Origin IGS:
ttgacacaaaaaaccgcatttcaagaagatctgcggttttaaatttcaatttttaaactatctatcccaaaagtctaaaacatttaaagcttttagcttctccatttattttcgattcgaaataaaaaacttatcaataaatagcaagtgaaataaggcaagtgtaattcccgataagcacccatgataagagatttcttgatgggtaagggggtaaagattactattacccgccaagaggcatgttaaaataacaaatagaatccaaaataaatccgtccatttatattttgaaaaatattttttccacataagaacaccttctttcctataatcatattataatactttatgtaagcgaacacaagaaatttgaggtaatttttaagtagatttcgaggcttaaaggttgtaaaaccagcattttaagcgttcaatgtgtctatgatttctctctttttaattcaagattgactcaaatccacagcattcaaaaaaagcgaatttcaatcgaaattcgctttataggaaagtgtattagtataaatcttgtatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
tactcttcgaaaatcaaattcaaaccacgtcagcgttgccttgccgtactcaagtacagcctgcggctagcttcctagtttgctctttgattttcattgagtataagatacaagatttatactaatacactttcctataaagcgaatttcgattgaaattcgctttttttgaatgctgtggatttgagtcaatcttgaattaaaaagagagaaatcatagacacattgaacgcttaaaatgctggttttacaacctttaagcctcgaaatctacttaaaaattacctcaaatttcttgtgttcgcttacataaagtattataatatgattataggaaagaaggtgttcttatgtggaaaaaatatttttcaaaatataaatggacggatttattttggattctatttgttattttaacatgcctcttggcgggtaatagtaatctttacccccttacccatcaagaaatctcttatcatgggtgcttatcgggaattacacttgccttatttcacttgctatttattgataagttttttatttcgaatcgaaaataaatggagaagctaaaagctttaaatgttttagacttttgggatagatagtttaaaaattgaaatttaaaaccgcagatcttcttgaaatgcggttttttgtgtcaa

Mask Tandem Repeat Region ================================================
ttgacacaaaaaaccgcatttcaagaagatctgcggttttaaatttcaatttttaaactatctatcccaaaagtctaaaacatttaaagcttttagcttctccatttattttcgattcgaaataaaaaacttatcaataaatagcaagtgaaataaggcaagtgtaattcccgataagcacccatgataagagatttcttgatgggtaagggggtaaagattactattacccgccaagaggcatgttaaaataacaaatagaatccaaaataaatccgtccatttatattttgaaaaatattttttccacataagaacaccttctttcctataatcatattataatactttatgtaagcgaacacaagaaatttgaggtaatttttaagtagatttcgaggcttaaaggttgtaaaaccagcattttaagcgttcaatgtgtctatgatttctctctttttaattcaagattgactcaaatccacagcattcaaaaaaagcgaatttcaatcgaaattcgctttataggaaagtgtattagtataaatcttgtatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta

Find is-nt database================================================
Query_seq: SMT_1139:SMT_1140|SMT_1139:SMT_1140:rRNA (guanine-N1-)-methyltransferase:glycogen phosphorylase:-><-:1080744..1081405 662
ttgacacaaaaaaccgcatttcaagaagatctgcggttttaaatttcaatttttaaactatctatcccaaaagtctaaaacatttaaagcttttagcttctccatttattttcgattcgaaataaaaaacttatcaataaatagcaagtgaaataaggcaagtgtaattcccgataagcacccatgataagagatttcttgatgggtaagggggtaaagattactattacccgccaagaggcatgttaaaataacaaatagaatccaaaataaatccgtccatttatattttgaaaaatattttttccacataagaacaccttctttcctataatcatattataatactttatgtaagcgaacacaagaaatttgaggtaatttttaagtagatttcgaggcttaaaggttgtaaaaccagcattttaagcgttcaatgtgtctatgatttctctctttttaattcaagattgactcaaatccacagcattcaaaaaaagcgaatttcaatcgaaattcgctttataggaaagtgtattagtataaatcttgtatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: SMT_1139:SMT_1140|SMT_1139:SMT_1140:rRNA (guanine-N1-)-methyltransferase:glycogen phosphorylase:-><-:1080744..1081405 662
ttgacacaaaaaaccgcatttcaagaagatctgcggttttaaatttcaatttttaaactatctatcccaaaagtctaaaacatttaaagcttttagcttctccatttattttcgattcgaaataaaaaacttatcaataaatagcaagtgaaataaggcaagtgtaattcccgataagcacccatgataagagatttcttgatgggtaagggggtaaagattactattacccgccaagaggcatgttaaaataacaaatagaatccaaaataaatccgtccatttatattttgaaaaatattttttccacataagaacaccttctttcctataatcatattataatactttatgtaagcgaacacaagaaatttgaggtaatttttaagtagatttcgaggcttaaaggttgtaaaaccagcattttaagcgttcaatgtgtctatgatttctctctttttaattcaagattgactcaaatccacagcattcaaaaaaagcgaatttcaatcgaaattcgctttataggaaagtgtattagtataaatcttgtatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find nr database================================================
Query_seq: SMT_1139:SMT_1140|SMT_1139:SMT_1140:rRNA (guanine-N1-)-methyltransferase:glycogen phosphorylase:-><-:1080744..1081405 662
ttgacacaaaaaaccgcatttcaagaagatctgcggttttaaatttcaatttttaaactatctatcccaaaagtctaaaacatttaaagcttttagcttctccatttattttcgattcgaaataaaaaacttatcaataaatagcaagtgaaataaggcaagtgtaattcccgataagcacccatgataagagatttcttgatgggtaagggggtaaagattactattacccgccaagaggcatgttaaaataacaaatagaatccaaaataaatccgtccatttatattttgaaaaatattttttccacataagaacaccttctttcctataatcatattataatactttatgtaagcgaacacaagaaatttgaggtaatttttaagtagatttcgaggcttaaaggttgtaaaaccagcattttaagcgttcaatgtgtctatgatttctctctttttaattcaagattgactcaaatccacagcattcaaaaaaagcgaatttcaatcgaaattcgctttataggaaagtgtattagtataaatcttgtatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
Intra-Species Hit: Count: 0

Inter-species Hit: Count: 1	Min: 109	Max: 312	Len: 204
Subject: UniRef90_Q97ND9 Cluster: Hypothetical protein; n=3; Streptococcus pneumoniae|Rep: Hypothetical protein - Streptococcus pneumoniae
HSP  1	e-value: 1.0E-22	bit: 108.0	Len: 204	Query Start:109	Query End:312	Subject Strand: null	Subject Start: 1	Subject End: 68
............................................................................................................ M  W  K  K  Y  F  S  K  Y  K  W  T  D  L  F  W  I  L  F  V  I  L  T  C  L  L  A  G  N  S  N  L  Y  P  L  T  H  Q  E  I  S  Y  H  G  C  L  S  G  I  T  L  A  L  F  H  L  L  F  I  D  K  F  F  I  S  N  R  K ..............................................................................................................................................................................................................................................................................................................................................................
............................................................................................................ M  L  K  K  Y  F  S  K  Y  K  W  T  D  L  F  W  I  L  F  V  I  L  T  C  L  Y  I  G  N  H  D  L  F  T  L  N  H  Q  E  F  S  F  R  G  S  V  W  G  L  V  L  A  L  Y  H  L  L  F  I  D  K  F  V  I  S  N  R  K ..............................................................................................................................................................................................................................................................................................................................................................


