Origin IGS: taattccaaaaccgactatacggatatgtaaagaagaagaactatgggaaaaagcgacaaaagttaagcggaaacagcatttgcagctataacaagtaagcagccgcttcagaaaataaagaacattctattcttaaaagcaacagacaatctaagaataccataaagactcataaacaaactgcaaaagccactctcaaactttaaaactatttaaaatctctcgccaaatttaacacgagagaaaacaacgaaatagaatcgtgaaacattaaaattagctcttgaaagtccaaaaagcaggaaccatttttcaaaagtgccacttttgcaatgcaaaacctacgcttttaccgtgcaaaacaaccgcttttgaattgctaaagaggcactttcgcctgtcatttttgttccttttatcactttttatgccttacattccacaacaagaagccgttttcatttcacacatatacccacaacagcatcttaacggctgactgacagaacgataaatattgcacgcaaaaagtgcccttatttgcaatcaactttcttgttgtgcgaaaaaactccaatattggcgtgtttcacggctccaaatttaacaattcaaagacgttcgttttattattttaactattaaaaacgtattcttcggcgacacaaccaacaacagctgaaaaagcatatcgaagggaacacaatgtccaaaattgtaaaaggaaacaagttcgcaatagcaatatgtcgaaattgtgctgcataattca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgaattatgcagcacaatttcgacatattgctattgcgaacttgtttccttttacaattttggacattgtgttcccttcgatatgctttttcagctgttgttggttgtgtcgccgaagaatacgtttttaatagttaaaataataaaacgaacgtctttgaattgttaaatttggagccgtgaaacacgccaatattggagttttttcgcacaacaagaaagttgattgcaaataagggcactttttgcgtgcaatatttatcgttctgtcagtcagccgttaagatgctgttgtgggtatatgtgtgaaatgaaaacggcttcttgttgtggaatgtaaggcataaaaagtgataaaaggaacaaaaatgacaggcgaaagtgcctctttagcaattcaaaagcggttgttttgcacggtaaaagcgtaggttttgcattgcaaaagtggcacttttgaaaaatggttcctgctttttggactttcaagagctaattttaatgtttcacgattctatttcgttgttttctctcgtgttaaatttggcgagagattttaaatagttttaaagtttgagagtggcttttgcagtttgtttatgagtctttatggtattcttagattgtctgttgcttttaagaatagaatgttctttattttctgaagcggctgcttacttgttatagctgcaaatgctgtttccgcttaacttttgtcgctttttcccatagttcttcttctttacatatccgtatagtcggttttggaatta Mask Tandem Repeat Region ================================================ taattccaaaaccgactatacggatatgtaaagaagaagaactatgggaaaaagcgacaaaagttaagcggaaacagcatttgcagctataacaagtaagcagccgcttcagaaaataaagaacattctattcttaaaagcaacagacaatctaagaataccataaagactcataaacaaactgcaaaagccactctcaaactttaaaactatttaaaatctctcgccaaatttaacacgagagaaaacaacgaaatagaatcgtgaaacattaaaattagctcttgaaagtccaaaaagcaggaaccatttttcaaaagtgccacttttgcaatgcaaaacctacgcttttaccgtgcaaaacaaccgcttttgaattgctaaagaggcactttcgcctgtcatttttgttccttttatcactttttatgccttacattccacaacaagaagccgttttcatttcacacatatacccacaacagcatcttaacggctgactgacagaacgataaatattgcacgcaaaaagtgcccttatttgcaatcaactttcttgttgtgcgaaaaaactccaatattggcgtgtttcacggctccaaatttaacaattcaaagacgttcgttttattattttaactattaaaaacgtattcttcggcgacacaaccaacaacagctgaaaaagcatatcgaagggaacacaatgtccaaaattgtaaaaggaaacaagttcgcaatagcaatatgtcgaaattgtgctgcataattca Find is-nt database================================================ Query_seq: PI2120:PI2122|PI2120:PI2122:hypothetical protein:conserved hypothetical protein:->->:2069111..2069883 773 taattccaaaaccgactatacggatatgtaaagaagaagaactatgggaaaaagcgacaaaagttaagcggaaacagcatttgcagctataacaagtaagcagccgcttcagaaaataaagaacattctattcttaaaagcaacagacaatctaagaataccataaagactcataaacaaactgcaaaagccactctcaaactttaaaactatttaaaatctctcgccaaatttaacacgagagaaaacaacgaaatagaatcgtgaaacattaaaattagctcttgaaagtccaaaaagcaggaaccatttttcaaaagtgccacttttgcaatgcaaaacctacgcttttaccgtgcaaaacaaccgcttttgaattgctaaagaggcactttcgcctgtcatttttgttccttttatcactttttatgccttacattccacaacaagaagccgttttcatttcacacatatacccacaacagcatcttaacggctgactgacagaacgataaatattgcacgcaaaaagtgcccttatttgcaatcaactttcttgttgtgcgaaaaaactccaatattggcgtgtttcacggctccaaatttaacaattcaaagacgttcgttttattattttaactattaaaaacgtattcttcggcgacacaaccaacaacagctgaaaaagcatatcgaagggaacacaatgtccaaaattgtaaaaggaaacaagttcgcaatagcaatatgtcgaaattgtgctgcataattca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI2120:PI2122|PI2120:PI2122:hypothetical