Origin IGS: taacttatttcatagacgaaaagaaagtaataaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaaatatagcattcatcttgtttcatattccaacacaatgatacaagaaaaaatttggttattaaacttaaaataagtaactttgccataatcattaactgcatttgactt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aagtcaaatgcagttaatgattatggcaaagttacttattttaagtttaataaccaaattttttcttgtatcattgtgttggaatatgaaacaagatgaatgctatatttttgtaaagataattctgttaaaaactgataactgcgctttgacgttgcgaaagcggctcttttacgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgtaatacgttgatgattagatagttaagcaatagatatatgtgcgaaaaatatttacacatttattactttcttttcgtctatgaaataagtta Mask Tandem Repeat Region ================================================ taacttatttcatagacgaaaagaaagtaataaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaaatatagcattcatcttgtttcatattccaacacaatgatacaagaaaaaatttggttattaaacttaaaataagtaactttgccataatcattaactgcatttgactt Find is-nt database================================================ Query_seq: PI2172:PI2174|PI2172:PI2174:hypothetical protein:hypothetical protein:->->:2114052..2114384 333 taacttatttcatagacgaaaagaaagtaataaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaaatatagcattcatcttgtttcatattccaacacaatgatacaagaaaaaatttggttattaaacttaaaataagtaactttgccataatcattaactgcatttgactt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI2172:PI2174|PI2172:PI2174:hypothetical protein:hypothetical protein:->->:2114052..2114384 333 taacttatttcatagacgaaaagaaagtaataaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaaatatagcattcatcttgtttcatattccaacacaatgatacaagaaaaaatttggttattaaacttaaaataagtaactttgccataatcattaactgcatttgactt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI2172:PI2174|PI2172:PI2174:hypothetical protein:hypothetical protein:->->:2114052..2114384 333 taacttatttcatagacgaaaagaaagtaataaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaaatatagcattcatcttgtttcatattccaacacaatgatacaagaaaaaatttggttattaaacttaaaataagtaactttgccataatcattaactgcatttgactt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taacttatttcatagacgaaaagaaagtaataaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaaatatagcattcatcttgtttcatattccaacacaatgatacaagaaaaaatttggttattaaacttaaaataagtaactttgccataatcattaactgcatttgactt Predict ORF larger than 30AA ================================================ Protein_Len: 42 Strand: + Start: 34 End: 159 ................................. M C K Y F S H I Y L L L N Y L I I N V L Q N L L F C V P K A A L L H G K S V G F A S .............................................................................................................................................................................. Protein_Len: 48 Strand: + Start: 152 End: 295 ....................................................................................................................................................... M H R K R A A F A T S K R S Y Q F L T E L S L Q K Y S I H L V S Y S N T M I Q E K I W L L N L K ...................................... Protein_Len: 30 Strand: - Start: 103 End: 192 ...................................................................................................... Q K A N W F R S K Q V T F A Y T K C R L L A A K A V D F R M ............................................................................................................................................. Protein_Len: 60 Strand: - Start: 75 End: 326 .......................................................................... P K A D Y F L R K R L T L A C N D T K L L I I K V F I Y C E D Q K M N W C L S V L F F K T I L S L I L L K A M I M L Q M ....... taacttatttcatagacgaaaagaaagtaataaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaaatatagcattcatcttgtttcatattccaacacaatgatacaagaaaaaatttggttattaaacttaaaataagtaactttgccataatcattaactgcatttgactt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 260 End: 289 ...................................................................................................................................................................................................................................................................GTTTAATAACCAAATTTTTTCTTGTATCAT............................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taacttatttcatagacgaaaagaaagtaataaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaaatatagcattcatcttgtttcatattccaacacaatgatacaagaaaaaatttggttattaaacttaaaataagtaactttgccataatcattaactgcatttgactt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 93 HP_score: -11.2 Tail_Score: -3.54424 Start: 121 End: 171 Full_Region: TTTTGCGTTCCAAAA GCGGCTCTTTTGCACGGTAAAAGC GTA GGTTTTGCATCGTAAAAGAGCCGC TTTCGCAACGTCAAA ........................................................................................................................GCGGCTCTTTTGCACGGTAAAAGCGTAGGTTTTGCATCGTAAAAGAGCCGC.................................................................................................................................................................. TransTerm Strand: - Conf: 83 HP_score: -9.0 Tail_Score: -4.07568 Start: 121 End: 171 Full_Region: tttgacgttgcgaaa gcggctcttttacgatgcaaaacc tac gcttttaccgtgcaaaagagccgc ttttggaacgcaaaa ........................................................................................................................gcggctcttttacgatgcaaaacctacgcttttaccgtgcaaaagagccgc.................................................................................................................................................................. Find igs database================================================ Query_seq: PI2172:PI2174|PI2172:PI2174:hypothetical protein:hypothetical protein:->->:2114052..2114384 333 taacttatttcatagacgaaaagaaagtaataaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaaatatagcattcatcttgtttcatattccaacacaatgatacaagaaaaaatttggttattaaacttaaaataagtaactttgccataatcattaactgcatttgactt Intra-Species Hit: Count: 56 Min: 1 Max: 333 Len: 333 Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 0.0 bit: 660.0 Len: 333 Query Start:1 Query End:333 Subject Strand: POSITIVE Subject Start: 1 Subject End: 333 taacttatttcatagacgaaaagaaagtaataaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaaatatagcattcatcttgtttcatattccaacacaatgatacaagaaaaaatttggttattaaacttaaaataagtaactttgccataatcattaactgcatttgactt taacttatttcatagacgaaaagaaagtaataaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaaatatagcattcatcttgtttcatattccaacacaatgatacaagaaaaaatttggttattaaacttaaaataagtaactttgccataatcattaactgcatttgactt Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 5.0E-82 bit: 305.0 Len: 210 Query Start:16 Query End:225 Subject Strand: NEGATIVE Subject Start: 111 Subject End: 320 ...............acgaaaagaaagtaataaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ ...............acgaaaagaaggtaataaaggtgtaaatatttttcgtaaagataattattacttaactatctaaccatcaacgcattataaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 5.0E-73 bit: 276.0 Len: 207 Query Start:19 Query End:225 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 256 ..................aaaagaaagtaataaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ ..................aaaagaagctaataaaagtgtaaatatttttcacaagcttacctattacgtaactatctaaccatcagcgtattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaacggaattatctttacaaaa............................................................................................................ Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 4.0E-61 bit: 236.0 Len: 195 Query Start:30 Query End:224 Subject Strand: NEGATIVE Subject Start: 200 Subject End: 394 .............................ataaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaa............................................................................................................. .............................ataaaggtgtaaatatttttcgcaagttcaactgttgcttaactctctaatcatcagagagttataaaacctattgttttgcgttccaaaaacggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaacggaattatctttacaaa............................................................................................................. Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 4.0E-61 bit: 236.0 Len: 167 Query Start:58 Query End:224 Subject Strand: NEGATIVE Subject Start: 60 Subject End: 226 .........................................................tatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaa............................................................................................................. .........................................................tatctattgtttaactctttaattatcaatgtgttacaaaacctattgttttgcattctaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttgtcactttttaacagaattatctttacaaa............................................................................................................. Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 2.0E-57 bit: 224.0 Len: 145 Query Start:82 Query End:226 Subject Strand: POSITIVE Subject Start: 139 Subject End: 283 .................................................................................atcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaaa........................................................................................................... .................................................................................atcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaaa........................................................................................................... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 6.0E-57 bit: 222.0 Len: 132 Query Start:94 Query End:225 Subject Strand: POSITIVE Subject Start: 96 Subject End: 227 .............................................................................................caaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ .............................................................................................caaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 2.0E-56 bit: 220.0 Len: 139 Query Start:87 Query End:225 Subject Strand: POSITIVE Subject Start: 90 Subject End: 228 ......................................................................................cgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ ......................................................................................cgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 2.0E-56 bit: 220.0 Len: 143 Query Start:82 Query End:224 Subject Strand: NEGATIVE Subject Start: 480 Subject End: 622 .................................................................................atcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaa............................................................................................................. .................................................................................atcaacgcattacaaaacctattgttttgcattccaaaagcggctgttttgcatggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacagaattatctttacaaa............................................................................................................. Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 9.0E-56 bit: 218.0 Len: 134 Query Start:91 Query End:224 Subject Strand: NEGATIVE Subject Start: 149 Subject End: 282 ..........................................................................................ttacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaa............................................................................................................. ..........................................................................................ttacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcggttatcactttttaacggaattatctttacaaa............................................................................................................. Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 9.0E-56 bit: 218.0 Len: 210 Query Start:16 Query End:225 Subject Strand: NEGATIVE Subject Start: 166 Subject End: 375 ...............acgaaaagaaagtaataaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ ...............acgaaaagaaggtaataaagatgtaaatatttttcacagataaaactatcgcttaaccatttggcattcagcgcattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaacagccgctttcgcaatgtcaaaacgcagttatcaatttttaagagaattatctttacaaaa............................................................................................................ Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 6.0E-54 bit: 212.0 Len: 143 Query Start:83 Query End:225 Subject Strand: NEGATIVE Subject Start: 146 Subject End: 288 ..................................................................................tcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ ..................................................................................tcaatgtattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcattttttaagagaattatctttacaaaa............................................................................................................ Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 6.0E-54 bit: 212.0 Len: 143 Query Start:82 Query End:224 Subject Strand: NEGATIVE Subject Start: 310 Subject End: 452 .................................................................................atcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaa............................................................................................................. .................................................................................atcaacgcattacaagacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaaagaaattatctttacaaa............................................................................................................. Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 6.0E-54 bit: 212.0 Len: 159 Query Start:65 Query End:223 Subject Strand: NEGATIVE Subject Start: 170 Subject End: 328 ................................................................tgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaa.............................................................................................................. ................................................................tgcttaaccacctaaccatcagcgcattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaatgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacggaattatctttacaa.............................................................................................................. Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 6.0E-54 bit: 212.0 Len: 191 Query Start:36 Query End:226 Subject Strand: NEGATIVE Subject Start: 184 Subject End: 374 ...................................gtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaaa........................................................................................................... ...................................gtgtaaatatttttcacaacaatacctatcgcataacaaactaatcatcaacgccttacaaaacctattgtttcgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcacaaaagagccgctttcgcaacgccaaagcgcagttatcaatttttaagagaattatctttacaaaaa........................................................................................................... Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 6.0E-54 bit: 212.0 Len: 195 Query Start:31 Query End:225 Subject Strand: POSITIVE Subject Start: 241 Subject End: 435 ..............................taaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ ..............................taaaggtgtaaatatttttcacacgagtatctattatgtaactaactgtgcatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa............................................................................................................ Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 9.0E-53 bit: 208.0 Len: 137 Query Start:88 Query End:224 Subject Strand: NEGATIVE Subject Start: 215 Subject End: 351 .......................................................................................gtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaa............................................................................................................. .......................................................................................gtattacaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcatcgtcaaaacgcagttatcactttttaagagaataatctttacaaa............................................................................................................. Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 4.0E-52 bit: 206.0 Len: 136 Query Start:90 Query End:225 Subject Strand: POSITIVE Subject Start: 692 Subject End: 827 .........................................................................................attacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ .........................................................................................attacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaa............................................................................................................ Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 9.0E-50 bit: 198.0 Len: 148 Query Start:77 Query End:224 Subject Strand: POSITIVE Subject Start: 237 Subject End: 384 ............................................................................taatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaa............................................................................................................. ............................................................................taatcatcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa............................................................................................................. Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 9.0E-50 bit: 198.0 Len: 132 Query Start:94 Query End:225 Subject Strand: NEGATIVE Subject Start: 114 Subject End: 245 .............................................................................................caaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ .............................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacgctaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcgctttttaacagaataatctttacaaaa............................................................................................................ Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 2.0E-47 bit: 190.0 Len: 144 Query Start:82 Query End:225 Subject Strand: NEGATIVE Subject Start: 113 Subject End: 256 .................................................................................atcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ .................................................................................atcaacgcattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaatcgaaattaccatttttcaaagaaattatctttacaaaa............................................................................................................ Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 2.0E-47 bit: 190.0 Len: 144 Query Start:82 Query End:225 Subject Strand: POSITIVE Subject Start: 98 Subject End: 241 .................................................................................atcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ .................................................................................atcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaa............................................................................................................ Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 1.0E-45 bit: 184.0 Len: 125 Query Start:82 Query End:206 Subject Strand: NEGATIVE Subject Start: 120 Subject End: 244 .................................................................................atcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaa............................................................................................................................... .................................................................................atcaacgcattgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaa............................................................................................................................... Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 2.0E-44 bit: 180.0 Len: 143 Query Start:82 Query End:224 Subject Strand: POSITIVE Subject Start: 374 Subject End: 516 .................................................................................atcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaa............................................................................................................. .................................................................................atcaacgcattacaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaacagccgctttcgcaatgccaaatcgaaattatcatttttcatcagaattatctttacaaa............................................................................................................. Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 2.0E-44 bit: 180.0 Len: 135 Query Start:91 Query End:225 Subject Strand: POSITIVE Subject Start: 37 Subject End: 171 ..........................................................................................ttacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ ..........................................................................................ttacaaaacctattgttttgcattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgtaaaagagccgctttcgcaacgtcaaaacgaaattattgtttttcatcagaattatctttacaaaa............................................................................................................ Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 8.0E-44 bit: 178.0 Len: 150 Query Start:37 Query End:186 Subject Strand: NEGATIVE Subject Start: 108 Subject End: 257 ....................................tgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaa................................................................................................................................................... ....................................tgtaaatatttttcgcaaacatagctattgcgtaactgctttatcatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaacgtcaaa................................................................................................................................................... Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 3.0E-43 bit: 176.0 Len: 137 Query Start:88 Query End:224 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 393 .......................................................................................gtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaa............................................................................................................. .......................................................................................gtattgcaaaacctacgcttttgcgttccaaaagcggctgttttgtacggtaaaagcgtaggttttgcatcgcaaaagaaccgctttcgcaacgttaaagcgcagttatcactttttaacggaattatatttacaaa............................................................................................................. Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 3.0E-40 bit: 167.0 Len: 136 Query Start:90 Query End:225 Subject Strand: NEGATIVE Subject Start: 141 Subject End: 276 .........................................................................................attacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ .........................................................................................attataaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaagagaattatctttacaaaa............................................................................................................ Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 105 Query Start:82 Query End:186 Subject Strand: POSITIVE Subject Start: 75 Subject End: 179 .................................................................................atcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaa................................................................................................................................................... .................................................................................atcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaa................................................................................................................................................... Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 7.0E-38 bit: 159.0 Len: 144 Query Start:82 Query End:225 Subject Strand: POSITIVE Subject Start: 398 Subject End: 541 .................................................................................atcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ .................................................................................atcaacgtgttacaaaacctattgttttgcattccaaaagcggctgttttgcacggcaaaagcgtaggttttacctcgcaaaacagccgctttcgcaacgtcaaaacgaaattatcaattttcaatgtaattatctttacaaaa............................................................................................................ Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 7.0E-38 bit: 159.0 Len: 144 Query Start:82 Query End:225 Subject Strand: NEGATIVE Subject Start: 10 Subject End: 153 .................................................................................atcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ .................................................................................atcaacgcattacaaaacctattgttttgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccactttcgcaacgtcaaatcgaaattatcatttttcttcggaattatctttacaaaa............................................................................................................ Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 1.0E-36 bit: 155.0 Len: 189 Query Start:37 Query End:225 Subject Strand: NEGATIVE Subject Start: 155 Subject End: 343 ....................................tgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagttt-ttaacagaattatctttacaaaa............................................................................................................ ....................................tgtaaatatttttcacaagtgtgtctattgtgtaactatctcatcaccaatgcattataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagcagctttcgcaacgtcaaatcgaaattatcgttttcttaac-gaattatctttacaaaa............................................................................................................ Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 1.0E-36 bit: 155.0 Len: 142 Query Start:84 Query End:225 Subject Strand: NEGATIVE Subject Start: 201 Subject End: 341 ...................................................................................caacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ ...................................................................................caacgcattacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgcaaac-agccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa............................................................................................................ Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 2.0E-35 bit: 151.0 Len: 136 Query Start:90 Query End:225 Subject Strand: NEGATIVE Subject Start: 191 Subject End: 326 .........................................................................................attacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ .........................................................................................attacaaaatctattgttttgcgtcctaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgtaaaacagccgctttcgcaacgtcaaagtgcagttatcactttttaacgaaattatctttacaaaa............................................................................................................ Subject: pint_PI0694_PI0695|Na+/dicarboxylate or sulfate symporter:xanthine/uracil permease family protein|POSITIVE:POSITIVE|[631238,631552]|315 HSP 1 e-value: 7.0E-35 bit: 149.0 Len: 163 Query Start:16 Query End:178 Subject Strand: NEGATIVE Subject Start: 135 Subject End: 297 ...............acgaaaagaaagtaataaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgca........................................................................................................................................................... ...............acgaaaagcgagtaataaaagtgtaaatatttttcgcaagagtatctttcacttaactctctcactatcaacactttgcaaaacctattgttttgcattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgca........................................................................................................................................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 2.0E-32 bit: 141.0 Len: 143 Query Start:83 Query End:225 Subject Strand: NEGATIVE Subject Start: 91 Subject End: 233 ..................................................................................tcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ ..................................................................................tcaacgtattgcaaaacctattgttttgcactccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgttttcgcaatgtcaaatcgaaattattactttttaaagaaattatctttacaaaa............................................................................................................ Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 1.0E-30 bit: 135.0 Len: 208 Query Start:15 Query End:222 Subject Strand: NEGATIVE Subject Start: 190 Subject End: 397 ..............gacgaaaagaaagtaataaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttaca............................................................................................................... ..............gacgaaaagaaagcaacaaagatgtaaatatttttcacaagggaaactattgcataactatctatacatcaatgtattacaaaacctattgttttgcattccaaaagcgtaggttttacacgataaaagcggctgttttgcgttgcaaaacagccactttcgcaatgtcaaagcgcagttattactttttaacggaattatttttaca............................................................................................................... Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 1.0E-30 bit: 135.0 Len: 144 Query Start:82 Query End:225 Subject Strand: NEGATIVE Subject Start: 215 Subject End: 358 .................................................................................atcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ .................................................................................atcaacgtattgtaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgccaaatcgaaattatcgtttttcagcgaaattatctttacaaaa............................................................................................................ Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 4.0E-30 bit: 133.0 Len: 191 Query Start:34 Query End:224 Subject Strand: POSITIVE Subject Start: 118 Subject End: 308 .................................atgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaa............................................................................................................. .................................atgtgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................. Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 3.0E-28 bit: 127.0 Len: 135 Query Start:91 Query End:225 Subject Strand: POSITIVE Subject Start: 328 Subject End: 462 ..........................................................................................ttacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagttt-ttaacagaattatctttacaaaa............................................................................................................ ..........................................................................................ttacaaaacctattgttttgcatcctaaaagcggctgttttgcacggtaaaagcataggttttgcgttgcaaaagagctgctttcgcaacgtcaaatcgaaattatcgttttcttaac-gaattatctttacaaaa............................................................................................................ Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 6.0E-26 bit: 119.0 Len: 144 Query Start:82 Query End:225 Subject Strand: POSITIVE Subject Start: 334 Subject End: 477 .................................................................................atcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ .................................................................................atcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaa............................................................................................................ Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 3.0E-25 bit: 117.0 Len: 155 Query Start:69 Query End:223 Subject Strand: NEGATIVE Subject Start: 113 Subject End: 267 ....................................................................taactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaa.............................................................................................................. ....................................................................taactacctcatcatcagtgtgttataaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggttgttttgcatcgtaaaacagctgcttttgcaatgtcaaaaggcagttatcactttttaacggaattatttttacaa.............................................................................................................. Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 2.0E-23 bit: 111.0 Len: 136 Query Start:90 Query End:225 Subject Strand: NEGATIVE Subject Start: 79 Subject End: 214 .........................................................................................attacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ .........................................................................................attacaaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcatcgcaaaacagccgctttcgcaatgccaaagcgcaattaccacttttcaacgaaattatctttacaaaa............................................................................................................ Subject: pint_PI1324_PI1325|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1243086,1243554]|469 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 187 Query Start:37 Query End:223 Subject Strand: POSITIVE Subject Start: 204 Subject End: 390 ....................................tgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaa.............................................................................................................. ....................................tgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa.............................................................................................................. Subject: pint_PI1521_PI1522|hypothetical protein:thioredoxin M|POSITIVE:POSITIVE|[1441522,1441785]|264 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 115 Query Start:9 Query End:123 Subject Strand: NEGATIVE Subject Start: 7 Subject End: 121 ........ttcatagacgaaaagaaagtaataaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcg.................................................................................................................................................................................................................. ........ttcacagacgaaaacagggtaataaatctgtaaatatttttcacaagagtaactattgtttaacttgtttattatcaacgtattacaaaacctattgttttgcgttccaaaagcg.................................................................................................................................................................................................................. Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 4.0E-15 bit: 83.8 Len: 210 Query Start:16 Query End:225 Subject Strand: NEGATIVE Subject Start: 144 Subject End: 353 ...............acgaaaagaaagtaataaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ ...............acgaaaagaagataataaaagtgtaaatatttttcacaagcgtaaccattgcataactatctcactatcaagactttgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgtcaaatcgaaattatcattttttcaacgaattatctttacaaaa............................................................................................................ Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 57 Query Start:169 Query End:225 Subject Strand: NEGATIVE Subject Start: 226 Subject End: 282 ........................................................................................................................................................................cgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ ........................................................................................................................................................................cgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatttttacaaaa............................................................................................................ HSP 2 e-value: 8.0E-10 bit: 65.9 Len: 41 Query Start:103 Query End:143 Subject Strand: NEGATIVE Subject Start: 308 Subject End: 348 ......................................................................................................ttgttttgcgttccaaaagcggctcttttgcacggtaaaag.............................................................................................................................................................................................. ......................................................................................................ttgttttgcgttccaaaagcggctgttttgcaaggtaaaag.............................................................................................................................................................................................. Subject: pint_PI1441_PI1442|hypothetical protein:radical-activating enzyme (pyruvate-formate lyase-activating enzyme)|POSITIVE:POSITIVE|[1363734,1364088]|355 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 105 Query Start:82 Query End:186 Subject Strand: POSITIVE Subject Start: 73 Subject End: 177 .................................................................................atcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaa................................................................................................................................................... .................................................................................atcaacgctttacaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgctttcgcaacgtcaaa................................................................................................................................................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 157 Query Start:69 Query End:225 Subject Strand: POSITIVE Subject Start: 165 Subject End: 321 ....................................................................taactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ ....................................................................taactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaa............................................................................................................ Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 6.0E-14 bit: 79.8 Len: 196 Query Start:30 Query End:225 Subject Strand: POSITIVE Subject Start: 109 Subject End: 304 .............................ataaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ .............................ataaaagtgtaaatatttttcacaagtatatccattgcgtaacaagctatctgtcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaa............................................................................................................ Subject: pint_PI1981_PI1982|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1938199,1938578]|380 HSP 1 e-value: 3.0E-12 bit: 73.8 Len: 137 Query Start:89 Query End:225 Subject Strand: NEGATIVE Subject Start: 144 Subject End: 280 ........................................................................................tattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ ........................................................................................tattataaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctgttttgaaatgcaaaacagccgctttcgcaatgtcaaaccgaaattgctgttttttatcagaattatctttacaaaa............................................................................................................ Subject: pint_PI1958_PI1959|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1917430,1917847]|418 HSP 1 e-value: 3.0E-12 bit: 73.8 Len: 137 Query Start:89 Query End:225 Subject Strand: NEGATIVE Subject Start: 182 Subject End: 318 ........................................................................................tattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ ........................................................................................tattataaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctgttttgcaatgcaaaacagccgcttttgcaatgtcaaaccgaaattgctgttttttatcagaattatctttacaaaa............................................................................................................ Subject: pint_PI0854_PI0855|MiaB-like tRNA modifying enzyme:hypothetical protein|POSITIVE:POSITIVE|[788060,789233]|1174 HSP 1 e-value: 3.0E-12 bit: 73.8 Len: 109 Query Start:37 Query End:145 Subject Strand: NEGATIVE Subject Start: 821 Subject End: 929 ....................................tgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcg............................................................................................................................................................................................ ....................................tgtaaatatttttcacagatgcaactatcgcataactttctgtttatcaacatattataaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcg............................................................................................................................................................................................ Subject: pint_PI1102_PI1103|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1026308,1026686]|379 HSP 1 e-value: 1.0E-11 bit: 71.9 Len: 121 Query Start:104 Query End:224 Subject Strand: POSITIVE Subject Start: 55 Subject End: 177 .......................................................................................................tgttttgcgttccaaaagcggctcttttgcacggt--aaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaa............................................................................................................. .......................................................................................................tgttttccgctccaaaagagcctcttttacacggggcaaaagcgtaggtcttgcattgcaaaacagccgctttcgcaagactaaagcgtagttattactttttaagggaattatctttacaaa............................................................................................................. Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 5.0E-11 bit: 69.9 Len: 131 Query Start:95 Query End:225 Subject Strand: POSITIVE Subject Start: 179 Subject End: 309 ..............................................................................................aaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ ..............................................................................................aaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaa............................................................................................................ Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 2.0E-10 bit: 67.9 Len: 138 Query Start:88 Query End:225 Subject Strand: POSITIVE Subject Start: 226 Subject End: 362 .......................................................................................gtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa............................................................................................................ .......................................................................................gtattataaaacctattgttttgcattccaaaagtgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaatgccaaatcgaaattatc-gtttttcaatgaattatctttacaaaa............................................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAACUUAUUUCAUAGACGAAAAGAAAGUAAUAAAUGUGUAAAUAUUUUUCGCACAUAUAUCUAUUGCUUAACUAUCUAAUCAUCAACGUAUUACAAAACCUAUUGUUUUGCGUUCCAAAAGCGGCUCUUUUGCACGGUAAAAGCGUAGGUUUUGCAUCGUAAAAGAGCCGCUUUCGCAACGUCAAAGCGCAGUUAUCAGUUUUUAACAGAAUUAUCUUUACAAAAAUAUAGCAUUCAUCUUGUUUCAUAUUCCAACACAAUGAUACAAGAAAAAAUUUGGUUAUUAAACUUAAAAUAAGUAACUUUGCCAUAAUCAUUAACUGCAUUUGACUU .......((((......))))...((((((((.(((((..((.....))..))))).....))))))))...............((((((..((((......))))..))))))...((((((((((((((((...((((((.(...).))))))...))))))))))))))))......((((((..(((((((...((((((...(((....)))....))))))..........((((((.((((...........)))).)))))).......((((......(((((...)))))......)))).......))))))).)))))).. (-79.00) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAGUCAAAUGCAGUUAAUGAUUAUGGCAAAGUUACUUAUUUUAAGUUUAAUAACCAAAUUUUUUCUUGUAUCAUUGUGUUGGAAUAUGAAACAAGAUGAAUGCUAUAUUUUUGUAAAGAUAAUUCUGUUAAAAACUGAUAACUGCGCUUUGACGUUGCGAAAGCGGCUCUUUUACGAUGCAAAACCUACGCUUUUACCGUGCAAAAGAGCCGCUUUUGGAACGCAAAACAAUAGGUUUUGUAAUACGUUGAUGAUUAGAUAGUUAAGCAAUAGAUAUAUGUGCGAAAAAUAUUUACACAUUUAUUACUUUCUUUUCGUCUAUGAAAUAAGUUA ..((((((((((((((.....(((((((.....(((((...))))).................((((((.((((.((......)))))).))))))....)))))))((((((...(((....)))..))))))....)))))))).))))))(((.(((((((((((((((((((..((.........))......))))..))))))))))))))).)))(((((((.....)))))))....(((.(((((..(((.(((.........((((.(((((..((.....))..))))).))))))).)))..))))).))).......... (-85.30) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 920 178 131 217 170 pint:PI2046|5end_hypothetical_protein_1999030..1999260_POSITIVE 896 150 101 203 154 pint:PI0827|5end_hypothetical_protein_763991..764221_POSITIVE 896 170 121 54 5 pint:PI0638|5end_hypothetical_protein_582218..582448_POSITIVE 874 179 131 66 18 pint:PI0568|5end_hypothetical_protein_512950..513180_POSITIVE 855 179 131 81 33 pint:PI1204|5end_hypothetical_protein_1124430..1124660_POSITIVE 852 190 141 77 28 pint:PI0089|5end_hypothetical_protein_88162..88392_POSITIVE 845 190 141 136 87 pint:PI0867|5end_hypothetical_protein_803859..804089_POSITIVE 845 190 141 53 4 pint:PI0866|5end_hypothetical_protein_803776..804006_POSITIVE 842 150 101 229 180 pint:PI2024|5end_hypothetical_protein_1978804..1979034_POSITIVE 842 150 101 56 7 pint:PI2022|5end_hypothetical_protein_1978631..1978861_POSITIVE 842 150 101 183 134 pint:PI0991|5end_conserved_hypothetical_protein_915309..915539_POSITIVE 826 180 131 126 77 pint:PI0119|5end_hypothetical_protein_111506..111736_POSITIVE 822 150 101 203 154 pint:PI0887|5end_hypothetical_protein_817536..817766_POSITIVE 822 150 101 189 140 pint:PI0024|5end_hypothetical_protein_28378..28608_POSITIVE 817 179 131 212 164 pint:PI1437|5end_hypothetical_protein_1356088..1356318_POSITIVE 817 179 131 85 37 pint:PI1436|5end_hypothetical_protein_1355961..1356191_POSITIVE 816 179 131 177 129 pint:PI1804|5end_hypothetical_protein_1738109..1738339_POSITIVE 816 179 131 64 16 pint:PI1786|5end_hypothetical_protein_1718124..1718354_POSITIVE 813 150 101 216 167 pint:PI1333|5end_conserved_hypothetical_protein_1250777..1251007_POSITIVE 799 198 151 212 166 pint:PI0211|5end_hypothetical_protein_204067..204297_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 936 159 111 147 99 pint:PI0638|3end_hypothetical_protein_582402..582552_POSITIVE 936 159 111 142 94 pint:PI0637|3end_hypothetical_protein_582397..582547_POSITIVE 900 180 131 119 70 pint:PI0819|3end_hypothetical_protein_759919..760069_POSITIVE 874 179 131 91 43 pint:PI0567|3end_hypothetical_protein_513055..513205_POSITIVE 846 159 111 147 99 pint:PI0815|3end_hypothetical_protein_754677..754827_POSITIVE 842 150 101 138 89 pint:PI0568|3end_hypothetical_protein_513131..513281_POSITIVE 838 150 101 150 101 pint:PI1041|3end_hypothetical_protein_960675..960825_POSITIVE 826 159 111 147 99 pint:PI0081|3end_hypothetical_protein_80700..80850_POSITIVE 822 150 101 150 101 pint:PI1797|3end_hypothetical_protein_1731559..1731709_POSITIVE 822 150 101 150 101 pint:PI0885|3end_hypothetical_protein_817563..817713_POSITIVE 822 150 101 150 101 pint:PI0866|3end_hypothetical_protein_803993..804143_POSITIVE 822 150 101 150 101 pint:PI0820|3end_hypothetical_protein_759980..760130_POSITIVE 822 150 101 150 101 pint:PI0118|3end_hypothetical_protein_111640..111790_POSITIVE 822 150 101 138 89 pint:PI0095|3end_hypothetical_protein_91850..92000_POSITIVE 822 150 101 150 101 pint:PI0089|3end_hypothetical_protein_88355..88505_POSITIVE 821 159 111 147 99 pint:PI1252|3end_hypothetical_protein_1175440..1175590_POSITIVE 746 150 101 150 101 pint:PI1005|3end_hypothetical_protein_926481..926631_POSITIVE 717 124 81 151 108 pint:PI0069|3end_hypothetical_protein_67379..67529_POSITIVE 716 159 111 147 99 pint:PI1155|3end_hypothetical_protein_1080352..1080502_POSITIVE 702 198 151 137 90 pint:PI0560|3end_hypothetical_protein_508910..509060_POSITIVE