Origin IGS: tagccgcaatagcacagcgaagaaaggcacacaatgtatgtaggagcgtgattctccacgttcctgacaccgaggaaaaatgttttcacatagtatttctaatcttcctaaggttcctataatcctttaagccaacacgtgaaaatcgcttcgattttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttacaaccatgttatcttcttttcgcctattccataaggtttacaagaacgcacaacgtcccctttttaaataaaggcaaacaactgaaaaagcgattgccgtttctcttttatagcggaaaagcg .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 cgcttttccgctataaaagagaaacggcaatcgctttttcagttgtttgcctttatttaaaaaggggacgttgtgcgttcttgtaaaccttatggaataggcgaaaagaagataacatggttgtaaatatttttcacaagtgtgtctattgtgtaactatctcatcaccaatgcattataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagcagctttcgcaacgtcaaatcgaaattatcgttttcttaacgaattatctttacaaaatcgaagcgattttcacgtgttggcttaaaggattataggaaccttaggaagattagaaatactatgtgaaaacatttttcctcggtgtcaggaacgtggagaatcacgctcctacatacattgtgtgcctttcttcgctgtgctattgcggcta Mask Tandem Repeat Region ================================================ tagccgcaatagcacagcgaagaaaggcacacaatgtatgtaggagcgtgattctccacgttcctgacaccgaggaaaaatgttttcacatagtatttctaatcttcctaaggttcctataatcctttaagccaacacgtgaaaatcgcttcgattttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttacaaccatgttatcttcttttcgcctattccataaggtttacaagaacgcacaacgtcccctttttaaataaaggcaaacaactgaaaaagcgattgccgtttctcttttatagcggaaaagcg Find is-nt database================================================ Query_seq: PI2088:PI2089|PI2088:PI2089:conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein:->->:2045876..2046339 464 tagccgcaatagcacagcgaagaaaggcacacaatgtatgtaggagcgtgattctccacgttcctgacaccgaggaaaaatgttttcacatagtatttctaatcttcctaaggttcctataatcctttaagccaacacgtgaaaatcgcttcgattttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttacaaccatgttatcttcttttcgcctattccataaggtttacaagaacgcacaacgtcccctttttaaataaaggcaaacaactgaaaaagcgattgccgtttctcttttatagcggaaaagcg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI2088:PI2089|PI2088:PI2089:conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein:->->:2045876..2046339 464 tagccgcaatagcacagcgaagaaaggcacacaatgtatgtaggagcgtgattctccacgttcctgacaccgaggaaaaatgttttcacatagtatttctaatcttcctaaggttcctataatcctttaagccaacacgtgaaaatcgcttcgattttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttacaaccatgttatcttcttttcgcctattccataaggtttacaagaacgcacaacgtcccctttttaaataaaggcaaacaactgaaaaagcgattgccgtttctcttttatagcggaaaagcg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI2088:PI2089|PI2088:PI2089:conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein:->->:2045876..2046339 464 tagccgcaatagcacagcgaagaaaggcacacaatgtatgtaggagcgtgattctccacgttcctgacaccgaggaaaaatgttttcacatagtatttctaatcttcctaaggttcctataatcctttaagccaacacgtgaaaatcgcttcgattttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttacaaccatgttatcttcttttcgcctattccataaggtttacaagaacgcacaacgtcccctttttaaataaaggcaaacaactgaaaaagcgattgccgtttctcttttatagcggaaaagcg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tagccgcaatagcacagcgaagaaaggcacacaatgtatgtaggagcgtgattctccacgttcctgacaccgaggaaaaatgttttcacatagtatttctaatcttcctaaggttcctataatcctttaagccaacacgtgaaaatcgcttcgattttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttacaaccatgttatcttcttttcgcctattccataaggtttacaagaacgcacaacgtcccctttttaaataaaggcaaacaactgaaaaagcgattgccgtttctcttttatagcggaaaagcg Predict ORF larger than 30AA ================================================ Protein_Len: 37 Strand: + Start: 9 End: 119 ........ M A Q R R K A H N V C R S V I L H V P D T E E K C F H I V F L I F L R F L ......................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: + Start: 195 End: 305 .................................................................................................................................................................................................. M T L R K L L F C N A K P T L L P C K T A A F G M Q N N R F Y N A L V M R ............................................................................................................................................................... Protein_Len: 31 Strand: + Start: 372 End: 464 ................................................................................................................................................................................................................................................................................................................................................................................... M R F T R T H N V P F L N K G K Q L K K R L P F L F Y S G K A Protein_Len: 38 Strand: - Start: 235 End: 348 .......................................................................................................................................................................................................................................... A K V T C F L R K Q F A F C Y T K Y H M P S S I T V C Y V C K H F I N V V M .................................................................................................................... Protein_Len: 34 Strand: - Start: 176 End: 277 ............................................................................................................................................................................... S F S L K S K V N R F S S N Q L A F G V S K G H L V A A K P I C F M ........................................................................................................................................................................................... Protein_Len: 33 Strand: - Start: 130 End: 228 ................................................................................................................................. A L V H F D S R N Q L S L E N L F R Y N R N S T A F A A T K C R M ............................................................................................................................................................................................................................................ Protein_Len: 41 Strand: - Start: 1 End: 123 L R L L V A F F P V C H I Y S R S E G R E Q C R P F I N E C L I E L R G L T G I M ..................................................................................................................................................................................................................................................................................................................................................... tagccgcaatagcacagcgaagaaaggcacacaatgtatgtaggagcgtgattctccacgttcctgacaccgaggaaaaatgttttcacatagtatttctaatcttcctaaggttcctataatcctttaagccaacacgtgaaaatcgcttcgattttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttacaaccatgttatcttcttttcgcctattccataaggtttacaagaacgcacaacgtcccctttttaaataaaggcaaacaactgaaaaagcgattgccgtttctcttttatagcggaaaagcg Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 85 Start: 261 End: 290 ....................................................................................................................................................................................................................................................................TTTGGAATGCAAAACAATAGGTTTTATAAT.............................................................................................................................................................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tagccgcaatagcacagcgaagaaaggcacacaatgtatgtaggagcgtgattctccacgttcctgacaccgaggaaaaatgttttcacatagtatttctaatcttcctaaggttcctataatcctttaagccaacacgtgaaaatcgcttcgattttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttacaaccatgttatcttcttttcgcctattccataaggtttacaagaacgcacaacgtcccctttttaaataaaggcaaacaactgaaaaagcgattgccgtttctcttttatagcggaaaagcg Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 86 HP_score: -11.2 Tail_Score: -4.13767 Start: 209 End: 259 Full_Region: TTTGACGTTGCGAAA GCTGCTGTTTTGCAACGCAAAACC TAC GCTTTTACCGTGCAAAACAGCCGC TTTTGGAATGCAAAA ................................................................................................................................................................................................................GCTGCTGTTTTGCAACGCAAAACCTACGCTTTTACCGTGCAAAACAGCCGC............................................................................................................................................................................................................. TransTerm Strand: - Conf: 100 HP_score: -13.4 Tail_Score: -3.54424 Start: 209 End: 259 Full_Region: ttttgcattccaaaa gcggctgttttgcacggtaaaagc gta ggttttgcgttgcaaaacagcagc tttcgcaacgtcaaa ................................................................................................................................................................................................................gcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagcagc............................................................................................................................................................................................................. Find igs database================================================ Query_seq: PI2088:PI2089|PI2088:PI2089:conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein:->->:2045876..2046339 464 tagccgcaatagcacagcgaagaaaggcacacaatgtatgtaggagcgtgattctccacgttcctgacaccgaggaaaaatgttttcacatagtatttctaatcttcctaaggttcctataatcctttaagccaacacgtgaaaatcgcttcgattttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttacaaccatgttatcttcttttcgcctattccataaggtttacaagaacgcacaacgtcccctttttaaataaaggcaaacaactgaaaaagcgattgccgtttctcttttatagcggaaaagcg Intra-Species Hit: Count: 53 Min: 1 Max: 464 Len: 464 Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 0.0 bit: 920.0 Len: 464 Query Start:1 Query End:464 Subject Strand: POSITIVE Subject Start: 1 Subject End: 464 tagccgcaatagcacagcgaagaaaggcacacaatgtatgtaggagcgtgattctccacgttcctgacaccgaggaaaaatgttttcacatagtatttctaatcttcctaaggttcctataatcctttaagccaacacgtgaaaatcgcttcgattttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttacaaccatgttatcttcttttcgcctattccataaggtttacaagaacgcacaacgtcccctttttaaataaaggcaaacaactgaaaaagcgattgccgtttctcttttatagcggaaaagcg tagccgcaatagcacagcgaagaaaggcacacaatgtatgtaggagcgtgattctccacgttcctgacaccgaggaaaaatgttttcacatagtatttctaatcttcctaaggttcctataatcctttaagccaacacgtgaaaatcgcttcgattttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttacaaccatgttatcttcttttcgcctattccataaggtttacaagaacgcacaacgtcccctttttaaataaaggcaaacaactgaaaaagcgattgccgtttctcttttatagcggaaaagcg Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 2.0E-88 bit: 327.0 Len: 229 Query Start:57 Query End:285 Subject Strand: NEGATIVE Subject Start: 332 Subject End: 560 ........................................................cacgttcctgacaccgaggaaaaatgttttcacatagtatttctaatcttcctaaggttcctataatcctttaagccaacacgtgaaaatcgcttcgattttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt................................................................................................................................................................................... ........................................................cacgttcttgtcacccaagaaaaatgttttcacctaatatttctaagcttcctaaggtttctataaacctttaagccaacacgtgaaaatcgctttggttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagcagctcttttgcaacgcaaaacctatgcttttaccgtgcaaaacagccgcttttaggatgcaaaacaataggtttt................................................................................................................................................................................... Subject: pint_PI2056_PI2057|conserved hypothetical protein:conserved hypothetical protein; possible metal-dependent membrane protease|POSITIVE:POSITIVE|[2014489,2015078]|590 HSP 1 e-value: 5.0E-80 bit: 299.0 Len: 247 Query Start:57 Query End:303 Subject Strand: POSITIVE Subject Start: 243 Subject End: 489 ........................................................cacgttcctgacaccgaggaaaaatgttttcacatagtatttctaatcttcctaaggttcctataatcctttaagccaacacgtgaaaatcgcttcgattttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatga................................................................................................................................................................. ........................................................cacgttcctaacaccaaagaaaaatgtcttcacctaatatttctaatcttcctaaggttcctataaaccttcaagccaacacagggaaatcgccttgattttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatacactggtgatga................................................................................................................................................................. Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 3.0E-53 bit: 210.0 Len: 162 Query Start:125 Query End:286 Subject Strand: POSITIVE Subject Start: 183 Subject End: 346 ............................................................................................................................ctttaagccaacacgtg--aaaatcgcttcgattttgtaaagataatt-cgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttta.................................................................................................................................................................................. ............................................................................................................................ctttcagccaacacgtgggaaaatcgcctcggttttgtaaagataatttcgctga-aaaacgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttta.................................................................................................................................................................................. Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 1.0E-52 bit: 208.0 Len: 137 Query Start:153 Query End:289 Subject Strand: POSITIVE Subject Start: 67 Subject End: 203 ........................................................................................................................................................gattttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataa............................................................................................................................................................................... ........................................................................................................................................................gattctgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataa............................................................................................................................................................................... Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 5.0E-46 bit: 186.0 Len: 190 Query Start:154 Query End:343 Subject Strand: NEGATIVE Subject Start: 247 Subject End: 436 .........................................................................................................................................................attttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttaca......................................................................................................................... .........................................................................................................................................................attttgtaaagataattctcttaaaaagtgataactgcgctttgacgttgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacacgttgatgcacagttagttacataatagatactcgtgtgaaaaatatttaca......................................................................................................................... Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 5.0E-46 bit: 186.0 Len: 138 Query Start:155 Query End:292 Subject Strand: POSITIVE Subject Start: 10 Subject End: 147 ..........................................................................................................................................................ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgc............................................................................................................................................................................ ..........................................................................................................................................................ttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgc............................................................................................................................................................................ Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 7.0E-45 bit: 182.0 Len: 135 Query Start:155 Query End:289 Subject Strand: NEGATIVE Subject Start: 107 Subject End: 241 ..........................................................................................................................................................ttttgtaaagataattc-gttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataa............................................................................................................................................................................... ..........................................................................................................................................................ttttgtaaaaataattccgttaa-aaagcgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataa............................................................................................................................................................................... Subject: pint_PI1803_PI1804|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1737852,1738248]|397 HSP 1 e-value: 2.0E-42 bit: 174.0 Len: 132 Query Start:155 Query End:286 Subject Strand: POSITIVE Subject Start: 266 Subject End: 397 ..........................................................................................................................................................ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttta.................................................................................................................................................................................. ..........................................................................................................................................................ttttgtaaagattattccgaaagaaaacggtaatttcgatttggcattgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttacaatgcaaaacaataggtttta.................................................................................................................................................................................. Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 7.0E-42 bit: 172.0 Len: 115 Query Start:178 Query End:292 Subject Strand: NEGATIVE Subject Start: 380 Subject End: 494 .................................................................................................................................................................................aaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgc............................................................................................................................................................................ .................................................................................................................................................................................aaaatgataatttcgatttggcattgcgaaagcggctgttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatgc............................................................................................................................................................................ Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 7.0E-42 bit: 172.0 Len: 131 Query Start:155 Query End:285 Subject Strand: POSITIVE Subject Start: 91 Subject End: 221 ..........................................................................................................................................................ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt................................................................................................................................................................................... ..........................................................................................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggtttt................................................................................................................................................................................... Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 7.0E-42 bit: 172.0 Len: 119 Query Start:178 Query End:296 Subject Strand: NEGATIVE Subject Start: 30 Subject End: 148 .................................................................................................................................................................................aaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattg........................................................................................................................................................................ .................................................................................................................................................................................aaaacaataatttcgttttgacgttgcgaaagcggctcttttacaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggttttgtaaagcattg........................................................................................................................................................................ Subject: pint_PI0694_PI0695|Na+/dicarboxylate or sulfate symporter:xanthine/uracil permease family protein|POSITIVE:POSITIVE|[631238,631552]|315 HSP 1 e-value: 7.0E-42 bit: 172.0 Len: 131 Query Start:155 Query End:285 Subject Strand: POSITIVE Subject Start: 88 Subject End: 218 ..........................................................................................................................................................ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt................................................................................................................................................................................... ..........................................................................................................................................................ttttgtaaagataattccgacggaaaacggtaatttcgatttgacactgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggtttt................................................................................................................................................................................... Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 7.0E-42 bit: 172.0 Len: 131 Query Start:155 Query End:285 Subject Strand: NEGATIVE Subject Start: 88 Subject End: 218 ..........................................................................................................................................................ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt................................................................................................................................................................................... ..........................................................................................................................................................ttttgtaaagattatttctttagaaaatggtaatttcgatttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt................................................................................................................................................................................... Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 3.0E-41 bit: 170.0 Len: 138 Query Start:155 Query End:292 Subject Strand: POSITIVE Subject Start: 113 Subject End: 250 ..........................................................................................................................................................ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgc............................................................................................................................................................................ ..........................................................................................................................................................ttttgtaaagataatttctttgaaaaatggtaatttcgatttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgc............................................................................................................................................................................ Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 3.0E-41 bit: 170.0 Len: 150 Query Start:194 Query End:343 Subject Strand: POSITIVE Subject Start: 140 Subject End: 289 .................................................................................................................................................................................................tttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttaca......................................................................................................................... .................................................................................................................................................................................................tttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttaca......................................................................................................................... Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 2.0E-39 bit: 165.0 Len: 158 Query Start:154 Query End:311 Subject Strand: POSITIVE Subject Start: 110 Subject End: 267 .........................................................................................................................................................attttgtaaagataattc-gttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagtta......................................................................................................................................................... .........................................................................................................................................................attttgtaaagataattctgttaa-aaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttataatgcgttgatggttagatagtta......................................................................................................................................................... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 7.0E-39 bit: 163.0 Len: 150 Query Start:194 Query End:343 Subject Strand: POSITIVE Subject Start: 98 Subject End: 247 .................................................................................................................................................................................................tttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttaca......................................................................................................................... .................................................................................................................................................................................................tttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttaca......................................................................................................................... Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 7.0E-39 bit: 163.0 Len: 189 Query Start:155 Query End:343 Subject Strand: POSITIVE Subject Start: 50 Subject End: 238 ..........................................................................................................................................................ttttgtaaagataattc-gttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttaca......................................................................................................................... ..........................................................................................................................................................ttttgtaaagataattccgttaa-aaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttaca......................................................................................................................... Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 1.0E-37 bit: 159.0 Len: 131 Query Start:155 Query End:285 Subject Strand: NEGATIVE Subject Start: 98 Subject End: 228 ..........................................................................................................................................................ttttgtaaagataattc-gttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt................................................................................................................................................................................... ..........................................................................................................................................................ttttgtaaagataattctgttaa-aaactgataactgcgttttgacattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggtttt................................................................................................................................................................................... Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 4.0E-37 bit: 157.0 Len: 103 Query Start:183 Query End:285 Subject Strand: NEGATIVE Subject Start: 411 Subject End: 513 ......................................................................................................................................................................................gataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt................................................................................................................................................................................... ......................................................................................................................................................................................gataatttcgttttgacgttgcgaaagcggctgttttgcgaggtaaaacctacgcttttgccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt................................................................................................................................................................................... Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 2.0E-36 bit: 155.0 Len: 189 Query Start:155 Query End:343 Subject Strand: NEGATIVE Subject Start: 37 Subject End: 225 ..........................................................................................................................................................ttttgtaaagataattc-gttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttaca......................................................................................................................... ..........................................................................................................................................................ttttgtaaagataattctgttaa-aaactgataactgcgctttgacgttgcgaaagcggctcttttacgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgtaatacgttgatgattagatagttaagcaatagatatatgtgcgaaaaatatttaca......................................................................................................................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 2.0E-36 bit: 155.0 Len: 142 Query Start:155 Query End:296 Subject Strand: POSITIVE Subject Start: 146 Subject End: 287 ..........................................................................................................................................................ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattg........................................................................................................................................................................ ..........................................................................................................................................................ttttgtaaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacattg........................................................................................................................................................................ Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 4.0E-34 bit: 147.0 Len: 138 Query Start:155 Query End:292 Subject Strand: POSITIVE Subject Start: 166 Subject End: 303 ..........................................................................................................................................................ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgc............................................................................................................................................................................ ..........................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgttttgacattgcgaaagcggctgttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgc............................................................................................................................................................................ Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 6.0E-33 bit: 143.0 Len: 192 Query Start:152 Query End:343 Subject Strand: POSITIVE Subject Start: 138 Subject End: 329 .......................................................................................................................................................cgattttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttaca......................................................................................................................... .......................................................................................................................................................cgattttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgccttaaaagtgagatagttacacaacggtaacacttgtgaaaaatatttaca......................................................................................................................... Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 6.0E-33 bit: 143.0 Len: 131 Query Start:155 Query End:285 Subject Strand: POSITIVE Subject Start: 114 Subject End: 244 ..........................................................................................................................................................ttttgtaaagataattc-gttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt................................................................................................................................................................................... ..........................................................................................................................................................ttttgtaaagattattctgttaa-aaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggtttt................................................................................................................................................................................... Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 2.0E-32 bit: 141.0 Len: 134 Query Start:156 Query End:289 Subject Strand: POSITIVE Subject Start: 200 Subject End: 333 ...........................................................................................................................................................tttgtaaagataattc-gttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataa............................................................................................................................................................................... ...........................................................................................................................................................tttgtaaagataattccgttaa-aaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataa............................................................................................................................................................................... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 1.0E-31 bit: 139.0 Len: 137 Query Start:156 Query End:292 Subject Strand: POSITIVE Subject Start: 480 Subject End: 616 ...........................................................................................................................................................tttgtaaagataattc-gttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgc............................................................................................................................................................................ ...........................................................................................................................................................tttgtaaagataattctgttaa-aaagtgataactgcgctttggcattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatgc............................................................................................................................................................................ Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 4.0E-31 bit: 137.0 Len: 189 Query Start:155 Query End:343 Subject Strand: NEGATIVE Subject Start: 94 Subject End: 282 ..........................................................................................................................................................ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttaca......................................................................................................................... ..........................................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgtaaaacaataggttttgtaaggcgttgataaacaaagagttgcgcaatagaattacttgtgaaaaatatttaca......................................................................................................................... Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 4.0E-31 bit: 137.0 Len: 137 Query Start:156 Query End:292 Subject Strand: POSITIVE Subject Start: 310 Subject End: 446 ...........................................................................................................................................................tttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgc............................................................................................................................................................................ ...........................................................................................................................................................tttgtaaagataatttctttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtcttgtaatgc............................................................................................................................................................................ Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 4.0E-31 bit: 137.0 Len: 136 Query Start:157 Query End:292 Subject Strand: POSITIVE Subject Start: 170 Subject End: 305 ............................................................................................................................................................ttgtaaagataattc-gttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgc............................................................................................................................................................................ ............................................................................................................................................................ttgtaaagataattccgttaa-aaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgc............................................................................................................................................................................ Subject: pint_PI0195_PI0196|epimerase/reductase:hypothetical protein|POSITIVE:POSITIVE|[188263,188574]|312 HSP 1 e-value: 4.0E-31 bit: 137.0 Len: 133 Query Start:158 Query End:290 Subject Strand: POSITIVE Subject Start: 148 Subject End: 280 .............................................................................................................................................................tgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataat.............................................................................................................................................................................. .............................................................................................................................................................tgtaaaaataattcgtagagaaaatgacaatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaat.............................................................................................................................................................................. Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 2.0E-30 bit: 135.0 Len: 108 Query Start:178 Query End:285 Subject Strand: NEGATIVE Subject Start: 57 Subject End: 164 .................................................................................................................................................................................aaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt................................................................................................................................................................................... .................................................................................................................................................................................aaaacggtaatttcgatttggcgttgcgaaagcggctgttttgcagcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt................................................................................................................................................................................... Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 6.0E-30 bit: 133.0 Len: 131 Query Start:155 Query End:285 Subject Strand: NEGATIVE Subject Start: 107 Subject End: 237 ..........................................................................................................................................................ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt................................................................................................................................................................................... ..........................................................................................................................................................ttttgtaaagattattcgtaagaaaaatgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacagccgcttttgccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt................................................................................................................................................................................... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 6.0E-30 bit: 133.0 Len: 142 Query Start:155 Query End:296 Subject Strand: NEGATIVE Subject Start: 86 Subject End: 227 ..........................................................................................................................................................ttttgtaaagataattc-gttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattg........................................................................................................................................................................ ..........................................................................................................................................................ttttgtaaagataattctgttaa-aaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgcaatgcattg........................................................................................................................................................................ Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 2.0E-29 bit: 131.0 Len: 130 Query Start:156 Query End:285 Subject Strand: NEGATIVE Subject Start: 255 Subject End: 384 ...........................................................................................................................................................tttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt................................................................................................................................................................................... ...........................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccacttttggaacgcaaaacaataggtttt................................................................................................................................................................................... Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 9.0E-29 bit: 129.0 Len: 189 Query Start:155 Query End:343 Subject Strand: POSITIVE Subject Start: 141 Subject End: 329 ..........................................................................................................................................................ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttaca......................................................................................................................... ..........................................................................................................................................................ttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttaca......................................................................................................................... Subject: pint_PI0854_PI0855|MiaB-like tRNA modifying enzyme:hypothetical protein|POSITIVE:POSITIVE|[788060,789233]|1174 HSP 1 e-value: 9.0E-29 bit: 129.0 Len: 113 Query Start:178 Query End:290 Subject Strand: POSITIVE Subject Start: 764 Subject End: 876 .................................................................................................................................................................................aaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataat.............................................................................................................................................................................. .................................................................................................................................................................................aaaatgataatttcgatttggcgttgcgaaagcgtaggttttgcaacgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttataat.............................................................................................................................................................................. Subject: pint_PI1915_PI1916|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1859967,1860350]|384 HSP 1 e-value: 4.0E-28 bit: 127.0 Len: 158 Query Start:139 Query End:296 Subject Strand: POSITIVE Subject Start: 98 Subject End: 255 ..........................................................................................................................................gtgaaaatcgcttcgattttgtaaagataattcgttaagaaaa-cgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacc-tacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattg........................................................................................................................................................................ ..........................................................................................................................................gtgaaaatcgccttgattttgtaaaaataattc-tgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatgtattg........................................................................................................................................................................ HSP 2 e-value: 8.0E-17 bit: 89.7 Len: 57 Query Start:206 Query End:262 Subject Strand: NEGATIVE Subject Start: 165 Subject End: 221 .............................................................................................................................................................................................................aaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttt.......................................................................................................................................................................................................... .............................................................................................................................................................................................................aaagcggctgttttgcaacgtaaaacatacgcttttaccgtgcaaaacagccgcttt.......................................................................................................................................................................................................... Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 4.0E-28 bit: 127.0 Len: 136 Query Start:155 Query End:290 Subject Strand: NEGATIVE Subject Start: 228 Subject End: 362 ..........................................................................................................................................................ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataat.............................................................................................................................................................................. ..........................................................................................................................................................ttttgtaaagataattcattga-aaaacgataatttcgatttggcattgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacacttttggaatgcaaaacaataggttttataat.............................................................................................................................................................................. Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 137 Query Start:153 Query End:289 Subject Strand: NEGATIVE Subject Start: 170 Subject End: 306 ........................................................................................................................................................gattttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataa............................................................................................................................................................................... ........................................................................................................................................................gattttgtaaagataattcggagggaaaatgataatttcgatttgacgttgcgaaagcgtatgttttgcgatgcaaaagagccgcttttaccgtgcaaaacctacgcttttacaatgcaaaacaataggttttataa............................................................................................................................................................................... Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 189 Query Start:155 Query End:343 Subject Strand: POSITIVE Subject Start: 144 Subject End: 332 ..........................................................................................................................................................ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttaca......................................................................................................................... ..........................................................................................................................................................ttttgtaaagataattcgttgaaaaaatgataatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgcaaagtcttgatagtgagatagttatgcaatggttacgcttgtgaaaaatatttaca......................................................