Origin IGS: acttatttcctccttatcattattatatagcaatttagatataaaagcaatgtcatttcataaattggagaattatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagttttatttctactgaatctcccatctacttattcctaaagttgctttcatttgcctcttttgatacacttaaact .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 agtttaagtgtatcaaaagaggcaaatgaaagcaactttaggaataagtagatgggagattcagtagaaataaaactaatactcttcgaaaatcaaattcaaaccacgtcaacgtcgccttgccgtactcaagtacagcctgcggctagtttcctagtttgctctttgattttcattgagtataattctccaatttatgaaatgacattgcttttatatctaaattgctatataataatgataaggaggaaataagt Mask Tandem Repeat Region ================================================ acttatttcctccttatcattattatatagcaatttagatataaaagcaatgtcatttcataaattggagaattatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagttttatttctactgaatctcccatctacttattcctaaagttgctttcatttgcctcttttgatacacttaaact Find is-nt database================================================ Query_seq: SMT_1138:SMT_1139|SMT_1138:SMT_1139:hypothetical protein:rRNA (guanine-N1-)-methyltransferase:<-->:1079638..1079894 257 acttatttcctccttatcattattatatagcaatttagatataaaagcaatgtcatttcataaattggagaattatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagttttatttctactgaatctcccatctacttattcctaaagttgctttcatttgcctcttttgatacacttaaact Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1138:SMT_1139|SMT_1138:SMT_1139:hypothetical protein:rRNA (guanine-N1-)-methyltransferase:<-->:1079638..1079894 257 acttatttcctccttatcattattatatagcaatttagatataaaagcaatgtcatttcataaattggagaattatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagttttatttctactgaatctcccatctacttattcctaaagttgctttcatttgcctcttttgatacacttaaact Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1138:SMT_1139|SMT_1138:SMT_1139:hypothetical protein:rRNA (guanine-N1-)-methyltransferase:<-->:1079638..1079894 257 acttatttcctccttatcattattatatagcaatttagatataaaagcaatgtcatttcataaattggagaattatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagttttatttctactgaatctcccatctacttattcctaaagttgctttcatttgcctcttttgatacacttaaact Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 acttatttcctccttatcattattatatagcaatttagatataaaagcaatgtcatttcataaattggagaattatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagttttatttctactgaatctcccatctacttattcctaaagttgctttcatttgcctcttttgatacacttaaact Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: - Start: 6 End: 206 ..... Y C N L Y L L L T M E Y I P S N Y E I F I L S C V L F S A A P Q V Q T R C P S T S T T Q I Q N E F L I L K I E V S D G M ................................................... acttatttcctccttatcattattatatagcaatttagatataaaagcaatgtcatttcataaattggagaattatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagttttatttctactgaatctcccatctacttattcctaaagttgctttcatttgcctcttttgatacacttaaact Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 86 Start: 22 End: 51 .....................ATTGCTTTTATATCTAAATTGCTATATAAT.............................................................................................................................................................................................................. PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 72 End: 101 .......................................................................GTTTGCTCTTTGATTTTCATTGAGTATAAT............................................................................................................................................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ acttatttcctccttatcattattatatagcaatttagatataaaagcaatgtcatttcataaattggagaattatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagttttatttctactgaatctcccatctacttattcctaaagttgctttcatttgcctcttttgatacacttaaact Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: SMT_1138:SMT_1139|SMT_1138:SMT_1139:hypothetical protein:rRNA (guanine-N1-)-methyltransferase:<-->:1079638..1079894 257 acttatttcctccttatcattattatatagcaatttagatataaaagcaatgtcatttcataaattggagaattatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagttttatttctactgaatctcccatctacttattcctaaagttgctttcatttgcctcttttgatacacttaaact Intra-Species Hit: Count: 39 Min: 1 Max: 257 Len: 257 Subject: smit_SMT_1138_SMT_1139|hypothetical protein:rRNA (guanine-N1-)- methyltransferase|NEGATIVE:POSITIVE|[1079638, 1079894]|257 HSP 1 e-value: 1.0E-143 bit: 509.0 Len: 257 Query Start:1 Query End:257 Subject Strand: POSITIVE Subject Start: 1 Subject End: 257 acttatttcctccttatcattattatatagcaatttagatataaaagcaatgtcatttcataaattggagaattatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagttttatttctactgaatctcccatctacttattcctaaagttgctttcatttgcctcttttgatacacttaaact acttatttcctccttatcattattatatagcaatttagatataaaagcaatgtcatttcataaattggagaattatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagttttatttctactgaatctcccatctacttattcctaaagttgctttcatttgcctcttttgatacacttaaact Subject: smit_SMT_1393_SMT_1394|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:POSITIVE|[1369621,1370215]|595 HSP 1 e-value: 7.0E-56 bit: 218.0 Len: 110 Query Start:72 Query End:181 Subject Strand: NEGATIVE Subject Start: 150 Subject End: 259 .......................................................................attatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ .......................................................................attatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ Subject: smit_SMT_662_SMT_663|A/G-specific adenine glycosylase:phosphate acetyltransferase|NEGATIVE:NEGATIVE|[573918,574105]|188 HSP 1 e-value: 2.0E-53 bit: 210.0 Len: 106 Query Start:73 Query End:178 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 155 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... Subject: smit_SMT_1601_SMT_1602|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|POSITIVE:POSITIVE|[1592204,1592524]|321 HSP 1 e-value: 7.0E-53 bit: 208.0 Len: 105 Query Start:75 Query End:179 Subject Strand: NEGATIVE Subject Start: 191 Subject End: 295 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. Subject: smit_SMT_259_SMT_260|dipeptide/tripeptide permease:phage transcriptional repressor|POSITIVE:POSITIVE|[199242,199609]|368 HSP 1 e-value: 7.0E-53 bit: 208.0 Len: 109 Query Start:73 Query End:181 Subject Strand: NEGATIVE Subject Start: 102 Subject End: 210 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagtatta............................................................................ Subject: smit_SMT_129_SMT_130|putative glycosyltransferase:capsular polysaccharide biosynthesis protein|POSITIVE:POSITIVE|[80944,81134]|191 HSP 1 e-value: 4.0E-51 bit: 202.0 Len: 110 Query Start:72 Query End:181 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 159 .......................................................................attatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ .......................................................................attatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagcatta............................................................................ Subject: smit_SMT_698_SMT_699|uracil permease:K03106 signal recognition particle, subunit SRP54|POSITIVE:NEGATIVE|[609830,610030]|201 HSP 1 e-value: 7.0E-50 bit: 198.0 Len: 104 Query Start:75 Query End:178 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 104 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... ..........................................................................atactcaatgaaaatcaaagaacaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... Subject: smit_SMT_482_SMT_483|hypothetical protein predicted by Glimmer/Critica:transcriptional activator TipA, putative|NEGATIVE:POSITIVE|[418627,418966]|340 HSP 1 e-value: 4.0E-48 bit: 192.0 Len: 109 Query Start:73 Query End:181 Subject Strand: NEGATIVE Subject Start: 222 Subject End: 330 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta............................................................................ Subject: smit_SMT_1963_SMT_1964|ribonuclease BN, putative:sodium/hydrogen exchanger family protein|NEGATIVE:NEGATIVE|[1896553,1896685]|133 HSP 1 e-value: 6.0E-47 bit: 188.0 Len: 109 Query Start:73 Query End:181 Subject Strand: POSITIVE Subject Start: 24 Subject End: 132 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ........................................................................ttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta............................................................................ Subject: smit_SMT_1809_SMT_1810|MutT/NUDIX family protein:hypothetical protein|POSITIVE:POSITIVE|[1785195,1785358]|164 HSP 1 e-value: 3.0E-46 bit: 186.0 Len: 106 Query Start:73 Query End:178 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 106 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta............................................................................... Subject: smit_SMT_1139_SMT_1140|rRNA (guanine-N1-)-methyltransferase:glycogen phosphorylase|POSITIVE:NEGATIVE|[1080744,1081405]|662 HSP 1 e-value: 3.0E-46 bit: 186.0 Len: 106 Query Start:73 Query End:178 Subject Strand: POSITIVE Subject Start: 557 Subject End: 662 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta............................................................................... Subject: smit_SMT_1534_SMT_1535|signal peptidase I:exodeoxyribonuclease V alpha chain|POSITIVE:POSITIVE|[1517973,1518206]|234 HSP 1 e-value: 1.0E-45 bit: 184.0 Len: 109 Query Start:73 Query End:181 Subject Strand: POSITIVE Subject Start: 97 Subject End: 205 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcgaaactgacgtggtttgaatttgattttcgaagagtatta............................................................................ Subject: smit_SMT_1068_SMT_1069|ATP-dependent DNA helicase RecG:acetyl xylan esterase, putative|POSITIVE:POSITIVE|[1009047,1009469]|423 HSP 1 e-value: 1.0E-45 bit: 184.0 Len: 109 Query Start:73 Query End:181 Subject Strand: POSITIVE Subject Start: 19 Subject End: 127 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta............................................................................ Subject: smit_SMT_2133_SMT_2134|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[2014098,2014211]|114 HSP 1 e-value: 4.0E-45 bit: 182.0 Len: 104 Query Start:79 Query End:182 Subject Strand: NEGATIVE Subject Start: 11 Subject End: 114 ..............................................................................tcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattag........................................................................... ..............................................................................tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattag........................................................................... Subject: smit_SMT_1487_SMT_1488|hypothetical protein:K06147 ATP-binding cassette, subfamily B, bacterial|POSITIVE:POSITIVE|[1467137,1467296]|160 HSP 1 e-value: 4.0E-45 bit: 182.0 Len: 104 Query Start:75 Query End:178 Subject Strand: NEGATIVE Subject Start: 19 Subject End: 122 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtactcgagtacggcaaggcgacgttgacgcagtttgaatttgattttcgaagagta............................................................................... Subject: smit_SMT_872_SMT_873|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[820709,820822]|114 HSP 1 e-value: 4.0E-45 bit: 182.0 Len: 104 Query Start:79 Query End:182 Subject Strand: NEGATIVE Subject Start: 11 Subject End: 114 ..............................................................................tcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattag........................................................................... ..............................................................................tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattag........................................................................... Subject: smit_SMT_384_SMT_385|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[319921,320034]|114 HSP 1 e-value: 4.0E-45 bit: 182.0 Len: 104 Query Start:79 Query End:182 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 ..............................................................................tcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattag........................................................................... ..............................................................................tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattag........................................................................... Subject: smit_SMT_833_SMT_834|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|NEGATIVE:NEGATIVE|[775453,775606]|154 HSP 1 e-value: 6.0E-44 bit: 178.0 Len: 106 Query Start:73 Query End:178 Subject Strand: POSITIVE Subject Start: 50 Subject End: 154 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagta............................................................................... Subject: smit_SMT_1670_SMT_1671|K02030 polar amino acid transport system substrate-binding protein:hypothetical protein|POSITIVE:NEGATIVE|[1659356,1659481]|126 HSP 1 e-value: 1.0E-42 bit: 174.0 Len: 104 Query Start:76 Query End:179 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 ...........................................................................tactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ...........................................................................