Origin IGS: gctttctctaaggaaatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaagctagctttcaggtttgccctttatactagagtcatcaaaaagaaacgaggactctcatatgacagtaacgattaaagtaaattaccaaaccactttccagaagaaagaagcaacaaaataatataaatagaaggaagaaagagcgaaatgctcttttttcgtttctaaaactactttcagcccatcatcctaaaagtaaagaatctaaaatctctttctatttacccttctttcttgcattgcttttctagatatgctagagtggtggtagcgattacaaaaaaggagcatgct .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 agcatgctccttttttgtaatcgctaccaccactctagcatatctagaaaagcaatgcaagaaagaagggtaaatagaaagagattttagattctttacttttaggatgatgggctgaaagtagttttagaaacgaaaaaagagcatttcgctctttcttccttctatttatattattttgttgcttctttcttctggaaagtggtttggtaatttactttaatcgttactgtcatatgagagtcctcgtttctttttgatgactctagtataaagggcaaacctgaaagctagcttaatactcttcgaaaatcaaattcaaaccacgtcagcgtcgccttaccgtactcaagtacagcttgcggctagcttcctagtttgctctttgattttcattgagtataagatttccttagagaaagc Mask Tandem Repeat Region ================================================ gctttctctaaggaaatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaagctagctttcaggtttgccctttatactagagtcatcaaaaagaaacgaggactctcatatgacagtaacgattaaagtaaattaccaaaccactttccagaagaaagaagcaacaaaataatataaatagaaggaagaaagagcgaaatgctcttttttcgtttctaaaactactttcagcccatcatcctaaaagtaaagaatctaaaatctctttctatttacccttctttcttgcattgcttttctagatatgctagagtggtggtagcgattacaaaaaaggagcatgct Find is-nt database================================================ Query_seq: SMT_1068:SMT_1069|SMT_1068:SMT_1069:ATP-dependent DNA helicase RecG:acetyl xylan esterase, putative:->->:1009047..1009469 423 gctttctctaaggaaatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaagctagctttcaggtttgccctttatactagagtcatcaaaaagaaacgaggactctcatatgacagtaacgattaaagtaaattaccaaaccactttccagaagaaagaagcaacaaaataatataaatagaaggaagaaagagcgaaatgctcttttttcgtttctaaaactactttcagcccatcatcctaaaagtaaagaatctaaaatctctttctatttacccttctttcttgcattgcttttctagatatgctagagtggtggtagcgattacaaaaaaggagcatgct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1068:SMT_1069|SMT_1068:SMT_1069:ATP-dependent DNA helicase RecG:acetyl xylan esterase, putative:->->:1009047..1009469 423 gctttctctaaggaaatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaagctagctttcaggtttgccctttatactagagtcatcaaaaagaaacgaggactctcatatgacagtaacgattaaagtaaattaccaaaccactttccagaagaaagaagcaacaaaataatataaatagaaggaagaaagagcgaaatgctcttttttcgtttctaaaactactttcagcccatcatcctaaaagtaaagaatctaaaatctctttctatttacccttctttcttgcattgcttttctagatatgctagagtggtggtagcgattacaaaaaaggagcatgct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1068:SMT_1069|SMT_1068:SMT_1069:ATP-dependent DNA helicase RecG:acetyl xylan esterase, putative:->->:1009047..1009469 423 gctttctctaaggaaatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaagctagctttcaggtttgccctttatactagagtcatcaaaaagaaacgaggactctcatatgacagtaacgattaaagtaaattaccaaaccactttccagaagaaagaagcaacaaaataatataaatagaaggaagaaagagcgaaatgctcttttttcgtttctaaaactactttcagcccatcatcctaaaagtaaagaatctaaaatctctttctatttacccttctttcttgcattgcttttctagatatgctagagtggtggtagcgattacaaaaaaggagcatgct Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gctttctctaaggaaatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaagctagctttcaggtttgccctttatactagagtcatcaaaaagaaacgaggactctcatatgacagtaacgattaaagtaaattaccaaaccactttccagaagaaagaagcaacaaaataatataaatagaaggaagaaagagcgaaatgctcttttttcgtttctaaaactactttcagcccatcatcctaaaagtaaagaatctaaaatctctttctatttacccttctttcttgcattgcttttctagatatgctagagtggtggtagcgattacaaaaaaggagcatgct Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 143 End: 247 .............................................................................................................................................. M P F I L E S S K R N E D S H M T V T I K V N Y Q T T F Q K K E A T K ................................................................................................................................................................................ Protein_Len: 56 Strand: + Start: 210 End: 377 ................................................................................................................................................................................................................. M T K P L S R R K K Q Q N N I N R R K K E R N A L F S F L K L L S A H H P K S K E S K I S F Y L P F F L A L L F .............................................. Protein_Len: 37 Strand: + Start: 313 End: 423 ........................................................................................................................................................................................................................................................................................................................ M I L K V K N L K S L S I Y P S F L H C F S R Y A R V V V A I T K K E H A Protein_Len: 32 Strand: - Start: 214 End: 309 ..................................................................................................................................................................................................................... W V V K W F F S A V F Y Y L Y F S S L A F H E K K T E L V V K M .................................................................................................................. Protein_Len: 46 Strand: - Start: 3 End: 140 .. K E L S I K Y E I F I L S C V L F S A A L Q V Q T R Y P S A S T T Q I Q N E F L I L S A K M ........................................................................................................................................................................................................................................................................................... gctttctctaaggaaatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaagctagctttcaggtttgccctttatactagagtcatcaaaaagaaacgaggactctcatatgacagtaacgattaaagtaaattaccaaaccactttccagaagaaagaagcaacaaaataatataaatagaaggaagaaagagcgaaatgctcttttttcgtttctaaaactactttcagcccatcatcctaaaagtaaagaatctaaaatctctttctatttacccttctttcttgcattgcttttctagatatgctagagtggtggtagcgattacaaaaaaggagcatgct Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gctttctctaaggaaatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaagctagctttcaggtttgccctttatactagagtcatcaaaaagaaacgaggactctcatatgacagtaacgattaaagtaaattaccaaaccactttccagaagaaagaagcaacaaaataatataaatagaaggaagaaagagcgaaatgctcttttttcgtttctaaaactactttcagcccatcatcctaaaagtaaagaatctaaaatctctttctatttacccttctttcttgcattgcttttctagatatgctagagtggtggtagcgattacaaaaaaggagcatgct Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 74 HP_score: -7.5 Tail_Score: -3.88559 Start: 262 End: 290 Full_Region: ATAATATAAATAGAA GGAAGAAAGAGCG AAA TGCTCTTTTTTCG TTTCTAAAACTACTT .....................................................................................................................................................................................................................................................................GGAAGAAAGAGCGAAATGCTCTTTTTTCG..................................................................................................................................... TransTerm Strand: + Conf: 79 HP_score: -11.0 Tail_Score: -2.92653 Start: 263 End: 289 Full_Region: TAATATAAATAGAAG GAAGAAAGAGCG AAA TGCTCTTTTTTC GTTTCTAAAACTACT ......................................................................................................................................................................................................................................................................GAAGAAAGAGCGAAATGCTCTTTTTTC...................................................................................................................................... TransTerm Strand: - Conf: 67 HP_score: -8.1 Tail_Score: -2.97129 Start: 263 End: 289 Full_Region: agtagttttagaaac gaaaaaagagc atttc gctctttcttc cttctatttatatta ......................................................................................................................................................................................................................................................................gaaaaaagagcatttcgctctttcttc...................................................................................................................................... TransTerm Strand: + Conf: 86 HP_score: -5.5 Tail_Score: -5.42514 Start: 270 End: 282 Full_Region: AATAGAAGGAAGAAA GAGCG AAA TGCTC TTTTTTCGTTTCTAA .............................................................................................................................................................................................................................................................................GAGCGAAATGCTC............................................................................................................................................. Find igs database================================================ Query_seq: SMT_1068:SMT_1069|SMT_1068:SMT_1069:ATP-dependent DNA helicase RecG:acetyl xylan esterase, putative:->->:1009047..1009469 423 gctttctctaaggaaatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaagctagctttcaggtttgccctttatactagagtcatcaaaaagaaacgaggactctcatatgacagtaacgattaaagtaaattaccaaaccactttccagaagaaagaagcaacaaaataatataaatagaaggaagaaagagcgaaatgctcttttttcgtttctaaaactactttcagcccatcatcctaaaagtaaagaatctaaaatctctttctatttacccttctttcttgcattgcttttctagatatgctagagtggtggtagcgattacaaaaaaggagcatgct Intra-Species Hit: Count: 38 Min: 1 Max: 423 Len: 423 Subject: smit_SMT_1068_SMT_1069|ATP-dependent DNA helicase RecG:acetyl xylan esterase, putative|POSITIVE:POSITIVE|[1009047,1009469]|423 HSP 1 e-value: 0.0 bit: 839.0 Len: 423 Query Start:1 Query End:423 Subject Strand: POSITIVE Subject Start: 1 Subject End: 423 gctttctctaaggaaatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaagctagctttcaggtttgccctttatactagagtcatcaaaaagaaacgaggactctcatatgacagtaacgattaaagtaaattaccaaaccactttccagaagaaagaagcaacaaaataatataaatagaaggaagaaagagcgaaatgctcttttttcgtttctaaaactactttcagcccatcatcctaaaagtaaagaatctaaaatctctttctatttacccttctttcttgcattgcttttctagatatgctagagtggtggtagcgattacaaaaaaggagcatgct gctttctctaaggaaatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaagctagctttcaggtttgccctttatactagagtcatcaaaaagaaacgaggactctcatatgacagtaacgattaaagtaaattaccaaaccactttccagaagaaagaagcaacaaaataatataaatagaaggaagaaagagcgaaatgctcttttttcgtttctaaaactactttcagcccatcatcctaaaagtaaagaatctaaaatctctttctatttacccttctttcttgcattgcttttctagatatgctagagtggtggtagcgattacaaaaaaggagcatgct Subject: smit_SMT_1963_SMT_1964|ribonuclease BN, putative:sodium/hydrogen exchanger family protein|NEGATIVE:NEGATIVE|[1896553,1896685]|133 HSP 1 e-value: 2.0E-54 bit: 214.0 Len: 114 Query Start:15 Query End:128 Subject Strand: POSITIVE Subject Start: 20 Subject End: 133 ..............aatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... ..............aatcttatactcmatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_482_SMT_483|hypothetical protein predicted by Glimmer/Critica:transcriptional activator TipA, putative|NEGATIVE:POSITIVE|[418627,418966]|340 HSP 1 e-value: 3.0E-53 bit: 210.0 Len: 110 Query Start:18 Query End:127 Subject Strand: NEGATIVE Subject Start: 222 Subject End: 331 .................