Origin IGS: aagattgtagcaaatcataaactttagaaaaagtgttataataacaatataatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataatcatccagctcttttaaggaggagtaaatttct .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 agaaatttactcctccttaaaagagctggatgattatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagcattatattgttattataacactttttctaaagtttatgatttgctacaatctt Mask Tandem Repeat Region ================================================ aagattgtagcaaatcataaactttagaaaaagtgttataataacaatataatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataatcatccagctcttttaaggaggagtaaatttct Find is-nt database================================================ Query_seq: SMT_129:SMT_130|SMT_129:SMT_130:putative glycosyltransferase:capsular polysaccharide biosynthesis protein:->->:80944..81134 191 aagattgtagcaaatcataaactttagaaaaagtgttataataacaatataatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataatcatccagctcttttaaggaggagtaaatttct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_129:SMT_130|SMT_129:SMT_130:putative glycosyltransferase:capsular polysaccharide biosynthesis protein:->->:80944..81134 191 aagattgtagcaaatcataaactttagaaaaagtgttataataacaatataatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataatcatccagctcttttaaggaggagtaaatttct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_129:SMT_130|SMT_129:SMT_130:putative glycosyltransferase:capsular polysaccharide biosynthesis protein:->->:80944..81134 191 aagattgtagcaaatcataaactttagaaaaagtgttataataacaatataatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataatcatccagctcttttaaggaggagtaaatttct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 aagattgtagcaaatcataaactttagaaaaagtgttataataacaatataatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataatcatccagctcttttaaggaggagtaaatttct Predict ORF larger than 30AA ================================================ Protein_Len: 47 Strand: + Start: 49 End: 189 ................................................ M M L F E N Q I Q T A S T S P C R T Q V Q P A A S F L V C S L I F I E Y N H P A L L R R S K F .. aagattgtagcaaatcataaactttagaaaaagtgttataataacaatataatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataatcatccagctcttttaaggaggagtaaatttct Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 24 End: 53 .......................TTAGAAAAAGTGTTATAATAACAATATAAT.......................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 130 End: 159 .................................................................................................................................GTTTGCTCTTTGATTTTCATTGAGTATAAT................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aagattgtagcaaatcataaactttagaaaaagtgttataataacaatataatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataatcatccagctcttttaaggaggagtaaatttct Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: SMT_129:SMT_130|SMT_129:SMT_130:putative glycosyltransferase:capsular polysaccharide biosynthesis protein:->->:80944..81134 191 aagattgtagcaaatcataaactttagaaaaagtgttataataacaatataatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataatcatccagctcttttaaggaggagtaaatttct Intra-Species Hit: Count: 31 Min: 1 Max: 191 Len: 191 Subject: smit_SMT_129_SMT_130|putative glycosyltransferase:capsular polysaccharide biosynthesis protein|POSITIVE:POSITIVE|[80944,81134]|191 HSP 1 e-value: 1.0E-104 bit: 379.0 Len: 191 Query Start:1 Query End:191 Subject Strand: POSITIVE Subject Start: 1 Subject End: 191 aagattgtagcaaatcataaactttagaaaaagtgttataataacaatataatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataatcatccagctcttttaaggaggagtaaatttct aagattgtagcaaatcataaactttagaaaaagtgttataataacaatataatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataatcatccagctcttttaaggaggagtaaatttct Subject: smit_SMT_259_SMT_260|dipeptide/tripeptide permease:phage transcriptional repressor|POSITIVE:POSITIVE|[199242,199609]|368 HSP 1 e-value: 5.0E-53 bit: 208.0 Len: 109 Query Start:50 Query End:158 Subject Strand: POSITIVE Subject Start: 102 Subject End: 210 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_1393_SMT_1394|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:POSITIVE|[1369621,1370215]|595 HSP 1 e-value: 3.0E-51 bit: 202.0 Len: 110 Query Start:50 Query End:159 Subject Strand: POSITIVE Subject Start: 150 Subject End: 259 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataat................................ .................................................taatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataat................................ Subject: smit_SMT_1138_SMT_1139|hypothetical protein:rRNA (guanine-N1-)- methyltransferase|NEGATIVE:POSITIVE|[1079638, 1079894]|257 HSP 1 e-value: 3.0E-51 bit: 202.0 Len: 110 Query Start:50 Query End:159 Subject Strand: NEGATIVE Subject Start: 72 Subject End: 181 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataat................................ .................................................taatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataat................................ Subject: smit_SMT_662_SMT_663|A/G-specific adenine glycosylase:phosphate acetyltransferase|NEGATIVE:NEGATIVE|[573918,574105]|188 HSP 1 e-value: 5.0E-50 bit: 198.0 Len: 104 Query Start:55 Query End:158 Subject Strand: POSITIVE Subject Start: 52 Subject End: 155 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ......................................................ctcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_1601_SMT_1602|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|POSITIVE:POSITIVE|[1592204,1592524]|321 HSP 1 e-value: 7.0E-49 bit: 194.0 Len: 102 Query Start:55 Query End:156 Subject Strand: POSITIVE Subject Start: 194 Subject End: 295 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... ......................................................ctcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... Subject: smit_SMT_1487_SMT_1488|hypothetical protein:K06147 ATP-binding cassette, subfamily B, bacterial|POSITIVE:POSITIVE|[1467137,1467296]|160 HSP 1 e-value: 2.0E-46 bit: 186.0 Len: 102 Query Start:55 Query End:156 Subject Strand: POSITIVE Subject Start: 21 Subject End: 122 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... ......................................................ctcttcgaaaatcaaattcaaactgcgtcaacgtcgccttgccgtactcgagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... Subject: smit_SMT_698_SMT_699|uracil permease:K03106 signal recognition particle, subunit SRP54|POSITIVE:NEGATIVE|[609830,610030]|201 HSP 1 e-value: 2.0E-46 bit: 186.0 Len: 102 Query Start:55 Query End:156 Subject Strand: POSITIVE Subject Start: 3 Subject End: 104 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... ......................................................ctcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgttctttgattttcattgagtat................................... Subject: smit_SMT_482_SMT_483|hypothetical protein predicted by Glimmer/Critica:transcriptional activator TipA, putative|NEGATIVE:POSITIVE|[418627,418966]|340 HSP 1 e-value: 3.0E-45 bit: 182.0 Len: 124 Query Start:35 Query End:158 Subject Strand: POSITIVE Subject Start: 207 Subject End: 330 ..................................gttataataacaatataatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ..................................gttatactatcaatgtaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_1809_SMT_1810|MutT/NUDIX family protein:hypothetical protein|POSITIVE:POSITIVE|[1785195,1785358]|164 HSP 1 e-value: 7.0E-43 bit: 174.0 Len: 104 Query Start:55 Query End:158 Subject Strand: POSITIVE Subject Start: 3 Subject End: 106 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ......................................................ctcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_1139_SMT_1140|rRNA (guanine-N1-)-methyltransferase:glycogen phosphorylase|POSITIVE:NEGATIVE|[1080744,1081405]|662 HSP 1 e-value: 7.0E-43 bit: 174.0 Len: 104 Query Start:55 Query End:158 Subject Strand: NEGATIVE Subject Start: 557 Subject End: 660 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ......................................................ctcttcgaaaatcaaattcaaaccacgtcagcgttgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_1963_SMT_1964|ribonuclease BN, putative:sodium/hydrogen exchanger family protein|NEGATIVE:NEGATIVE|[1896553,1896685]|133 HSP 1 e-value: 3.0E-42 bit: 172.0 Len: 109 Query Start:50 Query End:158 Subject Strand: NEGATIVE Subject Start: 24 Subject End: 132 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcatkgagtataa................................. Subject: smit_SMT_1534_SMT_1535|signal peptidase I:exodeoxyribonuclease V alpha chain|POSITIVE:POSITIVE|[1517973,1518206]|234 HSP 1 e-value: 4.0E-41 bit: 168.0 Len: 109 Query Start:50 Query End:158 Subject Strand: NEGATIVE Subject Start: 97 Subject End: 205 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................taatactcttcgaaaatcaaattcaaaccacgtcagtttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_1068_SMT_1069|ATP-dependent DNA helicase RecG:acetyl xylan esterase, putative|POSITIVE:POSITIVE|[1009047,1009469]|423 HSP 1 e-value: 4.0E-41 bit: 168.0 Len: 109 Query Start:50 Query End:158 Subject Strand: NEGATIVE Subject Start: 19 Subject End: 127 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_2133_SMT_2134|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[2014098,2014211]|114 HSP 1 e-value: 7.0E-40 bit: 165.0 Len: 103 Query Start:50 Query End:152 Subject Strand: POSITIVE Subject Start: 12 Subject End: 114 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattga....................................... .................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga....................................... Subject: smit_SMT_872_SMT_873|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[820709,820822]|114 HSP 1 e-value: 7.0E-40 bit: 165.0 Len: 103 Query Start:50 Query End:152 Subject Strand: POSITIVE Subject Start: 12 Subject End: 114 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattga....................................... .................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga....................................... Subject: smit_SMT_384_SMT_385|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[319921,320034]|114 HSP 1 e-value: 7.0E-40 bit: 165.0 Len: 103 Query Start:50 Query End:152 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 103 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattga....................................... .................