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.............................................................................. Subject: smit_SMT_826_SMT_827|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[750113,750528]|416 HSP 1 e-value: 1.0E-42 bit: 174.0 Len: 108 Query Start:73 Query End:180 Subject Strand: NEGATIVE Subject Start: 104 Subject End: 211 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatt............................................................................. ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggttgtactggagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagtatt............................................................................. Subject: smit_SMT_2108_SMT_2109|adenylosuccinate lyase:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1998942,1999150]|209 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 106 Query Start:73 Query End:178 Subject Strand: POSITIVE Subject Start: 104 Subject End: 209 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta............................................................................... Subject: smit_SMT_1179_SMT_1180|aldose 1-epimerase:putative tagatose-6-phosphate aldose/ketose isomerase|NEGATIVE:NEGATIVE|[1137945,1138125]|181 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 106 Query Start:73 Query End:178 Subject Strand: POSITIVE Subject Start: 76 Subject End: 181 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta............................................................................... Subject: smit_SMT_890_SMT_891|K02029 polar amino acid transport system permease protein:oxidoreductase, putative|POSITIVE:POSITIVE|[837753,837989]|237 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 106 Query Start:73 Query End:178 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 106 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagacgcaggctgtacttgagtacggcaaggtgaagctgacgtggtttgaatttgattttcgaagagta............................................................................... Subject: smit_SMT_1766_SMT_1767|sucrose-6-phosphate hydrolase:oxidoreductase, short chain dehydrogenase/reductase family|POSITIVE:NEGATIVE|[1743162,1743332]|171 HSP 1 e-value: 6.0E-41 bit: 168.0 Len: 109 Query Start:73 Query End:181 Subject Strand: NEGATIVE Subject Start: 5 Subject End: 113 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagtcgcaagctgtacttgagtacggtgaggcgacgctgacgtggtttgaatttgattttcgaagagtatta............................................................................ Subject: smit_SMT_1781_SMT_1782|transcriptional regulator, xre family:hypothetical protein|POSITIVE:POSITIVE|[1759357,1759659]|303 HSP 1 e-value: 4.0E-39 bit: 163.0 Len: 110 Query Start:75 Query End:184 Subject Strand: NEGATIVE Subject Start: 171 Subject End: 280 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagtt......................................................................... ..........................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgaaggctgtacttgagtacggcaaggtgaagctgacgtagtttgaatttgattttcgaagagtataagtt......................................................................... Subject: smit_SMT_442_SMT_443|transcriptional regulator, putative:hydroxyethylthiazole kinase|POSITIVE:POSITIVE|[382461,382694]|234 HSP 1 e-value: 1.0E-38 bit: 161.0 Len: 109 Query Start:73 Query End:181 Subject Strand: NEGATIVE Subject Start: 34 Subject End: 142 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ........................................................................ttatgctcaatgaaaatcaaagagcaaactaggaagctagccgtaggctgtacttgagtacggcaaggtgaagctgacgtggtttgaatttgattttcgaagagaatta............................................................................ Subject: smit_SMT_798_SMT_799|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[707167,707385]|219 HSP 1 e-value: 3.0E-36 bit: 153.0 Len: 109 Query Start:73 Query End:181 Subject Strand: POSITIVE Subject Start: 112 Subject End: 219 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggtgaagctgacgtggtttgaa-gagattttcgaagagtatta............................................................................ Subject: smit_SMT_1476_SMT_1477|thiol peroxidase:K02077 zinc/manganese transport system substrate-binding protein|NEGATIVE:NEGATIVE|[1459310,1459536]|227 HSP 1 e-value: 2.0E-34 bit: 147.0 Len: 106 Query Start:73 Query End:178 Subject Strand: POSITIVE Subject Start: 123 Subject End: 227 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccacaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaa-gagattttcgaagagta............................................................................... Subject: smit_SMT_915_SMT_916|sucrose operon repressor:3-hydroxy-3-methylglutaryl-CoA reductase|POSITIVE:NEGATIVE|[868680,868819]|140 HSP 1 e-value: 5.0E-32 bit: 139.0 Len: 106 Query Start:73 Query End:178 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 105 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... ........................................................................ttatactcaatgaaaatcaaagagcgaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta............................................................................... Subject: smit_SMT_1535_SMT_1536|exodeoxyribonuclease V alpha chain:trigger factor|POSITIVE:NEGATIVE|[1520574,1520725]|152 HSP 1 e-value: 2.0E-31 bit: 137.0 Len: 105 Query Start:75 Query End:179 Subject Strand: POSITIVE Subject Start: 45 Subject End: 148 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ..........................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccacaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat.............................................................................. Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337 HSP 1 e-value: 3.0E-27 bit: 123.0 Len: 110 Query Start:75 Query End:184 Subject Strand: POSITIVE Subject Start: 257 Subject End: 365 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagtt......................................................................... ..........................................................................atactcaatgaaaatcaaagatcaaactaggaagctagccgtagtcagtacttgagtacggcaaggcgaagctgacgtggtttgaa-gagattttcgaagagtatcagtt......................................................................... Subject: smit_SMT_1689_SMT_1690|PTS enzyme, maltose-and glucose-specific, factor II homologue:K06148 ATP-binding cassette, subfamily C, bacterial|POSITIVE:NEGATIVE|[1673200,1673459]|260 HSP 1 e-value: 3.0E-21 bit: 103.0 Len: 104 Query Start:76 Query End:179 Subject Strand: POSITIVE Subject Start: 1 Subject End: 103 ...........................................................................tactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ...........................................................................tactcaatgaaaatcaaagagcaaactgggaagctaggcgcaggctatacttgagtacgccaaggcgaagctggcatggtttgaa-gagattttcgaagagtat.............................................................................. Subject: smit_SMT_1200_SMT_1201|K06148 ATP-binding cassette, subfamily C, bacterial:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1163326,1163854]|529 HSP 1 e-value: 2.0E-19 bit: 97.6 Len: 49 Query Start:131 Query End:179 Subject Strand: POSITIVE Subject Start: 116 Subject End: 164 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. HSP 2 e-value: 2.0E-16 bit: 87.7 Len: 48 Query Start:75 Query End:122 Subject Strand: POSITIVE Subject Start: 14 Subject End: 61 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg....................................................................................................................................... ..........................................................................atactcaatgaaaatcaaagagcaaactagaaaactagccgcaggctg....................................................................................................................................... Subject: smit_SMT_1544_SMT_1545|mevalonate kinase:choline-binding protein|NEGATIVE:NEGATIVE|[1528975,1529249]|275 HSP 1 e-value: 2.0E-16 bit: 87.7 Len: 56 Query Start:131 Query End:186 Subject Strand: POSITIVE Subject Start: 136 Subject End: 191 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagtttt....................................................................... ..................................................................................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattattttt....................................................................... HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 45 Query Start:75 Query End:119 Subject Strand: POSITIVE Subject Start: 33 Subject End: 77 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcagg.......................................................................................................................................... ..........................................................................atactcaatgaaaatcaaaaagcaaactatgaagctacccgcagg.......................................................................................................................................... Subject: smit_SMT_495_SMT_496|bacterial peptide chain release factor 2 (RF-2):superoxide dismutase, manganese-dependent|POSITIVE:POSITIVE|[430114, 430572]|459 HSP 1 e-value: 7.0E-16 bit: 85.7 Len: 43 Query Start:73 Query End:115 Subject Strand: POSITIVE Subject Start: 157 Subject End: 199 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccg.............................................................................................................................................. ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccg.............................................................................................................................................. HSP 2 e-value: 1.0E-8 bit: 61.9 Len: 51 Query Start:131 Query End:181 Subject Strand: POSITIVE Subject Start: 307 Subject End: 356 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ..................................................................................................................................tacggcaaggcgacgttgacgcggtttgaa-gagattttcgaagagtatta............................................................................ Subject: smit_SMT_1569_SMT_1570|dihydroxy-acid dehydratase:hypothetical protein|POSITIVE:NEGATIVE|[1563129,1563339]|211 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 45 Query Start:75 Query End:119 Subject Strand: NEGATIVE Subject Start: 110 Subject End: 154 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcagg.......................................................................................................................................... ..........................................................................atactcaatgaaaatcaaagaacaaactaggaaactagccgcagg.......................................................................................................................................... HSP 2 e-value: 6.0E-10 bit: 65.9 Len: 49 Query Start:131 Query End:179 Subject Strand: NEGATIVE Subject Start: 5 Subject End: 52 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtat.............................................................................. Subject: smit_SMT_217_SMT_218|hypothetical protein:undecaprenyl pyrophosphate synthetase|POSITIVE:POSITIVE|[149949,150294]|346 HSP 1 e-value: 4.0E-14 bit: 79.8 Len: 52 Query Start:68 Query End:119 Subject Strand: POSITIVE Subject Start: 151 Subject End: 202 ...................................................................gagaattatactcaatgaaaatcaaagagcaaactaggaaactagccgcagg.......................................................................................................................................... ...................................................................gagaataatactcaatgaaaatcaaagaccaaactaggaagctagccgcagg.......................................................................................................................................... HSP 2 e-value: 6.0E-10 bit: 65.9 Len: 33 Query Start:147 Query End:179 Subject Strand: POSITIVE Subject Start: 239 Subject End: 271 ..................................................................................................................................................tgacgtggtttgaatttgattttcgaagagtat.............................................................................. ..................................................................................................................................................tgacgtggtttgaatttgattttcgaagagtat.............................................................................. Subject: smit_SMT_1554_SMT_1555|isoleucyl-tRNA synthetase:hypothetical protein|POSITIVE:NEGATIVE|[1539973,1540312]|340 HSP 1 e-value: 3.0E-12 bit: 73.8 Len: 109 Query Start:73 Query End:181 Subject Strand: NEGATIVE Subject Start: 147 Subject End: 254 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ........................................................................ttatactaaatgaaaatcaaaaagcaaactaggaagctagtcgcaagctgtgctgaagtacagtgaggcgacattgacgtagtttgaa-gagattttcgaaaagtatta............................................................................ Subject: smit_SMT_912_SMT_913|fructokinase:putative sucrose-specific PTS permease, enzyme II|NEGATIVE:NEGATIVE|[863711,864012]|302 HSP 1 e-value: 1.0E-11 bit: 71.9 Len: 40 Query Start:76 Query End:115 Subject Strand: POSITIVE Subject Start: 152 Subject End: 191 ...........................................................................tactcaatgaaaatcaaagagcaaactaggaaactagccg.............................................................................................................................................. ...........................................................................tactcaatgaaaatcaaagagcaaactaggaagctagccg.............................................................................................................................................. HSP 2 e-value: 1.0E-11 bit: 71.9 Len: 48 Query Start:131 Query End:178 Subject Strand: POSITIVE Subject Start: 255 Subject End: 302 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... ..................................................................................................................................tacggcaaggcgaagctgacatggtttgaatttgattttcgaagagta............................................................................... Inter-species Hit: Count: 69 Min: 34 Max: 257 Len: 224 Subject: NC_003028_SP_0280_SP_0281|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258312,258528]|217 HSP 1 e-value: 7.0E-53 bit: 208.0 Len: 105 Query Start:75 Query End:179 Subject Strand: POSITIVE Subject Start: 10 Subject End: 114 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. Subject: NC_008533_SPD_0546_SPD_0547|branched-chain amino acid transport system II carrier protein:hypothetical protein|POSITIVE:POSITIVE|[559539,559741]|203 HSP 1 e-value: 1.0E-51 bit: 204.0 Len: 111 Query Start:73 Query End:183 Subject Strand: NEGATIVE Subject Start: 3 Subject End: 113 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagt.......................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacgacaaggcgacgttgacgcggtttgaatttgattttcgaagagtattagt.......................................................................... Subject: NC_003098_spr0551_spr0552|Branched-chain amino acid transport system carrier protein:hypothetical protein|POSITIVE:POSITIVE|[552009,552211]|203 HSP 1 e-value: 1.0E-51 bit: 204.0 Len: 111 Query Start:73 Query End:183 Subject Strand: NEGATIVE Subject Start: 3 Subject End: 113 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagt.......................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacgacaaggcgacgttgacgcggtttgaatttgattttcgaagagtattagt.......................................................................... Subject: NC_008533_SPD_1551_SPD_1552|prevent-host-death family protein:hypothetical protein|NEGATIVE:NEGATIVE|[1574500,1574730]|231 HSP 1 e-value: 2.0E-50 bit: 200.0 Len: 109 Query Start:73 Query End:181 Subject Strand: POSITIVE Subject Start: 85 Subject End: 193 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcgatttgaatttgattttcgaagagtatta............................................................................ Subject: NC_003098_spr1586_spr1587|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1567002,1567199]|198 HSP 1 e-value: 2.0E-50 bit: 200.0 Len: 109 Query Start:73 Query End:181 Subject Strand: POSITIVE Subject Start: 52 Subject End: 160 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcgatttgaatttgattttcgaagagtatta............................................................................ Subject: NC_003028_SP_1741_SP_1742|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1645558,1645794]|237 HSP 1 e-value: 2.0E-50 bit: 200.0 Len: 109 Query Start:73 Query End:181 Subject Strand: POSITIVE Subject Start: 91 Subject End: 199 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcgatttgaatttgattttcgaagagtatta............................................................................ Subject: NC_003028_SP_1180_SP_1181|ribonucleotide-diphosphate reductase beta subunit:hypothetical protein|POSITIVE:NEGATIVE|[1119540,1119753]|214 HSP 1 e-value: 2.0E-50 bit: 200.0 Len: 113 Query Start:66 Query End:178 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 113 .................................................................tggagaattatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... .................................................................tggagaattatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta............................................................................... Subject: NC_003028_SP_1787_SP_1788|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1704379,1704737]|359 HSP 1 e-value: 4.0E-45 bit: 182.0 Len: 100 Query Start:86 Query End:185 Subject Strand: NEGATIVE Subject Start: 260 Subject End: 359 .....................................................................................aaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagttt........................................................................ .....................................................................................aaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggtaaggcgacgttgacgtggtttgaatttgattttcgaagagtatcagttt........................................................................ Subject: NC_008533_SPD_0260_SPD_0261|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258814,259029]|216 HSP 1 e-value: 2.0E-43 bit: 176.0 Len: 105 Query Start:75 Query End:179 Subject Strand: POSITIVE Subject Start: 10 Subject End: 113 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtat.............................................................................. Subject: NC_003028_SP_2183_SP_2184|hypothetical protein:glycerol uptake facilitator protein|NEGATIVE:NEGATIVE|[2101749,2102044]|296 HSP 1 e-value: 2.0E-43 bit: 176.0 Len: 105 Query Start:75 Query End:179 Subject Strand: POSITIVE Subject Start: 189 Subject End: 293 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ..........................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.............................................................................. Subject: NC_003028_SP_1472_SP_1473|oxidoreductase, putative:hypothetical protein|POSITIVE:NEGATIVE|[1386055,1386276]|222 HSP 1 e-value: 1.0E-42 bit: 174.0 Len: 108 Query Start:74 Query End:181 Subject Strand: POSITIVE Subject Start: 115 Subject End: 222 .........................................................................tatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ .........................................................................tatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttaagtacggcaaggtgaagctgacgtggtttgaatttgattttcgaagagtatta............................................................................ Subject: NC_003028_SP_0816_SP_0817|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[768501,768664]|164 HSP 1 e-value: 1.0E-41 bit: 170.0 Len: 106 Query Start:73 Query End:178 Subject Strand: POSITIVE Subject Start: 59 Subject End: 164 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctatacttgagtacggtaaggcgacgctgacgtggtttgaattttattttcgaagagta............................................................................... Subject: NC_003028_SP_0096_SP_0097|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[98992,99168]|177 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 104 Query Start:76 Query End:179 Subject Strand: POSITIVE Subject Start: 69 Subject End: 172 ...........................................................................tactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ...........................................................................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgaagctgacgtggtttgaatttgatttttgaagagtat.............................................................................. Subject: NC_008533_SPD_1928_SPD_1929|hypothetical protein:rRNA (guanine-N1-)- methyltransferase|NEGATIVE:POSITIVE|[1899886, 1900003]|118 HSP 1 e-value: 6.0E-38 bit: 159.0 Len: 80 Query Start:178 Query End:257 Subject Strand: POSITIVE Subject Start: 39 Subject End: 118 .................................................................................................................................................................................attagttttatttctactgaatctcccatctacttattcctaaagttgctttcatttgcctcttttgatacacttaaact .................................................................................................................................................................................attagttttatttctactgaatctcccatctacttattcctaaagttgctttcatttgcctcttttgatacacttaaact HSP 2 e-value: 4.0E-8 bit: 60.0 Len: 42 Query Start:34 Query End:75 Subject Strand: POSITIVE Subject Start: 1 Subject End: 42 .................................tttagatataaaagcaatgtcatttcataaattggagaatta...................................................................................................................................................................................... .................................tttagatataaaagcaatttcattctataaattggagaatta...................................................................................................................................................................................... Subject: NC_003098_spr1912_spr1913|hypothetical protein:23S rRNA m1G745 methyltransferase|NEGATIVE:POSITIVE|[1892354, 1892471]|118 HSP 1 e-value: 6.0E-38 bit: 159.0 Len: 80 Query Start:178 Query End:257 Subject Strand: POSITIVE Subject Start: 39 Subject End: 118 .................................................................................................................................................................................attagttttatttctactgaatctcccatctacttattcctaaagttgctttcatttgcctcttttgatacacttaaact .................................................................................................................................................................................attagttttatttctactgaatctcccatctacttattcctaaagttgctttcatttgcctcttttgatacacttaaact HSP 2 e-value: 4.0E-8 bit: 60.0 Len: 42 