P S V F D R L D K M T T F L H H ..................................................................................... Protein_Len: 30 Strand: + Start: 620 End: 709 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M I R I V Q L F S D S F K R L I S L Y F S F I L D Q K E N S Protein_Len: 32 Strand: - Start: 542 End: 637 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. N L I R E H W E I S K G K Q T Q D I L Y S S S M K V D N S Y H M ........................................................................ gacatactcctttccatatttttaggaccttatgaaaactaaggaactaaaggttgactcatgaaaaaagagcaggttttcacctgctctgcaatcttctgacgtttttatgtttgtttctgttgagtatgtctgttcccgatgtttcctaactctctagtagcaaatattacgtactttattgatcgtttcacaagatgacgtgtgctttcaccacactaaaaatttatgaattaggacaagtgtcctaacatcaacttataaaagtaggcttttaaccctatcaataatgtggtttttcaaccacgcttcggcattcaaccctgcctgtccgtaggcattttttactcgggtttatatttgctagaaaacatcatctcattttctaagccccattactatatcatgttttcaagaacttgtaaagcgttttacggaaaaaatataaaaaggttcgcaaaatagttagattttactcgatttaacaatgattattttcttgtaaacgattataaagtgaacgaaatgatgatagtatttaatttaaaattctttcatgccattctatactcttacccttctgtgtttgatcgattagataagatgacgacatttttacatcattagaatagtgcaacttttttcagacagttttaaaagattgatttccctatatttttcctttatactggatcaaaaggagaatagt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 84 Start: 398 End: 427 .............................................................................................................................................................................................................................................................................................................................................................................................................CTTTACAAGTTCTTGAAAACATGATATAGT.......................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 83 Start: 661 End: 690 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATTTCCCTATATTTTTCCTTTATACT................... PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 542 End: 571 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAAAATTCTTTCATGCCATTCTATACT.......................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gacatactcctttccatatttttaggaccttatgaaaactaaggaactaaaggttgactcatgaaaaaagagcaggttttcacctgctctgcaatcttctgacgtttttatgtttgtttctgttgagtatgtctgttcccgatgtttcctaactctctagtagcaaatattacgtactttattgatcgtttcacaagatgacgtgtgctttcaccacactaaaaatttatgaattaggacaagtgtcctaacatcaacttataaaagtaggcttttaaccctatcaataatgtggtttttcaaccacgcttcggcattcaaccctgcctgtccgtaggcattttttactcgggtttatatttgctagaaaacatcatctcattttctaagccccattactatatcatgttttcaagaacttgtaaagcgttttacggaaaaaatataaaaaggttcgcaaaatagttagattttactcgatttaacaatgattattttcttgtaaacgattataaagtgaacgaaatgatgatagtatttaatttaaaattctttcatgccattctatactcttacccttctgtgtttgatcgattagataagatgacgacatttttacatcattagaatagtgcaacttttttcagacagttttaaaagattgatttccctatatttttcctttatactggatcaaaaggagaatagt Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 100 HP_score: -12.2 Tail_Score: -5.1675 Start: 70 End: 89 Full_Region: cgtcagaagattgca gagcaggt gaaa acctgctc ttttttcatgagtca .....................................................................gagcaggtgaaaacctgctc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 74 HP_score: -8.5 Tail_Score: -3.29973 Start: 234 End: 251 Full_Region: ttttataagttgatg ttaggac actt gtcctaa ttcataaatttttag .........................................................................................................................................................................................................................................ttaggacacttgtcctaa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 