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattga....................................... Subject: smit_SMT_1670_SMT_1671|K02030 polar amino acid transport system substrate-binding protein:hypothetical protein|POSITIVE:NEGATIVE|[1659356,1659481]|126 HSP 1 e-value: 1.0E-38 bit: 161.0 Len: 101 Query Start:55 Query End:155 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 101 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagta.................................... ......................................................ctcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagta.................................... Subject: smit_SMT_2108_SMT_2109|adenylosuccinate lyase:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1998942,1999150]|209 HSP 1 e-value: 4.0E-38 bit: 159.0 Len: 104 Query Start:55 Query End:158 Subject Strand: NEGATIVE Subject Start: 104 Subject End: 207 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ......................................................ctcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgtggctagctttctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_1179_SMT_1180|aldose 1-epimerase:putative tagatose-6-phosphate aldose/ketose isomerase|NEGATIVE:NEGATIVE|[1137945,1138125]|181 HSP 1 e-value: 4.0E-38 bit: 159.0 Len: 104 Query Start:55 Query End:158 Subject Strand: NEGATIVE Subject Start: 76 Subject End: 179 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ......................................................ctcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgtggctagctttctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_890_SMT_891|K02029 polar amino acid transport system permease protein:oxidoreductase, putative|POSITIVE:POSITIVE|[837753,837989]|237 HSP 1 e-value: 4.0E-38 bit: 159.0 Len: 104 Query Start:55 Query End:158 Subject Strand: POSITIVE Subject Start: 3 Subject End: 106 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ......................................................ctcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcgtctagcttcctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_826_SMT_827|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[750113,750528]|416 HSP 1 e-value: 4.0E-38 bit: 159.0 Len: 104 Query Start:55 Query End:158 Subject Strand: POSITIVE Subject Start: 108 Subject End: 211 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ......................................................ctcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactccagtacaacctgcggctagcttcctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_1766_SMT_1767|sucrose-6-phosphate hydrolase:oxidoreductase, short chain dehydrogenase/reductase family|POSITIVE:NEGATIVE|[1743162,1743332]|171 HSP 1 e-value: 3.0E-36 bit: 153.0 Len: 109 Query Start:50 Query End:158 Subject Strand: POSITIVE Subject Start: 5 Subject End: 113 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................taatactcttcgaaaatcaaattcaaaccacgtcagcgtcgcctcaccgtactcaagtacagcttgcgactagcttcctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_442_SMT_443|transcriptional regulator, putative:hydroxyethylthiazole kinase|POSITIVE:POSITIVE|[382461,382694]|234 HSP 1 e-value: 3.0E-36 bit: 153.0 Len: 109 Query Start:50 Query End:158 Subject Strand: POSITIVE Subject Start: 34 Subject End: 142 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................taattctcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtactcaagtacagcctacggctagcttcctagtttgctctttgattttcattgagcataa................................. Subject: smit_SMT_1781_SMT_1782|transcriptional regulator, xre family:hypothetical protein|POSITIVE:POSITIVE|[1759357,1759659]|303 HSP 1 e-value: 2.0E-34 bit: 147.0 Len: 102 Query Start:55 Query End:156 Subject Strand: POSITIVE Subject Start: 179 Subject End: 280 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... ......................................................ctcttcgaaaatcaaattcaaactacgtcagcttcaccttgccgtactcaagtacagccttcggctagcttcctagtttgctctttgattttcattgagtat................................... Subject: smit_SMT_798_SMT_799|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[707167,707385]|219 HSP 1 e-value: 2.0E-31 bit: 137.0 Len: 109 Query Start:50 Query End:158 Subject Strand: NEGATIVE Subject Start: 112 Subject End: 219 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................taatactcttcgaaaatctc-ttcaaaccacgtcagcttcaccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataa................................. Subject: smit_SMT_1200_SMT_1201|K06148 ATP-binding cassette, subfamily C, bacterial:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1163326,1163854]|529 HSP 1 e-value: 1.0E-16 bit: 87.7 Len: 48 Query Start:109 Query End:156 Subject Strand: NEGATIVE Subject Start: 14 Subject End: 61 ............................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... ............................................................................................................cagcctgcggctagttttctagtttgctctttgattttcattgagtat................................... HSP 2 e-value: 2.0E-15 bit: 83.8 Len: 46 Query Start:55 Query End:100 Subject Strand: NEGATIVE Subject Start: 116 Subject End: 161 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................... ......................................................ctcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... Subject: smit_SMT_495_SMT_496|bacterial peptide chain release factor 2 (RF-2):superoxide dismutase, manganese-dependent|POSITIVE:POSITIVE|[430114, 430572]|459 HSP 1 e-value: 5.0E-16 bit: 85.7 Len: 43 Query Start:116 Query End:158 Subject Strand: NEGATIVE Subject Start: 157 Subject End: 199 ...................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtataa................................. ...................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtataa................................. HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 52 Query Start:49 Query End:100 Subject Strand: NEGATIVE Subject Start: 307 Subject End: 357 ................................................ataatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................... ................................................ataatactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta........................................................................................... Subject: smit_SMT_217_SMT_218|hypothetical protein:undecaprenyl pyrophosphate synthetase|POSITIVE:POSITIVE|[149949,150294]|346 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 45 Query Start:112 Query End:156 Subject Strand: NEGATIVE Subject Start: 158 Subject End: 202 ...............................