Query Start:34 Query End:75 Subject Strand: POSITIVE Subject Start: 1 Subject End: 42 .................................tttagatataaaagcaatgtcatttcataaattggagaatta...................................................................................................................................................................................... .................................tttagatataaaagcaatttcattctataaattggagaatta...................................................................................................................................................................................... Subject: NC_003028_SP_2102_SP_2103|hypothetical protein:rRNA (guanine-N1-)- methyltransferase|NEGATIVE:POSITIVE|[2013019, 2013136]|118 HSP 1 e-value: 6.0E-38 bit: 159.0 Len: 80 Query Start:178 Query End:257 Subject Strand: POSITIVE Subject Start: 39 Subject End: 118 .................................................................................................................................................................................attagttttatttctactgaatctcccatctacttattcctaaagttgctttcatttgcctcttttgatacacttaaact .................................................................................................................................................................................attagttttatttctactgaatctcccatctacttattcctaaagttgctttcatttgcctcttttgatacacttaaact HSP 2 e-value: 4.0E-8 bit: 60.0 Len: 42 Query Start:34 Query End:75 Subject Strand: POSITIVE Subject Start: 1 Subject End: 42 .................................tttagatataaaagcaatgtcatttcataaattggagaatta...................................................................................................................................................................................... .................................tttagatataaaagcaatttcattctataaattggagaatta...................................................................................................................................................................................... Subject: NC_008533_SPD_0714_SPD_0715|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[729726,729889]|164 HSP 1 e-value: 9.0E-37 bit: 155.0 Len: 106 Query Start:73 Query End:178 Subject Strand: POSITIVE Subject Start: 59 Subject End: 164 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctatacttgagtacggtaaggcgacgcttacgtgatttgaattttattttcgaagagta............................................................................... Subject: NC_003098_spr0720_spr0721|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[722195,722358]|164 HSP 1 e-value: 9.0E-37 bit: 155.0 Len: 106 Query Start:73 Query End:178 Subject Strand: POSITIVE Subject Start: 59 Subject End: 164 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctatacttgagtacggtaaggcgacgcttacgtgatttgaattttattttcgaagagta............................................................................... Subject: NC_008533_SPD_0991_SPD_0992|ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1002301,1002645]|345 HSP 1 e-value: 3.0E-36 bit: 153.0 Len: 105 Query Start:75 Query End:179 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 249 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ..........................................................................atactcaatgaaaattaaagtgcaaactaggaagttagccgcaggctgtacttgagtacggcaaggtgaaattgacgtggtttgaatttgattttcgaagagtat.............................................................................. Subject: NC_003098_spr1014_spr1015|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[994770,995114]|345 HSP 1 e-value: 3.0E-36 bit: 153.0 Len: 105 Query Start:75 Query End:179 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 249 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ..........................................................................atactcaatgaaaattaaagtgcaaactaggaagttagccgcaggctgtacttgagtacggcaaggtgaaattgacgtggtttgaatttgattttcgaagagtat.............................................................................. Subject: NC_003028_SP_1107_SP_1108|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1038201,1038545]|345 HSP 1 e-value: 9.0E-34 bit: 145.0 Len: 105 Query Start:75 Query End:179 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 249 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ..........................................................................atactcaatgaaaattaaagtgcaaactaggaagttagccgcaggctgtacttgagtacggcaaggtgaaattgacatggtttgaatttgattttcgaagagtat.............................................................................. Subject: NC_003028_SP_0292_SP_0293|bifunctional folate synthesis protein:hypothetical protein|POSITIVE:NEGATIVE|[271230,271378]|149 HSP 1 e-value: 3.0E-33 bit: 143.0 Len: 104 Query Start:76 Query End:179 Subject Strand: NEGATIVE Subject Start: 47 Subject End: 149 ...........................................................................tactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ...........................................................................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat.............................................................................. Subject: NC_008533_SPD_1158_SPD_1159|NADP-specific glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1188350,1188844]|495 HSP 1 e-value: 5.0E-29 bit: 129.0 Len: 109 Query Start:73 Query End:181 Subject Strand: POSITIVE Subject Start: 208 Subject End: 315 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaagcgagtcgcaggctgtacttgagtacggcaaggcaaagctgacgtggtttgaa-gagattttcaaagagtatta............................................................................ Subject: NC_003098_spr1181_spr1182|glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1180819,1181313]|495 HSP 1 e-value: 5.0E-29 bit: 129.0 Len: 109 Query Start:73 Query End:181 Subject Strand: POSITIVE Subject Start: 208 Subject End: 315 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaagcgagtcgcaggctgtacttgagtacggcaaggcaaagctgacgtggtttgaa-gagattttcaaagagtatta............................................................................ Subject: NC_003028_SP_1306_SP_1307|glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1233949,1234453]|505 HSP 1 e-value: 1.0E-26 bit: 121.0 Len: 109 Query Start:73 Query End:181 Subject Strand: POSITIVE Subject Start: 218 Subject End: 325 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaagcgagccgcaggctgtacttgagtacggtaaagcaaagctgacgtggtttgaa-gagattttcaaagagtatta............................................................................ Subject: NC_008533_SPD_0710_SPD_0711|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[727105,727897]|793 HSP 1 e-value: 3.0E-24 bit: 113.0 Len: 105 Query Start:75 Query End:179 Subject Strand: NEGATIVE Subject Start: 135 Subject End: 238 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ..........................................................................atactaaatgaaaatcaaaaagcaaactaagaagctagcctcaggctgtacttgagtacggtaaggcgacgctgacgtgatttgaa-gagattttcgaagagtat.............................................................................. Subject: NC_003028_SP_0807_SP_0809|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[764244,764778]|535 HSP 1 e-value: 3.0E-24 bit: 113.0 Len: 105 Query Start:75 Query End:179 Subject Strand: NEGATIVE Subject Start: 135 Subject End: 238 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ..........................................................................atactaaatgaaaatcaaaaagcaaactaagaagctagcctcaggctgtacttgagtacggtaaggcgacgctgacgtgatttgaa-aagattttcgaagagtat.............................................................................. Subject: NC_003028_SP_0041_SP_0042|bacteriocin BlpU:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[40102,40815]|714 HSP 1 e-value: 1.0E-20 bit: 101.0 Len: 51 Query Start:131 Query End:181 Subject Strand: NEGATIVE Subject Start: 543 Subject End: 593 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ HSP 2 e-value: 2.0E-16 bit: 87.7 Len: 48 Query Start:75 Query End:122 Subject Strand: NEGATIVE Subject Start: 648 Subject End: 695 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg....................................................................................................................................... ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgtaggctg....................................................................................................................................... Subject: NC_008533_SPD_0047_SPD_0049|hypothetical protein:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[39873,41901]|2029 HSP 1 e-value: 2.0E-19 bit: 97.6 Len: 49 Query Start:131 Query End:179 Subject Strand: NEGATIVE Subject Start: 1860 Subject End: 1908 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. HSP 2 e-value: 7.0E-19 bit: 95.6 Len: 48 Query Start:75 Query End:122 Subject Strand: NEGATIVE Subject Start: 1963 Subject End: 2010 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg....................................................................................................................................... ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg....................................................................................................................................... Subject: NC_003098_spr1638_spr1639|hypothetical protein:Catabolite control protein|NEGATIVE:NEGATIVE|[1611092,1611987]|896 HSP 1 e-value: 7.0E-19 bit: 95.6 Len: 48 Query Start:75 Query End:122 Subject Strand: NEGATIVE Subject Start: 249 Subject End: 296 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg....................................................................................................................................... ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg....................................................................................................................................... HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 49 Query Start:131 Query End:179 Subject Strand: NEGATIVE Subject Start: 101 Subject End: 148 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ..................................................................................................................................tacggcaaggcgacgttgacgcggtttgaa-gagattttcgaagagtat.............................................................................. Subject: NC_003028_SP_1840_SP_1841|ABC transporter, ATP-binding/permease protein:hypothetical protein|NEGATIVE:NEGATIVE|[1751943,1752147]|205 HSP 1 e-value: 7.0E-19 bit: 95.6 Len: 48 Query Start:75 Query End:122 Subject Strand: POSITIVE Subject Start: 39 Subject End: 86 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg....................................................................................................................................... ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg....................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 56.0 Len: 48 Query Start:131 Query End:178 Subject Strand: POSITIVE Subject Start: 141 Subject End: 187 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... ..................................................................................................................................tacggcaaggcgacgttgacgcggtttgaa-gagattttcgaagagta............................................................................... Subject: NC_008533_SPD_0089_SPD_0090|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[89674,89930]|257 HSP 1 e-value: 3.0E-18 bit: 93.7 Len: 51 Query Start:131 Query End:181 Subject Strand: NEGATIVE Subject Start: 52 Subject End: 102 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ..................................................................................................................................tacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagtatta............................................................................ HSP 2 e-value: 1.0E-17 bit: 91.7 Len: 50 Query Start:73 Query End:122 Subject Strand: NEGATIVE Subject Start: 159 Subject End: 208 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg....................................................................................