Origin IGS: gctgtggttccattcctacttgacggactatttaacgattgattttagatagtttacataactccaagtcccgcaaactcacaacgagtttgcgggatttttgtttcttgccctacacgtgggttcagcattagaaagcaggctaaacaagcaattaggtagctattctttcggcaagcctcataataaaatagtgagagattttcaatccgactttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatgaacagatggttaggcaacagttaccctt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aagggtaactgttgcctaaccatctgttcatcagtgtattacaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcatcgtcaaaacgcagttatcactttttaagagaataatctttacaaagtcggattgaaaatctctcactattttattatgaggcttgccgaaagaatagctacctaattgcttgtttagcctgctttctaatgctgaacccacgtgtagggcaagaaacaaaaatcccgcaaactcgttgtgagtttgcgggacttggagttatgtaaactatctaaaatcaatcgttaaatagtccgtcaagtaggaatggaaccacagc Mask Tandem Repeat Region ================================================ gctgtggttccattcctacttgacggactatttaacgattgattttagatagtttacataactccaagtcccgcaaactcacaacgagtttgcgggatttttgtttcttgccctacacgtgggttcagcattagaaagcaggctaaacaagcaattaggtagctattctttcggcaagcctcataataaaatagtgagagattttcaatccgactttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataggttttgtaatacactgatgaacagatggttaggcaacagttaccctt Find is-nt database================================================ Query_seq: PI2045:PI2046|PI2045:PI2046:hypothetical protein:hypothetical protein:->->:1998784..1999169 386 gctgtggttccattcctacttgacggactatttaacgattgattttagatagtttacataactccaagtcccgcaaactcacaacgagtttgcgggatttttgtttcttgccctacacgtgggttcagcattagaaagcaggctaaacaagcaattaggtagctattctttcggcaagcctcataataaaatagtgagagattttcaatccgactttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatgaacagatggttaggcaacagttaccctt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI2045:PI2046|PI2045:PI2046:hypothetical protein:hypothetical protein:->->:1998784..1999169 386 gctgtggttccattcctacttgacggactatttaacgattgattttagatagtttacataactccaagtcccgcaaactcacaacgagtttgcgggatttttgtttcttgccctacacgtgggttcagcattagaaagcaggctaaacaagcaattaggtagctattctttcggcaagcctcataataaaatagtgagagattttcaatccgactttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatgaacagatggttaggcaacagttaccctt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI2045:PI2046|PI2045:PI2046:hypothetical protein:hypothetical protein:->->:1998784..1999169 386 gctgtggttccattcctacttgacggactatttaacgattgattttagatagtttacataactccaagtcccgcaaactcacaacgagtttgcgggatttttgtttcttgccctacacgtgggttcagcattagaaagcaggctaaacaagcaattaggtagctattctttcggcaagcctcataataaaatagtgagagattttcaatccgactttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatgaacagatggttaggcaacagttaccctt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gctgtggttccattcctacttgacggactatttaacgattgattttagatagtttacataactccaagtcccgcaaactcacaacgagtttgcgggatttttgtttcttgccctacacgtgggttcagcattagaaagcaggctaaacaagcaattaggtagctattctttcggcaagcctcataataaaatagtgagagattttcaatccgactttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatgaacagatggttaggcaacagttaccctt Predict ORF larger than 30AA ================================================ Protein_Len: 31 Strand: + Start: 39 End: 131 ...................................... M I L D S L H N S K S R K L T T S L R D F C F L P Y T W V Q H ............................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: + Start: 49 End: 159 ................................................ M V Y I T P S P A N S Q R V C G I F V S C P T R G F S I R K Q A K Q A I R ................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 247 End: 336 ...................................................................................................................................................................................................................................................... M R F D D A K A A L L R C K T Y A F T V Q N S R F W N A K Q .................................................. Protein_Len: 60 Strand: + Start: 101 End: 385 .................................................................................................... M F L A L H V G S A L E S R L N K Q L G S Y S F G K P H N K I V R D F Q S D F V K I I L L K S D N C V L T M R K R L F C . Protein_Len: 57 Strand: - Start: 208 End: 378 ............................................................................................................................................................................................................... D S K T F I I R K F L S L Q T K V I R F R S K Q S A F G V S K G H L V A A K P I C F L L N Q L V S I F L H N P L M ........ Protein_Len: 51 Strand: - Start: 57 End: 209 ........................................................ M V G L G A F E C R T Q P I K T E Q G V R P N L M L F C A L C A I L Y S N K R C A E Y Y F L S L N E M ................................................................................................................................................................................. gctgtggttccattcctacttgacggactatttaacgattgattttagatagtttacataactccaagtcccgcaaactcacaacgagtttgcgggatttttgtttcttgccctacacgtgggttcagcattagaaagcaggctaaacaagcaattaggtagctattctttcggcaagcctcataataaaatagtgagagattttcaatccgactttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatgaacagatggttaggcaacagttaccctt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gctgtggttccattcctacttgacggactatttaacgattgattttagatagtttacataactccaagtcccgcaaactcacaacgagtttgcgggatttttgtttcttgccctacacgtgggttcagcattagaaagcaggctaaacaagcaattaggtagctattctttcggcaagcctcataataaaatagtgagagattttcaatccgactttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatgaacagatggttaggcaacagttaccctt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -17.6 Tail_Score: -5.47159 Start: 69 End: 97 Full_Region: TTACATAACTCCAAG TCCCGCAAACTC ACAAC GAGTTTGCGGGA TTTTTGTTTCTTGCC ....................................................................TCCCGCAAACTCACAACGAGTTTGCGGGA................