protein:conserved hypothetical protein:->->:2069111..2069883 773 taattccaaaaccgactatacggatatgtaaagaagaagaactatgggaaaaagcgacaaaagttaagcggaaacagcatttgcagctataacaagtaagcagccgcttcagaaaataaagaacattctattcttaaaagcaacagacaatctaagaataccataaagactcataaacaaactgcaaaagccactctcaaactttaaaactatttaaaatctctcgccaaatttaacacgagagaaaacaacgaaatagaatcgtgaaacattaaaattagctcttgaaagtccaaaaagcaggaaccatttttcaaaagtgccacttttgcaatgcaaaacctacgcttttaccgtgcaaaacaaccgcttttgaattgctaaagaggcactttcgcctgtcatttttgttccttttatcactttttatgccttacattccacaacaagaagccgttttcatttcacacatatacccacaacagcatcttaacggctgactgacagaacgataaatattgcacgcaaaaagtgcccttatttgcaatcaactttcttgttgtgcgaaaaaactccaatattggcgtgtttcacggctccaaatttaacaattcaaagacgttcgttttattattttaactattaaaaacgtattcttcggcgacacaaccaacaacagctgaaaaagcatatcgaagggaacacaatgtccaaaattgtaaaaggaaacaagttcgcaatagcaatatgtcgaaattgtgctgcataattca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI2120:PI2122|PI2120:PI2122:hypothetical protein:conserved hypothetical protein:->->:2069111..2069883 773 taattccaaaaccgactatacggatatgtaaagaagaagaactatgggaaaaagcgacaaaagttaagcggaaacagcatttgcagctataacaagtaagcagccgcttcagaaaataaagaacattctattcttaaaagcaacagacaatctaagaataccataaagactcataaacaaactgcaaaagccactctcaaactttaaaactatttaaaatctctcgccaaatttaacacgagagaaaacaacgaaatagaatcgtgaaacattaaaattagctcttgaaagtccaaaaagcaggaaccatttttcaaaagtgccacttttgcaatgcaaaacctacgcttttaccgtgcaaaacaaccgcttttgaattgctaaagaggcactttcgcctgtcatttttgttccttttatcactttttatgccttacattccacaacaagaagccgttttcatttcacacatatacccacaacagcatcttaacggctgactgacagaacgataaatattgcacgcaaaaagtgcccttatttgcaatcaactttcttgttgtgcgaaaaaactccaatattggcgtgtttcacggctccaaatttaacaattcaaagacgttcgttttattattttaactattaaaaacgtattcttcggcgacacaaccaacaacagctgaaaaagcatatcgaagggaacacaatgtccaaaattgtaaaaggaaacaagttcgcaatagcaatatgtcgaaattgtgctgcataattca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taattccaaaaccgactatacggatatgtaaagaagaagaactatgggaaaaagcgacaaaagttaagcggaaacagcatttgcagctataacaagtaagcagccgcttcagaaaataaagaacattctattcttaaaagcaacagacaatctaagaataccataaagactcataaacaaactgcaaaagccactctcaaactttaaaactatttaaaatctctcgccaaatttaacacgagagaaaacaacgaaatagaatcgtgaaacattaaaattagctcttgaaagtccaaaaagcaggaaccatttttcaaaagtgccacttttgcaatgcaaaacctacgcttttaccgtgcaaaacaaccgcttttgaattgctaaagaggcactttcgcctgtcatttttgttccttttatcactttttatgccttacattccacaacaagaagccgttttcatttcacacatatacccacaacagcatcttaacggctgactgacagaacgataaatattgcacgcaaaaagtgcccttatttgcaatcaactttcttgttgtgcgaaaaaactccaatattggcgtgtttcacggctccaaatttaacaattcaaagacgttcgttttattattttaactattaaaaacgtattcttcggcgacacaaccaacaacagctgaaaaagcatatcgaagggaacacaatgtccaaaattgtaaaaggaaacaagttcgcaatagcaatatgtcgaaattgtgctgcataattca Predict ORF larger than 30AA ================================================ Protein_Len: 38 Strand: + Start: 377 End: 490 ........................................................................................................................................................................................................................................................................................................................................................................................ M A K E A L S P V I F V P F I T F Y A L H S T T R S R F H F T H I P T T A S ........................