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaaactagaaaactagccgcaggctg....................................................................................................................................... Subject: NC_003028_SP_0091_SP_0092|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[94866,95122]|257 HSP 1 e-value: 3.0E-18 bit: 93.7 Len: 51 Query Start:131 Query End:181 Subject Strand: NEGATIVE Subject Start: 52 Subject End: 102 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ..................................................................................................................................tacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagtatta............................................................................ HSP 2 e-value: 3.0E-15 bit: 83.8 Len: 50 Query Start:73 Query End:122 Subject Strand: NEGATIVE Subject Start: 159 Subject End: 208 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg....................................................................................................................................... ........................................................................ttatactcaataaaaatcaaagagcaaactagaaaactagccgcaggctg....................................................................................................................................... Subject: NC_008533_SPD_1193_SPD_1194|peptide methionine sulfoxide reductase msrA/msrB 1:homoserine kinase|NEGATIVE:NEGATIVE|[1222081,1222375]|295 HSP 1 e-value: 1.0E-17 bit: 91.7 Len: 50 Query Start:73 Query End:122 Subject Strand: NEGATIVE Subject Start: 180 Subject End: 229 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg....................................................................................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg....................................................................................................................................... HSP 2 e-value: 9.0E-6 bit: 52.0 Len: 54 Query Start:131 Query End:184 Subject Strand: NEGATIVE Subject Start: 27 Subject End: 79 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagtt......................................................................... ..................................................................................................................................tacggtaaggtgacgctgacgtggtttgaaga-gattttcgaagagtattagtt......................................................................... Subject: NC_003098_spr1217_spr1218|bifunctional methionine sulfoxide reductase A/B protein:homoserine kinase|NEGATIVE:NEGATIVE|[1214550,1214844]|295 HSP 1 e-value: 1.0E-17 bit: 91.7 Len: 50 Query Start:73 Query End:122 Subject Strand: NEGATIVE Subject Start: 180 Subject End: 229 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg....................................................................................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg....................................................................................................................................... HSP 2 e-value: 9.0E-6 bit: 52.0 Len: 54 Query Start:131 Query End:184 Subject Strand: NEGATIVE Subject Start: 27 Subject End: 79 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagtt......................................................................... ..................................................................................................................................tacggtaaggtgacgctgacgtggtttgaaga-gattttcgaagagtattagtt......................................................................... Subject: NC_003028_SP_1359_SP_1360|bifunctional methionine sulfoxide reductase A/B protein:homoserine kinase|NEGATIVE:NEGATIVE|[1281932,1282225]|294 HSP 1 e-value: 1.0E-17 bit: 91.7 Len: 50 Query Start:73 Query End:122 Subject Strand: NEGATIVE Subject Start: 179 Subject End: 228 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg....................................................................................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg....................................................................................................................................... HSP 2 e-value: 9.0E-6 bit: 52.0 Len: 54 Query Start:131 Query End:184 Subject Strand: NEGATIVE Subject Start: 27 Subject End: 79 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagtt......................................................................... ..................................................................................................................................tacggtaaggtgacgctgacgtggtttgaaga-gattttcgaagagtattagtt......................................................................... Subject: NC_008533_SPD_0729_SPD_0730|hemolysin-related protein:purine nucleoside phosphorylase|POSITIVE:POSITIVE|[743379,744035]|657 HSP 1 e-value: 4.0E-17 bit: 89.7 Len: 45 Query Start:75 Query End:119 Subject Strand: POSITIVE Subject Start: 99 Subject End: 143 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcagg.......................................................................................................................................... ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcagg.......................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 56.0 Len: 44 Query Start:136 Query End:179 Subject Strand: POSITIVE Subject Start: 206 Subject End: 248 .......................................................................................................................................caaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. .......................................................................................................................................caaggcgacgttgacgtggtttgaa-gagattttcgaagagtat.............................................................................. Subject: NC_003098_spr0737_spr0738|Conserved hypothetical protein, truncation:Purine nucleoside phosphorylase (inosine phosphorylase)|POSITIVE:POSITIVE|[735848,736504]|657 HSP 1 e-value: 4.0E-17 bit: 89.7 Len: 45 Query Start:75 Query End:119 Subject Strand: POSITIVE Subject Start: 99 Subject End: 143 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcagg.......................................................................................................................................... ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcagg.......................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 56.0 Len: 44 Query Start:136 Query End:179 Subject Strand: POSITIVE Subject Start: 206 Subject End: 248 .......................................................................................................................................caaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. .......................................................................................................................................caaggcgacgttgacgtggtttgaa-gagattttcgaagagtat.............................................................................. Subject: NC_008533_SPD_0556_SPD_0558|hypothetical protein:cell wall-associated serine protease PrtA|POSITIVE:POSITIVE|[568719,569947]|1229 HSP 1 e-value: 2.0E-16 bit: 87.7 Len: 44 Query Start:76 Query End:119 Subject Strand: NEGATIVE Subject Start: 961 Subject End: 1004 ...........................................................................tactcaatgaaaatcaaagagcaaactaggaaactagccgcagg.......................................................................................................................................... ...........................................................................tactcaatgaaaatcaaagagcaaactaggaaactagccgcagg.......................................................................................................................................... HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:132 Query End:179 Subject Strand: NEGATIVE Subject Start: 810 Subject End: 856 ...................................................................................................................................acggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ...................................................................................................................................acggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtat.............................................................................. Subject: NC_003098_spr1924_spr1925|aspartyl-tRNA synthetase:hypothetical protein|NEGATIVE:NEGATIVE|[1908629,1908979]|351 HSP 1 e-value: 2.0E-16 bit: 87.7 Len: 48 Query Start:72 Query End:119 Subject Strand: NEGATIVE Subject Start: 273 Subject End: 320 .......................................................................attatactcaatgaaaatcaaagagcaaactaggaaactagccgcagg.......................................................................................................................................... .......................................................................attatactcaatgaaaatcaaagagcaaactaggaagctagccgcagg.......................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 56.0 Len: 52 Query Start:131 Query End:182 Subject Strand: NEGATIVE Subject Start: 119 Subject End: 169 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattag........................................................................... ..................................................................................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtattag........................................................................... Subject: NC_003098_spr0560_spr0561|hypothetical protein:Cell wall-associated serine proteinase precursor PrtA|POSITIVE:POSITIVE|[561687,562417]|731 HSP 1 e-value: 2.0E-16 bit: 87.7 Len: 44 Query Start:76 Query End:119 Subject Strand: NEGATIVE Subject Start: 463 Subject End: 506 ...........................................................................tactcaatgaaaatcaaagagcaaactaggaaactagccgcagg.......................................................................................................................................... ...........................................................................tactcaatgaaaatcaaagagcaaactaggaaactagccgcagg.......................................................................................................................................... HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:132 Query End:179 Subject Strand: NEGATIVE Subject Start: 312 Subject End: 358 ...................................................................................................................................acggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ...................................................................................................................................acggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtat.............................................................................. Subject: NC_003028_SP_2114_SP_2115|aspartyl-tRNA synthetase:hypothetical protein|NEGATIVE:NEGATIVE|[2029292,2029642]|351 HSP 1 e-value: 2.0E-16 bit: 87.7 Len: 48 Query Start:72 Query End:119 Subject Strand: NEGATIVE Subject Start: 273 Subject End: 320 .......................................................................attatactcaatgaaaatcaaagagcaaactaggaaactagccgcagg.......................................................................................................................................... .......................................................................attatactcaatgaaaatcaaagagcaaactaggaagctagccgcagg.......................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 56.0 Len: 52 Query Start:131 Query End:182 Subject Strand: NEGATIVE Subject Start: 119 Subject End: 169 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattag........................................................................... ..................................................................................