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 83 HP_score: -9.0 Tail_Score: -4.13767 Start: 268 End: 318 Full_Region: TTTGACGATGCGAAA GCGGCTCTTTTGCGATGCAAAACC TAC GCTTTTACCGTGCAAAACAGCCGC TTTTGGAATGCAAAA ...........................................................................................................................................................................................................................................................................GCGGCTCTTTTGCGATGCAAAACCTACGCTTTTACCGTGCAAAACAGCCGC.................................................................... TransTerm Strand: - Conf: 76 HP_score: -9.0 Tail_Score: -3.62096 Start: 268 End: 318 Full_Region: ttttgcattccaaaa gcggctgttttgcacggtaaaagc gta ggttttgcatcgcaaaagagccgc tttcgcatcgtcaaa ...........................................................................................................................................................................................................................................................................gcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgc.................................................................... Find igs database================================================ Query_seq: PI2045:PI2046|PI2045:PI2046:hypothetical protein:hypothetical protein:->->:1998784..1999169 386 gctgtggttccattcctacttgacggactatttaacgattgattttagatagtttacataactccaagtcccgcaaactcacaacgagtttgcgggatttttgtttcttgccctacacgtgggttcagcattagaaagcaggctaaacaagcaattaggtagctattctttcggcaagcctcataataaaatagtgagagattttcaatccgactttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatgaacagatggttaggcaacagttaccctt Intra-Species Hit: Count: 44 Min: 1 Max: 386 Len: 386 Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 0.0 bit: 765.0 Len: 386 Query Start:1 Query End:386 Subject Strand: POSITIVE Subject Start: 1 Subject End: 386 gctgtggttccattcctacttgacggactatttaacgattgattttagatagtttacataactccaagtcccgcaaactcacaacgagtttgcgggatttttgtttcttgccctacacgtgggttcagcattagaaagcaggctaaacaagcaattaggtagctattctttcggcaagcctcataataaaatagtgagagattttcaatccgactttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatgaacagatggttaggcaacagttaccctt gctgtggttccattcctacttgacggactatttaacgattgattttagatagtttacataactccaagtcccgcaaactcacaacgagtttgcgggatttttgtttcttgccctacacgtgggttcagcattagaaagcaggctaaacaagcaattaggtagctattctttcggcaagcctcataataaaatagtgagagattttcaatccgactttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatgaacagatggttaggcaacagttaccctt Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 3.0E-59 bit: 230.0 Len: 144 Query Start:215 Query End:358 Subject Strand: POSITIVE Subject Start: 51 Subject End: 194 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatg............................ ......................................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatg............................ Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 4.0E-58 bit: 226.0 Len: 146 Query Start:214 Query End:359 Subject Strand: NEGATIVE Subject Start: 240 Subject End: 385 .....................................................................................................................................................................................................................ctttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatga........................... .....................................................................................................................................................................................................................ctttgtaaagataattctcttaaaaagtgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccacttttggaacgcaaaacaataggttttgtaacacactgatga........................... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 7.0E-57 bit: 222.0 Len: 144 Query Start:214 Query End:357 Subject Strand: POSITIVE Subject Start: 59 Subject End: 202 .....................................................................................................................................................................................................................ctttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgat............................. .....................................................................................................................................................................................................................ctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgat............................. Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 1.0E-55 bit: 218.0 Len: 134 Query Start:215 Query End:348 Subject Strand: NEGATIVE Subject Start: 148 Subject End: 281 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaa...................................... ......................................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgtaaaacaataggttttgtaa...................................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 1.0E-55 bit: 218.0 Len: 138 Query Start:215 Query End:352 Subject Strand: POSITIVE Subject Start: 147 Subject End: 284 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaataca.................................. ......................................................................................................................................................................................................................tttgtaaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaataca.................................. Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 4.0E-55 bit: 216.0 Len: 137 Query Start:213 Query End:349 Subject Strand: POSITIVE Subject Start: 478 Subject End: 614 ....................................................................................................................................................................................................................actttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat..................................... ....................................................................................................................................................................................................................actttgtaaagataattctgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat..................................... Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 7.0E-54 bit: 212.0 Len: 131 Query Start:215 Query End:345 Subject Strand: NEGATIVE Subject Start: 304 Subject End: 434 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg......................................... ......................................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttgacgttgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg......................................... Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 7.0E-54 bit: 212.0 Len: 131 Query Start:215 Query End:345 Subject Strand: POSITIVE Subject Start: 115 Subject End: 245 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg......................................... ......................................................................................................................................................................................................................tttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg......................................... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 7.0E-54 bit: 212.0 Len: 135 Query Start:215 Query End:349 Subject Strand: POSITIVE Subject Start: 167 Subject End: 301 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat..................................... ......................................................................................................................................................................................................................tttgtaaagataattctcttaaaaattgataactgcgttttgacattgcgaaagcggctgttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat..................................... Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 1.0E-52 bit: 208.0 Len: 137 Query Start:215 Query End:351 Subject Strand: NEGATIVE Subject Start: 88 Subject End: 224 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatac................................... ......................................................................................................................................................................................................................tttgtaaagataattctgttaaaaactgataactgcgctttgacgttgcgaaagcggctcttttacgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgtaatac................................... Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 4.0E-52 bit: 206.0 Len: 136 Query Start:213 Query End:348 Subject Strand: POSITIVE Subject Start: 147 Subject End: 282 ....................................................................................................................................................................................................................actttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaa...................................... ....................................................................................................................................................................................................................actttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa...................................... Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 2.0E-51 bit: 204.0 Len: 135 Query Start:215 Query End:349 Subject Strand: POSITIVE Subject Start: 112 Subject End: 246 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat..................................... ......................................................................................................................................................................................................................tttgtaaagataattctgttaaaaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttataat..................................... Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 1.0E-49 bit: 198.0 Len: 132 Query Start:213 Query End:344 Subject Strand: POSITIVE Subject Start: 198 Subject End: 329 ....................................................................................................................................................................................................................actttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.......................................... ....................................................................................................................................................................................................................actttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt.......................................... Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 1.0E-49 bit: 198.0 Len: 136 Query Start:214 Query End:349 Subject Strand: POSITIVE Subject Start: 309 Subject End: 444 .....................................................................................................................................................................................................................ctttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat..................................... .....................................................................................................................................................................................................................ctttgtaaagataatttctttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtcttgtaat..................................... Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 2.0E-48 bit: 194.0 Len: 114 Query Start:232 Query End:345 Subject Strand: POSITIVE Subject Start: 119 Subject End: 232 .......................................................................................................................................................................................................................................cttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg......................................... .......................................................................................................................................................................................................................................cttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg......................................... Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 2.0E-48 bit: 194.0 Len: 134 Query Start:215 Query End:348 Subject Strand: POSITIVE Subject Start: 186 Subject End: 319 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaa...................................... ......................................................................................................................................................................................................................tttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaa...................................... Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 135 Query Start:215 Query End:349 Subject Strand: NEGATIVE Subject Start: 692 Subject End: 826 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat..................................... ......................................................................................................................................................................................................................tttgtaaaaataattctgttaaaaagtgataactgtactttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatacaaaacaataggttttgtaat..................................... Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 143 Query Start:216 Query End:358 Subject Strand: POSITIVE Subject Start: 170 Subject End: 312 .......................................................................................................................................................................................................................ttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatg............................ .......................................................................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgatg............................ Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 143 Query Start:215 Query End:357 Subject Strand: NEGATIVE Subject Start: 98 Subject End: 240 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgat............................. ......................................................................................................................................................................................................................tttgtaaaaataattccgttaaaaagcgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgat............................. Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 131 Query Start:215 Query End:345 Subject Strand: NEGATIVE Subject Start: 96 Subject End: 226 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg......................................... ......................................................................................................................................................................................................................tttgtaaagataattctgttaaaaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg......................................... Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 4.0E-46 bit: 186.0 Len: 142 Query Start:215 Query End:356 Subject Strand: NEGATIVE Subject Start: 86 Subject End: 227 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactga.............................. ......................................................................................................................................................................................................................tttgtaaagataattctgttaaaaactgataactgcgttttgacattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgcaatacgctga.............................. Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 9.0E-44 bit: 178.0 Len: 138 Query Start:212 Query End:349 Subject Strand: NEGATIVE Subject Start: 382 Subject End: 519 ...................................................................................................................................................................................................................gactttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat..................................... ...................................................................................................................................................................................................................gactttgtaaagataattctgatgaaaaatgataatttcgatttggcattgcgaaagcggctgttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat..................................... Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 1.0E-42 bit: 174.0 Len: 144 Query Start:214 Query End:357 Subject Strand: POSITIVE Subject Start: 256 Subject End: 399 .....................................................................................................................................................................................................................ctttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgat............................. .....................................................................................................................................................................................................................ctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgat............................. Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 6.0E-42 bit: 172.0 Len: 107 Query Start:253 Query End:359 Subject Strand: POSITIVE Subject Start: 108 Subject End: 214 ............................................................................................................................................................................................................................................................tttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatga........................... ............................................................................................................................................................................................................................................................tttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatga........................... Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 6.0E-42 bit: 172.0 Len: 131 Query Start:215 Query End:345 Subject Strand: NEGATIVE Subject Start: 87 Subject End: 217 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg......................................... ......................................................................................................................................................................................................................tttgtaaagattatttctttagaaaatggtaatttcgatttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg......................................... Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 1.0E-39 bit: 165.0 Len: 135 Query Start:215 Query End:349 Subject Strand: POSITIVE Subject Start: 142 Subject End: 276 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat..................................... ......................................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataat..................................... Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 1.0E-39 bit: 165.0 Len: 135 Query Start:215 Query End:349 Subject Strand: POSITIVE Subject Start: 202 Subject End: 335 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat..................................... ......................................