ttgacacaaaaaaccgcatttcaagaagatctgcggttttaaatttcaatttttaaactatctatcccaaaagtctaaaacatttaaagcttttagcttctccatttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagaacaccttctttcctataatcatattataatactttatgtaagcgaacacaagaaatttgaggtaatttttaagtagatttcgaggcttaaaggttgtaaaaccagcattttaagcgttcaatgtgtctatgatttctctctttttaattcaagattgactcaaatccacagcattcaaaaaaagcgaatttcaatcgaaattcgctttataggaaagtgtattagtataaatcttgtatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
Predict ORF larger than 30AA ================================================
Protein_Len: 40	Strand: +	Start: 29	End: 148
............................ M  C  G  F  K  F  Q  F  L  N  Y  L  S  Q  K  S  K  T  F  K  A  F  S  F  S  I  Y  F  R  F  E  I  K  N  L  S  I  N  S  K ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 58	Strand: +	Start: 393	End: 566
........................................................................................................................................................................................................................................................................................................................................................................................................ M  S  R  L  K  G  C  K  T  S  I  L  S  V  Q  C  V  Y  D  F  S  L  F  N  S  R  L  T  Q  I  H  S  I  Q  K  K  R  I  S  I  E  I  R  F  I  G  K  C  I  S  I  N  L  V  S  Y  T  Q ................................................................................................
Protein_Len: 35	Strand: -	Start: 541	End: 645
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Y  L  D  Q  I  K  Y  E  I  F  I  L  S  C  V  L  F  S  A  A  P  Q  V  Q  T  R  C  P  L  A  S  T  T  Q  M .................
Protein_Len: 39	Strand: -	Start: 249	End: 365
........................................................................................................................................................................................................................................................ F  L  L  Y  F  G  F  Y  I  R  G  N  I  N  Q  F  I  N  K  G  C  L  F  V  K  K  G  I  I  M  N  Y  Y  K  I  Y  A  F  M .........................................................................................................................................................................................................................................................................................................
Protein_Len: 60	Strand: -	Start: 109	End: 312
............................................................................................................ D  I  F  L  L  H  F  L  A  L  T  I  G  S  L  C  G  H  Y  S  I  E  Q  H  T  L  P  Y  L  N  S  N  G  A  L  L  C  T  L  I  V  F  L  I  W  F  L  D  T  W  K  Y  K  S  F  Y  K  K  W  M ..............................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 44	Strand: -	Start: 96	End: 227
............................................................................................... S  R  W  K  N  E  I  R  F  L  F  S  I  L  L  Y  C  T  F  Y  P  L  H  L  E  R  Y  A  G  M  I  L  S  K  K  I  P  L  P  T  F  I  V  M ...................................................................................................................................................................................................................................................................................................................................................................................................................................................

ttgacacaaaaaaccgcatttcaagaagatctgcggttttaaatttcaatttttaaactatctatcccaaaagtctaaaacatttaaagcttttagcttctccatttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagaacaccttctttcctataatcatattataatactttatgtaagcgaacacaagaaatttgaggtaatttttaagtagatttcgaggcttaaaggttgtaaaaccagcattttaagcgttcaatgtgtctatgatttctctctttttaattcaagattgactcaaatccacagcattcaaaaaaagcgaatttcaatcgaaattcgctttataggaaagtgtattagtataaatcttgtatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================
PromScan Matrix: RpoD-17	Strand: -	Score: 81	Start: 339	End: 368
..................................................................................................................................................................................................................................................................................................................................................CTTGTGTTCGCTTACATAAAGTATTATAAT......................................................................................................................................................................................................................................................................................................

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

ttgacacaaaaaaccgcatttcaagaagatctgcggttttaaatttcaatttttaaactatctatcccaaaagtctaaaacatttaaagcttttagcttctccatttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagaacaccttctttcctataatcatattataatactttatgtaagcgaacacaagaaatttgaggtaatttttaagtagatttcgaggcttaaaggttgtaaaaccagcattttaagcgttcaatgtgtctatgatttctctctttttaattcaagattgactcaaatccacagcattcaaaaaaagcgaatttcaatcgaaattcgctttataggaaagtgtattagtataaatcttgtatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
Predict TransTerm conf > 70================================================
TransTerm Strand: +	Conf: 100	HP_score: -11.7	Tail_Score: -3.86524	Start: 500	End: 521	Full_Region: CAGCATTCAAAAAAA GCGAATTTC AATC GAAATTCGC TTTATAGGAAAGTGT
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAATTTCAATCGAAATTCGC.............................................................................................................................................
TransTerm Strand: -	Conf: 100	HP_score: -11.7	Tail_Score: -5.48825	Start: 500	End: 521	Full_Region: acactttcctataaa gcgaatttc gatt gaaattcgc tttttttgaatgctg
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcgaatttcgattgaaattcgc.............................................................................................................................................

Find igs database================================================
Query_seq: SMT_1139:SMT_1140|SMT_1139:SMT_1140:rRNA (guanine-N1-)-methyltransferase:glycogen phosphorylase:-><-:1080744..1081405 662
ttgacacaaaaaaccgcatttcaagaagatctgcggttttaaatttcaatttttaaactatctatcccaaaagtctaaaacatttaaagcttttagcttctccatttannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaagaacaccttctttcctataatcatattataatactttatgtaagcgaacacaagaaatttgaggtaatttttaagtagatttcgaggcttaaaggttgtaaaaccagcattttaagcgttcaatgtgtctatgatttctctctttttaattcaagattgactcaaatccacagcattcaaaaaaagcgaatttcaatcgaaattcgctttataggaaagtgtattagtataaatcttgtatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
Intra-Species Hit: Count: 38	Min: 1	Max: 662	Len: 662
Subject: smit_SMT_1139_SMT_1140|rRNA (guanine-N1-)-methyltransferase:glycogen phosphorylase|POSITIVE:NEGATIVE|[1080744,1081405]|662
HSP  1	e-value: 0.0	bit: 652.0	Len: 350	Query Start:313	Query End:662	Subject Strand: POSITIVE	Subject Start: 313	Subject End: 662
........................................................................................................................................................................................................................................................................................................................aagaacaccttctttcctataatcatattataatactttatgtaagcgaacacaagaaatttgaggtaatttttaagtagatttcgaggcttaaaggttgtaaaaccagcattttaagcgttcaatgtgtctatgatttctctctttttaattcaagattgactcaaatccacagcattcnnnnnnngcgaatttcaatcgaaattcgctttataggaaagtgtattagtataaatcttgtatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
........................................................................................................................................................................................................................................................................................................................aagaacaccttctttcctataatcatattataatactttatgtaagcgaacacaagaaatttgaggtaatttttaagtagatttcgaggcttaaaggttgtaaaaccagcattttaagcgttcaatgtgtctatgatttctctctttttaattcaagattgactcaaatccacagcattcaaaaaaagcgaatttcaatcgaaattcgctttataggaaagtgtattagtataaatcttgtatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
HSP  2	e-value: 3.0E-54	bit: 214.0	Len: 108	Query Start:1	Query End:108	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 108
ttgacacaaaaaaccgcatttcaagaagatctgcggttttaaatttcaatttttaaactatctatcccaaaagtctaaaacatttaaagcttttagcttctccattta..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
ttgacacaaaaaaccgcatttcaagaagatctgcggttttaaatttcaatttttaaactatctatcccaaaagtctaaaacatttaaagcttttagcttctccattta..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