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat................................... ...............................................................................................................cctgcggctagcttcctagtttggtctttgattttcattgagtat................................... HSP 2 e-value: 7.0E-6 bit: 52.0 Len: 30 Query Start:55 Query End:84 Subject Strand: NEGATIVE Subject Start: 239 Subject End: 268 ......................................................ctcttcgaaaatcaaattcaaaccgcgtca........................................................................................................... ......................................................ctcttcgaaaatcaaattcaaaccacgtca........................................................................................................... Subject: smit_SMT_1544_SMT_1545|mevalonate kinase:choline-binding protein|NEGATIVE:NEGATIVE|[1528975,1529249]|275 HSP 1 e-value: 7.0E-12 bit: 71.9 Len: 52 Query Start:49 Query End:100 Subject Strand: NEGATIVE Subject Start: 136 Subject End: 187 ................................................ataatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................... ................................................ataatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgta........................................................................................... HSP 2 e-value: 1.0E-7 bit: 58.0 Len: 45 Query Start:112 Query End:156 Subject Strand: NEGATIVE Subject Start: 33 Subject End: 77 ...............................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtat................................... ...............................................................................................................cctgcgggtagcttcatagtttgctttttgattttcattgagtat................................... Subject: smit_SMT_912_SMT_913|fructokinase:putative sucrose-specific PTS permease, enzyme II|NEGATIVE:NEGATIVE|[863711,864012]|302 HSP 1 e-value: 7.0E-12 bit: 71.9 Len: 40 Query Start:116 Query End:155 Subject Strand: NEGATIVE Subject Start: 152 Subject End: 191 ...................................................................................................................cggctagtttcctagtttgctctttgattttcattgagta.................................... ...................................................................................................................cggctagcttcctagtttgctctttgattttcattgagta.................................... HSP 2 e-value: 3.0E-8 bit: 60.0 Len: 46 Query Start:55 Query End:100 Subject Strand: NEGATIVE Subject Start: 255 Subject End: 300 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................... ......................................................ctcttcgaaaatcaaattcaaaccatgtcagcttcgccttgccgta........................................................................................... Inter-species Hit: Count: 29 Min: 49 Max: 159 Len: 111 Subject: NC_008533_SPD_1551_SPD_1552|prevent-host-death family protein:hypothetical protein|NEGATIVE:NEGATIVE|[1574500,1574730]|231 HSP 1 e-value: 3.0E-51 bit: 202.0 Len: 110 Query Start:49 Query End:158 Subject Strand: NEGATIVE Subject Start: 85 Subject End: 194 ................................................ataatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ................................................ataatactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. Subject: NC_003098_spr1586_spr1587|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1567002,1567199]|198 HSP 1 e-value: 3.0E-51 bit: 202.0 Len: 110 Query Start:49 Query End:158 Subject Strand: NEGATIVE Subject Start: 52 Subject End: 161 ................................................ataatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ................................................ataatactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. Subject: NC_003028_SP_1741_SP_1742|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1645558,1645794]|237 HSP 1 e-value: 3.0E-51 bit: 202.0 Len: 110 Query Start:49 Query End:158 Subject Strand: NEGATIVE Subject Start: 91 Subject End: 200 ................................................ataatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ................................................ataatactcttcgaaaatcaaattcaaatcgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. Subject: NC_008533_SPD_0546_SPD_0547|branched-chain amino acid transport system II carrier protein:hypothetical protein|POSITIVE:POSITIVE|[559539,559741]|203 HSP 1 e-value: 1.0E-50 bit: 200.0 Len: 109 Query Start:50 Query End:158 Subject Strand: POSITIVE Subject Start: 5 Subject End: 113 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgtcgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. Subject: NC_003098_spr0551_spr0552|Branched-chain amino acid transport system carrier protein:hypothetical protein|POSITIVE:POSITIVE|[552009,552211]|203 HSP 1 e-value: 1.0E-50 bit: 200.0 Len: 109 Query Start:50 Query End:158 Subject Strand: POSITIVE Subject Start: 5 Subject End: 113 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. .................