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaat..................................... Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 6.0E-39 bit: 163.0 Len: 134 Query Start:215 Query End:348 Subject Strand: NEGATIVE Subject Start: 407 Subject End: 540 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaa...................................... ......................................................................................................................................................................................................................tttgtaaagataattacattgaaaattgataatttcgttttgacgttgcgaaagcggctgttttgcgaggtaaaacctacgcttttgccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaa...................................... Subject: pint_PI2056_PI2057|conserved hypothetical protein:conserved hypothetical protein; possible metal-dependent membrane protease|POSITIVE:POSITIVE|[2014489,2015078]|590 HSP 1 e-value: 3.0E-37 bit: 157.0 Len: 103 Query Start:253 Query End:355 Subject Strand: POSITIVE Subject Start: 380 Subject End: 482 ............................................................................................................................................................................................................................................................tttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactg............................... ............................................................................................................................................................................................................................................................tttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatacactg............................... Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 1.0E-36 bit: 155.0 Len: 114 Query Start:236 Query End:349 Subject Strand: POSITIVE Subject Start: 32 Subject End: 145 ...........................................................................................................................................................................................................................................aaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat..................................... ...........................................................................................................................................................................................................................................aaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaat..................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 1.0E-33 bit: 145.0 Len: 137 Query Start:215 Query End:351 Subject Strand: POSITIVE Subject Start: 92 Subject End: 228 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatac................................... ......................................................................................................................................................................................................................tttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatac................................... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 2.0E-32 bit: 141.0 Len: 107 Query Start:253 Query End:359 Subject Strand: NEGATIVE Subject Start: 317 Subject End: 423 ............................................................................................................................................................................................................................................................tttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatga........................... ............................................................................................................................................................................................................................................................tttgacgttgcgaaagcagctcttttgcaacgcaaaacctatgcttttaccgtgcaaaacagccgcttttaggatgcaaaacaataggttttgtaacgcactgatga........................... Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 3.0E-28 bit: 127.0 Len: 144 Query Start:216 Query End:359 Subject Strand: POSITIVE Subject Start: 113 Subject End: 256 .......................................................................................................................................................................................................................ttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatga........................... .......................................................................................................................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatga........................... Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 5.0E-27 bit: 123.0 Len: 154 Query Start:233 Query End:386 Subject Strand: POSITIVE Subject Start: 206 Subject End: 359 ........................................................................................................................................................................................................................................ttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatgaacagatggttaggcaacagttaccctt ........................................................................................................................................................................................................................................ttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttccctt Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 3.0E-25 bit: 117.0 Len: 135 Query Start:215 Query End:349 Subject Strand: POSITIVE Subject Start: 192 Subject End: 326 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat..................................... ......................................................................................................................................................................................................................tttgtaaagataatttcgttaaaaagtgataactgcactttgacgttgcgaaagcggctgttttacgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttaggacgcaaaacaatagattttgtaat..................................... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 3.0E-25 bit: 117.0 Len: 131 Query Start:214 Query End:344 Subject Strand: NEGATIVE Subject Start: 179 Subject End: 309 .....................................................................................................................................................................................................................ctttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.......................................... .....................................................................................................................................................................................................................ctttgtaaagataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt.......................................... Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 134 Query Start:233 Query End:366 Subject Strand: NEGATIVE Subject Start: 325 Subject End: 458 ........................................................................................................................................................................................................................................ttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatgaacagatg.................... ........................................................................................................................................................................................................................................ttaaaaagtgataactgcgctttgacattgcgaaagcgtaggttttgcgatgcaaaagcgccacttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgcaatgcgttgataaacagatg.................... Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 7.0E-23 bit: 109.0 Len: 135 Query Start:215 Query End:349 Subject Strand: POSITIVE Subject Start: 80 Subject End: 214 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat..................................... ......................................................................................................................................................................................................................tttgtaaagataatttcgttgaaaagtggtaattgcgctttggcattgcgaaagcggctgttttgcgatgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaat..................................... Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 131 Query Start:215 Query End:345 Subject Strand: POSITIVE Subject Start: 145 Subject End: 275 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg......................................... ......................................................................................................................................................................................................................tttgtaaagataattcgttgaaaaaatgataatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttg......................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:265 Query End:299 Subject Strand: NEGATIVE Subject Start: 195 Subject End: 229 ........................................................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt....................................................................................... ........................................................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt....................................................................................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 6.0E-14 bit: 79.8 Len: 144 Query Start:215 Query End:358 Subject Strand: NEGATIVE Subject Start: 177 Subject End: 320 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatg............................ ......................................................................................................................................................................................................................tttgtaaagataattcccttaaaaaaggataactgcgctttggcattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaacacgttttataacacgctgatg............................ HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:265 Query End:299 Subject Strand: POSITIVE Subject Start: 236 Subject End: 270 ........................................................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt....................................................................................... ........................................................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt....................................................................................... Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 143 Query Start:215 Query End:357 Subject Strand: POSITIVE Subject Start: 227 Subject End: 369 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgat............................. ......................................................................................................................................................................................................................tttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaacatattttataacacactgat............................. Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 130 Query Start:215 Query End:344 Subject Strand: NEGATIVE Subject Start: 179 Subject End: 308 ......................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.......................................... ......................................................................................................................................................................................................................tttgtaaagataattttattaaaaagtggcaattgcgttttgacattgcaaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcgaaacaataggtttt.......................................... HSP 2 e-value: 9.0E-7 bit: 56.0 Len: 36 Query Start:265 Query End:300 Subject Strand: POSITIVE Subject Start: 224 Subject End: 259 ........................................................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt...................................................................................... ........................................................................