Subject: smit_SMT_1963_SMT_1964|ribonuclease BN, putative:sodium/hydrogen exchanger family protein|NEGATIVE:NEGATIVE|[1896553,1896685]|133
HSP  1	e-value: 7.0E-49	bit: 196.0	Len: 109	Query Start:554	Query End:662	Subject Strand: POSITIVE	Subject Start: 21	Subject End: 129
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta

Subject: smit_SMT_482_SMT_483|hypothetical protein predicted by Glimmer/Critica:transcriptional activator TipA, putative|NEGATIVE:POSITIVE|[418627,418966]|340
HSP  1	e-value: 7.0E-49	bit: 196.0	Len: 107	Query Start:556	Query End:662	Subject Strand: NEGATIVE	Subject Start: 225	Subject End: 331
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta

Subject: smit_SMT_1809_SMT_1810|MutT/NUDIX family protein:hypothetical protein|POSITIVE:POSITIVE|[1785195,1785358]|164
HSP  1	e-value: 3.0E-48	bit: 194.0	Len: 106	Query Start:557	Query End:662	Subject Strand: NEGATIVE	Subject Start: 1	Subject End: 106
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta

Subject: smit_SMT_1068_SMT_1069|ATP-dependent DNA helicase RecG:acetyl xylan esterase, putative|POSITIVE:POSITIVE|[1009047,1009469]|423
HSP  1	e-value: 1.0E-47	bit: 192.0	Len: 109	Query Start:554	Query End:662	Subject Strand: POSITIVE	Subject Start: 16	Subject End: 124
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta

Subject: smit_SMT_1534_SMT_1535|signal peptidase I:exodeoxyribonuclease V alpha chain|POSITIVE:POSITIVE|[1517973,1518206]|234
HSP  1	e-value: 7.0E-46	bit: 186.0	Len: 106	Query Start:557	Query End:662	Subject Strand: POSITIVE	Subject Start: 97	Subject End: 202
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcgaaactgacgtggtttgaatttgattttcgaagagta

Subject: smit_SMT_1393_SMT_1394|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:POSITIVE|[1369621,1370215]|595
HSP  1	e-value: 7.0E-46	bit: 186.0	Len: 106	Query Start:557	Query End:662	Subject Strand: NEGATIVE	Subject Start: 153	Subject End: 258
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta

Subject: smit_SMT_1138_SMT_1139|hypothetical protein:rRNA (guanine-N1-)- methyltransferase|NEGATIVE:POSITIVE|[1079638, 1079894]|257
HSP  1	e-value: 7.0E-46	bit: 186.0	Len: 106	Query Start:557	Query End:662	Subject Strand: POSITIVE	Subject Start: 73	Subject End: 178
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta

Subject: smit_SMT_662_SMT_663|A/G-specific adenine glycosylase:phosphate acetyltransferase|NEGATIVE:NEGATIVE|[573918,574105]|188
HSP  1	e-value: 7.0E-46	bit: 186.0	Len: 106	Query Start:557	Query End:662	Subject Strand: NEGATIVE	Subject Start: 50	Subject End: 155
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta

Subject: smit_SMT_2133_SMT_2134|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[2014098,2014211]|114
HSP  1	e-value: 1.0E-44	bit: 182.0	Len: 100	Query Start:563	Query End:662	Subject Strand: NEGATIVE	Subject Start: 15	Subject End: 114
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta

Subject: smit_SMT_2108_SMT_2109|adenylosuccinate lyase:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1998942,1999150]|209
HSP  1	e-value: 1.0E-44	bit: 182.0	Len: 108	Query Start:555	Query End:662	Subject Strand: POSITIVE	Subject Start: 102	Subject End: 209
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta

Subject: smit_SMT_1601_SMT_1602|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|POSITIVE:POSITIVE|[1592204,1592524]|321
HSP  1	e-value: 1.0E-44	bit: 182.0	Len: 104	Query Start:559	Query End:662	Subject Strand: NEGATIVE	Subject Start: 192	Subject End: 295
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta

Subject: smit_SMT_1179_SMT_1180|aldose 1-epimerase:putative tagatose-6-phosphate aldose/ketose isomerase|NEGATIVE:NEGATIVE|[1137945,1138125]|181
HSP  1	e-value: 1.0E-44	bit: 182.0	Len: 108	Query Start:555	Query End:662	Subject Strand: POSITIVE	Subject Start: 74	Subject End: 181
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta

Subject: smit_SMT_872_SMT_873|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[820709,820822]|114
HSP  1	e-value: 1.0E-44	bit: 182.0	Len: 100	Query Start:563	Query End:662	Subject Strand: NEGATIVE	Subject Start: 15	Subject End: 114
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta

Subject: smit_SMT_384_SMT_385|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[319921,320034]|114
HSP  1	e-value: 1.0E-44	bit: 182.0	Len: 100	Query Start:563	Query End:662	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta

Subject: smit_SMT_1670_SMT_1671|K02030 polar amino acid transport system substrate-binding protein:hypothetical protein|POSITIVE:NEGATIVE|[1659356,1659481]|126
HSP  1	e-value: 4.0E-44	bit: 180.0	Len: 103	Query Start:560	Query End:662	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 103
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta

Subject: smit_SMT_826_SMT_827|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[750113,750528]|416
HSP  1	e-value: 4.0E-44	bit: 180.0	Len: 107	Query Start:556	Query End:662	Subject Strand: NEGATIVE	Subject Start: 106	Subject End: 212
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggttgtactggagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta

Subject: smit_SMT_890_SMT_891|K02029 polar amino acid transport system permease protein:oxidoreductase, putative|POSITIVE:POSITIVE|[837753,837989]|237
HSP  1	e-value: 2.0E-43	bit: 178.0	Len: 106	Query Start:557	Query End:662	Subject Strand: NEGATIVE	Subject Start: 1	Subject End: 106
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagacgcaggctgtacttgagtacggcaaggtgaagctgacgtggtttgaatttgattttcgaagagta

