Origin IGS: taacaacatcagagcattaaaataaggaaataaaagaggctgtgttgcaatatcgcaacacagccttaattgttagacgtccttcaagtatcataaagaaacaagagaaaaaacagttcagtaaaggtttattaggcaattgtttttctcttttgttctttaatagaaatgctgaaaacaaatttagcattgcaaagacataaactctatactgctcaatgacagataggggtgtggtttaacacgttcctaacaccaaagaaaaatgtcttcacctaatatttctaatcttcctaaggttcctataaaccttcaagccaacacagggaaatcgccttgattttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatacactggtgatgaacgtgttacgcagtaattacacttgtgaaaatttcttacacttctatcgcctactttcaacctacattataaaggcgcacagacgaaataaagtggcttta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taaagccactttatttcgtctgtgcgcctttataatgtaggttgaaagtaggcgatagaagtgtaagaaattttcacaagtgtaattactgcgtaacacgttcatcaccagtgtattacaaaacctattgtttcgcattccaaaagcggctgttttgcatggtaaaagcgtaagttttgcattacaaaagagccgctttcgcaacgtcaaatcgaaattattgttttcttaacgaattatctttacaaaatcaaggcgatttccctgtgttggcttgaaggtttataggaaccttaggaagattagaaatattaggtgaagacatttttctttggtgttaggaacgtgttaaaccacacccctatctgtcattgagcagtatagagtttatgtctttgcaatgctaaatttgttttcagcatttctattaaagaacaaaagagaaaaacaattgcctaataaacctttactgaactgttttttctcttgtttctttatgatacttgaaggacgtctaacaattaaggctgtgttgcgatattgcaacacagcctcttttatttccttattttaatgctctgatgttgtta Mask Tandem Repeat Region ================================================ taacaacatcagagcattaaaataaggaaataaaagaggctgtgttgcaatatcgcaacacagccttaattgttagacgtccttcaagtatcataaagaaacaagagaaaaaacagttcagtaaaggtttattaggcaattgtttttctcttttgttctttaatagaaatgctgaaaacaaatttagcattgcaaagacataaactctatactgctcaatgacagataggggtgtggtttaacacgttcctaacaccaaagaaaaatgtcttcacctaatatttctaatcttcctaaggttcctataaaccttcaagccaacacagggaaatcgccttgattttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatacactggtgatgaacgtgttacgcagtaattacacttgtgaaaatttcttacacttctatcgcctactttcaacctacattataaaggcgcacagacgaaataaagtggcttta Find is-nt database================================================ Query_seq: PI2056:PI2057|PI2056:PI2057:conserved hypothetical protein:conserved hypothetical protein; possible metal-dependent membrane protease:->->:2014489..2015078 590 taacaacatcagagcattaaaataaggaaataaaagaggctgtgttgcaatatcgcaacacagccttaattgttagacgtccttcaagtatcataaagaaacaagagaaaaaacagttcagtaaaggtttattaggcaattgtttttctcttttgttctttaatagaaatgctgaaaacaaatttagcattgcaaagacataaactctatactgctcaatgacagataggggtgtggtttaacacgttcctaacaccaaagaaaaatgtcttcacctaatatttctaatcttcctaaggttcctataaaccttcaagccaacacagggaaatcgccttgattttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatacactggtgatgaacgtgttacgcagtaattacacttgtgaaaatttcttacacttctatcgcctactttcaacctacattataaaggcgcacagacgaaataaagtggcttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI2056:PI2057|PI2056:PI2057:conserved hypothetical protein:conserved hypothetical protein; possible metal-dependent membrane protease:->->:2014489..2015078 590 taacaacatcagagcattaaaataaggaaataaaagaggctgtgttgcaatatcgcaacacagccttaattgttagacgtccttcaagtatcataaagaaacaagagaaaaaacagttcagtaaaggtttattaggcaattgtttttctcttttgttctttaatagaaatgctgaaaacaaatttagcattgcaaagacataaactctatactgctcaatgacagataggggtgtggtttaacacgttcctaacaccaaagaaaaatgtcttcacctaatatttctaatcttcctaaggttcctataaaccttcaagccaacacagggaaatcgccttgattttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatacactggtgatgaacgtgttacgcagtaattacacttgtgaaaatttcttacacttctatcgcctactttcaacctacattataaaggcgcacagacgaaataaagtggcttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI2056:PI2057|PI2056:PI2057:conserved hypothetical protein:conserved hypothetical protein; possible metal-dependent membrane protease:->->:2014489..2015078 590 taacaacatcagagcattaaaataaggaaataaaagaggctgtgttgcaatatcgcaacacagccttaattgttagacgtccttcaagtatcataaagaaacaagagaaaaaacagttcagtaaaggtttattaggcaattgtttttctcttttgttctttaatagaaatgctgaaaacaaatttagcattgcaaagacataaactctatactgctcaatgacagataggggtgtggtttaacacgttcctaacaccaaagaaaaatgtcttcacctaatatttctaatcttcctaaggttcctataaaccttcaagccaacacagggaaatcgccttgattttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatacactggtgatgaacgtgttacgcagtaattacacttgtgaaaatttcttacacttctatcgcctactttcaacctacattataaaggcgcacagacgaaataaagtggcttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taacaacatcagagcattaaaataaggaaataaaagaggctgtgttgcaatatcgcaacacagccttaattgttagacgtccttcaagtatcataaagaaacaagagaaaaaacagttcagtaaaggtttattaggcaattgtttttctcttttgttctttaatagaaatgctgaaaacaaatttagcattgcaaagacataaactctatactgctcaatgacagataggggtgtggtttaacacgttcctaacaccaaagaaaaatgtcttcacctaatatttctaatcttcctaaggttcctataaaccttcaagccaacacagggaaatcgccttgattttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatacactggtgatgaacgtgttacgcagtaattacacttgtgaaaatttcttacacttctatcgcctactttcaacctacattataaaggcgcacagacgaaataaagtggcttta Predict ORF larger than 30AA ================================================ Protein_Len: 57 Strand: + Start: 30 End: 200 ............................. M K E A V L Q Y R N T A L I V R R P S S I I K K Q E K K Q F S K G L L G N C F S L L F F N R N A E N K F S I A K T ...................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 381 End: 590 ............................................................................................................................................................................................................................................................................................................................................................................................ M T L R K R L F C N A K L T L L P C K T A A F G M R N N R F C N T L V M N V L R S N Y T C E N F L H F Y R L L S T Y I I Protein_Len: 43 Strand: - Start: 421 End: 549 .................................................................................................................................................................................................................................................................................................................................................................................................................................... A K V M C F L R K Q F A F C Y T K Y Y V P S S R T V C Y N C K H F N R V S R D G V K M ......................................... Protein_Len: 47 Strand: - Start: 362 End: 502 ......................................................................................................................................................................................................................................................................................................................................................................... S F L L K S K V N R F R S K Q L A F S V S K G H L V A A K P I R F L L N Q L V S T I F T N R M ........................................................................................ Protein_Len: 33 Strand: - Start: 316 End: 414 ........................................................................................................................................................................................................................................................................................................................... A L V P F D G Q N Q L S L E N L F C Y N R N S T A F A A R K Y H M ................................................................................................................................................................................ Protein_Len: 35 Strand: - Start: 306 End: 410 ................................................................................................................................................................................................................................................................................................................. L G E L W C L S I A K I K Y L Y N T L F V I I E I Q R Q S L P E K T M .................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 20 End: 220 ................... T N C Y R L V A K I T L R G E L I M F F C S F F C N L L P K N P L Q K E R K N K L L F A S F L N L M A F V Y V R Y Q E M .................................................................................................................................................................................................................................................................................................................................................................................. taacaacatcagagcattaaaataaggaaataaaagaggctgtgttgcaatatcgcaacacagccttaattgttagacgtccttcaagtatcataaagaaacaagagaaaaaacagttcagtaaaggtttattaggcaattgtttttctcttttgttctttaatagaaatgctgaaaacaaatttagcattgcaaagacataaactctatactgctcaatgacagataggggtgtggtttaacacgttcctaacaccaaagaaaaatgtcttcacctaatatttctaatcttcctaaggttcctataaaccttcaagccaacacagggaaatcgccttgattttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatacactggtgatgaacgtgttacgcagtaattacacttgtgaaaatttcttacacttctatcgcctactttcaacctacattataaaggcgcacagacgaaataaagtggcttta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taacaacatcagagcattaaaataaggaaataaaagaggctgtgttgcaatatcgcaacacagccttaattgttagacgtccttcaagtatcataaagaaacaagagaaaaaacagttcagtaaaggtttattaggcaattgtttttctcttttgttctttaatagaaatgctgaaaacaaatttagcattgcaaagacataaactctatactgctcaatgacagataggggtgtggtttaacacgttcctaacaccaaagaaaaatgtcttcacctaatatttctaatcttcctaaggttcctataaaccttcaagccaacacagggaaatcgccttgattttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatacactggtgatgaacgtgttacgcagtaattacacttgtgaaaatttcttacacttctatcgcctactttcaacctacattataaaggcgcacagacgaaataaagtggcttta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 73 HP_score: -8.3 Tail_Score: -3.64259 Start: 34 End: 69 Full_Region: AAAATAAGGAAATAA AAGAGGCTGTGTTGC AATATC GCAACACAGCCTTAA TTGTTAGACGTCCTT .................................AAGAGGCTGTGTTGCAATATCGCAACACAGCCTTAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -13.8 Tail_Score: -5.03713 Start: 36 End: 67 Full_Region: ggacgtctaacaatt aaggctgtgttgcg atat tgcaacacagcctc ttttatttccttatt ...................................aaggctgtgttgcgatattgcaacacagcctc........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -15.7 Tail_Score: -3.53712 Start: 38 End: 65 Full_Region: TAAGGAAATAAAAGA GGCTGTGTTGC AATATC GCAACACAGCC TTAATTGTTAGACGT .....................................GGCTGTGTTGCAATATCGCAACACAGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 100 HP_score: -16.4 Tail_Score: -4.11369 Start: 38 End: 65 Full_Region: acgtctaacaattaa ggctgtgttgcg atat tgcaacacagcc tcttttatttcctta .....................................ggctgtgttgcgatattgcaacacagcc............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 45 HP_score: -2.5 Tail_Score: -3.22906 Start: 324 End: 339 Full_Region: ACCTTCAAGCCAACA CAGGG AAATCG CCTTG ATTTTGTAAAGATAA ...................................................................................................................................................................................................................................................................................................................................CAGGGAAATCGCCTTG........................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 64 HP_score: -4.8 Tail_Score: -4.13767 Start: 395 End: 445 Full_Region: TTTGACGTTGCGAAA GCGGCTCTTTTGTAATGCAAAA CTTACGC TTTTACCATGCAAAACAGCCGC TTTTGGAATGCGAAA ..........................................................................................................................................................................................................................................................................................................................................................................................................GCGGCTCTTTTGTAATGCAAAACTTACGCTTTTACCATGCAAAACAGCCGC................................................................................................................................................. TransTerm Strand: - Conf: 57 HP_score: -4.8 Tail_Score: -3.54424 Start: 395 End: 445 Full_Region: tttcgcattccaaaa gcggctgttttgcatggtaaaa gcgtaag ttttgcattacaaaagagccgc tttcgcaacgtcaaa ..........................................................................................................................................................................................................................................................................................................................................................................................................gcggctgttttgcatggtaaaagcgtaagttttgcattacaaaagagccgc................................................................................................................................................. Find igs database================================================ Query_seq: PI2056:PI2057|PI2056:PI2057:conserved hypothetical protein:conserved hypothetical protein; possible metal-dependent membrane protease:->->:2014489..2015078 590 taacaacatcagagcattaaaataaggaaataaaagaggctgtgttgcaatatcgcaacacagccttaattgttagacgtccttcaagtatcataaagaaacaagagaaaaaacagttcagtaaaggtttattaggcaattgtttttctcttttgttctttaatagaaatgctgaaaacaaatttagcattgcaaagacataaactctatactgctcaatgacagataggggtgtggtttaacacgttcctaacaccaaagaaaaatgtcttcacctaatatttctaatcttcctaaggttcctataaaccttcaagccaacacagggaaatcgccttgattttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatacactggtgatgaacgtgttacgcagtaattacacttgtgaaaatttcttacacttctatcgcctactttcaacctacattataaaggcgcacagacgaaataaagtggcttta Intra-Species Hit: Count: 35 Min: 1 Max: 590 Len: 590 Subject: pint_PI2056_PI2057|conserved hypothetical protein:conserved hypothetical protein; possible metal-dependent membrane protease|POSITIVE:POSITIVE|[2014489,2015078]|590 HSP 1 e-value: 0.0 bit: 1170.0 Len: 590 Query Start:1 Query End:590 Subject Strand: POSITIVE Subject Start: 1 Subject End: 590 