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:206 Query End:240 Subject Strand: NEGATIVE Subject Start: 195 Subject End: 229 .............................................................................................................................................................................................................aaagctgctgttttgcaacgcaaaacctacgcttt................................................................................................................................................................................................................................ .............................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt................................................................................................................................................................................................................................ Subject: pint_PI1728_PI1729|ATP-dependent Clp protease, proteolytic subunit:FKBP-type peptidyl-prolyl cis-trans isomerase, trigger factor|POSITIVE:POSITIVE|[1647719,1648555]|837 HSP 1 e-value: 4.0E-25 bit: 117.0 Len: 135 Query Start:155 Query End:289 Subject Strand: NEGATIVE Subject Start: 412 Subject End: 546 ..........................................................................................................................................................ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataa............................................................................................................................................................................... ..........................................................................................................................................................ttttgtaaagataattcgttgagaaaacggtaatttcgatttgacgttgcaaaagcgtaggttttgcaaggcaaaagagccgcttttaccgtgcaaaagcggctcttttacaatgcgaaacaataggttttataa............................................................................................................................................................................... Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 4.0E-25 bit: 117.0 Len: 131 Query Start:155 Query End:285 Subject Strand: POSITIVE Subject Start: 185 Subject End: 315 ..........................................................................................................................................................ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt................................................................................................................................................................................... ..........................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggtttt................................................................................................................................................................................... Subject: pint_PI1958_PI1959|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1917430,1917847]|418 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 157 Query Start:149 Query End:305 Subject Strand: POSITIVE Subject Start: 176 Subject End: 332 ....................................................................................................................................................cttcgattttgtaaagataattc-gttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgaga............................................................................................................................................................... ....................................................................................................................................................cttcaattttgtaaagataattctgataa-aaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgaga............................................................................................................................................................... Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 150 Query Start:194 Query End:343 Subject Strand: POSITIVE Subject Start: 150 Subject End: 299 .................................................................................................................................................................................................tttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttaca......................................................................................................................... .................................................................................................................................................................................................tttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttaca......................................................................................................................... Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 150 Query Start:194 Query End:343 Subject Strand: POSITIVE Subject Start: 226 Subject End: 375 .................................................................................................................................................................................................tttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttaca......................................................................................................................... .................................................................................................................................................................................................tttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttaca......................................................................................................................... Subject: pint_PI1981_PI1982|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1938199,1938578]|380 HSP 1 e-value: 2.0E-23 bit: 111.0 Len: 120 Query Start:186 Query End:305 Subject Strand: POSITIVE Subject Start: 175 Subject End: 294 .........................................................................................................................................................................................aatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgaga............................................................................................................................................................... .........................................................................................................................................................................................aatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgaga............................................................................................................................................................... Subject: pint_PI1117_PI1118|glycosyl transferase, family 2:glycosyl transferases, group 1|POSITIVE:POSITIVE|[1042340,1042635]|296 HSP 1 e-value: 2.0E-23 bit: 111.0 Len: 116 Query Start:176 Query End:291 Subject Strand: NEGATIVE Subject Start: 83 Subject End: 198 ...............................................................................................................................................................................agaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatg............................................................................................................................................................................. ...............................................................................................................................................................................agaatacgataaattcactttgacattccaaaagcggttgttttgcgatgcaaaacctacgcttttaccgtgtaaaacagccgcttttggaacgcgaaacaataggttttacaatg............................................................................................................................................................................. Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 5.0E-21 bit: 103.0 Len: 144 Query Start:155 Query End:298 Subject Strand: POSITIVE Subject Start: 201 Subject End: 343 ..........................................................................................................................................................ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggt...................................................................................................................................................................... ..........................................