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ .................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ Subject: smit_SMT_1670_SMT_1671|K02030 polar amino acid transport system substrate-binding protein:hypothetical protein|POSITIVE:NEGATIVE|[1659356,1659481]|126 HSP 1 e-value: 5.0E-52 bit: 206.0 Len: 104 Query Start:22 Query End:125 Subject Strand: POSITIVE Subject Start: 1 Subject End: 104 .....................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... .....................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1766_SMT_1767|sucrose-6-phosphate hydrolase:oxidoreductase, short chain dehydrogenase/reductase family|POSITIVE:NEGATIVE|[1743162,1743332]|171 HSP 1 e-value: 2.0E-51 bit: 204.0 Len: 111 Query Start:18 Query End:128 Subject Strand: NEGATIVE Subject Start: 4 Subject End: 114 .................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... .................cttatactcaatgaaaatcaaagagcaaactaggaagctagtcgcaagctgtacttgagtacggtgaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_2133_SMT_2134|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[2014098,2014211]|114 HSP 1 e-value: 4.0E-49 bit: 196.0 Len: 103 Query Start:25 Query End:127 Subject Strand: NEGATIVE Subject Start: 12 Subject End: 114 ........................tcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ ........................tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ Subject: smit_SMT_872_SMT_873|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[820709,820822]|114 HSP 1 e-value: 4.0E-49 bit: 196.0 Len: 103 Query Start:25 Query End:127 Subject Strand: NEGATIVE Subject Start: 12 Subject End: 114 ........................tcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ ........................tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ Subject: smit_SMT_384_SMT_385|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[319921,320034]|114 HSP 1 e-value: 4.0E-49 bit: 196.0 Len: 103 Query Start:25 Query End:127 Subject Strand: POSITIVE Subject Start: 1 Subject End: 103 ........................tcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ ........................tcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ Subject: smit_SMT_1139_SMT_1140|rRNA (guanine-N1-)-methyltransferase:glycogen phosphorylase|POSITIVE:NEGATIVE|[1080744,1081405]|662 HSP 1 e-value: 7.0E-48 bit: 192.0 Len: 109 Query Start:16 Query End:124 Subject Strand: POSITIVE Subject Start: 554 Subject End: 662 ...............atcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... ...............atcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1809_SMT_1810|MutT/NUDIX family protein:hypothetical protein|POSITIVE:POSITIVE|[1785195,1785358]|164 HSP 1 e-value: 4.0E-46 bit: 186.0 Len: 106 Query Start:19 Query End:124 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 106 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1534_SMT_1535|signal peptidase I:exodeoxyribonuclease V alpha chain|POSITIVE:POSITIVE|[1517973,1518206]|234 HSP 1 e-value: 4.0E-46 bit: 186.0 Len: 110 Query Start:19 Query End:128 Subject Strand: POSITIVE Subject Start: 97 Subject End: 206 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcgaaactgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1393_SMT_1394|hypothetical protein:hypothetical protein predicted by Glimmer/Critica|POSITIVE:POSITIVE|[1369621,1370215]|595 HSP 1 e-value: 4.0E-46 bit: 186.0 Len: 110 Query Start:19 Query End:128 Subject Strand: NEGATIVE Subject Start: 149 Subject End: 258 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... ..................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1138_SMT_1139|hypothetical protein:rRNA (guanine-N1-)- methyltransferase|NEGATIVE:POSITIVE|[1079638, 1079894]|257 HSP 1 e-value: 2.0E-45 bit: 184.0 Len: 109 Query Start:19 Query End:127 Subject Strand: POSITIVE Subject Start: 73 Subject End: 181 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ ..................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ Subject: smit_SMT_662_SMT_663|A/G-specific adenine glycosylase:phosphate acetyltransferase|NEGATIVE:NEGATIVE|[573918,574105]|188 HSP 1 e-value: 1.0E-43 bit: 178.0 Len: 106 Query Start:19 Query End:124 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 155 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... ..................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_259_SMT_260|dipeptide/tripeptide permease:phage transcriptional repressor|POSITIVE:POSITIVE|[199242,199609]|368 HSP 1 e-value: 1.0E-43 bit: 178.0 Len: 110 Query Start:19 Query End:128 Subject Strand: NEGATIVE Subject Start: 101 Subject End: 210 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... ..................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1601_SMT_1602|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|POSITIVE:POSITIVE|[1592204,1592524]|321 HSP 1 e-value: 4.0E-43 bit: 176.0 Len: 105 Query Start:21 Query End:125 Subject Strand: NEGATIVE Subject Start: 191 Subject End: 295 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... ....................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_826_SMT_827|hypothetical protein:hypothetical protein|NEGATIVE:POSITIVE|[750113,750528]|416 HSP 1 e-value: 4.0E-43 bit: 176.0 Len: 109 Query Start:18 Query End:126 Subject Strand: NEGATIVE Subject Start: 104 Subject End: 212 .................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatt......................................................................................................................................................................................................................................................................................................... .................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggttgtactggagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagtatt......................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_2108_SMT_2109|adenylosuccinate lyase:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1998942,1999150]|209 HSP 1 e-value: 2.0E-42 bit: 174.0 Len: 108 Query Start:17 Query End:124 Subject Strand: POSITIVE Subject Start: 102 Subject End: 209 ................tcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... ................tcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1179_SMT_1180|aldose 1-epimerase:putative tagatose-6-phosphate aldose/ketose isomerase|NEGATIVE:NEGATIVE|[1137945,1138125]|181 HSP 1 e-value: 2.0E-42 bit: 174.0 Len: 108 Query Start:17 Query End:124 Subject Strand: POSITIVE Subject Start: 74 Subject End: 181 ................tcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... ................tcttatactcaatgaaaatcaaagagcaaactagaaagctagccacaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_915_SMT_916|sucrose operon repressor:3-hydroxy-3-methylglutaryl-CoA reductase|POSITIVE:NEGATIVE|[868680,868819]|140 HSP 1 e-value: 6.0E-42 bit: 172.0 Len: 107 Query Start:18 Query End:124 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 106 .................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... .................cttatactcaatgaaaatcaaagagcgaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta........................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_890_SMT_891|K02029 polar amino acid transport system permease protein:oxidoreductase, putative|POSITIVE:POSITIVE|[837753,837989]|237 HSP 1 e-value: 3.0E-41 bit: 170.0 Len: 106 Query Start:19 Query End:124 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 106 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagacgcaggctgtacttgagtacggcaaggtgaagctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1535_SMT_1536|exodeoxyribonuclease V alpha chain:trigger factor|POSITIVE:NEGATIVE|[1520574,1520725]|152 HSP 1 e-value: 1.0E-40 bit: 168.0 Len: 105 Query Start:21 Query End:125 Subject Strand: POSITIVE Subject Start: 45 Subject End: 148 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... ....................atactcaatgaaaatcaaagagcaaactaggaagctagccacaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_129_SMT_130|putative glycosyltransferase:capsular polysaccharide biosynthesis protein|POSITIVE:POSITIVE|[80944,81134]|191 HSP 1 e-value: 1.0E-40 bit: 168.0 Len: 109 Query Start:19 Query End:127 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 158 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ ..................