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt...................................................................................... Subject: pint_PI0652_PI0653|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[595853,596185]|333 HSP 1 e-value: 4.0E-12 bit: 73.8 Len: 57 Query Start:316 Query End:372 Subject Strand: POSITIVE Subject Start: 249 Subject End: 305 ...........................................................................................................................................................................................................................................................................................................................cgcttttggaatgcaaaacaataggttttgtaatacactgatgaacagatggttagg.............. ...........................................................................................................................................................................................................................................................................................................................cgcttttggaatgcaaaacaataggttttgtaatgcgctgatgatgagattgttagg.............. HSP 2 e-value: 9.0E-7 bit: 56.0 Len: 36 Query Start:265 Query End:300 Subject Strand: POSITIVE Subject Start: 220 Subject End: 255 ........................................................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt...................................................................................... ........................................................................................................................................................................................................................................................................aaagcggctcttttgccttgcaaaacctacgctttt...................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GCUGUGGUUCCAUUCCUACUUGACGGACUAUUUAACGAUUGAUUUUAGAUAGUUUACAUAACUCCAAGUCCCGCAAACUCACAACGAGUUUGCGGGAUUUUUGUUUCUUGCCCUACACGUGGGUUCAGCAUUAGAAAGCAGGCUAAACAAGCAAUUAGGUAGCUAUUCUUUCGGCAAGCCUCAUAAUAAAAUAGUGAGAGAUUUUCAAUCCGACUUUGUAAAGAUUAUUCUCUUAAAAAGUGAUAACUGCGUUUUGACGAUGCGAAAGCGGCUCUUUUGCGAUGCAAAACCUACGCUUUUACCGUGCAAAACAGCCGCUUUUGGAAUGCAAAACAAUAGGUUUUGUAAUACACUGAUGAACAGAUGGUUAGGCAACAGUUACCCUU .....(((..(.............(((((((((((.........)))))))))))....(((...(((((((((((((((.....)))))))))))))))..)))..(((((..((.(((..(((((.((...(((((..(((((...((....))...)))))...))))).((((((((.............(((((((.....((((..((...))...))))..)))))))...(((....)))..((((((.((.(.(((((((((((.(((((((....((((.......))))....))))))).))))))))))).).))))))))...))).))))).......)).)))))..)))))..)))))..)..)))... (-106.60) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAGGGUAACUGUUGCCUAACCAUCUGUUCAUCAGUGUAUUACAAAACCUAUUGUUUUGCAUUCCAAAAGCGGCUGUUUUGCACGGUAAAAGCGUAGGUUUUGCAUCGCAAAAGAGCCGCUUUCGCAUCGUCAAAACGCAGUUAUCACUUUUUAAGAGAAUAAUCUUUACAAAGUCGGAUUGAAAAUCUCUCACUAUUUUAUUAUGAGGCUUGCCGAAAGAAUAGCUACCUAAUUGCUUGUUUAGCCUGCUUUCUAAUGCUGAACCCACGUGUAGGGCAAGAAACAAAAAUCCCGCAAACUCGUUGUGAGUUUGCGGGACUUGGAGUUAUGUAAACUAUCUAAAAUCAAUCGUUAAAUAGUCCGUCAAGUAGGAAUGGAACCACAGC ..(((((.....)))))..((((((((((...((((((..((((......))))..))))))...(((((((((.((((((...((((((.(...).))))))...)))))).)))))))))....(((.(((....(((((...(((((..((((......))))...)))))..)))))......(((((.((......))))))).))).)))..))))))...((((.(((...(((((((.(........).))))))).........((((............((((((((((((.....)))))))))))).((((((((.....)))..)))))................))))..))).)))).))))......... (-102.10) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 966 310 261 53 4 pint:PI2144|5end_hypothetical_protein_2091954..2092184_POSITIVE 966 310 261 226 177 pint:PI2003|5end_hypothetical_protein_1960823..1961053_POSITIVE 966 310 261 65 16 pint:PI2002|5end_hypothetical_protein_1960662..1960892_POSITIVE 961 320 271 63 14 pint:PI1129|5end_hypothetical_protein_1055377..1055607_POSITIVE 942 310 261 196 147 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 935 330 281 85 36 pint:PI1346|5end_hypothetical_protein_1260814..1261044_POSITIVE 935 330 281 57 8 pint:PI0061|5end_hypothetical_protein_60500..60730_POSITIVE 935 330 281 57 8 pint:PI0004|5end_hypothetical_protein_6199..6429_POSITIVE 913 310 261 65 16 pint:PI1601|5end_hypothetical_protein_1530282..1530512_POSITIVE 907 340 291 95 46 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 907 340 291 52 3 pint:PI1905|5end_hypothetical_protein_1847628..1847858_POSITIVE 907 340 291 56 7 pint:PI1339|5end_hypothetical_protein_1256671..1256901_POSITIVE 907 340 291 221 172 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 907 340 291 56 7 pint:PI0104|5end_hypothetical_protein_99105..99335_POSITIVE 907 340 291 144 95 pint:PI0055|5end_hypothetical_protein_54815..55045_POSITIVE 907 340 291 56 7 pint:PI0053|5end_hypothetical_protein_54727..54957_POSITIVE 906 320 271 102 53 pint:PI1604|5end_hypothetical_protein_1534017..1534247_POSITIVE 892 310 261 65 16 pint:PI1934|5end_hypothetical_protein_1882363..1882593_POSITIVE 892 310 261 73 24 pint:PI1168|5end_hypothetical_protein_1089696..1089926_POSITIVE 892 310 261 65 16 pint:PI1167|5end_hypothetical_protein_1089688..1089918_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 966 310 261 107 58 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 966 310 261 147 98 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 961 320 271 58 9 pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE 942 310 261 147 98 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 942 310 261 147 98 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 914 310 261 121 72 pint:PI1356|3end_hypothetical_protein_1273340..1273490_POSITIVE 907 340 291 137 88 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 907 340 291 50 1 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 907 340 291 50 1 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE 907 340 291 78 29 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 892 310 261 151 102 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 892 310 261 147 98 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 885 310 261 147 98 pint:PI0670|3end_hypothetical_protein_611280..611430_POSITIVE 842 350 301 54 5 pint:PI0669|3end_hypothetical_protein_611147..611297_POSITIVE 824 300 251 147 98 pint:PI1601|3end_hypothetical_protein_1530454..1530604_POSITIVE 811 310 261 147 98 pint:PI0004|3end_hypothetical_protein_6389..6539_POSITIVE 750 348 301 54 7 pint:PI1051|3end_hypothetical_protein_970228..970378_POSITIVE 746 310 261 141 92 pint:PI0182|3end_hypothetical_protein_174277..174427_POSITIVE 741 280 231 117 68 pint:PI0200|3end_hypothetical_protein_191735..191885_POSITIVE 725 310 261 147 98 pint:PI0158|3end_hypothetical_protein_151298..151448_POSITIVE