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtattag........................................................................... Subject: NC_003028_SP_1706_SP_1707|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1611668,1611851]|184 HSP 1 e-value: 7.0E-16 bit: 85.7 Len: 43 Query Start:75 Query End:117 Subject Strand: POSITIVE Subject Start: 32 Subject End: 74 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgca............................................................................................................................................ ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgca............................................................................................................................................ HSP 2 e-value: 6.0E-7 bit: 56.0 Len: 44 Query Start:136 Query End:179 Subject Strand: POSITIVE Subject Start: 139 Subject End: 181 .......................................................................................................................................caaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. .......................................................................................................................................caaggcgacgttgacgtggtttgaa-gagattttcgaagagtat.............................................................................. Subject: NC_003028_SP_0640_SP_0641|hypothetical protein:serine protease, subtilase family|POSITIVE:POSITIVE|[603164,603894]|731 HSP 1 e-value: 7.0E-16 bit: 85.7 Len: 43 Query Start:76 Query End:118 Subject Strand: NEGATIVE Subject Start: 464 Subject End: 506 ...........................................................................tactcaatgaaaatcaaagagcaaactaggaaactagccgcag........................................................................................................................................... ...........................................................................tactcaatgaaaatcaaagagcaaactaggaaactagccgcag........................................................................................................................................... HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:132 Query End:179 Subject Strand: NEGATIVE Subject Start: 312 Subject End: 358 ...................................................................................................................................acggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ...................................................................................................................................acggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtat.............................................................................. Subject: NC_003028_SP_0631_SP_0633|50S ribosomal protein L1:hypothetical protein|POSITIVE:POSITIVE|[598117,598657]|541 HSP 1 e-value: 7.0E-16 bit: 85.7 Len: 47 Query Start:73 Query End:119 Subject Strand: NEGATIVE Subject Start: 491 Subject End: 537 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcagg.......................................................................................................................................... ........................................................................ttatactcaatgaaaaccaaagagcaaactaggaaactagccgcagg.......................................................................................................................................... HSP 2 e-value: 4.0E-11 bit: 69.9 Len: 51 Query Start:132 Query End:182 Subject Strand: NEGATIVE Subject Start: 337 Subject End: 386 ...................................................................................................................................acggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattag........................................................................... ...................................................................................................................................acggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtattag........................................................................... Subject: NC_008533_SPD_1432_SPD_1433|UDP-glucose 4-epimerase:FAD dependent oxidoreductase|NEGATIVE:NEGATIVE|[1449278,1449577]|300 HSP 1 e-value: 3.0E-15 bit: 83.8 Len: 46 Query Start:134 Query End:179 Subject Strand: NEGATIVE Subject Start: 105 Subject End: 150 .....................................................................................................................................ggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. .....................................................................................................................................ggcaaggcgacgttgacgtggtttgaattggattttcgaagagtat.............................................................................. HSP 2 e-value: 6.0E-10 bit: 65.9 Len: 41 Query Start:76 Query End:116 Subject Strand: NEGATIVE Subject Start: 260 Subject End: 300 ...........................................................................tactcaatgaaaatcaaagagcaaactaggaaactagccgc............................................................................................................................................. ...........................................................................tactcaatgaaaatcaaagaacaaactaggtaactagccgc............................................................................................................................................. Subject: NC_003098_spr1460_spr1461|UDP-glucose 4-epimerase:hypothetical protein|NEGATIVE:NEGATIVE|[1441747,1442046]|300 HSP 1 e-value: 3.0E-15 bit: 83.8 Len: 46 Query Start:134 Query End:179 Subject Strand: NEGATIVE Subject Start: 105 Subject End: 150 .....................................................................................................................................ggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. .....................................................................................................................................ggcaaggcgacgttgacgtggtttgaattggattttcgaagagtat.............................................................................. HSP 2 e-value: 6.0E-10 bit: 65.9 Len: 41 Query Start:76 Query End:116 Subject Strand: NEGATIVE Subject Start: 260 Subject End: 300 ...........................................................................tactcaatgaaaatcaaagagcaaactaggaaactagccgc............................................................................................................................................. ...........................................................................tactcaatgaaaatcaaagaacaaactaggtaactagccgc............................................................................................................................................. Subject: NC_003028_SP_0493_SP_0494|DNA-directed RNA polymerase subunit delta:CTP synthetase|POSITIVE:POSITIVE|[470342,470730]|389 HSP 1 e-value: 3.0E-15 bit: 83.8 Len: 50 Query Start:73 Query End:122 Subject Strand: POSITIVE Subject Start: 127 Subject End: 176 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg....................................................................................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaagctaggaaactagccgtaggctg....................................................................................................................................... HSP 2 e-value: 2.0E-10 bit: 67.9 Len: 54 Query Start:131 Query End:184 Subject Strand: POSITIVE Subject Start: 233 Subject End: 285 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagtt......................................................................... ..................................................................................................................................tacggcaaggcgacgttgacgcggtttgaa-gagattttcgaagagtattagtt......................................................................... Subject: NC_003028_SP_0033_SP_0034|hypothetical protein:membrane protein|POSITIVE:NEGATIVE|[34691,35008]|318 HSP 1 e-value: 3.0E-15 bit: 83.8 Len: 42 Query Start:73 Query End:114 Subject Strand: POSITIVE Subject Start: 32 Subject End: 73 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagcc............................................................................................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagcc............................................................................................................................................... HSP 2 e-value: 2.0E-9 bit: 63.9 Len: 48 Query Start:131 Query End:178 Subject Strand: POSITIVE Subject Start: 272 Subject End: 318 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagta............................................................................... Subject: NC_008533_SPD_1492_SPD_1493|hypothetical protein:sugar ABC transporter, permease protein|NEGATIVE:NEGATIVE|[1508518,1508789]|272 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 105 Query Start:74 Query End:178 Subject Strand: POSITIVE Subject Start: 168 Subject End: 272 .........................................................................tatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... .........................................................................tatactcaatgaaaattgaagaacaaactaggaagctaaccgcaggcaatacttaagtatggcaaggtgaagctgacgtagtttgcattcgattttcgcagagta............................................................................... Subject: NC_003098_spr1524_spr1525|hypothetical protein:ABC transporter membrane-spanning permease - sugar transport|NEGATIVE:NEGATIVE|[1500987,1501258]|272 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 105 Query Start:74 Query End:178 Subject Strand: POSITIVE Subject Start: 168 Subject End: 272 .........................................................................tatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... .........................................................................tatactcaatgaaaattgaagaacaaactaggaagctaaccgcaggcaatacttaagtatggcaaggtgaagctgacgtagtttgcattcgattttcgcagagta............................................................................... Subject: NC_003028_SP_1516_SP_1517|acetyltransferase, GNAT family:transcription elongation factor GreA|NEGATIVE:NEGATIVE|[1424331,1424807]|477 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 45 Query Start:75 Query End:119 Subject Strand: POSITIVE Subject Start: 91 Subject End: 135 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcagg.......................................................................................................................................... ..........................................................................atactcaataaaaatcaaagagcaaactaggaaactagccgcagg.......................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 56.0 Len: 48 Query Start:131 Query End:178 Subject Strand: POSITIVE Subject Start: 374 Subject End: 420 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta............................................................................... ..................................................................................................................................tacggcaaggcgacgctgacgtggtttgaa-gagattttcgaagagta............................................................................... Subject: NC_003028_SP_0834_SP_0835|hemolysin-related protein:purine nucleoside phosphorylase, family 1|POSITIVE:POSITIVE|[783000,783652]|653 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 45 Query Start:75 Query End:119 Subject Strand: POSITIVE Subject Start: 99 Subject End: 143 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcagg.......................................................................................................................................... ..........................................................................atactcaatgaaaatcaaagagcaaactaagaaactagccgcagg.......................................................................................................................................... HSP 2 e-value: 6.0E-7 bit: 56.0 Len: 44 Query Start:136 Query End:179 Subject Strand: POSITIVE Subject Start: 206 Subject End: 248 .......................................................................................................................................caaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. .......................................................................................................................................caaggcgacgttgacgtggtttgaa-gagattttcgaagagtat.............................................................................. Subject: NC_008533_SPD_0099_SPD_0101|capsular polysaccharide biosynthesis protein:hydrolase, haloacid dehalogenase-like family protein|POSITIVE:NEGATIVE|[101068,101462]|395 HSP 1 e-value: 4.0E-14 bit: 79.8 Len: 48 Query Start:75 Query End:122 Subject Strand: NEGATIVE Subject Start: 306 Subject End: 353 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg....................................................................................................................................... ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagctgcgggctg....................................................................................................................................... HSP 2 e-value: 6.0E-10 bit: 65.9 Len: 49 Query Start:131 Query End:179 Subject Strand: NEGATIVE Subject Start: 67 Subject End: 114 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtat.............................................................................. Subject: NC_003098_spr0092_spr0093|CapD protein, required for the biosynthesis of type 1 capsular polysaccharide:Phosphoglycolate phosphatase|POSITIVE:NEGATIVE|[101068,101462]|395 HSP 1 e-value: 4.0E-14 bit: 79.8 Len: 48 Query Start:75 Query End:122 Subject Strand: NEGATIVE Subject Start: 306 Subject End: 353 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg....................................................................................................................................... ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagctgcgggctg....................................................................................................................................... HSP 2 e-value: 6.0E-10 bit: 65.9 Len: 49 Query Start:131 Query End:179 Subject Strand: NEGATIVE Subject Start: 67 Subject End: 114 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtat.............................................................................. Subject: NC_003098_spr0556_spr0557|50S ribosomal protein L1:ABC transporter ATP-binding protein - role in polysaccharide efflux|POSITIVE:POSITIVE|[556072,558588]|2517 HSP 1 e-value: 2.0E-13 bit: 77.8 Len: 47 Query Start:73 Query End:119 Subject Strand: NEGATIVE Subject Start: 1061 Subject End: 1107 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcagg.......................................................................................................................................... ........................................................................ttatactcaatgaaaaccaaagagcaaactaggaaactagcctcagg.......................................................................................................................................... HSP 2 e-value: 1.0E-8 bit: 61.9 Len: 51 Query Start:132 Query End:182 Subject Strand: NEGATIVE Subject Start: 592 Subject End: 641 ...................................................................................................................................acggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattag........................................................................... ...................................................................................................................................acggcaaggcgacgttgacgtggtttgaa-gagattttcaaagagtattag........................................................................... Subject: NC_003028_SP_1717_SP_1718|ABC transporter, ATP-binding protein:hypothetical protein|NEGATIVE:NEGATIVE|[1621815,1622204]|390 HSP 1 e-value: 2.0E-13 bit: 77.8 Len: 43 Query Start:73 Query End:115 Subject Strand: POSITIVE Subject Start: 114 Subject End: 156 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccg.............................................................................................................................................. ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctagccg.............................................................................................................................................. HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 53 Query Start:131 Query End:183 Subject Strand: POSITIVE Subject Start: 264 Subject End: 315 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagt.......................................................................... ..................................................................................................................................tacggcaaggcgaagctgacgtggtttgaa-gagattttcgaagagtattagt.......................................................................... Subject: NC_003028_SP_1696_SP_1697|hypothetical protein:ATP-dependent DNA helicase RecG|NEGATIVE:NEGATIVE|[1600719,1600952]|234 HSP 1 e-value: 2.0E-13 bit: 77.8 Len: 47 Query Start:73 Query End:119 Subject Strand: NEGATIVE Subject Start: 170 Subject End: 216 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcagg.......................................................................................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaagctaaccgcagg.......................................................................................................................................... HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 51 Query Start:131 Query End:181 Subject Strand: NEGATIVE Subject Start: 16 Subject End: 65 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ..................................................................................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtatta............................................................................ Subject: NC_003028_SP_0103_SP_0104|capsular polysaccharide biosynthesis protein, putative:hydrolase, haloacid dehalogenase-like family|POSITIVE:NEGATIVE|[106519,106955]|437 HSP 1 e-value: 2.0E-13 bit: 77.8 Len: 39 Query Start:75 Query End:113 Subject Strand: NEGATIVE Subject Start: 357 Subject End: 395 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagc................................................................................................................................................ ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagc................................................................................................................................................ HSP 2 e-value: 6.0E-10 bit: 65.9 Len: 49 Query Start:131 Query End:179 Subject Strand: NEGATIVE Subject Start: 67 Subject End: 114 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtat.............................................................................. Subject: NC_008533_SPD_0569_SPD_0570|sodium/hydrogen exchanger family protein:ribonuclease BN, putative|POSITIVE:POSITIVE|[591916,592093]|178 HSP 1 e-value: 7.0E-13 bit: 75.8 Len: 50 Query Start:73 Query End:122 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 155 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg....................................................................................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccgcaagctg....................................................................................................................................... HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 51 Query Start:131 Query End:181 Subject Strand: NEGATIVE Subject Start: 2 Subject End: 51 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ..................................................................................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtatta............................................................................ Subject: NC_008533_SPD_0441_SPD_0442|DNA-directed RNA polymerase, delta subunit, putative:CTP synthase|POSITIVE:POSITIVE|[444164,444552]|389 HSP 1 e-value: 7.0E-13 bit: 75.8 Len: 50 Query Start:73 Query End:122 Subject Strand: POSITIVE Subject Start: 127 Subject End: 176 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg....................................................................................................................................... ........................................................................ttatactcaatgaaaatcaaagtgcaagctaggaaactagccgtaggctg....................................................................................................................................... HSP 2 e-value: 2.0E-10 bit: 67.9 Len: 54 Query Start:131 Query End:184 Subject Strand: POSITIVE Subject Start: 233 Subject End: 285 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagtt......................................................................... ..................................................................................................................................tacggcaaggcgacgttgacgcggtttgaa-gagattttcgaagagtattagtt......................................................................... Subject: NC_003098_spr0573_spr0574|Na+/H+ antiporter:hypothetical protein|POSITIVE:POSITIVE|[584385,584547]|163 HSP 1 e-value: 7.0E-13 bit: 75.8 Len: 50 Query Start:73 Query End:122 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 155 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg....................................................................................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccgcaagctg....................................................................................................................................... HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 51 Query Start:131 Query End:181 Subject Strand: NEGATIVE Subject Start: 2 Subject End: 51 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ..................................................................................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtatta............................................................................ Subject: NC_003098_spr0437_spr0438|DNA-directed RNA polymerase subunit delta:CTP synthetase|POSITIVE:POSITIVE|[436634,437022]|389 HSP 1 e-value: 7.0E-13 bit: 75.8 Len: 50 Query Start:73 Query End:122 Subject Strand: POSITIVE Subject Start: 127 Subject End: 176 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg....................................................................................................................................... ........................................................................ttatactcaatgaaaatcaaagtgcaagctaggaaactagccgtaggctg....................................................................................................................................... HSP 2 e-value: 2.0E-10 bit: 67.9 Len: 54 Query Start:131 Query End:184 Subject Strand: POSITIVE Subject Start: 233 Subject End: 285 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattagtt......................................................................... ..................................................................................................................................tacggcaaggcgacgttgacgcggtttgaa-gagattttcgaagagtattagtt......................................................................... Subject: NC_003028_SP_1607_SP_1608|UDP-glucose 4-epimerase:oxidoreductase, DadA family protein|NEGATIVE:NEGATIVE|[1509447,1509746]|300 HSP 1 e-value: 7.0E-13 bit: 75.8 Len: 46 Query Start:134 Query End:179 Subject Strand: NEGATIVE Subject Start: 105 Subject End: 150 .....................................................................................................................................ggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. .....................................................................................................................................ggcaaggcgacgttgacgtagtttgaattggattttcgaagagtat.............................................................................. HSP 2 e-value: 6.0E-10 bit: 65.9 Len: 41 Query Start:76 Query End:116 Subject Strand: NEGATIVE Subject Start: 260 Subject End: 300 ...........................................................................tactcaatgaaaatcaaagagcaaactaggaaactagccgc............................................................................................................................................. ...........................................................................tactcaataaaaatcaaagaacaaactaggaaactagccgc............................................................................................................................................. Subject: NC_003028_SP_0655_SP_0657|sodium/hydrogen exchanger family protein:ribonuclease BN, putative|POSITIVE:POSITIVE|[627719,627896]|178 HSP 1 e-value: 7.0E-13 bit: 75.8 Len: 50 Query Start:73 Query End:122 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 155 ........................................................................