taacaacatcagagcattaaaataaggaaataaaagaggctgtgttgcaatatcgcaacacagccttaattgttagacgtccttcaagtatcataaagaaacaagagaaaaaacagttcagtaaaggtttattaggcaattgtttttctcttttgttctttaatagaaatgctgaaaacaaatttagcattgcaaagacataaactctatactgctcaatgacagataggggtgtggtttaacacgttcctaacaccaaagaaaaatgtcttcacctaatatttctaatcttcctaaggttcctataaaccttcaagccaacacagggaaatcgccttgattttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatacactggtgatgaacgtgttacgcagtaattacacttgtgaaaatttcttacacttctatcgcctactttcaacctacattataaaggcgcacagacgaaataaagtggcttta taacaacatcagagcattaaaataaggaaataaaagaggctgtgttgcaatatcgcaacacagccttaattgttagacgtccttcaagtatcataaagaaacaagagaaaaaacagttcagtaaaggtttattaggcaattgtttttctcttttgttctttaatagaaatgctgaaaacaaatttagcattgcaaagacataaactctatactgctcaatgacagataggggtgtggtttaacacgttcctaacaccaaagaaaaatgtcttcacctaatatttctaatcttcctaaggttcctataaaccttcaagccaacacagggaaatcgccttgattttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatacactggtgatgaacgtgttacgcagtaattacacttgtgaaaatttcttacacttctatcgcctactttcaacctacattataaaggcgcacagacgaaataaagtggcttta Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 6.0E-80 bit: 299.0 Len: 247 Query Start:243 Query End:489 Subject Strand: POSITIVE Subject Start: 57 Subject End: 303 ..................................................................................................................................................................................................................................................cacgttcctaacaccaaagaaaaatgtcttcacctaatatttctaatcttcctaaggttcctataaaccttcaagccaacacagggaaatcgccttgattttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatacactggtgatga..................................................................................................... ..................................................................................................................................................................................................................................................cacgttcctgacaccgaggaaaaatgttttcacatagtatttctaatcttcctaaggttcctataatcctttaagccaacacgtgaaaatcgcttcgattttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatga..................................................................................................... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 4.0E-78 bit: 293.0 Len: 310 Query Start:166 Query End:475 Subject Strand: NEGATIVE Subject Start: 328 Subject End: 637 .....................................................................................................................................................................gaaatgctgaaaacaaatttagcattgcaaagacataaactctatactgct-caatga-cagataggggtgtggtttaacacgttcctaacaccaaagaaaaatgtcttcacctaatatttctaatcttcctaaggttcctataaaccttcaagccaacacagggaaatcgccttgattttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaa................................................................................................................... .....................................................................................................................................................................gaaatgctgaaaacaactttagtatttcaaaaacataaattttata-tcctgcaatgaacagataggag-gtgatttatcacgttcttgtcacccaagaaaaatgttttcacctaatatttctaagcttcctaaggtttctataaacctttaagccaacacgtgaaaatcgctttggttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagcagctcttttgcaacgcaaaacctatgcttttaccgtgcaaaacagccgcttttaggatgcaaaacaataggttttgtaa................................................................................................................... Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 1.0E-50 bit: 202.0 Len: 138 Query Start:334 Query End:471 Subject Strand: POSITIVE Subject Start: 62 Subject End: 199 .............................................................................................................................................................................................................................................................................................................................................gccttgattttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggtttt....................................................................................................................... .............................................................................................................................................................................................................................................................................................................................................gccttgattctgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt....................................................................................................................... Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 9.0E-39 bit: 163.0 Len: 106 Query Start:371 Query End:476 Subject Strand: POSITIVE Subject Start: 143 Subject End: 248 ..................................................................................................................................................................................................................................................................................................................................................................................taatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaat.................................................................................................................. ..................................................................................................................................................................................................................................................................................................................................................................................taatttcgatttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat.................................................................................................................. Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 1.0E-37 bit: 159.0 Len: 112 Query Start:364 Query End:475 Subject Strand: NEGATIVE Subject Start: 37 Subject End: 148 ...........................................................................................................................................................................................................................................................................................................................................................................aaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaa................................................................................................................... ...........................................................................................................................................................................................................................................................................................................................................................................aaaacaataatttcgttttgacgttgcgaaagcggctcttttacaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggttttgtaa................................................................................................................... Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 1.0E-37 bit: 159.0 Len: 136 Query Start:341 Query End:476 Subject Strand: POSITIVE Subject Start: 10 Subject End: 145 ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaat.................................................................................................................. ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaat.................................................................................................................. Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 1.0E-37 bit: 159.0 Len: 132 Query Start:341 Query End:472 Subject Strand: NEGATIVE Subject Start: 87 Subject End: 218 ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttg...................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagattatttctttagaaaatggtaatttcgatttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg...................................................................................................................... Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 5.0E-37 bit: 157.0 Len: 103 Query Start:380 Query End:482 Subject Strand: POSITIVE Subject Start: 253 Subject End: 355 ...........................................................................................................................................................................................................................................................................................................................................................................................tttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatacactg............................................................................................................ ...........................................................................................................................................................................................................................................................................................................................................................................................tttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactg............................................................................................................ Subject: pint_PI0694_PI0695|Na+/dicarboxylate or sulfate symporter:xanthine/uracil permease family protein|POSITIVE:POSITIVE|[631238,631552]|315 HSP 1 e-value: 3.0E-35 bit: 151.0 Len: 140 Query Start:333 Query End:472 Subject Strand: POSITIVE Subject Start: 80 Subject End: 219 ............................................................................................................................................................................................................................................................................................................................................cgccttgattttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttg...................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................cgccttggttttgtaaagataattccgacggaaaacggtaatttcgatttgacactgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggttttg...................................................................................................................... Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 3.0E-35 bit: 151.0 Len: 143 Query Start:329 Query End:471 Subject Strand: POSITIVE Subject Start: 203 Subject End: 345 ........................................................................................................................................................................................................................................................................................................................................aaatcgccttgattttgtaaagataatt-cgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggtttt....................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................aaatcgcctcggttttgtaaagataatttcgctga-aaaacgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt....................................................................................................................... Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 1.0E-34 bit: 149.0 Len: 107 Query Start:370 Query End:476 Subject Strand: NEGATIVE Subject Start: 382 Subject End: 488 .................................................................................................................................................................................................................................................................................................................................................................................ataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaat.................................................................................................................. .................................................................................................................................................................................................................................................................................................................................................................................ataatttcgatttggcattgcgaaagcggctgttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat.................................................................................................................. Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 5.0E-34 bit: 147.0 Len: 138 Query Start:341 Query End:478 Subject Strand: POSITIVE Subject Start: 91 Subject End: 228 ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatac................................................................................................................ ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatac................................................................................................................ Subject: pint_PI1803_PI1804|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1737852,1738248]|397 HSP 1 e-value: 3.0E-32 bit: 141.0 Len: 131 Query Start:341 Query End:471 Subject Strand: POSITIVE Subject Start: 266 Subject End: 396 ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggtttt....................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagattattccgaaagaaaacggtaatttcgatttggcattgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttacaatgcaaaacaataggtttt....................................................................................................................