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagcatta........................................................................................................................................................................................................................................................................................................ Subject: smit_SMT_698_SMT_699|uracil permease:K03106 signal recognition particle, subunit SRP54|POSITIVE:NEGATIVE|[609830,610030]|201 HSP 1 e-value: 4.0E-40 bit: 167.0 Len: 104 Query Start:21 Query End:124 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 104 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... ....................atactcaatgaaaatcaaagaacaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1781_SMT_1782|transcriptional regulator, xre family:hypothetical protein|POSITIVE:POSITIVE|[1759357,1759659]|303 HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 105 Query Start:21 Query End:125 Subject Strand: NEGATIVE Subject Start: 176 Subject End: 280 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgaaggctgtacttgagtacggcaaggtgaagctgacgtagtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_442_SMT_443|transcriptional regulator, putative:hydroxyethylthiazole kinase|POSITIVE:POSITIVE|[382461,382694]|234 HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 109 Query Start:19 Query End:127 Subject Strand: NEGATIVE Subject Start: 34 Subject End: 142 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ ..................ttatgctcaatgaaaatcaaagagcaaactaggaagctagccgtaggctgtacttgagtacggcaaggtgaagctgacgtggtttgaatttgattttcgaagagaatta........................................................................................................................................................................................................................................................................................................ Subject: smit_SMT_798_SMT_799|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[707167,707385]|219 HSP 1 e-value: 6.0E-36 bit: 153.0 Len: 109 Query Start:19 Query End:127 Subject Strand: POSITIVE Subject Start: 112 Subject End: 219 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggtgaagctgacgtggtttgaa-gagattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ Subject: smit_SMT_1487_SMT_1488|hypothetical protein:K06147 ATP-binding cassette, subfamily B, bacterial|POSITIVE:POSITIVE|[1467137,1467296]|160 HSP 1 e-value: 2.0E-35 bit: 151.0 Len: 104 Query Start:21 Query End:124 Subject Strand: NEGATIVE Subject Start: 19 Subject End: 122 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... ....................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtactcgagtacggcaaggcgacgttgacgcagtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1476_SMT_1477|thiol peroxidase:K02077 zinc/manganese transport system substrate-binding protein|NEGATIVE:NEGATIVE|[1459310,1459536]|227 HSP 1 e-value: 9.0E-35 bit: 149.0 Len: 107 Query Start:18 Query End:124 Subject Strand: POSITIVE Subject Start: 122 Subject End: 227 .................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... .................cttatactcaatgaaaatcaaagagcaaactaggaagctagccacaggctgtacttgagtacggcaaggcaacgctgacgtggtttgaa-gagattttcgaagagta........................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_833_SMT_834|hypothetical protein predicted by Glimmer/Critica:hypothetical protein|NEGATIVE:NEGATIVE|[775453,775606]|154 HSP 1 e-value: 4.0E-34 bit: 147.0 Len: 106 Query Start:19 Query End:124 Subject Strand: POSITIVE Subject Start: 50 Subject End: 154 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... ..................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagta........................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1849_SMT_1850|hypothetical protein:K01421 putative membrane protein|POSITIVE:POSITIVE|[1813865,1815201]|1337 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 105 Query Start:21 Query End:125 Subject Strand: POSITIVE Subject Start: 257 Subject End: 360 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... ....................atactcaatgaaaatcaaagatcaaactaggaagctagccgtagtcagtacttgagtacggcaaggcgaagctgacgtggtttgaa-gagattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1689_SMT_1690|PTS enzyme, maltose-and glucose-specific, factor II homologue:K06148 ATP-binding cassette, subfamily C, bacterial|POSITIVE:NEGATIVE|[1673200,1673459]|260 HSP 1 e-value: 5.0E-21 bit: 103.0 Len: 104 Query Start:22 Query End:125 Subject Strand: POSITIVE Subject Start: 1 Subject End: 103 .....................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... .....................tactcaatgaaaatcaaagagcaaactgggaagctaggcgcaggctatacttgagtacgccaaggcgaagctggcatggtttgaa-gagattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1544_SMT_1545|mevalonate kinase:choline-binding protein|NEGATIVE:NEGATIVE|[1528975,1529249]|275 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 51 Query Start:77 Query End:127 Subject Strand: POSITIVE Subject Start: 136 Subject End: 186 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 43 Query Start:21 Query End:63 Subject Strand: POSITIVE Subject Start: 33 Subject End: 75 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ ....................atactcaatgaaaatcaaaaagcaaactatgaagctacccgca........................................................................................................................................................................................................................................................................................................................................................................ Subject: smit_SMT_1814_SMT_1815|amino acid transporter:K02035 peptide/nickel transport system substrate-binding protein|POSITIVE:NEGATIVE|[1788701,1788988]|288 HSP 1 e-value: 5.0E-18 bit: 93.7 Len: 51 Query Start:18 Query End:68 Subject Strand: POSITIVE Subject Start: 65 Subject End: 115 .................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg................................................................................................................................................................................................................................................................................................................................................................... .................cttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-9 bit: 63.9 Len: 52 Query Start:77 Query End:128 Subject Strand: POSITIVE Subject Start: 216 Subject End: 266 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... ............................................................................tacggtaaggcaacgctgacgtggtttgaa-gagattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1554_SMT_1555|isoleucyl-tRNA synthetase:hypothetical protein|POSITIVE:NEGATIVE|[1539973,1540312]|340 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 110 Query Start:19 Query End:128 Subject Strand: NEGATIVE Subject Start: 146 Subject End: 254 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... ..................ttatactaaatgaaaatcaaaaagcaaactaggaagctagtcgcaagctgtgctgaagtacagtgaggcgacattgacgtagtttgaa-gagattttcgaaaagtattaa....................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_1200_SMT_1201|K06148 ATP-binding cassette, subfamily C, bacterial:hypothetical protein predicted by Glimmer/Critica|NEGATIVE:NEGATIVE|[1163326,1163854]|529 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 49 Query Start:77 Query End:125 Subject Strand: POSITIVE Subject Start: 116 Subject End: 164 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... ............................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-11 bit: 71.9 Len: 48 Query Start:21 Query End:68 Subject Strand: POSITIVE Subject Start: 14 Subject End: 61 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg................................................................................................................................................................................................................................................................................................................................................................... ....................atactcaatgaaaatcaaagagcaaactagaaaactagccgcaggctg................................................................................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_912_SMT_913|fructokinase:putative sucrose-specific PTS permease, enzyme II|NEGATIVE:NEGATIVE|[863711,864012]|302 HSP 1 e-value: 7.0E-14 bit: 79.8 Len: 40 Query Start:22 Query End:61 Subject Strand: POSITIVE Subject Start: 152 Subject End: 191 .....................tactcaatgaaaatcaaagagcaaactaggaagctagccg.......................................................................................................................................................................................................................................................................................................................................................................... .....................tactcaatgaaaatcaaagagcaaactaggaagctagccg.......................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-11 bit: 71.9 Len: 48 Query Start:77 Query End:124 Subject Strand: POSITIVE Subject Start: 255 Subject End: 302 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... ............................................................................tacggcaaggcgaagctgacatggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... Subject: smit_SMT_217_SMT_218|hypothetical protein:undecaprenyl pyrophosphate synthetase|POSITIVE:POSITIVE|[149949,150294]|346 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 43 Query Start:21 Query End:63 Subject Strand: POSITIVE Subject Start: 158 Subject End: 200 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ ....................atactcaatgaaaatcaaagaccaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 7.0E-11 bit: 69.9 Len: 35 Query Start:91 Query End:125 Subject Strand: POSITIVE Subject Start: 237 Subject End: 271 ..........................................................................................gctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... ..........................................................................................gctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 57 Min: 1 Max: 423 Len: 423 Subject: NC_008533_SPD_1506_SPD_1507|acetyl xylan esterase, putative:ATP-dependent DNA helicase RecG|NEGATIVE:NEGATIVE|[1527928,1528242]|315 HSP 1 e-value: 5.0E-92 bit: 339.0 Len: 299 Query Start:125 Query End:423 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 297 ............................................................................................................................ttaagctagctttcaggtttgccctttatactagagtcatcaaaaagaaacgaggactctcatatgacagtaacgattaaagtaaattaccaaaccactttccagaagaaagaagcaacaaaataatataaatagaaggaagaaagagcgaaatgctcttttttcgtttctaaaactactttcagcccatcatcctaaaagtaaagaatctaaaatctctttctatttacccttctttcttgcattgcttttctagatatgctagagtggtggtagcgattacaa---aaaaggagcatgct ............................................................................................................................ttaagctagtttttaggtttggctcttatactaaagtcatcaaaaagaaacgaggactctcatatgacagtaacgattaaagtaaattaccaaaccactttccaaaagaaggaagcaaaaaactagtataaaca----gaagagagagcgaaatgctc-tttttcgtttctaaaactactttcagcccatcatcctaaaagtaaagaatctaaattcactttctatttatccttctttcttgcattgattacatagatatgctacagttgtggtaacgattacaaaataaaaggagcatgct Subject: NC_003098_spr1538_spr1539|Xylan esterase 1:Branch migration of Holliday junctions, junction-specific DNA helicase|NEGATIVE:NEGATIVE|[1520397,1520711]|315 HSP 1 e-value: 5.0E-92 bit: 339.0 Len: 299 Query Start:125 Query End:423 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 297 ............................................................................................................................ttaagctagctttcaggtttgccctttatactagagtcatcaaaaagaaacgaggactctcatatgacagtaacgattaaagtaaattaccaaaccactttccagaagaaagaagcaacaaaataatataaatagaaggaagaaagagcgaaatgctcttttttcgtttctaaaactactttcagcccatcatcctaaaagtaaagaatctaaaatctctttctatttacccttctttcttgcattgcttttctagatatgctagagtggtggtagcgattacaa---aaaaggagcatgct ............................................................................................................................ttaagctagtttttaggtttggctcttatactaaagtcatcaaaaagaaacgaggactctcatatgacagtaacgattaaagtaaattaccaaaccactttccaaaagaaggaagcaaaaaactagtataaaca----gaagagagagcgaaatgctc-tttttcgtttctaaaactactttcagcccatcatcctaaaagtaaagaatctaaattcactttctatttatccttctttcttgcattgattacatagatatgctacagttgtggtaacgattacaaaataaaaggagcatgct Subject: NC_003028_SP_1695_SP_1696|acetyl xylan esterase, putative:hypothetical protein|NEGATIVE:NEGATIVE|[1600439,1600610]|172 HSP 1 e-value: 1.0E-55 bit: 218.0 Len: 161 Query Start:263 Query End:423 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 164 ......................................................................................................................................................................................................................................................................gaagaaagagcgaaatgctcttttttcgtttctaaaactactttcagcccatcatcctaaaagtaaagaatctaaaatctctttctatttacccttctttcttgcattgcttttctagatatgctagagtggtggtagcgattacaa---aaaaggagcatgct ......................................................................................................................................................................................................................................................................gaagagagagcgaaatgctcttttttcgtttctaaaactactttcagcccatcatcctaaaagtaaagaatctaaattcactttctatttacccttctttcttgcattgattacatagatatgctacagttgtggtaacgattacaaaataaaaggagcatgct Subject: NC_003028_SP_2183_SP_2184|hypothetical protein:glycerol uptake facilitator protein|NEGATIVE:NEGATIVE|[2101749,2102044]|296 HSP 1 e-value: 1.0E-52 bit: 208.0 Len: 105 Query Start:21 Query End:125 Subject Strand: POSITIVE Subject Start: 189 Subject End: 293 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_1180_SP_1181|ribonucleotide-diphosphate reductase beta subunit:hypothetical protein|POSITIVE:NEGATIVE|[1119540,1119753]|214 HSP 1 e-value: 4.0E-46 bit: 186.0 Len: 106 Query Start:19 Query End:124 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 106 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggcaaggcgaagctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_0816_SP_0817|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[768501,768664]|164 HSP 1 e-value: 4.0E-46 bit: 186.0 Len: 106 Query Start:19 Query End:124 Subject Strand: POSITIVE Subject Start: 59 Subject End: 164 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctatacttgagtacggtaaggcgacgctgacgtggtttgaattttattttcgaagagta........................................................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_0096_SP_0097|hypothetical protein:hypothetical protein|POSITIVE:NEGATIVE|[98992,99168]|177 HSP 1 e-value: 7.0E-45 bit: 182.0 Len: 104 Query Start:22 Query End:125 Subject Strand: POSITIVE Subject Start: 69 Subject End: 172 .....................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... .....................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttgagtacggtaaggcgaagctgacgtggtttgaatttgatttttgaagagtat.......................................................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_0280_SP_0281|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258312,258528]|217 HSP 1 e-value: 4.0E-43 bit: 176.0 Len: 105 Query Start:21 Query End:125 Subject Strand: POSITIVE Subject Start: 10 Subject End: 114 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... ....................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_1472_SP_1473|oxidoreductase, putative:hypothetical protein|POSITIVE:NEGATIVE|[1386055,1386276]|222 HSP 1 e-value: 2.0E-42 bit: 174.0 Len: 108 Query Start:20 Query End:127 Subject Strand: POSITIVE Subject Start: 115 Subject End: 222 ...................tatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ ...................tatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctgtacttaagtacggcaaggtgaagctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ Subject: NC_003028_SP_0292_SP_0293|bifunctional folate synthesis protein:hypothetical protein|POSITIVE:NEGATIVE|[271230,271378]|149 HSP 1 e-value: 2.0E-42 bit: 174.0 Len: 104 Query Start:22 Query End:125 Subject Strand: NEGATIVE Subject Start: 47 Subject End: 149 .....................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... .....................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... Subject: NC_008533_SPD_0714_SPD_0715|hypothetical protein:MutT/nudix family protein|NEGATIVE:NEGATIVE|[729726,729889]|164 HSP 1 e-value: 3.0E-41 bit: 170.0 Len: 106 Query Start:19 Query End:124 Subject Strand: POSITIVE Subject Start: 59 Subject End: 164 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctatacttgagtacggtaaggcgacgcttacgtgatttgaattttattttcgaagagta........................................................................................................................................................................................................................................................................................................... Subject: NC_003098_spr0720_spr0721|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[722195,722358]|164 HSP 1 e-value: 3.0E-41 bit: 170.0 Len: 106 Query Start:19 Query End:124 Subject Strand: POSITIVE Subject Start: 59 Subject End: 164 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctatacttgagtacggtaaggcgacgcttacgtgatttgaattttattttcgaagagta........................................................................................................................................................................................................................................................................................................... Subject: NC_008533_SPD_1551_SPD_1552|prevent-host-death family protein:hypothetical protein|NEGATIVE:NEGATIVE|[1574500,1574730]|231 HSP 1 e-value: 1.0E-40 bit: 168.0 Len: 109 Query Start:19 Query End:127 Subject Strand: POSITIVE Subject Start: 85 Subject End: 193 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ ..................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcgatttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ Subject: NC_008533_SPD_0546_SPD_0547|branched-chain amino acid transport system II carrier protein:hypothetical protein|POSITIVE:POSITIVE|[559539,559741]|203 HSP 1 e-value: 1.0E-40 bit: 168.0 Len: 109 Query Start:19 Query End:127 Subject Strand: NEGATIVE Subject Start: 5 Subject End: 113 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ ..................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacgacaaggcgacgttgacgcggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ Subject: NC_003098_spr1586_spr1587|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1567002,1567199]|198 HSP 1 e-value: 1.0E-40 bit: 168.0 Len: 109 Query Start:19 Query End:127 Subject Strand: POSITIVE Subject Start: 52 Subject End: 160 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ ..................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcgatttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ Subject: NC_003098_spr0551_spr0552|Branched-chain amino acid transport system carrier protein:hypothetical protein|POSITIVE:POSITIVE|[552009,552211]|203 HSP 1 e-value: 1.0E-40 bit: 168.0 Len: 109 Query Start:19 Query End:127 Subject Strand: NEGATIVE Subject Start: 5 Subject End: 113 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ ..................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacgacaaggcgacgttgacgcggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ Subject: NC_003028_SP_1741_SP_1742|hypothetical protein:hypothetical protein|NEGATIVE:NEGATIVE|[1645558,1645794]|237 HSP 1 e-value: 1.0E-40 bit: 168.0 Len: 109 Query Start:19 Query End:127 Subject Strand: POSITIVE Subject Start: 91 Subject End: 199 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ ..................ttatactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgcgatttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ Subject: NC_008533_SPD_0260_SPD_0261|ribosomal small subunit pseudouridine synthase A:aminopeptidase C|POSITIVE:POSITIVE|[258814,259029]|216 HSP 1 e-value: 1.0E-33 bit: 145.0 Len: 105 Query Start:21 Query End:125 Subject Strand: POSITIVE Subject Start: 10 Subject End: 113 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... ....................