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg....................................................................................................................................... ........................................................................ttatactcaatgaaaatcaaagagcaaactagaaagctagccgcaagctg....................................................................................................................................... HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 51 Query Start:131 Query End:181 Subject Strand: NEGATIVE Subject Start: 2 Subject End: 51 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ ..................................................................................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtatta............................................................................ Subject: NC_008533_SPD_1408_SPD_1409|hypothetical protein:sugar ABC transporter, ATP-binding protein|NEGATIVE:NEGATIVE|[1427612,1428111]|500 HSP 1 e-value: 3.0E-12 bit: 73.8 Len: 41 Query Start:75 Query End:115 Subject Strand: POSITIVE Subject Start: 201 Subject End: 241 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccg.............................................................................................................................................. ..........................................................................atactcaatggaaatcaaagagcaaactaggaaactagccg.............................................................................................................................................. HSP 2 e-value: 1.0E-11 bit: 71.9 Len: 52 Query Start:130 Query End:181 Subject Strand: POSITIVE Subject Start: 303 Subject End: 353 .................................................................................................................................gtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ .................................................................................................................................gtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtatta............................................................................ Subject: NC_003098_spr1436_spr1437|hypothetical protein:ABC transporter ATP-binding protein - multiple sugar transport|NEGATIVE:NEGATIVE|[1420081,1420580]|500 HSP 1 e-value: 3.0E-12 bit: 73.8 Len: 41 Query Start:75 Query End:115 Subject Strand: POSITIVE Subject Start: 201 Subject End: 241 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccg.............................................................................................................................................. ..........................................................................atactcaatggaaatcaaagagcaaactaggaaactagccg.............................................................................................................................................. HSP 2 e-value: 1.0E-11 bit: 71.9 Len: 52 Query Start:130 Query End:181 Subject Strand: POSITIVE Subject Start: 303 Subject End: 353 .................................................................................................................................gtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ .................................................................................................................................gtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtatta............................................................................ Subject: NC_003028_SP_1579_SP_1580|hypothetical protein:sugar ABC transporter, ATP-binding protein|NEGATIVE:NEGATIVE|[1484730,1485134]|405 HSP 1 e-value: 3.0E-12 bit: 73.8 Len: 41 Query Start:75 Query End:115 Subject Strand: POSITIVE Subject Start: 106 Subject End: 146 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccg.............................................................................................................................................. ..........................................................................atactcaatggaaatcaaagagcaaactaggaaactagccg.............................................................................................................................................. HSP 2 e-value: 1.0E-11 bit: 71.9 Len: 52 Query Start:130 Query End:181 Subject Strand: POSITIVE Subject Start: 208 Subject End: 258 .................................................................................................................................gtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta............................................................................ .................................................................................................................................gtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtatta............................................................................ Subject: NC_003028_SP_0120_SP_0121|glucose-inhibited division protein A:metallo-beta-lactamase superfamily protein|POSITIVE:NEGATIVE|[124699,125050]|352 HSP 1 e-value: 3.0E-12 bit: 73.8 Len: 41 Query Start:75 Query End:115 Subject Strand: NEGATIVE Subject Start: 248 Subject End: 288 ..........................................................................atactcaatgaaaatcaaagagcaaactaggaaactagccg.............................................................................................................................................. ..........................................................................atactcaatgaaaatcaaagagcaaactaggaagctagccg.............................................................................................................................................. HSP 2 e-value: 2.0E-7 bit: 58.0 Len: 49 Query Start:131 Query End:179 Subject Strand: NEGATIVE Subject Start: 138 Subject End: 185 ..................................................................................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.............................................................................. ..................................................................................................................................tacggcaaggcgacgttgacgcggtttgaa-gagattttcgaagagtat.............................................................................. Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUAGAUAUAAAAGCAAUGUCAUUUCAUAAAUUGGAGAAUUAUACUCAAUGAAAAUCAAAGAGCAAACUAGGAAACUAGCCGCAGGCUGUACUUGAGUACGGCAAGGCGACGUUGACGUGGUUUGAAUUUGAUUUUCGAAGAGUAUUAGUUUUAUUUCUACUGAAUCUCCCAUCUACUUAUUCCUAAAGUUGCUUUCAUUUGCCUCUUUUGAUACACUUAAACU ..(((((.........(((......))).....(((((....(((((..(((((((((((...((((((((..(((..(((....(((((((....)))))))..)))...)))..).)))))))..)))))))))))..)))))(((((.........))))).))))).))))).....((..((((..((........))..)))).))............ (-58.40) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGUUUAAGUGUAUCAAAAGAGGCAAAUGAAAGCAACUUUAGGAAUAAGUAGAUGGGAGAUUCAGUAGAAAUAAAACUAAUACUCUUCGAAAAUCAAAUUCAAACCACGUCAACGUCGCCUUGCCGUACUCAAGUACAGCCUGCGGCUAGUUUCCUAGUUUGCUCUUUGAUUUUCAUUGAGUAUAAUUCUCCAAUUUAUGAAAUGACAUUGCUUUUAUAUCUAAA ........(((.((....)).))).((((((((((..(((.......((((((.(((((.....((....))......((((((...((((((((((..(((((...(..((((((((...((.((((....)))).))..)))))..)))..)..)))))...))))))))))...))))))...))))).))))))....)))..))))))))))....... (-55.50) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1074 120 71 196 147 smit:SMT_1602|5end_hypothetical_protein_1592385..1592615_POSITIVE 1074 120 71 221 172 smit:SMT_833|5end_hypothetical_protein_predicted_by_Glimmer/Critica_775362..775592_NEGATIVE 1070 120 71 205 156 smit:SMT_130|5end_capsular_polysaccharide_biosynthesis_protein_80995..81225_POSITIVE 1042 110 61 198 149 smit:SMT_1488|5end_K06147_ATP-binding_cassette,_subfamily_B,_bacterial_1467157..1467387_POSITIVE 991 110 61 220 171 smit:SMT_1810|5end_hypothetical_protein_1785219..1785449_POSITIVE 958 107 61 231 185 smit:SMT_1138|5end_hypothetical_protein_1079547..1079777_NEGATIVE 943 120 71 195 146 smit:SMT_1963|5end_ribonuclease_BN,_putative_1896462..1896692_NEGATIVE 943 120 71 182 133 smit:SMT_483|5end_transcriptional_activator_TipA,_putative_418827..419057_POSITIVE 833 110 61 183 134 smit:SMT_1782|5end_hypothetical_protein_1759520..1759750_POSITIVE 833 89 42 152 105 smit:SMT_1200|5end_K06148_ATP-binding_cassette,_subfamily_C,_bacterial_1163235..1163465_NEGATIVE 808 100 51 227 178 smit:SMT_1179|5end_aldose_1-epimerase_1137854..1138084_NEGATIVE 776 140 94 47 1 smit:SMT_2109|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1999099..1999329_NEGATIVE 753 89 42 162 115 smit:SMT_366|5end_hypothetical_protein_302085..302315_POSITIVE 730 89 42 219 172 smit:SMT_1379|5end_thymidylate_kinase_1357438..1357668_NEGATIVE 687 146 101 85 41 smit:SMT_958|5end_hypothetical_protein_predicted_by_Glimmer/Critica_905052..905282_POSITIVE 646 87 45 231 189 smit:SMT_443|5end_hydroxyethylthiazole_kinase_382555..382785_POSITIVE 636 89 42 194 148 smit:SMT_150|5end_K02030_polar_amino_acid_transport_system_substrate-binding_protein_98787..99017_POSITIVE 595 89 42 159 112 smit:SMT_163|5end_cardiolipin_synthetase_107309..107539_POSITIVE 591 148 101 222 176 smit:SMT_677|5end_DNA_topoisomerase_I_587318..587548_NEGATIVE 552 89 41 156 108 smit:SMT_775|5end_alpha-acetolactate_decarboxylase_685972..686202_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1074 120 71 66 17 smit:SMT_834|3end_hypothetical_protein_775517..775667_NEGATIVE 1074 120 71 65 16 smit:SMT_698|3end_uracil_permease_609769..609919_POSITIVE 996 120 71 65 16 smit:SMT_1140|3end_glycogen_phosphorylase_1081316..1081466_NEGATIVE 991 110 61 55 6 smit:SMT_1809|3end_MutT/NUDIX_family_protein_1785134..1785284_POSITIVE 967 120 71 66 17 smit:SMT_1477|3end_K02077_zinc/manganese_transport_system_substrate-binding_protein_1459447..1459597_NEGATIVE 963 118 74 45 1 smit:SMT_1487|3end_hypothetical_protein_1467076..1467226_POSITIVE 943 120 71 61 12 smit:SMT_1964|3end_sodium/hydrogen_exchanger_family_protein_1896596..1896746_NEGATIVE 935 110 61 55 6 smit:SMT_2109|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1999061..1999211_NEGATIVE 935 110 61 55 6 smit:SMT_1180|3end_putative_tagatose-6-phosphate_aldose/ketose_isomerase_1138036..1138186_NEGATIVE 914 120 71 66 17 smit:SMT_915|3end_sucrose_operon_repressor_868619..868769_POSITIVE 910 110 61 53 4 smit:SMT_799|3end_hypothetical_protein_707296..707446_NEGATIVE 896 130 81 52 3 smit:SMT_1671|3end_hypothetical_protein_1659392..1659542_NEGATIVE 885 120 71 61 12 smit:SMT_1536|3end_trigger_factor_1520636..1520786_NEGATIVE 882 130 81 68 19 smit:SMT_1766|3end_sucrose-6-phosphate_hydrolase_1743101..1743251_POSITIVE 845 130 81 75 26 smit:SMT_890|3end_K02029_polar_amino_acid_transport_system_permease_protein_837692..837842_POSITIVE 770 149 101 94 46 smit:SMT_913|3end_putative_sucrose-specific_PTS_permease,_enzyme_II_863923..864073_NEGATIVE 747 150 101 90 42 smit:SMT_1569|3end_dihydroxy-acid_dehydratase_1563068..1563218_POSITIVE 733 140 92 49 1 smit:SMT_442|3end_transcriptional_regulator,_putative_382400..382550_POSITIVE 695 149 101 94 48 smit:SMT_1216|3end_hypothetical_protein_1175969..1176119_POSITIVE 657 148 101 93 47 smit:SMT_1471|3end_hypothetical_protein_1453442..1453592_NEGATIVE