Origin IGS: aaaagataataatccttcctatttgcttaatttcattataaaatttttagttcaaaatagcaagttaaaggaataaaaaattctttatggtaataataagaaaaaaaagttcaaaatacaataaaaacaattggctaattaaaatatatatgttagaataaaaataaggaaacagaaaggggtttcagtgcaagagaaaaaaacgcggaattaaaaaattagctatattagcattactaggtgtttttacgtttagtaatacaattccttaccaacagtttattcagaagaataaacaattggagattcgagtgcaatcacaaaagaagtccaattgtcttgatgttgggaaggcagattagtaagtttatcctaataattaagactttcatgtttttttgcagttaagaaattttagtaatgccagacgtgtctaatacctagaatacgattaggaacgaaaataactgaccagtattttatatttattagtgttattaactatgttctagtttctttgctgttgttactggaattaaaaaaacttaatgtgccaaataaagttaatattttattggcgagtcttatttttttagggaatagcttaacgattttatacatgatgttataatttagatgaggtgttaac .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gttaacacctcatctaaattataacatcatgtataaaatcgttaagctattccctaaaaaaataagactcgccaataaaatattaactttatttggcacattaagtttttttaattccagtaacaacagcaaagaaactagaacatagttaataacactaataaatataaaatactggtcagttattttcgttcctaatcgtattctaggtattagacacgtctggcattactaaaatttcttaactgcaaaaaaacatgaaagtcttaattattaggataaacttactaatctgccttcccaacatcaagacaattggacttcttttgtgattgcactcgaatctccaattgtttattcttctgaataaactgttggtaaggaattgtattactaaacgtaaaaacacctagtaatgctaatatagctaattttttaattccgcgtttttttctcttgcactgaaacccctttctgtttccttatttttattctaacatatatattttaattagccaattgtttttattgtattttgaacttttttttcttattattaccataaagaattttttattcctttaacttgctattttgaactaaaaattttataatgaaattaagcaaataggaaggattattatctttt Mask Tandem Repeat Region ================================================ aaaagataataatccttcctatttgcttaatttcattataaaatttttagttcaaaatagcaagttaaaggaataaaaaattctttatggtaataataagaaaaaaaagttcaaaatacaataaaaacaattggctaattaaaatatatatgttagaataaaaataaggaaacagaaaggggtttcagtgcaagagaaaaaaacgcggaattaaaaaattagctatattagcattactaggtgtttttacgtttagtaatacaattccttaccaacagtttattcagaagaataaacaattggagattcgagtgcaatcacaaaagaagtccaattgtcttgatgttgggaaggcagattagtaagtttatcctaataattaagactttcatgtttttttgcagttaagaaattttagtaatgccagacgtgtctaatacctagaatacgattaggaacgaaaataactgaccagtattttatatttattagtgttattaactatgttctagtttctttgctgttgttactggaattaaaaaaacttaatgtgccaaataaagttaatattttattggcgagtcttatttttttagggaatagcttaacgattttatacatgatgttataatttagatgaggtgttaac Find is-nt database================================================ Query_seq: SMT_1050:SMT_1051|SMT_1050:SMT_1051:transcriptional regulator PlcR, putative:K01990 ABC-2 type transport system ATP-binding protein:<-->:990471..991119 649 aaaagataataatccttcctatttgcttaatttcattataaaatttttagttcaaaatagcaagttaaaggaataaaaaattctttatggtaataataagaaaaaaaagttcaaaatacaataaaaacaattggctaattaaaatatatatgttagaataaaaataaggaaacagaaaggggtttcagtgcaagagaaaaaaacgcggaattaaaaaattagctatattagcattactaggtgtttttacgtttagtaatacaattccttaccaacagtttattcagaagaataaacaattggagattcgagtgcaatcacaaaagaagtccaattgtcttgatgttgggaaggcagattagtaagtttatcctaataattaagactttcatgtttttttgcagttaagaaattttagtaatgccagacgtgtctaatacctagaatacgattaggaacgaaaataactgaccagtattttatatttattagtgttattaactatgttctagtttctttgctgttgttactggaattaaaaaaacttaatgtgccaaataaagttaatattttattggcgagtcttatttttttagggaatagcttaacgattttatacatgatgttataatttagatgaggtgttaac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: SMT_1050:SMT_1051|SMT_1050:SMT_1051:transcriptional regulator PlcR, putative:K01990 ABC-2 type transport system ATP-binding protein:<-->:990471..991119 649 