Subject: smit_SMT_259_SMT_260|dipeptide/tripeptide permease:phage transcriptional repressor|POSITIVE:POSITIVE|[199242,199609]|368
HSP  1	e-value: 2.0E-43	bit: 178.0	Len: 106	Query Start:557	Query End:662	Subject Strand: NEGATIVE	Subject Start: 105	Subject End: 210
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagta

Subject: smit_SMT_698_SMT_699|uracil permease:K03106 signal recognition particle, subunit SRP54|POSITIVE:NEGATIVE|[609830,610030]|201
HSP  1	e-value: 3.0E-42	bit: 174.0	Len: 104	Query Start:559	Query End:662	Subject Strand: NEGATIVE	Subject Start: 1	Subject End: 104
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagaacaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta

Subject: smit_SMT_129_SMT_130|putative glycosyltransferase:capsular polysaccharide biosynthesis protein|POSITIVE:POSITIVE|[80944,81134]|191
HSP  1	e-value: 3.0E-42	bit: 174.0	Len: 104	Query Start:557	Query End:660	Subject Strand: NEGATIVE	Subject Start: 55	Subject End: 158
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagag..
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcggtttgaatttgattttcgaagag..

Subject: smit_SMT_1766_SMT_1767|sucrose-6-phosphate hydrolase:oxidoreductase, short chain dehydrogenase/reductase family|POSITIVE:NEGATIVE|[1743162,1743332]|171
HSP  1	e-value: 1.0E-41	bit: 172.0	Len: 107	Query Start:556	Query End:662	Subject Strand: NEGATIVE	Subject Start: 8	Subject End: 114
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatactcaatgaaaatcaaagagcaaactaggaagctagtcgcaagctgtacttgagtacggtgaggcgacgctgacgtggtttgaatttgattttcgaagagta

Subject: smit_SMT_1476_SMT_1477|thiol peroxidase:K02077 zinc/manganese transport system substrate-binding protein|NEGATIVE:NEGATIVE|[1459310,1459536]|227
HSP  1	e-value: 1.0E-41	bit: 172.0	Len: 107	Query Start:556	Query End:662	Subject Strand: POSITIVE	Subject Start: 122	Subject End: 227
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatactcaatgaaaatcaaagagcaaactaggaagctagccacaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaa-gagattttcgaagagta

Subject: smit_SMT_1781_SMT_1782|transcriptional regulator, xre family:hypothetical protein|POSITIVE:POSITIVE|[1759357,1759659]|303
HSP  1	e-value: 6.0E-40	bit: 167.0	Len: 104	Query Start:559	Query End:662	Subject Strand: NEGATIVE	Subject Start: 177	Subject End: 280
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgaaggctgtacttgagtacggcaaggtgaagctgacgtagtttgaatttgattttcgaagagta

Subject: smit_SMT_442_SMT_443|transcriptional regulator, putative:hydroxyethylthiazole kinase|POSITIVE:POSITIVE|[382461,382694]|234
HSP  1	e-value: 6.0E-40	bit: 167.0	Len: 104	Query Start:557	Query End:660	Subject Strand: NEGATIVE	Subject Start: 39	Subject End: 142
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagag..
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatgctcaatgaaaatcaaagagcaaactaggaagctagccgtaggctgtacttgagtacggcaaggtgaagctgacgtggtttgaatttgattttcgaagag..

Subject: smit_SMT_1487_SMT_1488|hypothetical protein:K06147 ATP-binding cassette, subfamily B, bacterial|POSITIVE:POSITIVE|[1467137,1467296]|160
HSP  1	e-value: 2.0E-37	bit: 159.0	Len: 104	Query Start:559	Query End:662	Subject Strand: NEGATIVE	Subject Start: 19	Subject End: 122
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtactcgagtacggcaaggcgacgttgacgcagtttgaatttgattttcgaagagta

Subject: smit_SMT_833_SMT_834|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|NEGATIVE:NEGATIVE|[775453,775606]|154
HSP  1	e-value: 2.0E-36	bit: 155.0	Len: 106	Query Start:557	Query End:662	Subject Strand: POSITIVE	Subject Start: 50	Subject End: 154
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagta

Subject: smit_SMT_798_SMT_799|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[707167,707385]|219
HSP  1	e-value: 2.0E-36	bit: 155.0	Len: 106	Query Start:557	Query End:662	Subject Strand: POSITIVE	Subject Start: 112	Subject End: 216
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggtgaagctgacgtggtttgaa-gagattttcgaagagta

Subject: smit_SMT_915_SMT_916|sucrose operon repressor:3-hydroxy-3-methylglutaryl-CoA reductase|POSITIVE:NEGATIVE|[868680,868819]|140
HSP  1	e-value: 1.0E-34	bit: 149.0	Len: 107	Query Start:556	Query End:662	Subject Strand: NEGATIVE	Subject Start: 1	Subject End: 106
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatactcaatgaaaatcaaagagcgaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta

Subject: smit_SMT_1535_SMT_1536|exodeoxyribonuclease V alpha chain:trigger factor|POSITIVE:NEGATIVE|[1520574,1520725]|152
HSP  1	e-value: 9.0E-33	bit: 143.0	Len: 104	Query Start:559	Query End:662	Subject Strand: POSITIVE	Subject Start: 45	Subject End: 147
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccacaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta

Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337
HSP  1	e-value: 5.0E-28	bit: 127.0	Len: 104	Query Start:559	Query End:662	Subject Strand: POSITIVE	Subject Start: 257	Subject End: 359
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagatcaaactaggaagctagccgtagtcagtacttgagtacggcaaggcgaagctgacgtggtttgaa-gagattttcgaagagta

Subject: smit_SMT_1689_SMT_1690|PTS enzyme, maltose-and glucose-specific, factor II homologue:K06148 ATP-binding cassette, subfamily C, bacterial|POSITIVE:NEGATIVE|[1673200,1673459]|260
HSP  1	e-value: 1.0E-22	bit: 109.0	Len: 103	Query Start:560	Query End:662	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 102
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tactcaatgaaaatcaaagagcaaactgggaagctaggcgcaggctatacttgagtacgccaaggcgaagctggcatggtttgaa-gagattttcgaagagta

Subject: smit_SMT_1814_SMT_1815|amino acid transporter:K02035 peptide/nickel transport system substrate-binding protein|POSITIVE:NEGATIVE|[1788701,1788988]|288
HSP  1	e-value: 3.0E-20	bit: 101.0	Len: 51	Query Start:556	Query End:606	Subject Strand: POSITIVE	Subject Start: 65	Subject End: 115
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg........................................................
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg........................................................
HSP  2	e-value: 2.0E-6	bit: 56.0	Len: 48	Query Start:615	Query End:662	Subject Strand: POSITIVE	Subject Start: 216	Subject End: 262
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggtaaggcaacgctgacgtggtttgaa-gagattttcgaagagta