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 285 End: 497 ............................................................................................................................................................................................................................................................................................ M K V Q K A G T I F Q K C H F C N A K P T L L P C K T T A F E L L K R H F R L S F L F L L S L F M P Y I P Q Q E A V F I .................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 516 End: 605 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M L H A K S A L I C N Q L S C C A K K L Q Y W R V S R L Q I ........................................................................................................................................................................ Protein_Len: 35 Strand: + Start: 532 End: 636 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M P L F A I N F L V V R K N S N I G V F H G S K F N N S K T F V L L F ......................................................................................................................................... Protein_Len: 49 Strand: + Start: 497 End: 643 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M T D R T I N I A R K K C P Y L Q S T F L L C E K T P I L A C F T A P N L T I Q R R S F Y Y F N Y .................................................................................................................................. Protein_Len: 38 Strand: + Start: 653 End: 766 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M L R R H N Q Q Q L K K H I E G N T M S K I V K G N K F A I A I C R N C A A ....... Protein_Len: 34 Strand: - Start: 646 End: 747 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... F R I R R R C L W C C S F F C I S P F V I D L I T F P F L N A I A M .......................... Protein_Len: 44 Strand: - Start: 639 End: 770 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. S N F V Y E E A V C G V V A S F A Y R L S C L T W F Q L L F C T R L L L I D F N H Q M M ... Protein_Len: 50 Strand: - Start: 608 End: 757 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... C N L S T R K I I K V I L F T N K P S V V L L L Q F L M D F P V C H G F N Y F S V L E C Y C Y T S M ................ Protein_Len: 38 Strand: - Start: 468 End: 581 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... V Y V W L L M K V A S Q C F S L Y Q V C F T G K N A I L K R T T R F F E L M ................................................................................................................................................................................................ Protein_Len: 37 Strand: - Start: 437 End: 547 .................................................................................................................................................................................................................................................................................................................................................................................................................................................... M