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctgtacttgagtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_1306_SP_1307|glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1233949,1234453]|505 HSP 1 e-value: 9.0E-32 bit: 139.0 Len: 110 Query Start:19 Query End:128 Subject Strand: POSITIVE Subject Start: 218 Subject End: 326 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... ..................ttatactcaatgaaaatcaaagagcaaactaggaagcgagccgcaggctgtacttgagtacggtaaagcaaagctgacgtggtttgaa-gagattttcaaagagtattaa....................................................................................................................................................................................................................................................................................................... Subject: NC_008533_SPD_0991_SPD_0992|ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1002301,1002645]|345 HSP 1 e-value: 4.0E-31 bit: 137.0 Len: 105 Query Start:21 Query End:125 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 249 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... ....................atactcaatgaaaattaaagtgcaaactaggaagttagccgcaggctgtacttgagtacggcaaggtgaaattgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... Subject: NC_003098_spr1014_spr1015|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[994770,995114]|345 HSP 1 e-value: 4.0E-31 bit: 137.0 Len: 105 Query Start:21 Query End:125 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 249 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... ....................atactcaatgaaaattaaagtgcaaactaggaagttagccgcaggctgtacttgagtacggcaaggtgaaattgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... Subject: NC_008533_SPD_1158_SPD_1159|NADP-specific glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1188350,1188844]|495 HSP 1 e-value: 2.0E-29 bit: 131.0 Len: 110 Query Start:19 Query End:128 Subject Strand: POSITIVE Subject Start: 208 Subject End: 316 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... ..................ttatactcaatgaaaatcaaagagcaaactaggaagcgagtcgcaggctgtacttgagtacggcaaggcaaagctgacgtggtttgaa-gagattttcaaagagtattaa....................................................................................................................................................................................................................................................................................................... Subject: NC_003098_spr1181_spr1182|glutamate dehydrogenase:hypothetical protein|POSITIVE:NEGATIVE|[1180819,1181313]|495 HSP 1 e-value: 2.0E-29 bit: 131.0 Len: 110 Query Start:19 Query End:128 Subject Strand: POSITIVE Subject Start: 208 Subject End: 316 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... ..................ttatactcaatgaaaatcaaagagcaaactaggaagcgagtcgcaggctgtacttgagtacggcaaggcaaagctgacgtggtttgaa-gagattttcaaagagtattaa....................................................................................................................................................................................................................................................................................................... Subject: NC_008533_SPD_0710_SPD_0711|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[727105,727897]|793 HSP 1 e-value: 9.0E-29 bit: 129.0 Len: 105 Query Start:21 Query End:125 Subject Strand: NEGATIVE Subject Start: 135 Subject End: 238 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... ....................atactaaatgaaaatcaaaaagcaaactaagaagctagcctcaggctgtacttgagtacggtaaggcgacgctgacgtgatttgaa-gagattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_1107_SP_1108|50S ribosomal protein L27:hypothetical protein|POSITIVE:NEGATIVE|[1038201,1038545]|345 HSP 1 e-value: 9.0E-29 bit: 129.0 Len: 105 Query Start:21 Query End:125 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 249 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... ....................atactcaatgaaaattaaagtgcaaactaggaagttagccgcaggctgtacttgagtacggcaaggtgaaattgacatggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_0807_SP_0809|septation ring formation regulator EzrA:hypothetical protein|POSITIVE:POSITIVE|[764244,764778]|535 HSP 1 e-value: 9.0E-29 bit: 129.0 Len: 105 Query Start:21 Query End:125 Subject Strand: NEGATIVE Subject Start: 135 Subject End: 238 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... ....................atactaaatgaaaatcaaaaagcaaactaagaagctagcctcaggctgtacttgagtacggtaaggcgacgctgacgtgatttgaa-aagattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_1696_SP_1697|hypothetical protein:ATP-dependent DNA helicase RecG|NEGATIVE:NEGATIVE|[1600719,1600952]|234 HSP 1 e-value: 8.0E-23 bit: 109.0 Len: 63 Query Start:1 Query End:63 Subject Strand: NEGATIVE Subject Start: 172 Subject End: 234 gctttctctaaggaaatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ gctttctctaaggaaaacttatactcaatgaaaatcaaagagcaaactaggaagctaaccgca........................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 5.0E-15 bit: 83.8 Len: 66 Query Start:77 Query End:142 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 65 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaagctagctttcaggt......................................................................................................................................................................................................................................................................................... ............................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtattaagctagtttttaggt......................................................................................................................................................................................................................................................................................... Subject: NC_008533_SPD_0569_SPD_0570|sodium/hydrogen exchanger family protein:ribonuclease BN, putative|POSITIVE:POSITIVE|[591916,592093]|178 HSP 1 e-value: 8.0E-20 bit: 99.6 Len: 54 Query Start:15 Query End:68 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 159 ..............aatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg................................................................................................................................................................................................................................................................................................................................................................... ..............aatcttatactcaatgaaaatcaaagagcaaactagaaagctagccgcaagctg................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-11 bit: 71.9 Len: 52 Query Start:77 Query End:128 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 51 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... ............................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... Subject: NC_003098_spr0573_spr0574|Na+/H+ antiporter:hypothetical protein|POSITIVE:POSITIVE|[584385,584547]|163 HSP 1 e-value: 8.0E-20 bit: 99.6 Len: 54 Query Start:15 Query End:68 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 159 ..............aatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg................................................................................................................................................................................................................................................................................................................................................................... ..............aatcttatactcaatgaaaatcaaagagcaaactagaaagctagccgcaagctg................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-11 bit: 71.9 Len: 52 Query Start:77 Query End:128 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 51 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... ............................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_0655_SP_0657|sodium/hydrogen exchanger family protein:ribonuclease BN, putative|POSITIVE:POSITIVE|[627719,627896]|178 HSP 1 e-value: 8.0E-20 bit: 99.6 Len: 54 Query Start:15 Query End:68 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 159 ..............aatcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg................................................................................................................................................................................................................................................................................................................................................................... ..............aatcttatactcaatgaaaatcaaagagcaaactagaaagctagccgcaagctg................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-11 bit: 71.9 Len: 52 Query Start:77 Query End:128 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 51 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... ............................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... Subject: NC_008533_SPD_1193_SPD_1194|peptide methionine sulfoxide reductase msrA/msrB 1:homoserine kinase|NEGATIVE:NEGATIVE|[1222081,1222375]|295 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 50 Query Start:19 Query End:68 Subject Strand: NEGATIVE Subject Start: 180 Subject End: 229 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg................................................................................................................................................................................................................................................................................................................................................................... ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 51 Query Start:77 Query End:127 Subject Strand: NEGATIVE Subject Start: 30 Subject End: 79 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ ............................................................................tacggtaaggtgacgctgacgtggtttgaa-gagattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ Subject: NC_003098_spr1217_spr1218|bifunctional methionine sulfoxide reductase A/B protein:homoserine kinase|NEGATIVE:NEGATIVE|[1214550,1214844]|295 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 50 Query Start:19 Query End:68 Subject Strand: NEGATIVE Subject Start: 180 Subject End: 229 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg................................................................................................................................................................................................................................................................................................................................................................... ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 51 Query Start:77 Query End:127 Subject Strand: NEGATIVE Subject Start: 30 Subject End: 79 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ ............................................................................tacggtaaggtgacgctgacgtggtttgaa-gagattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ Subject: NC_003028_SP_1359_SP_1360|bifunctional methionine sulfoxide reductase A/B protein:homoserine kinase|NEGATIVE:NEGATIVE|[1281932,1282225]|294 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 50 Query Start:19 Query End:68 Subject Strand: NEGATIVE Subject Start: 179 Subject End: 228 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg................................................................................................................................................................................................................................................................................................................................................................... ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-8 bit: 61.9 Len: 51 Query Start:77 Query End:127 Subject Strand: NEGATIVE Subject Start: 30 Subject End: 79 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ ............................................................................tacggtaaggtgacgctgacgtggtttgaa-gagattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ Subject: NC_003098_spr1924_spr1925|aspartyl-tRNA synthetase:hypothetical protein|NEGATIVE:NEGATIVE|[1908629,1908979]|351 HSP 1 e-value: 7.0E-17 bit: 89.7 Len: 45 Query Start:19 Query End:63 Subject Strand: NEGATIVE Subject Start: 275 Subject End: 319 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 7.0E-11 bit: 69.9 Len: 51 Query Start:77 Query End:127 Subject Strand: NEGATIVE Subject Start: 120 Subject End: 169 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ ............................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ Subject: NC_003098_spr0696_spr0697|methionine--tRNA ligase:hypothetical protein|POSITIVE:POSITIVE|[698465,698791]|327 HSP 1 e-value: 7.0E-17 bit: 89.7 Len: 45 Query Start:19 Query End:63 Subject Strand: POSITIVE Subject Start: 41 Subject End: 85 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 52 Query Start:77 Query End:128 Subject Strand: POSITIVE Subject Start: 191 Subject End: 241 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... ............................................................................tacggtagggcgacgatgacgtggtttgaa-gagattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_2114_SP_2115|aspartyl-tRNA synthetase:hypothetical protein|NEGATIVE:NEGATIVE|[2029292,2029642]|351 HSP 1 e-value: 7.0E-17 bit: 89.7 Len: 45 Query Start:19 Query End:63 Subject Strand: NEGATIVE Subject Start: 275 Subject End: 319 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 7.0E-11 bit: 69.9 Len: 51 Query Start:77 Query End:127 Subject Strand: NEGATIVE Subject Start: 120 Subject End: 169 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ ............................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ Subject: NC_003028_SP_0788_SP_0789|methionine--tRNA ligase:hypothetical protein|POSITIVE:POSITIVE|[743783,744247]|465 HSP 1 e-value: 7.0E-17 bit: 89.7 Len: 45 Query Start:19 Query End:63 Subject Strand: POSITIVE Subject Start: 41 Subject End: 85 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 4.0E-9 bit: 63.9 Len: 52 Query Start:77 Query End:128 Subject Strand: POSITIVE Subject Start: 326 Subject End: 376 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... ............................................................................tacggtagggcgacgctgacgtggtttgaa-gagattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_0041_SP_0042|bacteriocin BlpU:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[40102,40815]|714 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 52 Query Start:77 Query End:128 Subject Strand: NEGATIVE Subject Start: 542 Subject End: 593 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... ............................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-12 bit: 73.8 Len: 41 Query Start:21 Query End:61 Subject Strand: NEGATIVE Subject Start: 655 Subject End: 695 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccg.......................................................................................................................................................................................................................................................................................................................................................................... ....................atactcaatgaaaatcaaagagcaaactaggaaactagccg.......................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_008533_SPD_0790_SPD_0791|pyruvate kinase:hypothetical protein|POSITIVE:NEGATIVE|[809280,810395]|1116 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 43 Query Start:21 Query End:63 Subject Strand: NEGATIVE Subject Start: 209 Subject End: 251 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-9 bit: 65.9 Len: 49 Query Start:77 Query End:125 Subject Strand: NEGATIVE Subject Start: 102 Subject End: 149 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... ............................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... Subject: NC_008533_SPD_0549_SPD_0550|lipoprotein, putative:ribosomal protein L11|POSITIVE:POSITIVE|[561971,562278]|308 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 47 Query Start:22 Query End:68 Subject Strand: NEGATIVE Subject Start: 137 Subject End: 183 .....................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg................................................................................................................................................................................................................................................................................................................................................................... .....................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 45 Query Start:80 Query End:124 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 44 ...............................................................................ggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... ...............................................................................ggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta........................................................................................................................................................................................................................................................................................................... Subject: NC_003098_spr1081_spr1082|hypothetical protein:GTP-binding protein LepA|NEGATIVE:NEGATIVE|[1076753,1077368]|616 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 43 Query Start:21 Query End:63 Subject Strand: POSITIVE Subject Start: 377 Subject End: 419 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 45 Query Start:81 Query End:125 Subject Strand: POSITIVE Subject Start: 484 Subject End: 527 ................................................................................gtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... ................................................................................gtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... Subject: NC_003098_spr0797_spr0798|pyruvate kinase:hypothetical protein|POSITIVE:NEGATIVE|[801749,802864]|1116 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 43 Query Start:21 Query End:63 Subject Strand: NEGATIVE Subject Start: 209 Subject End: 251 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-9 bit: 65.9 Len: 49 Query Start:77 Query End:125 Subject Strand: NEGATIVE Subject Start: 102 Subject End: 149 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... ............................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... Subject: NC_003098_spr0554_spr0555|hypothetical protein:50S ribosomal protein L11|POSITIVE:POSITIVE|[554441,554748]|308 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 47 Query Start:22 Query End:68 Subject Strand: NEGATIVE Subject Start: 137 Subject End: 183 .....................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg................................................................................................................................................................................................................................................................................................................................................................... .....................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 45 Query Start:80 Query End:124 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 44 ...............................................................................ggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... ...............................................................................ggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta........................................................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_1717_SP_1718|ABC transporter, ATP-binding protein:hypothetical protein|NEGATIVE:NEGATIVE|[1621815,1622204]|390 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 43 Query Start:19 Query End:61 Subject Strand: POSITIVE Subject Start: 114 Subject End: 156 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccg.......................................................................................................................................................................................................................................................................................................................................................................... ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccg.......................