Origin IGS: aaatgcctatcggttagggtgaaatgactgaaaaacaagttaaagcagaaaataaatggacttttattcgtctgttcagcaattaatccttaaatttgtgcgattttaaaaagttatgcggaataagtaaacgcttcacaaggcaaaactataattgttcttttgcctttttgtggtctttacttttccttatgatgttaggtcaaaacaataagtattttaaattttagatgaacgtaattacgaaaactcttcaattggctgatggaagaaacatcacaattgaaactggaaaggttgcaaagcaagccgatggcgcggcagtaatcagaatgggaaacaccgtgctcctcgcaactgtttgtgcagccaaagaggcagttccaggtacagactttatgcctttgcaagtagattatcgcgagcagtatgctgccgcaggccgcttccctggtggtttcacaaagcgcgaaggcaaagccaacgacgacgaaattctcacatcgcgtcttgtagaccgtgtgcttcgtcctctttttccttcagattatcacacagaagtgttcgttacagtaatgcttctttcagctgacggcgttgatatgcccgatgctttggcaggatttgcagcatcggtagctatgcaatgctcggatattcctatcgaacaccccatctctgaagtacgtgtagcacgtgtaaacggagaatatatcatcgacccaaccttcgaacaaatggaggaagccgatatggatattatggttggtgccaccaaggacaacattatgatggtggagggtgaaatggacgaggtctca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgagacctcgtccatttcaccctccaccatcataatgttgtccttggtggcaccaaccataatatccatatcggcttcctccatttgttcgaaggttgggtcgatgatatattctccgtttacacgtgctacacgtacttcagagatggggtgttcgataggaatatccgagcattgcatagctaccgatgctgcaaatcctgccaaagcatcgggcatatcaacgccgtcagctgaaagaagcattactgtaacgaacacttctgtgtgataatctgaaggaaaaagaggacgaagcacacggtctacaagacgcgatgtgagaatttcgtcgtcgttggctttgccttcgcgctttgtgaaaccaccagggaagcggcctgcggcagcatactgctcgcgataatctacttgcaaaggcataaagtctgtacctggaactgcctctttggctgcacaaacagttgcgaggagcacggtgtttcccattctgattactgccgcgccatcggcttgctttgcaacctttccagtttcaattgtgatgtttcttccatcagccaattgaagagttttcgtaattacgttcatctaaaatttaaaatacttattgttttgacctaacatcataaggaaaagtaaagaccacaaaaaggcaaaagaacaattatagttttgccttgtgaagcgtttacttattccgcataactttttaaaatcgcacaaatttaaggattaattgctgaacagacgaataaaagtccatttattttctgctttaacttgtttttcagtcatttcaccctaaccgataggcattt Mask Tandem Repeat Region ================================================ aaatgcctatcggttagggtgaaatgactgaaaaacaagttaaagcagaaaataaatggacttttattcgtctgttcagcaattaatccttaaatttgtgcgattttaaaaagttatgcggaataagtaaacgcttcacaaggcaaaactataattgttcttttgcctttttgtggtctttacttttccttatgatgttaggtcaaaacaataagtattttaaattttagatgaacgtaattacgaaaactcttcaattggctgatggaagaaacatcacaattgaaactggaaaggttgcaaagcaagccgatggcgcggcagtaatcagaatgggaaacaccgtgctcctcgcaactgtttgtgcagccaaagaggcagttccaggtacagactttatgcctttgcaagtagattatcgcgagcagtatgctgccgcaggccgcttccctggtggtttcacaaagcgcgaaggcaaagccaacgacgacgaaattctcacatcgcgtcttgtagaccgtgtgcttcgtcctctttttccttcagattatcacacagaagtgttcgttacagtaatgcttctttcagctgacggcgttgatatgcccgatgctttggcaggatttgcagcatcggtagctatgcaatgctcggatattcctatcgaacaccccatctctgaagtacgtgtagcacgtgtaaacggagaatatatcatcgacccaaccttcgaacaaatggaggaagccgatatggatattatggttggtgccaccaaggacaacattatgatggtggagggtgaaatggacgaggtctca Find is-nt database================================================ Query_seq: PI2043:PI2044|PI2043:PI2044:hypothetical protein:hypothetical protein:->->:1996318..1997138 821 aaatgcctatcggttagggtgaaatgactgaaaaacaagttaaagcagaaaataaatggacttttattcgtctgttcagcaattaatccttaaatttgtgcgattttaaaaagttatgcggaataagtaaacgcttcacaaggcaaaactataattgttcttttgcctttttgtggtctttacttttccttatgatgttaggtcaaaacaataagtattttaaattttagatgaacgtaattacgaaaactcttcaattggctgatggaagaaacatcacaattgaaactggaaaggttgcaaagcaagccgatggcgcggcagtaatcagaatgggaaacaccgtgctcctcgcaactgtttgtgcagccaaagaggcagttccaggtacagactttatgcctttgcaagtagattatcgcgagcagtatgctgccgcaggccgcttccctggtggtttcacaaagcgcgaaggcaaagccaacgacgacgaaattctcacatcgcgtcttgtagaccgtgtgcttcgtcctctttttccttcagattatcacacagaagtgttcgttacagtaatgcttctttcagctgacggcgttgatatgcccgatgctttggcaggatttgcagcatcggtagctatgcaatgctcggatattcctatcgaacaccccatctctgaagtacgtgtagcacgtgtaaacggagaatatatcatcgacccaaccttcgaacaaatggaggaagccgatatggatattatggttggtgccaccaaggacaacattatgatggtggagggtgaaatggacgaggtctca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI2043:PI2044|PI2043:PI2044:hypothetical