G C C S A T K M E C M Y G C C C R L P Q S V S R Y I N C A F L A R I Q M .................................................................................................................................................................................................................................. Protein_Len: 38 Strand: - Start: 317 End: 430 ............................................................................................................................................................................................................................................................................................................................ F H W K Q L A F G V S K G H L V V A K S N S F L C K R R D N K N R K D S K M ....................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 41 Strand: - Start: 217 End: 339 ........................................................................................................................................................................................................................ F R E G F K V R S F V V F Y F R S V N F N A R S L G F L L F W K E F T G S K C H M .................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 41 Strand: - Start: 213 End: 335 .................................................................................................................................................................................................................... K F D R A L N L V L S F L S I S D H F M L I L E Q F D L F C S G N K L L A V K A M ...................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: - Start: 112 End: 213 ............................................................................................................... F I F F M R N K F A V S L R L I G Y L S M F L S C F G S E F K L V M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 37 Strand: - Start: 2 End: 112 . I G F G V I R I H L S S S S H S F A V F T L R F C C K C S Y C T L L R K M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... taattccaaaaccgactatacggatatgtaaagaagaagaactatgggaaaaagcgacaaaagttaagcggaaacagcatttgcagctataacaagtaagcagccgcttcagaaaataaagaacattctattcttaaaagcaacagacaatctaagaataccataaagactcataaacaaactgcaaaagccactctcaaactttaaaactatttaaaatctctcgccaaatttaacacgagagaaaacaacgaaatagaatcgtgaaacattaaaattagctcttgaaagtccaaaaagcaggaaccatttttcaaaagtgccacttttgcaatgcaaaacctacgcttttaccgtgcaaaacaaccgcttttgaattgctaaagaggcactttcgcctgtcatttttgttccttttatcactttttatgccttacattccacaacaagaagccgttttcatttcacacatatacccacaacagcatcttaacggctgactgacagaacgataaatattgcacgcaaaaagtgcccttatttgcaatcaactttcttgttgtgcgaaaaaactccaatattggcgtgtttcacggctccaaatttaacaattcaaagacgttcgttttattattttaactattaaaaacgtattcttcggcgacacaaccaacaacagctgaaaaagcatatcgaagggaacacaatgtccaaaattgtaaaaggaaacaagttcgcaatagcaatatgtcgaaattgtgctgcataattca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taattccaaaaccgactatacggatatgtaaagaagaagaactatgggaaaaagcgacaaaagttaagcggaaacagcatttgcagctataacaagtaagcagccgcttcagaaaataaagaacattctattcttaaaagcaacagacaatctaagaataccataaagactcataaacaaactgcaaaagccactctcaaactttaaaactatttaaaatctctcgccaaatttaacacgagagaaaacaacgaaatagaatcgtgaaacattaaaattagctcttgaaagtccaaaaagcaggaaccatttttcaaaagtgccacttttgcaatgcaaaacctacgcttttaccgtgcaaaacaaccgcttttgaattgctaaagaggcactttcgcctgtcatttttgttccttttatcactttttatgccttacattccacaacaagaagccgttttcatttcacacatatacccacaacagcatcttaacggctgactgacagaacgataaatattgcacgcaaaaagtgcccttatttgcaatcaactttcttgttgtgcgaaaaaactccaatattggcgtgtttcacggctccaaatttaacaattcaaagacgttcgttttattattttaactattaaaaacgtattcttcggcgacacaaccaacaacagctgaaaaagcatatcgaagggaacacaatgtccaaaattgtaaaaggaaacaagttcgcaatagcaatatgtcgaaattgtgctgcataattca Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: PI2120:PI2122|PI2120:PI2122:hypothetical protein:conserved hypothetical protein:->->:2069111..2069883 773 taattccaaaaccgactatacggatatgtaaagaagaagaactatgggaaaaagcgacaaaagttaagcggaaacagcatttgcagctataacaagtaagcagccgcttcagaaaataaagaacattctattcttaaaagcaacagacaatctaagaataccataaagactcataaacaaactgcaaaagccactctcaaactttaaaactatttaaaatctctcgccaaatttaacacgagagaaaacaacgaaatagaatcgtgaaacattaaaattagctcttgaaagtccaaaaagcaggaaccatttttcaaaagtgccacttttgcaatgcaaaacctacgcttttaccgtgcaaaacaaccgcttttgaattgctaaagaggcactttcgcctgtcatttttgttccttttatcactttttatgccttacattccacaacaagaagccgttttcatttcacacatatacccacaacagcatcttaacggctgactgacagaacgataaatattgcacgcaaaaagtgcccttatttgcaatcaactttcttgttgtgcgaaaaaactccaatattggcgtgtttcacggctccaaatttaacaattcaaagacgttcgttttattattttaactattaaaaacgtattcttcggcgacacaaccaacaacagctgaaaaagcatatcgaagggaacacaatgtccaaaattgtaaaaggaaacaagttcgcaatagcaatatgtcgaaattgtgctgcataattca Intra-Species Hit: Count: 1 Min: 1 Max: 773 Len: 773 Subject: pint_PI2120_PI2122|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2069111,2069883]|773 HSP 1 e-value: 0.0 bit: 1532.0 Len: 773 Query Start:1 Query End:773 Subject Strand: POSITIVE Subject Start: 1 Subject End: 773 taattccaaaaccgactatacggatatgtaaagaagaagaactatgggaaaaagcgacaaaagttaagcggaaacagcatttgcagctataacaagtaagcagccgcttcagaaaataaagaacattctattcttaaaagcaacagacaatctaagaataccataaagactcataaacaaactgcaaaagccactctcaaactttaaaactatttaaaatctctcgccaaatttaacacgagagaaaacaacgaaatagaatcgtgaaacattaaaattagctcttgaaagtccaaaaagcaggaaccatttttcaaaagtgccacttttgcaatgcaaaacctacgcttttaccgtgcaaaacaaccgcttttgaattgctaaagaggcactttcgcctgtcatttttgttccttttatcactttttatgccttacattccacaacaagaagccgttttcatttcacacatatacccacaacagcatcttaacggctgactgacagaacgataaatattgcacgcaaaaagtgcccttatttgcaatcaactttcttgttgtgcgaaaaaactccaatattggcgtgtttcacggctccaaatttaacaattcaaagacgttcgttttattattttaactattaaaaacgtattcttcggcgacacaaccaacaacagctgaaaaagcatatcgaagggaacacaatgtccaaaattgtaaaaggaaacaagttcgcaatagcaatatgtcgaaattgtgctgcataattca taattccaaaaccgactatacggatatgtaaagaagaagaactatgggaaaaagcgacaaaagttaagcggaaacagcatttgcagctataacaagtaagcagccgcttcagaaaataaagaacattctattcttaaaagcaacagacaatctaagaataccataaagactcataaacaaactgcaaaagccactctcaaactttaaaactatttaaaatctctcgccaaatttaacacgagagaaaacaacgaaatagaatcgtgaaacattaaaattagctcttgaaagtccaaaaagcaggaaccatttttcaaaagtgccacttttgcaatgcaaaacctacgcttttaccgtgcaaaacaaccgcttttgaattgctaaagaggcactttcgcctgtcatttttgttccttttatcactttttatgccttacattccacaacaagaagccgttttcatttcacacatatacccacaacagcatcttaacggctgactgacagaacgataaatattgcacgcaaaaagtgcccttatttgcaatcaactttcttgttgtgcgaaaaaactccaatattggcgtgtttcacggctccaaatttaacaattcaaagacgttcgttttattattttaactattaaaaacgtattcttcggcgacacaaccaacaacagctgaaaaagcatatcgaagggaacacaatgtccaaaattgtaaaaggaaacaagttcgcaatagcaatatgtcgaaattgtgctgcataattca Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUUCCAAAACCGACUAUACGGAUAUGUAAAGAAGAAGAACUAUGGGAAAAAGCGACAAAAGUUAAGCGGAAACAGCAUUUGCAGCUAUAACAAGUAAGCAGCCGCUUCAGAAAAUAAAGAACAUUCUAUUCUUAAAAGCAACAGACAAUCUAAGAAUACCAUAAAGACUCAUAAACAAACUGCAAAAGCCACUCUCAAACUUUAAAACUAUUUAAAAUCUCUCGCCAAAUUUAACACGAGAGAAAACAACGAAAUAGAAUCGUGAAACAUUAAAAUUAGCUCUUGAAAGUCCAAAAAGCAGGAACCAUUUUUCAAAAGUGCCACUUUUGCAAUGCAAAACCUACGCUUUUACCGUGCAAAACAACCGCUUUUGAAUUGCUAAAGAGGCACUUUCGCCUGUCAUUUUUGUUCCUUUUAUCACUUUUUAUGCCUUACAUUCCACAACAAGAAGCCGUUUUCAUUUCACACAUAUACCCACAACAGCAUCUUAACGGCUGACUGACAGAACGAUAAAUAUUGCACGCAAAAAGUGCCCUUAUUUGCAAUCAACUUUCUUGUUGUGCGAAAAAACUCCAAUAUUGGCGUGUUUCACGGCUCCAAAUUUAACAAUUCAAAGACGUUCGUUUUAUUAUUUUAACUAUUAAAAACGUAUUCUUCGGCGACACAACCAACAACAGCUGAAAAAGCAUAUCGAAGGGAACACAAUGUCCAAAAUUGUAAAAGGAAACAAGUUCGCAAUAGCAAUAUGUCGAAAUUGUGCUGCAUAAUUCA ...........(((......))).........(((((((((.((((....(((((((..((((((....(....).((.(((((((.........(.((((....)))))..................((((((((................)))))))).....................))))))).))........))))))........(((((.(((((((............))))))).............((..((((((((...............((((((..(((((((((((............((((((((.((((.(((((.(((((.(((((.......))))..........).))))).))))).)))).))))))))..)))))..))))))...)))))).........(((((.....((((((((((((((((((((.................................)))))))............(.((((((..((((.......))))...))))))).........)))))))))).)))..............)))))))))))))..))....)))))..............)))))))....(((((.....))))).)))))))))).(((.(((((.........(((.....)))...((((.(.(((((((((.......)))))....(....)..)))).).(((....))).))))..))))).)))....))). (-151.55) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAAUUAUGCAGCACAAUUUCGACAUAUUGCUAUUGCGAACUUGUUUCCUUUUACAAUUUUGGACAUUGUGUUCCCUUCGAUAUGCUUUUUCAGCUGUUGUUGGUUGUGUCGCCGAAGAAUACGUUUUUAAUAGUUAAAAUAAUAAAACGAACGUCUUUGAAUUGUUAAAUUUGGAGCCGUGAAACACGCCAAUAUUGGAGUUUUUUCGCACAACAAGAAAGUUGAUUGCAAAUAAGGGCACUUUUUGCGUGCAAUAUUUAUCGUUCUGUCAGUCAGCCGUUAAGAUGCUGUUGUGGGUAUAUGUGUGAAAUGAAAACGGCUUCUUGUUGUGGAAUGUAAGGCAUAAAAAGUGAUAAAAGGAACAAAAAUGACAGGCGAAAGUGCCUCUUUAGCAAUUCAAAAGCGGUUGUUUUGCACGGUAAAAGCGUAGGUUUUGCAUUGCAAAAGUGGCACUUUUGAAAAAUGGUUCCUGCUUUUUGGACUUUCAAGAGCUAAUUUUAAUGUUUCACGAUUCUAUUUCGUUGUUUUCUCUCGUGUUAAAUUUGGCGAGAGAUUUUAAAUAGUUUUAAAGUUUGAGAGUGGCUUUUGCAGUUUGUUUAUGAGUCUUUAUGGUAUUCUUAGAUUGUCUGUUGCUUUUAAGAAUAGAAUGUUCUUUAUUUUCUGAAGCGGCUGCUUACUUGUUAUAGCUGCAAAUGCUGUUUCCGCUUAACUUUUGUCGCUUUUUCCCAUAGUUCUUCUUCUUUACAUAUCCGUAUAGUCGGUUUUGGAAUUA .((((((((.(((((((((((((....((((....))))..((((........))))..))))).))))))))........((((((((...((((.((((((((.((((............((((((................)))))).(((.(((..((((....))))..))).)))...)))))))))))..).))))..(((.((((((((((..((((((((((.(((((.((((.......))))....))))).....)).)))))))).........((((((.....(((....))).......)))))).)))))))))))))...))))))))((((((((((((((...((((((.(.((((((((((((((.((((.(((((.(((((.(...((((((........))))))..).))))).))))).)))).))))))))))..........)))))))))))((((((..(((((((.............((((.......)))).....((((((((..........)))))))).......))))))))))))).(..((..((.(((((((((.(((((.((((((....)).)))).))))).((..((((((((..((((((((......))))))))..)))))))).))...........))))))))).))..))..)......))))))))))))))...))))))))..........((...(((......)))...))