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgtcgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. Subject: NC_003028_SP_0280_SP_0281|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258312,258528]|217 HSP 1 e-value: 7.0E-49 bit: 194.0 Len: 102 Query Start:55 Query End:156 Subject Strand: NEGATIVE Subject Start: 10 Subject End: 111 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... ......................................................ctcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... Subject: NC_003028_SP_1180_SP_1181|ribonucleotide-diphosphate reductase beta subunit:hypothetical protein|POSITIVE:NEGATIVE|[1119540,1119753]|214 HSP 1 e-value: 2.0E-43 bit: 176.0 Len: 105 Query Start:55 Query End:159 Subject Strand: POSITIVE Subject Start: 3 Subject End: 107 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataat................................ ......................................................ctcttcgaaaatcaaattcaaaccacgtcagcttcgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataat................................ Subject: NC_003028_SP_2183_SP_2184|hypothetical protein:glycerol uptake facilitator protein|NEGATIVE:NEGATIVE|[2101749,2102044]|296 HSP 1 e-value: 3.0E-39 bit: 163.0 Len: 102 Query Start:55 Query End:156 Subject Strand: NEGATIVE Subject Start: 189 Subject End: 290 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... ......................................................ctcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagtat................................... Subject: NC_003028_SP_1472_SP_1473|oxidoreductase, putative:hypothetical protein|POSITIVE:NEGATIVE|[1386055,1386276]|222 HSP 1 e-value: 4.0E-38 bit: 159.0 Len: 108 Query Start:50 Query End:157 Subject Strand: NEGATIVE Subject Start: 115 Subject End: 222 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtata.................................. .................................................taatactcttcgaaaatcaaattcaaaccacgtcagcttcaccttgccgtacttaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtata.................................. Subject: NC_003028_SP_0816_SP_0817|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[768501,768664]|164 HSP 1 e-value: 4.0E-38 bit: 159.0 Len: 104 Query Start:55 Query End:158 Subject Strand: NEGATIVE Subject Start: 59 Subject End: 162 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ......................................................ctcttcgaaaataaaattcaaaccacgtcagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtataa................................. Subject: NC_003028_SP_0096_SP_0097|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[98992,99168]|177 HSP 1 e-value: 3.0E-36 bit: 153.0 Len: 101 Query Start:55 Query End:155 Subject Strand: NEGATIVE Subject Start: 69 Subject End: 169 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagta.................................... ......................................................ctcttcaaaaatcaaattcaaaccacgtcagcttcgccttaccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagta.................................... Subject: NC_008533_SPD_0714_SPD_0715|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[729726,729889]|164 HSP 1 e-value: 2.0E-33 bit: 143.0 Len: 104 Query Start:55 Query End:158 Subject Strand: NEGATIVE Subject Start: 59 Subject End: 162 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ......................................................ctcttcgaaaataaaattcaaatcacgtaagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtataa................................. Subject: NC_003098_spr0720_spr0721|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[722195,722358]|164 HSP 1 e-value: 2.0E-33 bit: 143.0 Len: 104 Query Start:55 Query End:158 Subject Strand: NEGATIVE Subject Start: 59 Subject End: 162 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ......................................................ctcttcgaaaataaaattcaaatcacgtaagcgtcgccttaccgtactcaagtatagcctgcggctagcttcctagtttgctctttgattttcattgagtataa................................. Subject: NC_008533_SPD_0991_SPD_0992|ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1002301,1002645]|345 HSP 1 e-value: 4.0E-32 bit: 139.0 Len: 102 Query Start:55 Query End:156 Subject Strand: POSITIVE Subject Start: 148 Subject End: 249 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... ......................................................ctcttcgaaaatcaaattcaaaccacgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat................................... Subject: NC_003098_spr1014_spr1015|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[994770,995114]|345 HSP 1 e-value: 4.0E-32 bit: 139.0 Len: 102 Query Start:55 Query End:156 Subject Strand: POSITIVE Subject Start: 148 Subject End: 249 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... ......................................................ctcttcgaaaatcaaattcaaaccacgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat................................... Subject: NC_003028_SP_1107_SP_1108|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1038201,1038545]|345 HSP 1 e-value: 9.0E-30 bit: 131.0 Len: 102 Query Start:55 Query End:156 Subject Strand: POSITIVE Subject Start: 148 Subject End: 249 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... ......................................................ctcttcgaaaatcaaattcaaaccatgtcaatttcaccttgccgtactcaagtacagcctgcggctaacttcctagtttgcactttaattttcattgagtat................................... Subject: NC_008533_SPD_0047_SPD_0049|hypothetical protein:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[39873,41901]|2029 HSP 1 e-value: 5.0E-19 bit: 95.6 Len: 48 Query Start:109 Query End:156 Subject Strand: POSITIVE Subject Start: 1963 Subject End: 2010 ............................