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 51 Query Start:77 Query End:127 Subject Strand: POSITIVE Subject Start: 264 Subject End: 313 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ ............................................................................tacggcaaggcgaagctgacgtggtttgaa-gagattttcgaagagtatta........................................................................................................................................................................................................................................................................................................ Subject: NC_003028_SP_1199_SP_1200|hypothetical protein:GTP-binding protein LepA|NEGATIVE:NEGATIVE|[1132042,1132583]|542 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 43 Query Start:21 Query End:63 Subject Strand: POSITIVE Subject Start: 260 Subject End: 302 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-9 bit: 65.9 Len: 49 Query Start:77 Query End:125 Subject Strand: POSITIVE Subject Start: 406 Subject End: 453 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... ............................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_0897_SP_0899|pyruvate kinase:hypothetical protein|POSITIVE:POSITIVE|[852843,854645]|1803 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 43 Query Start:21 Query End:63 Subject Strand: NEGATIVE Subject Start: 205 Subject End: 247 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-9 bit: 65.9 Len: 49 Query Start:77 Query End:125 Subject Strand: NEGATIVE Subject Start: 98 Subject End: 145 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... ............................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_0629_SP_0630|hypothetical protein:50S ribosomal protein L11|POSITIVE:POSITIVE|[596487,596794]|308 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 47 Query Start:22 Query End:68 Subject Strand: NEGATIVE Subject Start: 137 Subject End: 183 .....................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg................................................................................................................................................................................................................................................................................................................................................................... .....................tactcaatgaaaatcaaagagcaaactaggaagctagccgcaggctg................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 45 Query Start:80 Query End:124 Subject Strand: NEGATIVE Subject Start: 1 Subject End: 44 ...............................................................................ggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... ...............................................................................ggtaaggcgacgctgacgtggtttgaa-gagattttcgaagagta........................................................................................................................................................................................................................................................................................................... Subject: NC_008533_SPD_1492_SPD_1493|hypothetical protein:sugar ABC transporter, permease protein|NEGATIVE:NEGATIVE|[1508518,1508789]|272 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 105 Query Start:20 Query End:124 Subject Strand: POSITIVE Subject Start: 168 Subject End: 272 ...................tatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... ...................tatactcaatgaaaattgaagaacaaactaggaagctaaccgcaggcaatacttaagtatggcaaggtgaagctgacgtagtttgcattcgattttcgcagagta........................................................................................................................................................................................................................................................................................................... Subject: NC_008533_SPD_0089_SPD_0090|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[89674,89930]|257 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 53 Query Start:16 Query End:68 Subject Strand: NEGATIVE Subject Start: 159 Subject End: 211 ...............atcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg................................................................................................................................................................................................................................................................................................................................................................... ...............atcttatactcaatgaaaatcaaagagcaaactagaaaactagccgcaggctg................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 7.0E-14 bit: 79.8 Len: 52 Query Start:77 Query End:128 Subject Strand: NEGATIVE Subject Start: 51 Subject End: 102 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... ............................................................................tacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... Subject: NC_008533_SPD_0047_SPD_0049|hypothetical protein:competence factor transporting ATP-binding/permease protein ComA|POSITIVE:POSITIVE|[39873,41901]|2029 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 49 Query Start:77 Query End:125 Subject Strand: NEGATIVE Subject Start: 1860 Subject End: 1908 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... ............................................................................tacggcaaggcgacgttgacgtggtttgaatttgattttcgaagagtat.......................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 7.0E-14 bit: 79.8 Len: 48 Query Start:21 Query End:68 Subject Strand: NEGATIVE Subject Start: 1963 Subject End: 2010 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg................................................................................................................................................................................................................................................................................................................................................................... ....................atactcaatgaaaatcaaagagcaaactaggaaactagccgcaggctg................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_003098_spr1922_spr1923|Maltose operon transcriptional repressor:hypothetical protein|POSITIVE:NEGATIVE|[1905655,1905945]|291 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 45 Query Start:19 Query End:63 Subject Strand: POSITIVE Subject Start: 133 Subject End: 177 ..................ttatactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ ..................ttatactcaatgaaaatcaaagtgcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 4.0E-9 bit: 63.9 Len: 52 Query Start:77 Query End:128 Subject Strand: POSITIVE Subject Start: 238 Subject End: 288 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... ............................................................................tacggtaaggcgacgctgacgtggtttgaa-gagattttcgaaaagtattaa....................................................................................................................................................................................................................................................................................................... Subject: NC_003098_spr1524_spr1525|hypothetical protein:ABC transporter membrane-spanning permease - sugar transport|NEGATIVE:NEGATIVE|[1500987,1501258]|272 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 105 Query Start:20 Query End:124 Subject Strand: POSITIVE Subject Start: 168 Subject End: 272 ...................tatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctgtacttgagtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... ...................tatactcaatgaaaattgaagaacaaactaggaagctaaccgcaggcaatacttaagtatggcaaggtgaagctgacgtagtttgcattcgattttcgcagagta........................................................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_0091_SP_0092|ABC transporter, permease protein:ABC transporter, substrate-binding protein|POSITIVE:POSITIVE|[94866,95122]|257 HSP 1 e-value: 7.0E-14 bit: 79.8 Len: 52 Query Start:77 Query End:128 Subject Strand: NEGATIVE Subject Start: 51 Subject End: 102 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... ............................................................................tacggcaaggcgacgttgacgcggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 4.0E-12 bit: 73.8 Len: 53 Query Start:16 Query End:68 Subject Strand: NEGATIVE Subject Start: 159 Subject End: 211 ...............atcttatactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg................................................................................................................................................................................................................................................................................................................................................................... ...............atcttatactcaataaaaatcaaagagcaaactagaaaactagccgcaggctg................................................................................................................................................................................................................................................................................................................................................................... Subject: NC_008533_SPD_1408_SPD_1409|hypothetical protein:sugar ABC transporter, ATP-binding protein|NEGATIVE:NEGATIVE|[1427612,1428111]|500 HSP 1 e-value: 2.0E-11 bit: 71.9 Len: 48 Query Start:21 Query End:68 Subject Strand: POSITIVE Subject Start: 201 Subject End: 248 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg................................................................................................................................................................................................................................................................................................................................................................... ....................atactcaatggaaatcaaagagcaaactaggaaactagccgtaagctg................