Subject: smit_SMT_365_SMT_366|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[301808,302224]|417
HSP  1	e-value: 5.0E-16	bit: 87.7	Len: 48	Query Start:559	Query End:606	Subject Strand: NEGATIVE	Subject Start: 347	Subject End: 394
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg........................................................
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctggccgcaggctg........................................................
HSP  2	e-value: 7.0E-9	bit: 63.9	Len: 48	Query Start:615	Query End:662	Subject Strand: NEGATIVE	Subject Start: 245	Subject End: 291
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggcaaggcaacgctgacgtggtttgaa-gagattttcgaagagta

Subject: smit_SMT_217_SMT_218|hypothetical protein:undecaprenyl pyrophosphate synthetase|POSITIVE:POSITIVE|[149949,150294]|346
HSP  1	e-value: 3.0E-14	bit: 81.8	Len: 45	Query Start:559	Query End:603	Subject Strand: POSITIVE	Subject Start: 158	Subject End: 202
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcagg...........................................................
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagaccaaactaggaagctagccgcagg...........................................................
HSP  2	e-value: 4.0E-10	bit: 67.9	Len: 34	Query Start:629	Query End:662	Subject Strand: POSITIVE	Subject Start: 237	Subject End: 270
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctgacgtggtttgaatttgattttcgaagagta
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gctgacgtggtttgaatttgattttcgaagagta

Subject: smit_SMT_1544_SMT_1545|mevalonate kinase:choline-binding protein|NEGATIVE:NEGATIVE|[1528975,1529249]|275
HSP  1	e-value: 1.0E-13	bit: 79.8	Len: 48	Query Start:615	Query End:662	Subject Strand: POSITIVE	Subject Start: 136	Subject End: 183
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta
HSP  2	e-value: 2.0E-9	bit: 65.9	Len: 45	Query Start:559	Query End:603	Subject Strand: POSITIVE	Subject Start: 33	Subject End: 77
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcagg...........................................................
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaaaagcaaactatgaagctacccgcagg...........................................................

Subject: smit_SMT_1200_SMT_1201|K06148 ATP-binding cassette, subfamily C, bacterial:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1163326,1163854]|529
HSP  1	e-value: 1.0E-13	bit: 79.8	Len: 48	Query Start:559	Query End:606	Subject Strand: POSITIVE	Subject Start: 14	Subject End: 61
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg........................................................
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactagaaaactagccgcaggctg........................................................
HSP  2	e-value: 1.0E-13	bit: 79.8	Len: 48	Query Start:615	Query End:662	Subject Strand: POSITIVE	Subject Start: 116	Subject End: 163
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta

Subject: smit_SMT_912_SMT_913|fructokinase:putative sucrose-specific PTS permease, enzyme II|NEGATIVE:NEGATIVE|[863711,864012]|302
HSP  1	e-value: 1.0E-13	bit: 79.8	Len: 40	Query Start:560	Query End:599	Subject Strand: POSITIVE	Subject Start: 152	Subject End: 191
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tactcaatgaaaatcaaagagcaaactaggaagctagccg...............................................................
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tactcaatgaaaatcaaagagcaaactaggaagctagccg...............................................................
HSP  2	e-value: 3.0E-11	bit: 71.9	Len: 48	Query Start:615	Query End:662	Subject Strand: POSITIVE	Subject Start: 255	Subject End: 302
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggcaaggcgaagctgacatggtttgaatttgattttcgaagagta


Inter-species Hit: Count: 30	Min: 316	Max: 662	Len: 347
Subject: NC_003028_SP_1180_SP_1181|ribonucleotide-diphosphate reductase beta subunit:hypothetical protein|POSITIVE:NEGATIVE|[1119540,1119753]|214
HSP  1	e-value: 3.0E-48	bit: 194.0	Len: 106	Query Start:557	Query End:662	Subject Strand: NEGATIVE	Subject Start: 1	Subject End: 106
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta

Subject: NC_003028_SP_2183_SP_2184|hypothetical protein:glycerol uptake facilitator protein|NEGATIVE:NEGATIVE|[2101749,2102044]|296
HSP  1	e-value: 1.0E-44	bit: 182.0	Len: 104	Query Start:559	Query End:662	Subject Strand: POSITIVE	Subject Start: 189	Subject End: 292
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta

Subject: NC_003028_SP_0280_SP_0281|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258312,258528]|217
HSP  1	e-value: 1.0E-44	bit: 182.0	Len: 104	Query Start:559	Query End:662	Subject Strand: POSITIVE	Subject Start: 10	Subject End: 113
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta

Subject: NC_003028_SP_0816_SP_0817|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[768501,768664]|164
HSP  1	e-value: 2.0E-43	bit: 178.0	Len: 106	Query Start:557	Query End:662	Subject Strand: POSITIVE	Subject Start: 59	Subject End: 164
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctatacttgagtacggtaaggcgacgctgacgtggtttgaattttattttcgaagagta

Subject: NC_003028_SP_1472_SP_1473|oxidoreductase, putative:hypothetical protein|POSITIVE:NEGATIVE|[1386055,1386276]|222
HSP  1	e-value: 6.0E-43	bit: 176.0	Len: 105	Query Start:558	Query End:662	Subject Strand: POSITIVE	Subject Start: 115	Subject End: 219
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttaagtacggcaaggtgaagctgacgtggtttgaatttgattttcgaagagta

Subject: NC_003028_SP_0096_SP_0097|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[98992,99168]|177
HSP  1	e-value: 1.0E-41	bit: 172.0	Len: 103	Query Start:560	Query End:662	Subject Strand: POSITIVE	Subject Start: 69	Subject End: 171
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgaagctgacgtggtttgaatttgatttttgaagagta

Subject: NC_008533_SPD_1551_SPD_1552|prevent-host-death family protein:hypothetical protein|NEGATIVE:NEGATIVE|[1574500,1574730]|231
HSP  1	e-value: 4.0E-41	bit: 170.0	Len: 106	Query Start:557	Query End:662	Subject Strand: POSITIVE	Subject Start: 85	Subject End: 190
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcgatttgaatttgattttcgaagagta

Subject: NC_008533_SPD_0546_SPD_0547|branched-chain amino acid transport system II carrier protein:hypothetical protein|POSITIVE:POSITIVE|[559539,559741]|203
HSP  1	e-value: 4.0E-41	bit: 170.0	Len: 106	Query Start:557	Query End:662	Subject Strand: NEGATIVE	Subject Start: 8	Subject End: 113
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacgacaaggcgacgttgacgcggtttgaatttgattttcgaagagta

Subject: NC_003098_spr1586_spr1587|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1567002,1567199]|198
HSP  1	e-value: 4.0E-41	bit: 170.0	Len: 106	Query Start:557	Query End:662	Subject Strand: POSITIVE	Subject Start: 52	Subject End: 157
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcgatttgaatttgattttcgaagagta