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... ............................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... HSP 2 e-value: 2.0E-15 bit: 83.8 Len: 46 Query Start:55 Query End:100 Subject Strand: POSITIVE Subject Start: 1863 Subject End: 1908 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................... ......................................................ctcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... Subject: NC_008533_SPD_0089_SPD_0090|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[89674,89930]|257 HSP 1 e-value: 2.0E-18 bit: 93.7 Len: 51 Query Start:50 Query End:100 Subject Strand: POSITIVE Subject Start: 52 Subject End: 102 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................... .................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................... HSP 2 e-value: 8.0E-18 bit: 91.7 Len: 50 Query Start:109 Query End:158 Subject Strand: POSITIVE Subject Start: 159 Subject End: 208 ............................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ............................................................................................................cagcctgcggctagttttctagtttgctctttgattttcattgagtataa................................. Subject: NC_003028_SP_0091_SP_0092|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[94866,95122]|257 HSP 1 e-value: 2.0E-18 bit: 93.7 Len: 51 Query Start:50 Query End:100 Subject Strand: POSITIVE Subject Start: 52 Subject End: 102 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................... .................................................taatactcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................... HSP 2 e-value: 2.0E-15 bit: 83.8 Len: 50 Query Start:109 Query End:158 Subject Strand: POSITIVE Subject Start: 159 Subject End: 208 ............................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ............................................................................................................cagcctgcggctagttttctagtttgctctttgatttttattgagtataa................................. Subject: NC_003028_SP_0041_SP_0042|bacteriocin BlpU:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[40102,40815]|714 HSP 1 e-value: 1.0E-16 bit: 87.7 Len: 48 Query Start:109 Query End:156 Subject Strand: POSITIVE Subject Start: 648 Subject End: 695 ............................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtat................................... ............................................................................................................cagcctacggctagtttcctagtttgctctttgattttcattgagtat................................... HSP 2 e-value: 5.0E-16 bit: 85.7 Len: 51 Query Start:50 Query End:100 Subject Strand: POSITIVE Subject Start: 543 Subject End: 593 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................... .................................................taatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgta........................................................................................... Subject: NC_003028_SP_0631_SP_0633|50S ribosomal protein L1:hypothetical protein|POSITIVE:POSITIVE|[598117,598657]|541 HSP 1 e-value: 5.0E-16 bit: 85.7 Len: 47 Query Start:112 Query End:158 Subject Strand: POSITIVE Subject Start: 491 Subject End: 537 ...............................................................................................................cctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ...............................................................................................................cctgcggctagtttcctagtttgctctttggttttcattgagtataa................................. HSP 2 e-value: 7.0E-6 bit: 52.0 Len: 50 Query Start:50 Query End:99 Subject Strand: POSITIVE Subject Start: 338 Subject End: 386 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgt............................................................................................ .................................................taatactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgt............................................................................................ Subject: NC_003028_SP_0493_SP_0494|DNA-directed RNA polymerase subunit delta:CTP synthetase|POSITIVE:POSITIVE|[470342,470730]|389 HSP 1 e-value: 2.0E-15 bit: 83.8 Len: 50 Query Start:109 Query End:158 Subject Strand: NEGATIVE Subject Start: 127 Subject End: 176 ............................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ............................................................................................................cagcctacggctagtttcctagcttgctctttgattttcattgagtataa................................. HSP 2 e-value: 7.0E-9 bit: 61.9 Len: 51 Query Start:50 Query End:100 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 282 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................... .................................................taatactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta........................................................................................... Subject: NC_008533_SPD_0441_SPD_0442|DNA-directed RNA polymerase, delta subunit, putative:CTP synthase|POSITIVE:POSITIVE|[444164,444552]|389 HSP 1 e-value: 5.0E-13 bit: 75.8 Len: 50 Query Start:109 Query End:158 Subject Strand: NEGATIVE Subject Start: 127 Subject End: 176 ............................