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 8.0E-30 bit: 133.0 Len: 139 Query Start:341 Query End:479 Subject Strand: POSITIVE Subject Start: 146 Subject End: 284 ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaataca............................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaataca............................................................................................................... Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 3.0E-29 bit: 131.0 Len: 137 Query Start:340 Query End:476 Subject Strand: POSITIVE Subject Start: 110 Subject End: 246 ...................................................................................................................................................................................................................................................................................................................................................attttgtaaagataattc-gttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaat.................................................................................................................. ...................................................................................................................................................................................................................................................................................................................................................attttgtaaagataattctgttaa-aaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttataat.................................................................................................................. Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 3.0E-29 bit: 131.0 Len: 106 Query Start:370 Query End:475 Subject Strand: NEGATIVE Subject Start: 407 Subject End: 512 .................................................................................................................................................................................................................................................................................................................................................................................ataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaa................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................ataatttcgttttgacgttgcgaaagcggctgttttgcgaggtaaaacctacgcttttgccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaa................................................................................................................... Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 1.0E-25 bit: 119.0 Len: 108 Query Start:380 Query End:487 Subject Strand: NEGATIVE Subject Start: 239 Subject End: 346 ...........................................................................................................................................................................................................................................................................................................................................................................................tttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatacactggtgat....................................................................................................... ...........................................................................................................................................................................................................................................................................................................................................................................................tttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccacttttggaacgcaaaacaataggttttgtaacacactgatgat....................................................................................................... Subject: pint_PI0195_PI0196|epimerase/reductase:hypothetical protein|POSITIVE:POSITIVE|[188263,188574]|312 HSP 1 e-value: 7.0E-24 bit: 113.0 Len: 141 Query Start:344 Query End:484 Subject Strand: POSITIVE Subject Start: 148 Subject End: 288 .......................................................................................................................................................................................................................................................................................................................................................tgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatacactggt.......................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................tgtaaaaataattcgtagagaaaatgacaatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatacgctggt.......................................................................................................... Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 4.0E-22 bit: 107.0 Len: 142 Query Start:341 Query End:482 Subject Strand: NEGATIVE Subject Start: 222 Subject End: 362 ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatacactg............................................................................................................ ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagataattcattga-aaaacgataatttcgatttggcattgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacacttttggaatgcaaaacaataggttttataatacactg............................................................................................................ Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 2.0E-21 bit: 105.0 Len: 105 Query Start:371 Query End:475 Subject Strand: NEGATIVE Subject Start: 53 Subject End: 157 ..................................................................................................................................................................................................................................................................................................................................................................................taatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaa................................................................................................................... ..................................................................................................................................................................................................................................................................................................................................................................................taatttcgatttggcgttgcgaaagcggctgttttgcagcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaa................................................................................................................... Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 1.0E-19 bit: 99.6 Len: 138 Query Start:339 Query End:476 Subject Strand: POSITIVE Subject Start: 139 Subject End: 276 ..................................................................................................................................................................................................................................................................................................................................................gattttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaat.................................................................................................................. ..................................................................................................................................................................................................................................................................................................................................................gattttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataat.................................................................................................................. Subject: pint_PI1915_PI1916|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1859967,1860350]|384 HSP 1 e-value: 1.0E-19 bit: 99.6 Len: 148 Query Start:329 Query End:476 Subject Strand: POSITIVE Subject Start: 102 Subject End: 249 ........................................................................................................................................................................................................................................................................................................................................aaatcgccttgattttgtaaagataattcgttaagaaaa-caataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaa-cttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaat.................................................................................................................. ........................................................................................................................................................................................................................................................................................................................................aaatcgccttgattttgtaaaaataattc-tgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataat.................................................................................................................. HSP 2 e-value: 2.0E-9 bit: 65.9 Len: 57 Query Start:392 Query End:448 Subject Strand: NEGATIVE Subject Start: 165 Subject End: 221 .......................................................................................................................................................................................................................................................................................................................................................................................................aaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttt.............................................................................................................................................. .......................................................................................................................................................................................................................................................................................................................................................................................................aaagcggctgttttgcaacgtaaaacatacgcttttaccgtgcaaaacagccgcttt.............................................................................................................................................. Subject: pint_PI1728_PI1729|ATP-dependent Clp protease, proteolytic subunit:FKBP-type peptidyl-prolyl cis-trans isomerase, trigger factor|POSITIVE:POSITIVE|[1647719,1648555]|837 HSP 1 e-value: 1.0E-19 bit: 99.6 Len: 142 Query Start:341 Query End:482 Subject Strand: NEGATIVE Subject Start: 405 Subject End: 546 ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatacactg............................................................................................................ ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagataattcgttgagaaaacggtaatttcgatttgacgttgcaaaagcgtaggttttgcaaggcaaaagagccgcttttaccgtgcaaaagcggctcttttacaatgcgaaacaataggttttataacacactg............................................................................................................ Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 2.0E-18 bit: 95.6 Len: 132 Query Start:341 Query End:472 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 237 ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttg...................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagattattcgtaagaaaaatgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacagccgcttttgccgtgtaaaacctacgcttttggaatgcaaaacaataggttttg...................................................................................................................... Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 2.0E-18 bit: 95.6 Len: 132 Query Start:341 Query End:472 Subject Strand: POSITIVE Subject Start: 144 Subject End: 275 ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttg...................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagataattcgttgaaaaaatgataatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttg...................................................................................................................... Subject: pint_PI1958_PI1959|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1917430,1917847]|418 HSP 1 e-value: 7.0E-18 bit: 93.7 Len: 138 Query Start:340 Query End:477 Subject Strand: POSITIVE Subject Start: 181 Subject End: 318 ...................................................................................................................................................................................................................................................................................................................................................attttgtaaagataattc-gttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaata................................................................................................................. ...................................................................................................................................................................................................................................................................................................................................................attttgtaaagataattctgataa-aaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataata................................................................................................................. Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 7.0E-18 bit: 93.7 Len: 135 Query Start:337 Query End:471 Subject Strand: NEGATIVE Subject Start: 174 Subject End: 308 ................................................................................................................................................................................................................................................................................................................................................ttgattttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggtttt....................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................ttgattttgtaaagataattcggagggaaaatgataatttcgatttgacgttgcgaaagcgtatgttttgcgatgcaaaagagccgcttttaccgtgcaaaacctacgcttttacaatgcaaaacaataggtttt....................................................................................................................... Subject: pint_PI1981_PI1982|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1938199,1938578]|380 HSP 1 e-value: 3.0E-17 bit: 91.7 Len: 137 Query Start:341 Query End:477 Subject Strand: POSITIVE Subject Start: 144 Subject End: 280 ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagataattc-gttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaata................................................................................................................. ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagataattctgataa-aaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataata................................................................................................................. Subject: pint_PI0854_PI0855|MiaB-like tRNA modifying enzyme:hypothetical protein|POSITIVE:POSITIVE|[788060,789233]|1174 HSP 1 e-value: 4.0E-16 bit: 87.7 Len: 108 Query Start:370 Query End:477 Subject Strand: POSITIVE Subject Start: 770 Subject End: 877 .................................................................................................................................................................................................................................................................................................................................................................................ataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaata................................................................................................................. .................................................................................................................................................................................................................................................................................................................................................................................ataatttcgatttggcgttgcgaaagcgtaggttttgcaacgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttataata................................................................................................................. Subject: pint_PI1441_PI1442|hypothetical protein:radical-activating enzyme (pyruvate-formate lyase-activating enzyme)|POSITIVE:POSITIVE|[1363734,1364088]|355 HSP 1 e-value: 2.0E-15 bit: 85.7 Len: 135 Query Start:341 Query End:475 Subject Strand: NEGATIVE Subject Start: 82 Subject End: 216 ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaa................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagataatttacaaggaaaacggtattttcgatttgacgttgcgaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttgtaa................................................................................................................... Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 1.0E-13 bit: 79.8 Len: 100 Query Start:380 Query End:479 Subject Strand: POSITIVE Subject Start: 226 Subject End: 325 ...........................................................................................................................................................................................................................................................................................................................................................................................tttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaataca............................................................................................................... ...........................................................................................................................................................................................................................................................................................................................................................................................tttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaataca............................................................................................................... Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 1.0E-13 bit: 79.8 Len: 132 Query Start:341 Query End:472 Subject Strand: POSITIVE Subject Start: 141 Subject End: 272 ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttg...................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................ttttgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttg...................................................................................................................... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 1.0E-10 bit: 69.9 Len: 142 Query Start:335 Query End:476 Subject Strand: POSITIVE Subject Start: 185 Subject End: 326 ..............................................................................................................................................................................................................................................................................................................................................ccttgattttgtaaagataatt-cgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaat.................................................................................................................. ..............................................................................................................................................................................................................................................................................................................................................ccttgattttgtaaagataatttcgttaa-aaagtgataactgcactttgacgttgcgaaagcggctgttttacgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttaggacgcaaaacaatagattttgtaat.................................................................................................................. Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 4.0E-10 bit: 67.9 Len: 110 Query Start:380 Query End:489 Subject Strand: POSITIVE Subject Start: 150 Subject End: 259 ...........................................................................................................................................................................................................................................................................................................................................................................................tttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatacactggtgatga..................................................................................................... ...........................................................................................................................................................................................................................................................................................................................................................................................tttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatga..................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAACAACAUCAGAGCAUUAAAAUAAGGAAAUAAAAGAGGCUGUGUUGCAAUAUCGCAACACAGCCUUAAUUGUUAGACGUCCUUCAAGUAUCAUAAAGAAACAAGAGAAAAAACAGUUCAGUAAAGGUUUAUUAGGCAAUUGUUUUUCUCUUUUGUUCUUUAAUAGAAAUGCUGAAAACAAAUUUAGCAUUGCAAAGACAUAAACUCUAUACUGCUCAAUGACAGAUAGGGGUGUGGUUUAACACGUUCCUAACACCAAAGAAAAAUGUCUUCACCUAAUAUUUCUAAUCUUCCUAAGGUUCCUAUAAACCUUCAAGCCAACACAGGGAAAUCGCCUUGAUUUUGUAAAGAUAAUUCGUUAAGAAAACAAUAAUUUCGAUUUGACGUUGCGAAAGCGGCUCUUUUGUAAUGCAAAACUUACGCUUUUACCAUGCAAAACAGCCGCUUUUGGAAUGCGAAACAAUAGGUUUUGUAAUACACUGGUGAUGAACGUGUUACGCAGUAAUUACACUUGUGAAAAUUUCUUACACUUCUAUCGCCUACUUUCAACCUACAUUAUAAAGGCGCACAGACGAAAUAAAGUGGCUUUA ...........((((........((((((((((..(((((((((((((......)))))))))))))..))))).....)))))..(((((..(((((((.((((((((((((((((..(((((....)))))..))...))))))).))))))))))))))...(.(((((((((......))))))))).)...............))))))))).......((((((((((((((.((((((((((....(((((......((((((.((..............(((((...((((((......))))))..........(((((......)))))........)))))..(((.....)))............))...)))))).(((((((((((.(((((((.((.((((.......))))..))))))))).)))))))))))...((((((((.....))))))))......)))))..)))))))))).)).....((((....))))........)))))))))))).......................(((((.(((............)))))))). (-157.10) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAGCCACUUUAUUUCGUCUGUGCGCCUUUAUAAUGUAGGUUGAAAGUAGGCGAUAGAAGUGUAAGAAAUUUUCACAAGUGUAAUUACUGCGUAACACGUUCAUCACCAGUGUAUUACAAAACCUAUUGUUUCGCAUUCCAAAAGCGGCUGUUUUGCAUGGUAAAAGCGUAAGUUUUGCAUUACAAAAGAGCCGCUUUCGCAACGUCAAAUCGAAAUUAUUGUUUUCUUAACGAAUUAUCUUUACAAAAUCAAGGCGAUUUCCCUGUGUUGGCUUGAAGGUUUAUAGGAACCUUAGGAAGAUUAGAAAUAUUAGGUGAAGACAUUUUUCUUUGGUGUUAGGAACGUGUUAAACCACACCCCUAUCUGUCAUUGAGCAGUAUAGAGUUUAUGUCUUUGCAAUGCUAAAUUUGUUUUCAGCAUUUCUAUUAAAGAACAAAAGAGAAAAACAAUUGCCUAAUAAACCUUUACUGAACUGUUUUUUCUCUUGUUUCUUUAUGAUACUUGAAGGACGUCUAACAAUUAAGGCUGUGUUGCGAUAUUGCAACACAGCCUCUUUUAUUUCCUUAUUUUAAUGCUCUGAUGUUGUUA ............((..((((.(.(((...(((.((((.(((.((((((((((((.(((((((((..(((((.........(((((..((.((.((((((((((..(((((((((........(((((.((((((........(((((((((.(((((....((((((.(....)))))))....))))).))))))))).......................(((((((((...................(((((.((((........)))).))))).(((((....))))).)))))))))..)))))).)))))....)))).......)))))....))))))))))..........((((((((......)))).)))).))....))..)))))...........)))))..))))))))).(((((((...((((((((((((......(((.......)))......)).))))))))))..)))))))..............)))))).......(((((((((((((....)))))))))))))))))))...))))))).)))))).).))))..)).. (-155.36) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 876 430 381 189 140 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 809 470 421 98 49 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 809 470 421 55 6 pint:PI1905|5end_hypothetical_protein_1847628..1847858_POSITIVE 809 470 421 98 49 pint:PI1346|5end_hypothetical_protein_1260814..1261044_POSITIVE 809 470 421 59 10 pint:PI1339|5end_hypothetical_protein_1256671..1256901_POSITIVE 809 470 421 86 37 pint:PI1129|5end_hypothetical_protein_1055377..1055607_POSITIVE 809 470 421 224 175 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 809 470 421 59 10 pint:PI0104|5end_hypothetical_protein_99105..99335_POSITIVE 809 470 421 70 21 pint:PI0061|5end_hypothetical_protein_60500..60730_POSITIVE 809 470 421 147 98 pint:PI0055|5end_hypothetical_protein_54815..55045_POSITIVE 809 470 421 59 10 pint:PI0053|5end_hypothetical_protein_54727..54957_POSITIVE 809 470 421 70 21 pint:PI0004|5end_hypothetical_protein_6199..6429_POSITIVE 802 430 381 58 9 pint:PI1567|5end_hypothetical_protein_1489229..1489459_POSITIVE 783 470 421 98 49 pint:PI2002|5end_hypothetical_protein_1960662..1960892_POSITIVE 782 430 381 200 151 pint:PI1486|5end_alginate_O-acetylation_protein_1405507..1405737_POSITIVE 767 430 381 58 9 pint:PI1076|5end_hypothetical_protein_998893..999123_POSITIVE 760 430 381 58 9 pint:PI1601|5end_hypothetical_protein_1530282..1530512_POSITIVE 758 430 381 219 170 pint:PI2003|5end_hypothetical_protein_1960823..1961053_POSITIVE 757 470 421 59 10 pint:PI0099|5end_hypothetical_protein_95530..95760_POSITIVE 738 430 381 58 9 pint:PI1829|5end_hypothetical_protein_1769255..1769485_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 876 430 381 140 91 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 813 430 381 100 51 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 809 470 421 140 91 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 809 470 421 53 4 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 809 470 421 53 4 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE 809 470 421 81 32 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 801 430 381 140 91 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 796 430 381 114 66 pint:PI1356|3end_hypothetical_protein_1273340..1273490_POSITIVE 793 430 381 140 91 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 776 479 432 56 9 pint:PI0669|3end_hypothetical_protein_611147..611297_POSITIVE 767 430 381 150 101 pint:PI1076|3end_hypothetical_protein_999065..999215_POSITIVE 760 430 381 150 101 pint:PI1601|3end_hypothetical_protein_1530454..1530604_POSITIVE 739 430 381 144 95 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 723 455 411 66 22 pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE 703 470 422 49 1 pint:PI1051|3end_hypothetical_protein_970228..970378_POSITIVE 666 420 371 151 102 pint:PI1905|3end_hypothetical_protein_1847854..1848004_POSITIVE 666 419 371 151 103 pint:PI1829|3end_hypothetical_protein_1769439..1769589_POSITIVE 664 430 381 140 91 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 654 478 438 41 1 pint:PI1813|3end_hypothetical_protein_1753086..1753236_POSITIVE 653 360 312 146 97 pint:PI2153|3end_hypothetical_protein_2099630..2099780_POSITIVE