aaaagataataatccttcctatttgcttaatttcattataaaatttttagttcaaaatagcaagttaaaggaataaaaaattctttatggtaataataagaaaaaaaagttcaaaatacaataaaaacaattggctaattaaaatatatatgttagaataaaaataaggaaacagaaaggggtttcagtgcaagagaaaaaaacgcggaattaaaaaattagctatattagcattactaggtgtttttacgtttagtaatacaattccttaccaacagtttattcagaagaataaacaattggagattcgagtgcaatcacaaaagaagtccaattgtcttgatgttgggaaggcagattagtaagtttatcctaataattaagactttcatgtttttttgcagttaagaaattttagtaatgccagacgtgtctaatacctagaatacgattaggaacgaaaataactgaccagtattttatatttattagtgttattaactatgttctagtttctttgctgttgttactggaattaaaaaaacttaatgtgccaaataaagttaatattttattggcgagtcttatttttttagggaatagcttaacgattttatacatgatgttataatttagatgaggtgttaac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: SMT_1050:SMT_1051|SMT_1050:SMT_1051:transcriptional regulator PlcR, putative:K01990 ABC-2 type transport system ATP-binding protein:<-->:990471..991119 649 aaaagataataatccttcctatttgcttaatttcattataaaatttttagttcaaaatagcaagttaaaggaataaaaaattctttatggtaataataagaaaaaaaagttcaaaatacaataaaaacaattggctaattaaaatatatatgttagaataaaaataaggaaacagaaaggggtttcagtgcaagagaaaaaaacgcggaattaaaaaattagctatattagcattactaggtgtttttacgtttagtaatacaattccttaccaacagtttattcagaagaataaacaattggagattcgagtgcaatcacaaaagaagtccaattgtcttgatgttgggaaggcagattagtaagtttatcctaataattaagactttcatgtttttttgcagttaagaaattttagtaatgccagacgtgtctaatacctagaatacgattaggaacgaaaataactgaccagtattttatatttattagtgttattaactatgttctagtttctttgctgttgttactggaattaaaaaaacttaatgtgccaaataaagttaatattttattggcgagtcttatttttttagggaatagcttaacgattttatacatgatgttataatttagatgaggtgttaac Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 195 Max: 359 Len: 165 Subject: UniRef90_Q97NS0 Cluster: Hypothetical protein; n=3; Streptococcus pneumoniae|Rep: Hypothetical protein - Streptococcus pneumoniae HSP 1 e-value: 2.0E-19 bit: 98.2 Len: 165 Query Start:195 Query End:359 Subject Strand: null Subject Start: 2 Subject End: 56 .................................................................................................................................................................................................. R K K R G I K K L A I L A L L G V F T F S N T I P Y Q Q F I Q K N K Q L E I R V Q S Q K K S N C L D V G K A D .................................................................................................................................................................................................................................................................................................. .................................................................................................................................................................................................. R K K R G I K K L V T F A L L G V F M F S N T I P Y Q Q F I Q K N K Q L E I R V Q S Q K K S N G L D V G K A D .................................................................................................................................................................................................................................................................................................. aaaagataataatccttcctatttgcttaatttcattataaaatttttagttcaaaatagcaagttaaaggaataaaaaattctttatggtaataataagaaaaaaaagttcaaaatacaataaaaacaattggctaattaaaatatatatgttagaataaaaataaggaaacagaaaggggtttcagtgcaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtaagtttatcctaataattaagactttcatgtttttttgcagttaagaaattttagtaatgccagacgtgtctaatacctagaatacgattaggaacgaaaataactgaccagtattttatatttattagtgttattaactatgttctagtttctttgctgttgttactggaattaaaaaaacttaatgtgccaaataaagttaatattttattggcgagtcttatttttttagggaatagcttaacgattttatacatgatgttataatttagatgaggtgttaac Predict ORF larger than 30AA ================================================ Protein_Len: 50 Strand: + Start: 210 End: 359 ................................................................................................................................................................................................................. M K K L A I L A L L G V F T F S N T I P Y Q Q F I Q K N K Q L E I R V Q S Q K K S N C L D V G K A D .................................................................................................................................................................................................................................................................................................. Protein_Len: 55 Strand: + Start: 241 End: 405 ................................................................................................................................................................................................................................................ M F L R L V I Q F L T N S L F R R I N N W R F E C N H K R S P I V L M L G R Q I S K F I L I I K T F M F F C S .................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 437 End: 628 .................................................................................................................................................................................................................................................................................................................................................................................................................................................... M P R I R L G T K I T D Q Y F I F I S V I N Y V L V S L L L L L E L K K L N V P N K V N I L L A S L I F L G N S L T I L ..................... Protein_Len: 40 Strand: - Start: 505 End: 624 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ T R T E K S N N S S N F F S L T G F L T L I K N A L R I K K P F L K V I K Y M M ......................... Protein_Len: 36 Strand: - Start: 68 End: 175 ................................................................... L F L F N K I T I I L F F L E F Y L L F L Q S I L I Y I N S Y F Y P F M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... aaaagataataatccttcctatttgcttaatttcattataaaatttttagttcaaaatagcaagttaaaggaataaaaaattctttatggtaataataagaaaaaaaagttcaaaatacaataaaaacaattggctaattaaaatatatatgttagaataaaaataaggaaacagaaaggggtttcagtgcaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtaagtttatcctaataattaagactttcatgtttttttgcagttaagaaattttagtaatgccagacgtgtctaatacctagaatacgattaggaacgaaaataactgaccagtattttatatttattagtgttattaactatgttctagtttctttgctgttgttactggaattaaaaaaacttaatgtgccaaataaagttaatattttattggcgagtcttatttttttagggaatagcttaacgattttatacatgatgttataatttagatgaggtgttaac Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 87 Start: 35 End: 64 ..................................CTTGCTATTTTGAACTAAAAATTTTATAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 86 Start: 130 End: 159 .................................................................................................................................ATTGGCTAATTAAAATATATATGTTAGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 84 Start: 93 End: 122 ............................................................................................ATTGTATTTTGAACTTTTTTTTCTTATTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 15 End: 44 ..............CTTCCTATTTGCTTAATTTCATTATAAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aaaagataataatccttcctatttgcttaatttcattataaaatttttagttcaaaatagcaagttaaaggaataaaaaattctttatggtaataataagaaaaaaaagttcaaaatacaataaaaacaattggctaattaaaatatatatgttagaataaaaataaggaaacagaaaggggtttcagtgcaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtaagtttatcctaataattaagactttcatgtttttttgcagttaagaaattttagtaatgccagacgtgtctaatacctagaatacgattaggaacgaaaataactgaccagtattttatatttattagtgttattaactatgttctagtttctttgctgttgttactggaattaaaaaaacttaatgtgccaaataaagttaatattttattggcgagtcttatttttttagggaatagcttaacgattttatacatgatgttataatttagatgaggtgttaac Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 70 HP_score: -8.0 Tail_Score: -3.13899 Start: 278 End: 297 Full_Region: ctcgaatctccaatt gtttattc ttct gaataaac tgttggtaaggaatt .....................................................................................................................................................................................................................................................................................gtttattcttctgaataaac................................................................................................................................................................................................................................................................................................................................................................ Find igs database================================================ Query_seq: SMT_1050:SMT_1051|SMT_1050:SMT_1051:transcriptional regulator PlcR, putative:K01990 ABC-2 type transport system ATP-binding protein:<-->:990471..991119 649 aaaagataataatccttcctatttgcttaatttcattataaaatttttagttcaaaatagcaagttaaaggaataaaaaattctttatggtaataataagaaaaaaaagttcaaaatacaataaaaacaattggctaattaaaatatatatgttagaataaaaataaggaaacagaaaggggtttcagtgcaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagtaagtttatcctaataattaagactttcatgtttttttgcagttaagaaattttagtaatgccagacgtgtctaatacctagaatacgattaggaacgaaaataactgaccagtattttatatttattagtgttattaactatgttctagtttctttgctgttgttactggaattaaaaaaacttaatgtgccaaataaagttaatattttattggcgagtcttatttttttagggaatagcttaacgattttatacatgatgttataatttagatgaggtgttaac Intra-Species Hit: Count: 1 Min: 1 Max: 649 Len: 649 Subject: smit_SMT_1050_SMT_1051|transcriptional regulator PlcR, putative:K01990 ABC-2 type transport system ATP-binding protein|NEGATIVE:POSITIVE|[990471,991119]|649 HSP 1 e-value: 1.0E-125 bit: 450.0 Len: 290 Query Start:360 Query End:649 Subject Strand: POSITIVE Subject Start: 360 Subject End: 649 .......................................................................................................................................................................................................................................................................................................................................................................tagtaagtttatcctaataattaagactttcatgnnnnnnngcagttaagaaattttagtaatgccagacgtgtctaatacctagaatacgattaggaacgaaaataactgaccagtattttatatttattagtgttattaactatgttctagtttctttgctgttgttactggaattnnnnnnncttaatgtgccaaataaagttaatattttattggcgagtcttannnnnnnagggaatagcttaacgattttatacatgatgttataatttagatgaggtgttaac .......................................................................................................................................................................................................................................................................................................................................................................tagtaagtttatcctaataattaagactttcatgtttttttgcagttaagaaattttagtaatgccagacgtgtctaatacctagaatacgattaggaacgaaaataactgaccagtattttatatttattagtgttattaactatgttctagtttctttgctgttgttactggaattaaaaaaacttaatgtgccaaataaagttaatattttattggcgagtcttatttttttagggaatagcttaacgattttatacatgatgttataatttagatgaggtgttaac HSP 2 e-value: 2.0E-49 bit: 198.0 Len: 100 Query Start:1 Query End:100 Subject Strand: POSITIVE Subject Start: 1 Subject End: 100 aaaagataataatccttcctatttgcttaatttcattataaaatttttagttcaaaatagcaagttaaaggaataaaaaattctttatggtaataataag..