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ............................................................................................................cagcctacggctagtttcctagcttgcactttgattttcattgagtataa................................. HSP 2 e-value: 7.0E-9 bit: 61.9 Len: 51 Query Start:50 Query End:100 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 282 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................... .................................................taatactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta........................................................................................... Subject: NC_003098_spr0437_spr0438|DNA-directed RNA polymerase subunit delta:CTP synthetase|POSITIVE:POSITIVE|[436634,437022]|389 HSP 1 e-value: 5.0E-13 bit: 75.8 Len: 50 Query Start:109 Query End:158 Subject Strand: NEGATIVE Subject Start: 127 Subject End: 176 ............................................................................................................cagcctgcggctagtttcctagtttgctctttgattttcattgagtataa................................. ............................................................................................................cagcctacggctagtttcctagcttgcactttgattttcattgagtataa................................. HSP 2 e-value: 7.0E-9 bit: 61.9 Len: 51 Query Start:50 Query End:100 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 282 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgta........................................................................................... .................................................taatactcttcgaaaatctc-ttcaaaccgcgtcaacgtcgccttgccgta........................................................................................... Subject: NC_008533_SPD_1408_SPD_1409|hypothetical protein:sugar ABC transporter, ATP-binding protein|NEGATIVE:NEGATIVE|[1427612,1428111]|500 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 41 Query Start:116 Query End:156 Subject Strand: NEGATIVE Subject Start: 201 Subject End: 241 ...................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtat................................... ...................................................................................................................cggctagtttcctagtttgctctttgatttccattgagtat................................... HSP 2 e-value: 4.0E-7 bit: 56.0 Len: 52 Query Start:50 Query End:101 Subject Strand: NEGATIVE Subject Start: 303 Subject End: 353 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtac.......................................................................................... .................................................taatactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtac.......................................................................................... Subject: NC_003098_spr1436_spr1437|hypothetical protein:ABC transporter ATP-binding protein - multiple sugar transport|NEGATIVE:NEGATIVE|[1420081,1420580]|500 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 41 Query Start:116 Query End:156 Subject Strand: NEGATIVE Subject Start: 201 Subject End: 241 ...................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtat................................... ...................................................................................................................cggctagtttcctagtttgctctttgatttccattgagtat................................... HSP 2 e-value: 4.0E-7 bit: 56.0 Len: 52 Query Start:50 Query End:101 Subject Strand: NEGATIVE Subject Start: 303 Subject End: 353 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtac.......................................................................................... .................................................taatactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtac.......................................................................................... Subject: NC_003028_SP_1579_SP_1580|hypothetical protein:sugar ABC transporter, ATP-binding protein|NEGATIVE:NEGATIVE|[1484730,1485134]|405 HSP 1 e-value: 2.0E-12 bit: 73.8 Len: 41 Query Start:116 Query End:156 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 146 ...................................................................................................................cggctagtttcctagtttgctctttgattttcattgagtat................................... ...................................................................................................................cggctagtttcctagtttgctctttgatttccattgagtat................................... HSP 2 e-value: 4.0E-7 bit: 56.0 Len: 52 Query Start:50 Query End:101 Subject Strand: NEGATIVE Subject Start: 208 Subject End: 258 .................................................taatgctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtac.......................................................................................... .................................................taatactcttcgaaaatctc-ttcaaaccacgtcaacgtcgccttgccgtac.......................................................................................... Subject: NC_008533_SPD_1492_SPD_1493|hypothetical protein:sugar ABC transporter, permease protein|NEGATIVE:NEGATIVE|[1508518,1508789]|272 HSP 1 e-value: 3.0E-11 bit: 69.9 Len: 103 Query Start:55 Query End:157 Subject Strand: NEGATIVE Subject Start: 168 Subject End: 270 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtata.................................. ......................................................ctctgcgaaaatcgaatgcaaactacgtcagcttcaccttgccatacttaagtattgcctgcggttagcttcctagtttgttcttcaattttcattgagtata.................................. Subject: NC_008533_SPD_1432_SPD_1433|UDP-glucose 4-epimerase:FAD dependent oxidoreductase|NEGATIVE:NEGATIVE|[1449278,1449577]|300 HSP 1 e-value: 3.0E-11 bit: 69.9 Len: 43 Query Start:55 Query End:97 Subject Strand: POSITIVE Subject Start: 108 Subject End: 150 ......................................................ctcttcgaaaatcaaattcaaaccgcgtcaacgtcgccttgcc.............................................................................................. ......................................................ctcttcgaaaatccaattcaaaccacgtcaacgtcgccttgcc.............................................................................................. HSP 2 e-value: 5.0E-10 bit: 65.9 Len: 41 Query Start:115 Query End:155 Subject Strand: POSITIVE Subject Start: 260 Subject End: 300 ..................................................................................................................gcggctagtttcctagtttgctctttgattttcattgagta.................................... ..................................................................................................................gcggctagttacctagtttgttctttgattttcattgagta.................................... Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUAAUGCUCUUCGAAAAUCAAAUUCAAACCGCGUCAACGUCGCCUUGCCGUACUCAAGUACAGCCUGCGGCUAGUUUCCUAGUUUGCUCUUUGAUUUUCAUUGAGUAUAAU ...((((((...((((((((((..(((((...(..((((((((...((.((((....)))).))..)))))..)))..)..)))))...))))))))))...))))))... (-33.30) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUUAUACUCAAUGAAAAUCAAAGAGCAAACUAGGAAACUAGCCGCAGGCUGUACUUGAGUACGGCAAGGCGACGUUGACGCGGUUUGAAUUUGAUUUUCGAAGAGCAUUAU ......(((..(((((((((((...((((((.(..(((..(((....(((((((....)))))))..)))...)))..)..))))))..)))))))))))..)))...... (-40.70) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1045 90 41 226 177 smit:SMT_662|5end_A/G-specific_adenine_glycosylase_573827..574057_NEGATIVE 1042 90 41 209 160 smit:SMT_1535|5end_exodeoxyribonuclease_V_alpha_chain_1518067..1518297_POSITIVE 1014 90 41 191 142 smit:SMT_2133|5end_hypothetical_protein_2014007..2014237_NEGATIVE 1014 90 41 191 142 smit:SMT_872|5end_hypothetical_protein_820618..820848_NEGATIVE 1014 90 41 191 142 smit:SMT_385|5end_hypothetical_protein_319895..320125_POSITIVE 907 60 11 226 177 smit:SMT_1139|5end_rRNA_(guanine-N1-)-methyltransferase_1079755..1079985_POSITIVE 844 107 61 97 51 smit:SMT_123|5end_hypothetical_protein_75391..75621_POSITIVE 801 108 61 98 51 smit:SMT_1494|5end_nucleoside_diphosphate_kinase_1479500..1479730_POSITIVE 800 108 61 98 51 smit:SMT_1911|5end_hypothetical_protein_1857614..1857844_POSITIVE 762 50 4 197 152 smit:SMT_236|5end_ribosomal_small_subunit_pseudouridine_synthase_A_174625..174855_POSITIVE 741 110 61 100 51 smit:SMT_867|5end_hypothetical_protein_816316..816546_POSITIVE 722 108 61 98 51 smit:SMT_2086|5end_hypothetical_protein_1983696..1983926_NEGATIVE 655 108 61 201 154 smit:SMT_740|5end_50S_ribosomal_protein_L10_644116..644346_NEGATIVE 586 52 21 155 124 smit:SMT_604|5end_DNA_polymerase_III,_epsilon_chain_518693..518923_POSITIVE 520 39 1 231 194 smit:SMT_496|5end_superoxide_dismutase,_manganese-dependent_430433..430663_POSITIVE 504 48 4 210 167 smit:SMT_218|5end_undecaprenyl_pyrophosphate_synthetase_150155..150385_POSITIVE 487 36 3 228 195 smit:SMT_826|5end_hypothetical_protein_750022..750252_NEGATIVE 462 47 2 173 121 smit:SMT_1783|5end_peptide_methionine_sulfoxide_reductase_1759756..1759986_POSITIVE 412 79 31 159 109 smit:SMT_1915|5end_pyridoxine_biosynthesis_protein_1860329..1860559_POSITIVE 399 68 21 231 173 smit:SMT_1541|5end_isopentenyl-diphosphate_delta-isomerase_1526093..1526323_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1014 90 41 76 27 smit:SMT_2134|3end_hypothetical_protein_2014122..2014272_NEGATIVE 1014 90 41 76 27 smit:SMT_873|3end_hypothetical_protein_820733..820883_NEGATIVE 1014 90 41 76 27 smit:SMT_384|3end_hypothetical_protein_319860..320010_POSITIVE 936 90 41 73 24 smit:SMT_1670|3end_K02030_polar_amino_acid_transport_system_substrate-binding_protein_1659295..1659445_POSITIVE 936 90 41 52 3 smit:SMT_1068|3end_ATP-dependent_DNA_helicase_RecG_1008986..1009136_POSITIVE 880 110 61 57 8 smit:SMT_663|3end_phosphate_acetyltransferase_574016..574166_NEGATIVE 860 108 61 77 30 smit:SMT_235|3end_hypothetical_protein_174391..174541_POSITIVE 857 108 61 91 44 smit:SMT_1075|3end_hypothetical_protein_1013870..1014020_POSITIVE 849 110 61 59 10 smit:SMT_1217|3end_hypothetical_protein_1176166..1176316_NEGATIVE 804 90 41 73 24 smit:SMT_1689|3end_PTS_enzyme,_maltose-and_glucose-specific,_factor_II_homologue_1673139..1673289_POSITIVE 800 108 61 58 11 smit:SMT_1910|3end_pyruvate-formate_lyase_activating_enzyme_1857654..1857804_POSITIVE 799 110 61 55 6 smit:SMT_916|3end_3-hydroxy-3-methylglutaryl-CoA_reductase_868730..868880_NEGATIVE 794 108 61 87 40 smit:SMT_451|3end_thiamine-phosphate_pyrophosphorylase_389647..389797_POSITIVE 754 108 61 91 44 smit:SMT_951|3end_oxidoreductase,_DadA_family_protein/D-amino_acid_oxidase_898995..899145_NEGATIVE 742 105 61 88 44 smit:SMT_1625|3end_DNA_polymerase_IV_1615066..1615216_POSITIVE 664 108 68 41 1 smit:SMT_1356|3end_fibronectin-binding_protein-like_protein_A_1334269..1334419_POSITIVE 652 108 63 46 1 smit:SMT_1535|3end_exodeoxyribonuclease_V_alpha_chain_1520513..1520663_POSITIVE 605 50 4 80 35 smit:SMT_131|3end_phosphatase,_putative_83031..83181_NEGATIVE 605 50 4 145 100 smit:SMT_123|3end_hypothetical_protein_75623..75773_POSITIVE 462 47 2 77 25 smit:SMT_1782|3end_hypothetical_protein_1759740..1759890_POSITIVE