80 HP_score: -5.4 Tail_Score: -5.16237 Start: 325 End: 340 Full_Region: TTCGGCATTCAACCC TGCCTG TCCG TAGGCA TTTTTTACTCGGGTT ....................................................................................................................................................................................................................................................................................................................................TGCCTGTCCGTAGGCA................................................................................................................................................................................................................................................................................................................................................................................. Find igs database================================================ Query_seq: SMT_1418:SMT_1419|SMT_1418:SMT_1419:lysine decarboxylase:hypothetical protein:<-->:1403238..1403946 709 gacatactcctttccatatttttaggaccttatgaaaactaaggaactaaaggttgactcatgaaaaaagagcaggttttcacctgctctgcaatcttctgacgtttttatgtttgtttctgttgagtatgtctgttcccgatgtttcctaactctctagtagcaaatattacgtactttattgatcgtttcacaagatgacgtgtgctttcaccacactaaaaatttatgaattaggacaagtgtcctaacatcaacttataaaagtaggcttttaaccctatcaataatgtggtttttcaaccacgcttcggcattcaaccctgcctgtccgtaggcattttttactcgggtttatatttgctagaaaacatcatctcattttctaagccccattactatatcatgttttcaagaacttgtaaagcgttttacggaaaaaatataaaaaggttcgcaaaatagttagattttactcgatttaacaatgattattttcttgtaaacgattataaagtgaacgaaatgatgatagtatttaatttaaaattctttcatgccattctatactcttacccttctgtgtttgatcgattagataagatgacgacatttttacatcattagaatagtgcaacttttttcagacagttttaaaagattgatttccctatatttttcctttatactggatcaaaaggagaatagt Intra-Species Hit: Count: 1 Min: 1 Max: 709 Len: 709 Subject: smit_SMT_1418_SMT_1419|lysine decarboxylase:hypothetical protein|NEGATIVE:POSITIVE|[1403238,1403946]|709 HSP 1 e-value: 0.0 bit: 1405.0 Len: 709 Query Start:1 Query End:709 Subject Strand: POSITIVE Subject Start: 1 Subject End: 709 gacatactcctttccatatttttaggaccttatgaaaactaaggaactaaaggttgactcatgaaaaaagagcaggttttcacctgctctgcaatcttctgacgtttttatgtttgtttctgttgagtatgtctgttcccgatgtttcctaactctctagtagcaaatattacgtactttattgatcgtttcacaagatgacgtgtgctttcaccacactaaaaatttatgaattaggacaagtgtcctaacatcaacttataaaagtaggcttttaaccctatcaataatgtggtttttcaaccacgcttcggcattcaaccctgcctgtccgtaggcattttttactcgggtttatatttgctagaaaacatcatctcattttctaagccccattactatatcatgttttcaagaacttgtaaagcgttttacggaaaaaatataaaaaggttcgcaaaatagttagattttactcgatttaacaatgattattttcttgtaaacgattataaagtgaacgaaatgatgatagtatttaatttaaaattctttcatgccattctatactcttacccttctgtgtttgatcgattagataagatgacgacatttttacatcattagaatagtgcaacttttttcagacagttttaaaagattgatttccctatatttttcctttatactggatcaaaaggagaatagt gacatactcctttccatatttttaggaccttatgaaaactaaggaactaaaggttgactcatgaaaaaagagcaggttttcacctgctctgcaatcttctgacgtttttatgtttgtttctgttgagtatgtctgttcccgatgtttcctaactctctagtagcaaatattacgtactttattgatcgtttcacaagatgacgtgtgctttcaccacactaaaaatttatgaattaggacaagtgtcctaacatcaacttataaaagtaggcttttaaccctatcaataatgtggtttttcaaccacgcttcggcattcaaccctgcctgtccgtaggcattttttactcgggtttatatttgctagaaaacatcatctcattttctaagccccattactatatcatgttttcaagaacttgtaaagcgttttacggaaaaaatataaaaaggttcgcaaaatagttagattttactcgatttaacaatgattattttcttgtaaacgattataaagtgaacgaaatgatgatagtatttaatttaaaattctttcatgccattctatactcttacccttctgtgtttgatcgattagataagatgacgacatttttacatcattagaatagtgcaacttttttcagacagttttaaaagattgatttccctatatttttcctttatactggatcaaaaggagaatagt Inter-species Hit: Count: 1 Min: 2 Max: 360 Len: 