Subject: NC_003098_spr0551_spr0552|Branched-chain amino acid transport system carrier protein:hypothetical protein|POSITIVE:POSITIVE|[552009,552211]|203
HSP  1	e-value: 4.0E-41	bit: 170.0	Len: 106	Query Start:557	Query End:662	Subject Strand: NEGATIVE	Subject Start: 8	Subject End: 113
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacgacaaggcgacgttgacgcggtttgaatttgattttcgaagagta

Subject: NC_003028_SP_1741_SP_1742|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1645558,1645794]|237
HSP  1	e-value: 4.0E-41	bit: 170.0	Len: 106	Query Start:557	Query End:662	Subject Strand: POSITIVE	Subject Start: 91	Subject End: 196
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcgatttgaatttgattttcgaagagta

Subject: NC_008533_SPD_0714_SPD_0715|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[729726,729889]|164
HSP  1	e-value: 1.0E-38	bit: 163.0	Len: 106	Query Start:557	Query End:662	Subject Strand: POSITIVE	Subject Start: 59	Subject End: 164
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctatacttgagtacggtaaggcgacgcttacgtgatttgaattttattttcgaagagta

Subject: NC_003098_spr0720_spr0721|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[722195,722358]|164
HSP  1	e-value: 1.0E-38	bit: 163.0	Len: 106	Query Start:557	Query End:662	Subject Strand: POSITIVE	Subject Start: 59	Subject End: 164
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctatacttgagtacggtaaggcgacgcttacgtgatttgaattttattttcgaagagta

Subject: NC_008533_SPD_1931_SPD_1932|hypothetical protein:maltodextrin phosphorylase|POSITIVE:NEGATIVE|[1902224,1903267]|1044
HSP  1	e-value: 4.0E-38	bit: 161.0	Len: 190	Query Start:414	Query End:603	Subject Strand: POSITIVE	Subject Start: 791	Subject End: 977
.............................................................................................................................................................................................................................................................................................................................................................................................................................aaaaccagcattttaagcgttcaatgtgtctatgatttctctctttttaattcaagattgactcaaatccacagcattcnnnnnnngcgaatttcaatcgaaattcgctttataggaaagtgtattagtataaatcttgtatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcagg...........................................................
.............................................................................................................................................................................................................................................................................................................................................................................................................................aaaaccagcatttaaagccttcactgtatctaggatttccctatttttaga-caagattgacccaaatccacagcatt-taaaaaagcgaatttcaatcgaaactcgcttttttacaaaatgtattagtataaat-ttgtatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcagg...........................................................
HSP  2	e-value: 3.0E-17	bit: 91.7	Len: 66	Query Start:316	Query End:381	Subject Strand: POSITIVE	Subject Start: 691	Subject End: 756
...........................................................................................................................................................................................................................................................................................................................aacaccttctttcctataatcatattataatactttatgtaagcgaacacaagaaatttgaggtaa.........................................................................................................................................................................................................................................................................................
...........................................................................................................................................................................................................................................................................................................................aacaccttctttcctacaattatattataatactttatgtaagcgaatacaagagatatgaggtaa.........................................................................................................................................................................................................................................................................................

Subject: NC_003098_spr1915_spr1916|hypothetical protein:Maltodextrin phosphorylase|POSITIVE:NEGATIVE|[1894692,1895735]|1044
HSP  1	e-value: 4.0E-38	bit: 161.0	Len: 190	Query Start:414	Query End:603	Subject Strand: POSITIVE	Subject Start: 791	Subject End: 977
.............................................................................................................................................................................................................................................................................................................................................................................................................................aaaaccagcattttaagcgttcaatgtgtctatgatttctctctttttaattcaagattgactcaaatccacagcattcnnnnnnngcgaatttcaatcgaaattcgctttataggaaagtgtattagtataaatcttgtatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcagg...........................................................
.............................................................................................................................................................................................................................................................................................................................................................................................................................aaaaccagcatttaaagccttcactgtatctaggatttccctatttttaga-caagattgacccaaatccacagcatt-taaaaaagcgaatttcaatcgaaactcgcttttttacaaaatgtattagtataaat-ttgtatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcagg...........................................................
HSP  2	e-value: 3.0E-17	bit: 91.7	Len: 66	Query Start:316	Query End:381	Subject Strand: POSITIVE	Subject Start: 691	Subject End: 756
...........................................................................................................................................................................................................................................................................................................................aacaccttctttcctataatcatattataatactttatgtaagcgaacacaagaaatttgaggtaa.........................................................................................................................................................................................................................................................................................
...........................................................................................................................................................................................................................................................................................................................aacaccttctttcctacaattatattataatactttatgtaagcgaatacaagagatatgaggtaa.........................................................................................................................................................................................................................................................................................

Subject: NC_008533_SPD_0260_SPD_0261|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258814,259029]|216
HSP  1	e-value: 4.0E-35	bit: 151.0	Len: 104	Query Start:559	Query End:662	Subject Strand: POSITIVE	Subject Start: 10	Subject End: 112
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagta

Subject: NC_003028_SP_0292_SP_0293|bifunctional folate synthesis protein:hypothetical protein|POSITIVE:NEGATIVE|[271230,271378]|149
HSP  1	e-value: 1.0E-34	bit: 149.0	Len: 103	Query Start:560	Query End:662	Subject Strand: NEGATIVE	Subject Start: 48	Subject End: 149
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta

Subject: NC_008533_SPD_0991_SPD_0992|ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1002301,1002645]|345
HSP  1	e-value: 9.0E-33	bit: 143.0	Len: 104	Query Start:559	Query End:662	Subject Strand: NEGATIVE	Subject Start: 146	Subject End: 249
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaattaaagtgcaaactaggaagttagccgcaggctgtacttgagtacggcaaggtgaaattgacgtggtttgaatttgattttcgaagagta

Subject: NC_003098_spr1014_spr1015|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[994770,995114]|345
HSP  1	e-value: 9.0E-33	bit: 143.0	Len: 104	Query Start:559	Query End:662	Subject Strand: NEGATIVE	Subject Start: 146	Subject End: 249
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaattaaagtgcaaactaggaagttagccgcaggctgtacttgagtacggcaaggtgaaattgacgtggtttgaatttgattttcgaagagta

Subject: NC_003028_SP_2105_SP_2106|hypothetical protein:glycogen phosphorylase family protein|POSITIVE:NEGATIVE|[2015357,2016398]|1042
HSP  1	e-value: 9.0E-33	bit: 143.0	Len: 189	Query Start:414	Query End:602	Subject Strand: POSITIVE	Subject Start: 791	Subject End: 975
.............................................................................................................................................................................................................................................................................................................................................................................................................................aaaaccagcattttaagcgttcaatgtgtctatgatttctctctttttaattcaagattgactcaaatccacagcattcnnnnnnngcgaatttcaatcgaaattcgctttataggaaagtgtattagtataaatcttgtatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcag............................................................
.............................................................................................................................................................................................................................................................................................................................................................................................................................aaaaccagcatttaaagccttcactgtatctaggatttccctatttttaga-caagattgacccaaatctacatcatt--aaaaaagcgaatttcaatcgaaactcgcttttttacaaaatgtattagtataaat-ttgtatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcag............................................................
HSP  2	e-value: 4.0E-13	bit: 77.8	Len: 47	Query Start:316	Query End:362	Subject Strand: POSITIVE	Subject Start: 691	Subject End: 737
...........................................................................................................................................................................................................................................................................................................................aacaccttctttcctataatcatattataatactttatgtaagcgaa............................................................................................................................................................................................................................................................................................................
...........................................................................................................................................................................................................................................................................................................................aacaccttctttcctacaattatattataatactttatgtaagcgaa............................................................................................................................................................................................................................................................................................................