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttggt...................................................................................................................................................................... Subject: pint_PI1441_PI1442|hypothetical protein:radical-activating enzyme (pyruvate-formate lyase-activating enzyme)|POSITIVE:POSITIVE|[1363734,1364088]|355 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 131 Query Start:155 Query End:285 Subject Strand: NEGATIVE Subject Start: 86 Subject End: 216 ..........................................................................................................................................................ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt................................................................................................................................................................................... ..........................................................................................................................................................ttttgtaaagataatttacaaggaaaacggtattttcgatttgacgttgcgaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt................................................................................................................................................................................... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 141 Query Start:146 Query End:286 Subject Strand: NEGATIVE Subject Start: 178 Subject End: 318 .................................................................................................................................................tcgcttcgattttgtaaagataattc-gttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttta.................................................................................................................................................................................. .................................................................................................................................................tcgcttcggctttgtaaagataattccgttaa-aaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttta.................................................................................................................................................................................. Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 8.0E-17 bit: 89.7 Len: 144 Query Start:153 Query End:296 Subject Strand: POSITIVE Subject Start: 189 Subject End: 332 ........................................................................................................................................................gattttgtaaagataatt-cgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattg........................................................................................................................................................................ ........................................................................................................................................................gattttgtaaagataatttcgttaa-aaagtgataactgcactttgacgttgcgaaagcggctgttttacgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttaggacgcaaaacaatagattttgtaatgcattg........................................................................................................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGCCGCAAUAGCACAGCGAAGAAAGGCACACAAUGUAUGUAGGAGCGUGAUUCUCCACGUUCCUGACACCGAGGAAAAAUGUUUUCACAUAGUAUUUCUAAUCUUCCUAAGGUUCCUAUAAUCCUUUAAGCCAACACGUGAAAAUCGCUUCGAUUUUGUAAAGAUAAUUCGUUAAGAAAACGAUAAUUUCGAUUUGACGUUGCGAAAGCUGCUGUUUUGCAACGCAAAACCUACGCUUUUACCGUGCAAAACAGCCGCUUUUGGAAUGCAAAACAAUAGGUUUUAUAAUGCAUUGGUGAUGAGAUAGUUACACAAUAGACACACUUGUGAAAAAUAUUUACAACCAUGUUAUCUUCUUUUCGCCUAUUCCAUAAGGUUUACAAGAACGCACAACGUCCCCUUUUUAAAUAAAGGCAAACAACUGAAAAAGCGAUUGCCGUUUCUCUUUUAUAGCGGAAAAGCG ...((((.((((...((.((((...(((.(((......((((((((((((......))))))))).)))..(((((...((((....)))).........(((((.....))))).......)))))...........)))..((((((((((.(((((((((((....(((((.....))))).....))..((((.((((.(((((((.(((((((((((.((.((((.......))))..))))))))))))).))))))).))))))))..(((((((..........(((((((((......))))).)))).((((...(((((((.....)))))))...))))...........)))))))........))))))))).))......((..(((((......)))))...))........))))))))))).)))).)).)))).))))....... (-114.40) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CGCUUUUCCGCUAUAAAAGAGAAACGGCAAUCGCUUUUUCAGUUGUUUGCCUUUAUUUAAAAAGGGGACGUUGUGCGUUCUUGUAAACCUUAUGGAAUAGGCGAAAAGAAGAUAACAUGGUUGUAAAUAUUUUUCACAAGUGUGUCUAUUGUGUAACUAUCUCAUCACCAAUGCAUUAUAAAACCUAUUGUUUUGCAUUCCAAAAGCGGCUGUUUUGCACGGUAAAAGCGUAGGUUUUGCGUUGCAAAACAGCAGCUUUCGCAACGUCAAAUCGAAAUUAUCGUUUUCUUAACGAAUUAUCUUUACAAAAUCGAAGCGAUUUUCACGUGUUGGCUUAAAGGAUUAUAGGAACCUUAGGAAGAUUAGAAAUACUAUGUGAAAACAUUUUUCCUCGGUGUCAGGAACGUGGAGAAUCACGCUCCUACAUACAUUGUGUGCCUUUCUUCGCUGUGCUAUUGCGGCUA .........((..(((.((....(((((..(((((((((((...((((((.............(((((((.....)))))))))))))....))))).))))))...(((((..(((..((.((......(((((((((((((.((((..(((((................))))).......((((..(((((....(((.(((((.(((((((((((((...(((((....))))).)).))))))))))).))))).((.((((.((((((......(((((.....))))).....((((........))))))))))..))))....)).....))).....)))))..)))).....)))).))))).))))))))............((((.((((.((((......)))).))))))))))))..))).....)))))))))).)).)))..)).. (-121.80) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 948 270 221 84 35 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 948 270 221 210 161 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 948 270 221 215 166 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 919 270 221 84 35 pint:PI1567|5end_hypothetical_protein_1489229..1489459_POSITIVE 907 280 231 51 2 pint:PI1905|5end_hypothetical_protein_1847628..1847858_POSITIVE 907 280 231 94 45 pint:PI1346|5end_hypothetical_protein_1260814..1261044_POSITIVE 907 280 231 55 6 pint:PI1339|5end_hypothetical_protein_1256671..1256901_POSITIVE 907 280 231 82 33 pint:PI1129|5end_hypothetical_protein_1055377..1055607_POSITIVE 907 280 231 55 6 pint:PI0104|5end_hypothetical_protein_99105..99335_POSITIVE 907 280 231 66 17 pint:PI0061|5end_hypothetical_protein_60500..60730_POSITIVE 907 280 231 143 94 pint:PI0055|5end_hypothetical_protein_54815..55045_POSITIVE 907 280 231 55 6 pint:PI0053|5end_hypothetical_protein_54727..54957_POSITIVE 907 280 231 66 17 pint:PI0004|5end_hypothetical_protein_6199..6429_POSITIVE 881 280 231 94 45 pint:PI2002|5end_hypothetical_protein_1960662..1960892_POSITIVE 880 250 201 206 157 pint:PI1486|5end_alginate_O-acetylation_protein_1405507..1405737_POSITIVE 856 280 231 94 45 pint:PI1076|5end_hypothetical_protein_998893..999123_POSITIVE 855 280 231 55 6 pint:PI0099|5end_hypothetical_protein_95530..95760_POSITIVE 840 270 223 72 25 pint:PI2144|5end_hypothetical_protein_2091954..2092184_POSITIVE 835 280 231 94 45 pint:PI1934|5end_hypothetical_protein_1882363..1882593_POSITIVE 835 280 231 77 28 pint:PI1528|5end_hypothetical_protein_1449685..1449915_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 907 280 231 136 87 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 907 280 231 77 28 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 878 280 231 136 87 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 874 280 232 49 1 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 874 280 232 49 1 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE 847 270 221 140 91 pint:PI1356|3end_hypothetical_protein_1273340..1273490_POSITIVE 830 280 231 77 28 pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE 808 250 201 146 97 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 771 250 201 150 101 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 771 250 201 146 97 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 770 285 241 48 4 pint:PI0669|3end_hypothetical_protein_611147..611297_POSITIVE 735 230 181 147 98 pint:PI1905|3end_hypothetical_protein_1847854..1848004_POSITIVE 732 250 201 146 97 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 732 250 201 146 97 pint:PI0004|3end_hypothetical_protein_6389..6539_POSITIVE 712 280 236 45 1 pint:PI1051|3end_hypothetical_protein_970228..970378_POSITIVE 699 250 201 146 97 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 678 179 131 151 101 pint:PI2153|3end_hypothetical_protein_2099630..2099780_POSITIVE 659 250 201 146 97 pint:PI0158|3end_hypothetical_protein_151298..151448_POSITIVE 649 240 194 146 100 pint:PI1076|3end_hypothetical_protein_999065..999215_POSITIVE 625 250 201 140 91 pint:PI0182|3end_hypothetical_protein_174277..174427_POSITIVE