359 Subject: NC_008533_SPD_0808_SPD_0809|hypothetical protein:lysine decarboxylase|NEGATIVE:POSITIVE|[825833,826192]|360 HSP 1 e-value: 0.0 bit: 664.0 Len: 359 Query Start:2 Query End:360 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 359 .acatactcctttccatatttttaggaccttatgaaaactaaggaactaaaggttgactcatgaaaaaagagcaggttttcacctgctctgcaatcttctgacgtttttatgtttgtttctgttgagtatgtctgttcccgatgtttcctaactctctagtagcaaatattacgtactttattgatcgtttcacaagatgacgtgtgctttcaccacactaaaaatttatgaattaggacaagtgtcctaacatcaacttataaaagtaggcttttaaccctatcaataatgtggtttttcaaccacgcttcggcattcaaccctgcctgtccgtaggcattttttactcgggtttatat............................................................................................................................................................................................................................................................................................................................................................. .acatactcctttcaatatttttaggaccttatgaaaactaaggaactaaaggttgactcatgaaaaaagagcaggttttcacctgctctgcaatcttctgacgtgtttattttggtttctgttgagtatgtctgttcccgatgtttcctaactctctagtagcaaatattacgtactttattgatcgtttcacaagatgacgtgtgctttcaccacactaaaaatttatgaattaggacaagtgtcctaacatcaacttataaaagtaggcttttaaccctatcaataatgtggcttttcaaccacgcttcggcattcaaccctgcctgtccgtaagcattttttactcgggtttatat............................................................................................................................................................................................................................................................................................................................................................. Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACAUACUCCUUUCCAUAUUUUUAGGACCUUAUGAAAACUAAGGAACUAAAGGUUGACUCAUGAAAAAAGAGCAGGUUUUCACCUGCUCUGCAAUCUUCUGACGUUUUUAUGUUUGUUUCUGUUGAGUAUGUCUGUUCCCGAUGUUUCCUAACUCUCUAGUAGCAAAUAUUACGUACUUUAUUGAUCGUUUCACAAGAUGACGUGUGCUUUCACCACACUAAAAAUUUAUGAAUUAGGACAAGUGUCCUAACAUCAACUUAUAAAAGUAGGCUUUUAACCCUAUCAAUAAUGUGGUUUUUCAACCACGCUUCGGCAUUCAACCCUGCCUGUCCGUAGGCAUUUUUUACUCGGGUUUAUAU ((((((((........((((((((..((((((....).)))))..)))))))).(((.((((((((.(((((((((....)))))))))....((....))..))))))))...)))......)))))))).((..((((..(((....))).....(((((.((((.(((((.((.((((((((.(........((((..(((((.......)))))..............(((((((....)))))))))))......((((((....))))))...).)))))))).((((((....)))))).....((((........)))).)).)))))..)))).)))))))))..))... (-91.20) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUAUAAACCCGAGUAAAAAAUGCCUACGGACAGGCAGGGUUGAAUGCCGAAGCGUGGUUGAAAAACCACAUUAUUGAUAGGGUUAAAAGCCUACUUUUAUAAGUUGAUGUUAGGACACUUGUCCUAAUUCAUAAAUUUUUAGUGUGGUGAAAGCACACGUCAUCUUGUGAAACGAUCAAUAAAGUACGUAAUAUUUGCUACUAGAGAGUUAGGAAACAUCGGGAACAGACAUACUCAACAGAAACAAACAUAAAAACGUCAGAAGAUUGCAGAGCAGGUGAAAACCUGCUCUUUUUUCAUGAGUCAACCUUUAGUUCCUUAGUUUUCAUAAGGUCCUAAAAAUAUGGAAAGGAGUAUGU .......((((((((..(((((..((((.((.((((........)))).....((((((....)))))).((((((((.((((.....))))..(((((((((.(((.((((((((....)))))))).............(((((.(....)))))).))).)))))))))..)))))))).)).)))).)))))..)))..........(....).))))).....((((((((......................((((((((....(((((((((....))))))))).))))).))).......(((((..(((((.......)))))..)))))