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 53 Query Start:76 Query End:128 Subject Strand: POSITIVE Subject Start: 303 Subject End: 354 ...........................................................................gtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... ...........................................................................gtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... Subject: NC_003098_spr1436_spr1437|hypothetical protein:ABC transporter ATP-binding protein - multiple sugar transport|NEGATIVE:NEGATIVE|[1420081,1420580]|500 HSP 1 e-value: 2.0E-11 bit: 71.9 Len: 48 Query Start:21 Query End:68 Subject Strand: POSITIVE Subject Start: 201 Subject End: 248 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg................................................................................................................................................................................................................................................................................................................................................................... ....................atactcaatggaaatcaaagagcaaactaggaaactagccgtaagctg................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 53 Query Start:76 Query End:128 Subject Strand: POSITIVE Subject Start: 303 Subject End: 354 ...........................................................................gtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... ...........................................................................gtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_1579_SP_1580|hypothetical protein:sugar ABC transporter, ATP-binding protein|NEGATIVE:NEGATIVE|[1484730,1485134]|405 HSP 1 e-value: 2.0E-11 bit: 71.9 Len: 48 Query Start:21 Query End:68 Subject Strand: POSITIVE Subject Start: 106 Subject End: 153 ....................atactcaatgaaaatcaaagagcaaactaggaagctagccgcaagctg................................................................................................................................................................................................................................................................................................................................................................... ....................atactcaatggaaatcaaagagcaaactaggaaactagccgtaagctg................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 53 Query Start:76 Query End:128 Subject Strand: POSITIVE Subject Start: 208 Subject End: 259 ...........................................................................gtacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... ...........................................................................gtacggcaaggcgacgttgacgtggtttgaa-gagattttcgaagagtattaa....................................................................................................................................................................................................................................................................................................... Subject: NC_003028_SP_1516_SP_1517|acetyltransferase, GNAT family:transcription elongation factor GreA|NEGATIVE:NEGATIVE|[1424331,1424807]|477 HSP 1 e-value: 2.0E-11 bit: 71.9 Len: 48 Query Start:16 Query End:63 Subject Strand: POSITIVE Subject Start: 86 Subject End: 133 ...............atcttatactcaatgaaaatcaaagagcaaactaggaagctagccgca........................................................................................................................................................................................................................................................................................................................................................................ ...............atctaatactcaataaaaatcaaagagcaaactaggaaactagccgca........................................................................................................................................................................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 48 Query Start:77 Query End:124 Subject Strand: POSITIVE Subject Start: 374 Subject End: 420 ............................................................................tacggtaaggcgacgctgacgtggtttgaatttgattttcgaagagta........................................................................................................................................................................................................................................................................................................... ............................................................................tacggcaaggcgacgctgacgtggtttgaa-gagattttcgaagagta........................................................................................................................................................................................................................................................................................................... Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GCUUUCUCUAAGGAAAUCUUAUACUCAAUGAAAAUCAAAGAGCAAACUAGGAAGCUAGCCGCAAGCUGUACUUGAGUACGGUAAGGCGACGCUGACGUGGUUUGAAUUUGAUUUUCGAAGAGUAUUAAGCUAGCUUUCAGGUUUGCCCUUUAUACUAGAGUCAUCAAAAAGAAACGAGGACUCUCAUAUGACAGUAACGAUUAAAGUAAAUUACCAAACCACUUUCCAGAAGAAAGAAGCAACAAAAUAAUAUAAAUAGAAGGAAGAAAGAGCGAAAUGCUCUUUUUUCGUUUCUAAAACUACUUUCAGCCCAUCAUCCUAAAAGUAAAGAAUCUAAAAUCUCUUUCUAUUUACCCUUCUUUCUUGCAUUGCUUUUCUAGAUAUGCUAGAGUGGUGGUAGCGAUUACAAAAAAGGAGCAUGCU ((...((((..(((((.(((((((((..(((((((((((...((((((((..(((..(((....(((((((....)))))))..)))...)))..).)))))))..)))))))))))..))))).))))..........((((((....(((((..((((((.((..........)).))))))..))))).....((.......)).......))))))..)))))..((((((((((.................(((((((((((((((((.....))))))))))).))))))....((((((.((.........)).))))))............................))))))))))((((..((.((((((.....)))))).))..)).))............))))...)). (-117.90) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGCAUGCUCCUUUUUUGUAAUCGCUACCACCACUCUAGCAUAUCUAGAAAAGCAAUGCAAGAAAGAAGGGUAAAUAGAAAGAGAUUUUAGAUUCUUUACUUUUAGGAUGAUGGGCUGAAAGUAGUUUUAGAAACGAAAAAAGAGCAUUUCGCUCUUUCUUCCUUCUAUUUAUAUUAUUUUGUUGCUUCUUUCUUCUGGAAAGUGGUUUGGUAAUUUACUUUAAUCGUUACUGUCAUAUGAGAGUCCUCGUUUCUUUUUGAUGACUCUAGUAUAAAGGGCAAACCUGAAAGCUAGCUUAAUACUCUUCGAAAAUCAAAUUCAAACCACGUCAGCGUCGCCUUACCGUACUCAAGUACAGCUUGCGGCUAGCUUCCUAGUUUGCUCUUUGAUUUUCAUUGAGUAUAAGAUUUCCUUAGAGAAAGC .((.(((.(((((...((((....((((((((((........(((((((.......((((.((((....((((((((((.....(((((((....((((((((((.........)))))))))).)))))))..(((.(((((((.....))))))).))).))))))))))....)))).)))).......))))))).))))))..))))..))))................((((.((((((.(((........))).)))))).))))))))))))...((((.......((((.(((((...((((((((((..(((((...(..((((((((....(.((((....)))).)...)))))..)))..)..)))))...))))))))))...)))))))))......)))).....)) (-108.76) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1028 100 51 196 147 smit:SMT_1963|5end_ribonuclease_BN,_putative_1896462..1896692_NEGATIVE 1028 100 51 183 134 smit:SMT_483|5end_transcriptional_activator_TipA,_putative_418827..419057_POSITIVE 948 100 51 231 182 smit:SMT_1810|5end_hypothetical_protein_1785219..1785449_POSITIVE 933 90 41 187 138 smit:SMT_1602|5end_hypothetical_protein_1592385..1592615_POSITIVE 933 90 41 199 150 smit:SMT_1488|5end_K06147_ATP-binding_cassette,_subfamily_B,_bacterial_1467157..1467387_POSITIVE 933 90 41 212 163 smit:SMT_833|5end_hypothetical_protein_predicted_by_Glimmer/Critica_775362..775592_NEGATIVE 933 90 41 196 147 smit:SMT_130|5end_capsular_polysaccharide_biosynthesis_protein_80995..81225_POSITIVE 842 80 31 225 176 smit:SMT_1138|5end_hypothetical_protein_1079547..1079777_NEGATIVE 817 80 31 228 179 smit:SMT_1179|5end_aldose_1-epimerase_1137854..1138084_NEGATIVE 815 80 31 174 125 smit:SMT_1782|5end_hypothetical_protein_1759520..1759750_POSITIVE 808 120 73 48 1 smit:SMT_2109|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1999099..1999329_NEGATIVE 754 68 21 162 115 smit:SMT_366|5end_hypothetical_protein_302085..302315_POSITIVE 753 67 21 221 172 smit:SMT_1379|5end_thymidylate_kinase_1357438..1357668_NEGATIVE 752 68 21 152 105 smit:SMT_1200|5end_K06148_ATP-binding_cassette,_subfamily_C,_bacterial_1163235..1163465_NEGATIVE 666 66 24 231 189 smit:SMT_443|5end_hydroxyethylthiazole_kinase_382555..382785_POSITIVE 659 67 21 196 148 smit:SMT_150|5end_K02030_polar_amino_acid_transport_system_substrate-binding_protein_98787..99017_POSITIVE 618 130 81 89 42 smit:SMT_958|5end_hypothetical_protein_predicted_by_Glimmer/Critica_905052..905282_POSITIVE 618 67 21 161 112 smit:SMT_163|5end_cardiolipin_synthetase_107309..107539_POSITIVE 573 55 17 231 193 smit:SMT_2108|5end_adenylosuccinate_lyase_1998851..1999081_NEGATIVE 570 67 21 173 124 smit:SMT_1544|5end_mevalonate_kinase_1528884..1529114_NEGATIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1082 100 51 67 18 smit:SMT_915|3end_sucrose_operon_repressor_868619..868769_POSITIVE 1053 100 51 62 13 smit:SMT_1536|3end_trigger_factor_1520636..1520786_NEGATIVE 1028 100 51 62 13 smit:SMT_1964|3end_sodium/hydrogen_exchanger_family_protein_1896596..1896746_NEGATIVE 1000 100 51 66 17 smit:SMT_1140|3end_glycogen_phosphorylase_1081316..1081466_NEGATIVE 978 110 61 53 4 smit:SMT_1671|3end_hypothetical_protein_1659392..1659542_NEGATIVE 971 100 51 67 18 smit:SMT_1477|3end_K02077_zinc/manganese_transport_system_substrate-binding_protein_1459447..1459597_NEGATIVE 953 100 51 59 10 smit:SMT_1766|3end_sucrose-6-phosphate_hydrolase_1743101..1743251_POSITIVE 948 100 51 66 17 smit:SMT_1809|3end_MutT/NUDIX_family_protein_1785134..1785284_POSITIVE 933 90 41 57 8 smit:SMT_834|3end_hypothetical_protein_775517..775667_NEGATIVE 914 100 51 66 17 smit:SMT_698|3end_uracil_permease_609769..609919_POSITIVE 882 89 41 55 7 smit:SMT_2109|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1999061..1999211_NEGATIVE 882 89 41 55 7 smit:SMT_1180|3end_putative_tagatose-6-phosphate_aldose/ketose_isomerase_1138036..1138186_NEGATIVE 867 100 51 64 15 smit:SMT_799|3end_hypothetical_protein_707296..707446_NEGATIVE 819 100 53 48 1 smit:SMT_1487|3end_hypothetical_protein_1467076..1467226_POSITIVE 787 100 51 66 17 smit:SMT_890|3end_K02029_polar_amino_acid_transport_system_permease_protein_837692..837842_POSITIVE 765 120 71 50 1 smit:SMT_442|3end_transcriptional_regulator,_putative_382400..382550_POSITIVE 711 127 81 93 47 smit:SMT_913|3end_putative_sucrose-specific_PTS_permease,_enzyme_II_863923..864073_NEGATIVE 707 128 81 68 22 smit:SMT_1815|3end_K02035_peptide/nickel_transport_system_substrate-binding_protein_1788899..1789049_NEGATIVE 659 67 21 114 66 smit:SMT_149|3end_hypothetical_protein_predicted_by_Glimmer/Critica_98785..98935_POSITIVE 635 129 81 89 42 smit:SMT_124|3end_hypothetical_protein_75590..75740_NEGATIVE