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... aaaagataataatccttcctatttgcttaatttcattataaaatttttagttcaaaatagcaagttaaaggaataaaaaattctttatggtaataataag..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAAAGAUAAUAAUCCUUCCUAUUUGCUUAAUUUCAUUAUAAAAUUUUUAGUUCAAAAUAGCAAGUUAAAGGAAUAAAAAAUUCUUUAUGGUAAUAAUAAGAAAAAAAAGUUCAAAAUACAAUAAAAACAAUUGGCUAAUUAAAAUAUAUAUGUUAGAAUAAAAAUAAGGAAACAGAAAGGGGUUUCAGUGCAAGAGAAAAAAACGCGGAAUUAAAAAAUUAGCUAUAUUAGCAUUACUAGGUGUUUUUACGUUUAGUAAUACAAUUCCUUACCAACAGUUUAUUCAGAAGAAUAAACAAUUGGAGAUUCGAGUGCAAUCACAAAAGAAGUCCAAUUGUCUUGAUGUUGGGAAGGCAGAUUAGUAAGUUUAUCCUAAUAAUUAAGACUUUCAUGUUUUUUUGCAGUUAAGAAAUUUUAGUAAUGCCAGACGUGUCUAAUACCUAGAAUACGAUUAGGAACGAAAAUAACUGACCAGUAUUUUAUAUUUAUUAGUGUUAUUAACUAUGUUCUAGUUUCUUUGCUGUUGUUACUGGAAUUAAAAAAACUUAAUGUGCCAAAUAAAGUUAAUAUUUUAUUGGCGAGUCUUAUUUUUUUAGGGAAUAGCUUAACGAUUUUAUACAUGAUGUUAUAAUUUAGAUGAGGUGUUAAC .........((((((((.(((..(...((((.(((((((((((((((((((....(((((((((....((((((.....))))))(((((((((((((..((.(((..((((..................(((((..((((((((...(((......)))....(((((((((((((..((..(((..((((...(((........((((((.........((((...)))).((((((..(((....)))..))))))...))))))...((((..((((((((....))))))))..))))...)))...)))).........)))..))....(((((((((((((((((((..........)))).))))))).)))))))).))).))))))))))..........))))))))...))))).((((((((.....))).))))).....)))).((((((.((....))))))))...))).))..))))))).))))))..........)))))))))...)))))).(((((((((.......((((((.((((((....)))))))))))).......))))))))).............))))))))).)))).))))..)..)))..)))).)))).. (-135.64) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GUUAACACCUCAUCUAAAUUAUAACAUCAUGUAUAAAAUCGUUAAGCUAUUCCCUAAAAAAAUAAGACUCGCCAAUAAAAUAUUAACUUUAUUUGGCACAUUAAGUUUUUUUAAUUCCAGUAACAACAGCAAAGAAACUAGAACAUAGUUAAUAACACUAAUAAAUAUAAAAUACUGGUCAGUUAUUUUCGUUCCUAAUCGUAUUCUAGGUAUUAGACACGUCUGGCAUUACUAAAAUUUCUUAACUGCAAAAAAACAUGAAAGUCUUAAUUAUUAGGAUAAACUUACUAAUCUGCCUUCCCAACAUCAAGACAAUUGGACUUCUUUUGUGAUUGCACUCGAAUCUCCAAUUGUUUAUUCUUCUGAAUAAACUGUUGGUAAGGAAUUGUAUUACUAAACGUAAAAACACCUAGUAAUGCUAAUAUAGCUAAUUUUUUAAUUCCGCGUUUUUUUCUCUUGCACUGAAACCCCUUUCUGUUUCCUUAUUUUUAUUCUAACAUAUAUAUUUUAAUUAGCCAAUUGUUUUUAUUGUAUUUUGAACUUUUUUUUCUUAUUAUUACCAUAAAGAAUUUUUUAUUCCUUUAACUUGCUAUUUUGAACUAAAAAUUUUAUAAUGAAAUUAAGCAAAUAGGAAGGAUUAUUAUCUUUU ..........................(((....(((((..((((.(((((..(((((.....(((((((.(((((((((........)))).))))).......((((((((((((..(((((...((((.....(((((.....))))).......((((((....((.(((((.(((.((..((....))..)).)))))))).))..))))))....).)))...)))))..))))..........)))))))).....)))))))....))))).................((((.((((((....((((((((((.(((....(((....)))..)))..))))))))))(((((....)))))...)))))).))))....(((((((((...((....))...)))))))))....))))))))).))))).....(((...........)))..)))....(((((((((((.((((.(((((((.(((.((.(.((.(((((.((((.....((((..(......)..)))).....................((((((((.....))).)))))....))))..))))).)).).)).))).))))))).)))).)))))))))))