...... (-202.39) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 762 370 322 204 157 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 751 375 331 78 34 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 751 375 331 204 160 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 722 375 331 78 34 pint:PI1567|5end_hypothetical_protein_1489229..1489459_POSITIVE 710 370 322 73 26 pint:PI2002|5end_hypothetical_protein_1960662..1960892_POSITIVE 710 370 322 73 26 pint:PI1829|5end_hypothetical_protein_1769255..1769485_POSITIVE 710 370 322 61 14 pint:PI1129|5end_hypothetical_protein_1055377..1055607_POSITIVE 699 375 331 78 34 pint:PI1346|5end_hypothetical_protein_1260814..1261044_POSITIVE 699 370 326 45 1 pint:PI0061|5end_hypothetical_protein_60500..60730_POSITIVE 699 375 331 50 6 pint:PI0004|5end_hypothetical_protein_6199..6429_POSITIVE 698 375 331 220 176 pint:PI1486|5end_alginate_O-acetylation_protein_1405507..1405737_POSITIVE 692 370 322 100 53 pint:PI1604|5end_hypothetical_protein_1534017..1534247_POSITIVE 681 375 331 127 85 pint:PI0055|5end_hypothetical_protein_54815..55045_POSITIVE 670 375 331 86 42 pint:PI1168|5end_hypothetical_protein_1089696..1089926_POSITIVE 670 375 331 78 34 pint:PI1167|5end_hypothetical_protein_1089688..1089918_POSITIVE 665 380 331 83 37 pint:PI1076|5end_hypothetical_protein_998893..999123_POSITIVE 657 370 322 61 14 pint:PI2144|5end_hypothetical_protein_2091954..2092184_POSITIVE 657 370 322 73 26 pint:PI1601|5end_hypothetical_protein_1530282..1530512_POSITIVE 646 375 331 78 34 pint:PI1934|5end_hypothetical_protein_1882363..1882593_POSITIVE 633 370 322 231 187 pint:PI2003|5end_hypothetical_protein_1960823..1961053_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 710 370 322 56 9 pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE 681 375 331 120 78 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 681 370 322 115 68 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 681 375 331 61 19 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 677 365 322 150 108 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 677 365 322 150 108 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 652 370 322 129 82 pint:PI1356|3end_hypothetical_protein_1273340..1273490_POSITIVE 625 365 322 150 108 pint:PI0670|3end_hypothetical_protein_611280..611430_POSITIVE 625 365 322 150 108 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 588 365 322 150 108 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 588 365 322 150 108 pint:PI0004|3end_hypothetical_protein_6389..6539_POSITIVE 560 360 317 149 106 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 539 381 343 39 1 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE 520 381 343 39 1 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 470 370 322 149 102 pint:PI0182|3end_hypothetical_protein_174277..174427_POSITIVE 465 364 322 149 107 pint:PI0905|3end_hypothetical_protein_834697..834847_POSITIVE 450 356 317 151 112 pint:PI1601|3end_hypothetical_protein_1530454..1530604_POSITIVE 446 356 317 151 112 pint:PI1076|3end_hypothetical_protein_999065..999215_POSITIVE 441 364 322 149 108 pint:PI0158|3end_hypothetical_protein_151298..151448_POSITIVE 432 360 315 145 100 pint:PI0551|3end_hypothetical_protein_502683..502833_POSITIVE