...........)))))))) (-107.70) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 910 100 51 192 143 smit:SMT_1418|5end_lysine_decarboxylase_1403147..1403377_NEGATIVE 341 344 301 82 40 smit:SMT_1194|5end_phosphoribosylformylglycinamidine_cyclo-ligase_1153171..1153401_NEGATIVE 335 337 294 207 159 smit:SMT_382|5end_valyl-tRNA_synthetase_317706..317936_POSITIVE 313 218 173 207 152 smit:SMT_1046|5end_chaperonin_GroEL_987904..988134_NEGATIVE 313 218 173 60 5 smit:SMT_1045|5end_cochaperonin_GroES_987582..987812_NEGATIVE 313 218 173 207 152 smit:SMT_1044|5end_chaperonin_GroEL_(HSP60_family)_987435..987665_NEGATIVE 308 339 293 90 35 smit:SMT_676|5end_DNA_helicase_II_585266..585496_NEGATIVE 306 339 291 226 168 smit:SMT_849|5end_hypothetical_protein_796127..796357_NEGATIVE 305 349 304 55 10 smit:SMT_944|5end_PhnA_protein_895106..895336_NEGATIVE 304 340 294 91 33 smit:SMT_2034|5end_hydrolase,_haloacid_dehalogenase-like_family_1946671..1946901_POSITIVE 302 120 71 231 185 smit:SMT_1645|5end_hypothetical_protein_1631738..1631968_POSITIVE 297 120 73 175 116 smit:SMT_1077|5end_GTP_cyclohydrolase_I_1015410..1015640_NEGATIVE 296 338 291 63 17 smit:SMT_1453|5end_K07335_basic_membrane_protein_A_and_related_proteins_1437407..1437637_NEGATIVE 289 350 307 188 139 smit:SMT_1734|5end_serine/threonine_protein_phosphatase_1718558..1718788_POSITIVE 288 340 303 102 54 smit:SMT_543|5end_topoisomerase_IV_subunit_B_458372..458602_POSITIVE 284 106 73 46 14 smit:SMT_1991|5end_K03706_transcriptional_pleiotropic_repressor_1918264..1918494_NEGATIVE 284 97 51 102 55 smit:SMT_1717|5end_DNA-3-methyladenine_glycosylase_I_1704274..1704504_NEGATIVE 284 349 301 99 40 smit:SMT_1693|5end_dimethyladenosine_transferase_1675800..1676030_POSITIVE 282 217 184 43 8 smit:SMT_1261|5end_MutT/NUDIX_family_protein_1226586..1226816_POSITIVE 280 350 301 126 53 smit:SMT_664|5end_ribosomal_large_subunit_pseudouridine_synthase,_RluD_subfamily_575930..576160_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 314 97 60 85 51 smit:SMT_1370|3end_K06217_phosphate_starvation-inducible_protein_PhoH_and_related_proteins_1349499..1349649_NEGATIVE 304 340 294 79 21 smit:SMT_2033|3end_hydrolase,_haloacid_dehalogenase-like_family_1946739..1946889_POSITIVE 289 339 305 149 115 smit:SMT_1149|3end_hypothetical_protein_1094040..1094190_NEGATIVE 288 350 304 98 38 smit:SMT_1443|3end_23S_rRNA_m(5)U_1939_methyltransferase_1426503..1426653_NEGATIVE 288 340 303 50 2 smit:SMT_542|3end_hypothetical_protein_458400..458550_POSITIVE 284 97 51 92 45 smit:SMT_1718|3end_Holliday_junction_DNA_helicase_RuvA_1704284..1704434_NEGATIVE 282 335 291 73 18 smit:SMT_2015|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1932839..1932989_POSITIVE 282 217 184 41 6 smit:SMT_1260|3end_hypothetical_protein_1226664..1226814_POSITIVE 280 350 301 129 56 smit:SMT_665|3end_NAD+_kinase_575927..576077_NEGATIVE 279 80 41 81 25 smit:SMT_1279|3end_translation_elongation_factor_Ts_1243451..1243601_POSITIVE 276 249 201 131 77 smit:SMT_1643|3end_2-isopropylmalate_synthase_1630772..1630922_POSITIVE 276 345 303 146 101 smit:SMT_1061|3end_hypothetical_protein_999915..1000065_POSITIVE 275 335 293 127 79 smit:SMT_1554|3end_isoleucyl-tRNA_synthetase_1539912..1540062_POSITIVE 274 107 65 89 54 smit:SMT_1473|3end_hypothetical_protein_1455119..1455269_POSITIVE 273 168 122 122 65 smit:SMT_1057|3end_replicative_DNA_helicase_996565..996715_POSITIVE 272 340 291 59 19 smit:SMT_2057|3end_cell_division_protein_FtsH_1966897..1967047_NEGATIVE 270 329 290 119 79 smit:SMT_1027|3end_K02026_multiple_sugar_transport_system_permease_protein_962641..962791_NEGATIVE 269 118 73 63 15 smit:SMT_1918|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1861816..1861966_NEGATIVE 269 319 274 84 30 smit:SMT_614|3end_UDP-N-acetylglucosamine_1-carboxyvinyltransferase_524958..525108_POSITIVE 267 338 291 119 66 smit:SMT_185|3end_50S_ribosomal_protein_L6_122619..122769_POSITIVE