............. (-111.70) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 641 60 11 151 102 smit:SMT_1050|5end_transcriptional_regulator_PlcR,_putative_990380..990610_NEGATIVE 272 450 403 82 39 smit:SMT_1922|5end_exonuclease_RexA_1865998..1866228_NEGATIVE 272 450 403 82 39 smit:SMT_1484|5end_exonuclease_RexA_1464936..1465166_NEGATIVE 262 320 271 200 146 smit:SMT_676|5end_DNA_helicase_II_585266..585496_NEGATIVE 256 358 313 105 71 smit:SMT_1959|5end_hypothetical_protein_predicted_by_Glimmer/Critica_1892585..1892815_POSITIVE 254 444 402 230 182 smit:SMT_650|5end_pullulanase_559832..560062_NEGATIVE 249 210 161 200 154 smit:SMT_1308|5end_hypothetical_protein_1272596..1272826_POSITIVE 247 374 331 65 18 smit:SMT_384|5end_hypothetical_protein_319406..319636_POSITIVE 246 358 313 223 175 smit:SMT_1930|5end_peptide_chain_release_factor_1_1870765..1870995_NEGATIVE 246 477 436 214 174 smit:SMT_125|5end_hypothetical_protein_77664..77894_NEGATIVE 244 358 314 124 83 smit:SMT_1023|5end_hypothetical_protein_958884..959114_NEGATIVE 242 453 411 88 47 smit:SMT_1416|5end_hypothetical_protein_1400829..1401059_NEGATIVE 239 280 232 224 186 smit:SMT_2039|5end_malolactic_enzyme_1950427..1950657_NEGATIVE 238 208 168 49 8 smit:SMT_859|5end_K02086_DNA_replication_protein_804058..804288_NEGATIVE 237 206 167 178 137 smit:SMT_993|5end_hypothetical_protein_935476..935706_NEGATIVE 237 209 164 69 26 smit:SMT_399|5end_cytochrome_c-type_biogenesis_protein_CcdA_328366..328596_POSITIVE 236 340 303 47 10 smit:SMT_1453|5end_K07335_basic_membrane_protein_A_and_related_proteins_1437407..1437637_NEGATIVE 235 360 329 198 162 smit:SMT_1147|5end_hypothetical_protein_1092144..1092374_NEGATIVE 233 625 581 158 112 smit:SMT_1095|5end_ribosomal_large_subunit_pseudouridine_synthase,_RluD_subfamily_1036373..1036603_POSITIVE 232 538 505 42 6 smit:SMT_2091|5end_hypothetical_protein_1986235..1986465_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 254 444 402 76 28 smit:SMT_651|3end_DNA_ligase_559986..560136_NEGATIVE 252 536 500 138 106 smit:SMT_1473|3end_hypothetical_protein_1455119..1455269_POSITIVE 244 358 314 47 6 smit:SMT_1024|3end_transcriptional_regulator,_MarR_family_958961..959111_NEGATIVE 242 453 411 91 50 smit:SMT_1417|3end_spermidine_synthase_1400826..1400976_NEGATIVE 238 207 167 138 98 smit:SMT_1971|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1903526..1903676_POSITIVE 234 425 383 144 100 smit:SMT_1358|3end_dihydroorotate_dehydrogenase_B_1336254..1336404_NEGATIVE 232 66 21 122 78 smit:SMT_841|3end_dihydrodipicolinate_reductase_787258..787408_NEGATIVE 229 214 174 49 2 smit:SMT_860|3end_homoserine_O-succinyltransferase_804067..804217_NEGATIVE 227 280 234 146 96 smit:SMT_1284|3end_predicted_amidophosphoribosyltransferase_1247704..1247854_POSITIVE 227 360 325 47 11 smit:SMT_228|3end_hypothetical_protein_165093..165243_POSITIVE 227 360 325 47 11 smit:SMT_224|3end_hypothetical_protein_159599..159749_POSITIVE 226 202 167 63 25 smit:SMT_2030|3end_chromosomal_replication_initiator_protein_DnaA_1944790..1944940_NEGATIVE 226 247 203 81 37 smit:SMT_1897|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1848766..1848916_NEGATIVE 226 206 166 55 14 smit:SMT_934|3end_pyridine_nucleotide-disulfide_oxidoreductase_887307..887457_POSITIVE 225 360 328 144 114 smit:SMT_1957|3end_hypothetical_protein_predicted_by_Glimmer/Critica_1890829..1890979_POSITIVE 225 359 319 67 30 smit:SMT_605|3end_DNA-binding_protein_HU_519257..519407_POSITIVE 224 533 492 135 96 smit:SMT_1892|3end_hypothetical_protein_1846193..1846343_POSITIVE 223 456 411 146 100 smit:SMT_2021|3end_K06201_copper_homeostasis_protein_1938294..1938444_POSITIVE 223 369 325 86 34 smit:SMT_1618|3end_K02015_iron_complex_transport_system_permease_protein_1604490..1604640_NEGATIVE 222 532 502 148 115 smit:SMT_1994|3end_phosphoglycerate_mutase_1920058..1920208_NEGATIVE