Subject: NC_003028_SP_1107_SP_1108|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1038201,1038545]|345
HSP  1	e-value: 2.0E-30	bit: 135.0	Len: 104	Query Start:559	Query End:662	Subject Strand: NEGATIVE	Subject Start: 146	Subject End: 249
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaattaaagtgcaaactaggaagttagccgcaggctgtacttgagtacggcaaggtgaaattgacatggtttgaatttgattttcgaagagta

Subject: NC_008533_SPD_0710_SPD_0711|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[727105,727897]|793
HSP  1	e-value: 1.0E-25	bit: 119.0	Len: 104	Query Start:559	Query End:662	Subject Strand: NEGATIVE	Subject Start: 136	Subject End: 238
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactaaatgaaaatcaaaaagcaaactaagaagctagcctcaggctgtacttgagtacggtaaggcgacgctgacgtgatttgaa-gagattttcgaagagta

Subject: NC_003028_SP_0807_SP_0809|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[764244,764778]|535
HSP  1	e-value: 1.0E-25	bit: 119.0	Len: 104	Query Start:559	Query End:662	Subject Strand: NEGATIVE	Subject Start: 136	Subject End: 238
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactaaatgaaaatcaaaaagcaaactaagaagctagcctcaggctgtacttgagtacggtaaggcgacgctgacgtgatttgaa-aagattttcgaagagta

Subject: NC_008533_SPD_1492_SPD_1493|hypothetical protein:sugar ABC transporter, permease protein|NEGATIVE:NEGATIVE|[1508518,1508789]|272
HSP  1	e-value: 1.0E-16	bit: 89.7	Len: 105	Query Start:558	Query End:662	Subject Strand: POSITIVE	Subject Start: 168	Subject End: 272
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatactcaatgaaaattgaagaacaaactaggaagctaaccgcaggcaatacttaagtatggcaaggtgaagctgacgtagtttgcattcgattttcgcagagta

Subject: NC_008533_SPD_0089_SPD_0090|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[89674,89930]|257
HSP  1	e-value: 1.0E-16	bit: 89.7	Len: 53	Query Start:554	Query End:606	Subject Strand: NEGATIVE	Subject Start: 159	Subject End: 211
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg........................................................
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atcttatactcaatgaaaatcaaagagcaaactagaaaactagccgcaggctg........................................................
HSP  2	e-value: 3.0E-11	bit: 71.9	Len: 48	Query Start:615	Query End:662	Subject Strand: NEGATIVE	Subject Start: 55	Subject End: 102
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagta

Subject: NC_003098_spr1524_spr1525|hypothetical protein:ABC transporter membrane-spanning permease - sugar transport|NEGATIVE:NEGATIVE|[1500987,1501258]|272
HSP  1	e-value: 1.0E-16	bit: 89.7	Len: 105	Query Start:558	Query End:662	Subject Strand: POSITIVE	Subject Start: 168	Subject End: 272
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatactcaatgaaaattgaagaacaaactaggaagctaaccgcaggcaatacttaagtatggcaaggtgaagctgacgtagtttgcattcgattttcgcagagta

Subject: NC_008533_SPD_0047_SPD_0049|hypothetical protein:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[39873,41901]|2029
HSP  1	e-value: 5.0E-16	bit: 87.7	Len: 48	Query Start:559	Query End:606	Subject Strand: NEGATIVE	Subject Start: 1963	Subject End: 2010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg........................................................
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg........................................................
HSP  2	e-value: 1.0E-13	bit: 79.8	Len: 48	Query Start:615	Query End:662	Subject Strand: NEGATIVE	Subject Start: 1861	Subject End: 1908
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta

Subject: NC_003028_SP_0091_SP_0092|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[94866,95122]|257
HSP  1	e-value: 3.0E-14	bit: 81.8	Len: 53	Query Start:554	Query End:606	Subject Strand: NEGATIVE	Subject Start: 159	Subject End: 211
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg........................................................
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atcttatactcaataaaaatcaaagagcaaactagaaaactagccgcaggctg........................................................
HSP  2	e-value: 3.0E-11	bit: 71.9	Len: 48	Query Start:615	Query End:662	Subject Strand: NEGATIVE	Subject Start: 55	Subject End: 102
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagta

Subject: NC_003028_SP_0041_SP_0042|bacteriocin BlpU:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[40102,40815]|714
HSP  1	e-value: 1.0E-13	bit: 79.8	Len: 48	Query Start:615	Query End:662	Subject Strand: NEGATIVE	Subject Start: 546	Subject End: 593
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta
HSP  2	e-value: 1.0E-13	bit: 79.8	Len: 48	Query Start:559	Query End:606	Subject Strand: NEGATIVE	Subject Start: 648	Subject End: 695
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg........................................................
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgtaggctg........................................................

Subject: NC_003028_SP_1516_SP_1517|acetyltransferase, GNAT family:transcription elongation factor GreA|NEGATIVE:NEGATIVE|[1424331,1424807]|477
HSP  1	e-value: 2.0E-12	bit: 75.8	Len: 50	Query Start:554	Query End:603	Subject Strand: POSITIVE	Subject Start: 86	Subject End: 135
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcagg...........................................................
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atctaatactcaataaaaatcaaagagcaaactaggaaactagccgcagg...........................................................
HSP  2	e-value: 2.0E-6	bit: 56.0	Len: 48	Query Start:615	Query End:662	Subject Strand: POSITIVE	Subject Start: 374	Subject End: 420
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tacggcaaggcgacgctgacgtggtttgaa-gagattttcgaagagta


Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
AACACCUUCUUUCCUAUAAUCAUAUUAUAAUACUUUAUGUAAGCGAACACAAGAAAUUUGAGGUAAUUUUUAAGUAGAUUUCGAGGCUUAAAGGUUGUAAAACCAGCAUUUUAAGCGUUCAAUGUGUCUAUGAUUUCUCUCUUUUUAAUUCAAGAUUGACUCAAAUCCACAGCAUUCAAAAAAAGCGAAUUUCAAUCGAAAUUCGCUUUAUAGGAAAGUGUAUUAGUAUAAAUCUUGUAUCUUAUACUCAAUGAAAAUCAAAGAGCAAACUAGGAAGCUAGCCGCAGGCUGUACUUGAGUACGGCAAGGCAACGCUGACGUGGUUUGAAUUUGAUUUUCGAAGAGUA
.((((....(((((((((..................((((....((((....((((((((...((.....))..))))))))...((((((((((((......)))).))))))))))))..((((..(.(((..((..((((........))))..)).))).)..)))))))).......(((((((((((....)))))))))))))))))))))))).......................(((((..(((((((((((...((((((((..(((..(((....(((((((....)))))))..)))...)))..).)))))))..)))))))))))..))))) (-95.70)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
UACUCUUCGAAAAUCAAAUUCAAACCACGUCAGCGUUGCCUUGCCGUACUCAAGUACAGCCUGCGGCUAGCUUCCUAGUUUGCUCUUUGAUUUUCAUUGAGUAUAAGAUACAAGAUUUAUACUAAUACACUUUCCUAUAAAGCGAAUUUCGAUUGAAAUUCGCUUUUUUUGAAUGCUGUGGAUUUGAGUCAAUCUUGAAUUAAAAAGAGAGAAAUCAUAGACACAUUGAACGCUUAAAAUGCUGGUUUUACAACCUUUAAGCCUCGAAAUCUACUUAAAAAUUACCUCAAAUUUCUUGUGUUCGCUUACAUAAAGUAUUAUAAUAUGAUUAUAGGAAAGAAGGUGUU
(((((...((((((((((..(((((...(..(((...(((..((.((((....)))).))....)))..)))..)..)))))...))))))))))...)))))....................(((((.(((((((((((.(((((((((....)))))))))........(((((.((((((((..(((..((((........))))((....))...))).........(((((((.....((((....)))))))))))....)))))))).....................((((((......)))))).))))).........)))))))))))...))))) (-87.00)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
1048	310	261	218	169	smit:SMT_1810|5end_hypothetical_protein_1785219..1785449_POSITIVE
1017	310	261	184	135	smit:SMT_1602|5end_hypothetical_protein_1592385..1592615_POSITIVE
1017	310	261	196	147	smit:SMT_1488|5end_K06147_ATP-binding_cassette,_subfamily_B,_bacterial_1467157..1467387_POSITIVE
1017	310	261	209	160	smit:SMT_833|5end_hypothetical_protein_predicted_by_Glimmer/Critica_775362..775592_NEGATIVE
1017	310	261	193	144	smit:SMT_130|5end_capsular_polysaccharide_biosynthesis_protein_80995..81225_POSITIVE
983	309	261	231	183	smit:SMT_1138|5end_hypothetical_protein_1079547..1079777_NEGATIVE
971	310	261	183	134	smit:SMT_1963|5end_ribonuclease_BN,_putative_1896462..1896692_NEGATIVE
971	310	261	170	121	smit:SMT_483|5end_transcriptional_activator_TipA,_putative_418827..419057_POSITIVE
937	309	261	180	132	smit:SMT_1782|5end_hypothetical_protein_1759520..1759750_POSITIVE
887	306	261	231	186	smit:SMT_1179|5end_aldose_1-epimerase_1137854..1138084_NEGATIVE
808	288	244	216	172	smit:SMT_1379|5end_thymidylate_kinase_1357438..1357668_NEGATIVE
807	290	241	151	101	smit:SMT_1200|5end_K06148_ATP-binding_cassette,_subfamily_C,_bacterial_1163235..1163465_NEGATIVE
805	290	244	161	115	smit:SMT_366|5end_hypothetical_protein_302085..302315_POSITIVE
732	289	242	231	184	smit:SMT_443|5end_hydroxyethylthiazole_kinase_382555..382785_POSITIVE
725	340	296	45	1	smit:SMT_2109|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1999099..1999329_NEGATIVE
714	288	244	191	148	smit:SMT_150|5end_K02030_polar_amino_acid_transport_system_substrate-binding_protein_98787..99017_POSITIVE
674	288	241	168	121	smit:SMT_1544|5end_mevalonate_kinase_1528884..1529114_NEGATIVE
673	288	244	156	112	smit:SMT_163|5end_cardiolipin_synthetase_107309..107539_POSITIVE
620	288	242	153	107	smit:SMT_775|5end_alpha-acetolactate_decarboxylase_685972..686202_NEGATIVE
573	278	240	231	193	smit:SMT_2108|5end_adenylosuccinate_lyase_1998851..1999081_NEGATIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
1064	320	271	64	15	smit:SMT_1477|3end_K02077_zinc/manganese_transport_system_substrate-binding_protein_1459447..1459597_NEGATIVE
1048	310	261	53	4	smit:SMT_1809|3end_MutT/NUDIX_family_protein_1785134..1785284_POSITIVE
1017	310	261	54	5	smit:SMT_834|3end_hypothetical_protein_775517..775667_NEGATIVE
1014	309	261	50	2	smit:SMT_799|3end_hypothetical_protein_707296..707446_NEGATIVE
992	310	261	53	4	smit:SMT_2109|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1999061..1999211_NEGATIVE
992	310	261	53	4	smit:SMT_1180|3end_putative_tagatose-6-phosphate_aldose/ketose_isomerase_1138036..1138186_NEGATIVE
986	310	261	53	4	smit:SMT_698|3end_uracil_permease_609769..609919_POSITIVE
964	320	271	59	10	smit:SMT_1964|3end_sodium/hydrogen_exchanger_family_protein_1896596..1896746_NEGATIVE
935	320	271	64	15	smit:SMT_915|3end_sucrose_operon_repressor_868619..868769_POSITIVE
934	309	261	52	4	smit:SMT_890|3end_K02029_polar_amino_acid_transport_system_permease_protein_837692..837842_POSITIVE
906	320	271	59	10	smit:SMT_1536|3end_trigger_factor_1520636..1520786_NEGATIVE
900	330	281	50	1	smit:SMT_1671|3end_hypothetical_protein_1659392..1659542_NEGATIVE
867	330	281	55	6	smit:SMT_1487|3end_hypothetical_protein_1467076..1467226_POSITIVE
841	320	271	56	7	smit:SMT_1766|3end_sucrose-6-phosphate_hydrolase_1743101..1743251_POSITIVE
724	340	294	47	1	smit:SMT_442|3end_transcriptional_regulator,_putative_382400..382550_POSITIVE
714	288	244	109	66	smit:SMT_149|3end_hypothetical_protein_predicted_by_Glimmer/Critica_98785..98935_POSITIVE
617	340	300	83	43	smit:SMT_913|3end_putative_sucrose-specific_PTS_permease,_enzyme_II_863923..864073_NEGATIVE
551	340	298	57	17	smit:SMT_1815|3end_K02035_peptide/nickel_transport_system_substrate-binding_protein_1788899..1789049_NEGATIVE
537	340	301	39	1	smit:SMT_1872|3end_K03217_preprotein_translocase_YidC_subunit_1830883..1831033_NEGATIVE
509	340	300	83	44	smit:SMT_678|3end_K04096_DNA_processing_protein_587447..587597_NEGATIVE