protein:hypothetical protein:->->:1996318..1997138 821 aaatgcctatcggttagggtgaaatgactgaaaaacaagttaaagcagaaaataaatggacttttattcgtctgttcagcaattaatccttaaatttgtgcgattttaaaaagttatgcggaataagtaaacgcttcacaaggcaaaactataattgttcttttgcctttttgtggtctttacttttccttatgatgttaggtcaaaacaataagtattttaaattttagatgaacgtaattacgaaaactcttcaattggctgatggaagaaacatcacaattgaaactggaaaggttgcaaagcaagccgatggcgcggcagtaatcagaatgggaaacaccgtgctcctcgcaactgtttgtgcagccaaagaggcagttccaggtacagactttatgcctttgcaagtagattatcgcgagcagtatgctgccgcaggccgcttccctggtggtttcacaaagcgcgaaggcaaagccaacgacgacgaaattctcacatcgcgtcttgtagaccgtgtgcttcgtcctctttttccttcagattatcacacagaagtgttcgttacagtaatgcttctttcagctgacggcgttgatatgcccgatgctttggcaggatttgcagcatcggtagctatgcaatgctcggatattcctatcgaacaccccatctctgaagtacgtgtagcacgtgtaaacggagaatatatcatcgacccaaccttcgaacaaatggaggaagccgatatggatattatggttggtgccaccaaggacaacattatgatggtggagggtgaaatggacgaggtctca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 1 Min: 231 Max: 821 Len: 591 Subject: gi|89109929|ref|AP_003709.1| polynucleotide phosphorylase/polyadenylase [Escherichia coli W3110] HSP 1 e-value: 6.0E-38 bit: 154.0 Len: 591 Query Start:231 Query End:821 Subject Strand: null Subject Start: 25 Subject End: 220 ...................................................................................................................................................................................................................................... M N V I T K T L Q L A D G R N I T I E T G K V A K Q A D G A A V I R M G N T V L L A T V C A A K E A V P G T D F M P L Q V D Y R E Q Y A A A G R F P G G F T K R E G K A N D D E I L T S R L V D R V L R P L F P S D Y H T E V F V T V M L L S A D G V D M P D A L A G F A A S V A M Q C S D I P I E H P I S E V R V A R V N G E Y I I D P T F E Q M E E A D M D I M V G A T K D N I M M V E G E M D E V S ...................................................................................................................................................................................................................................... L N P I V R K F Q Y G Q - H T V T L E T G M M A R Q A T A A V M V S M D D T A V F V T V V G Q K K A K P G Q D F F P L T V N Y Q E R T Y A A G R I P G S F F R R E G R P S E G E T L I A R L I D R P I R P L F P E G F V N E V Q V I A T V V S V N P Q V N P D I V A M I G A S A A L S L S G I P F N G P I G A A R V G Y I N D Q Y V L N P T Q D E L K E S K L D L V V A G T E A A V L M V E S E A Q L L S Find nr database================================================ Query_seq: PI2043:PI2044|PI2043:PI2044:hypothetical protein:hypothetical protein:->->:1996318..1997138 821 aaatgcctatcggttagggtgaaatgactgaaaaacaagttaaagcagaaaataaatggacttttattcgtctgttcagcaattaatccttaaatttgtgcgattttaaaaagttatgcggaataagtaaacgcttcacaaggcaaaactataattgttcttttgcctttttgtggtctttacttttccttatgatgttaggtcaaaacaataagtattttaaattttagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 aaatgcctatcggttagggtgaaatgactgaaaaacaagttaaagcagaaaataaatggacttttattcgtctgttcagcaattaatccttaaatttgtgcgattttaaaaagttatgcggaataagtaaacgcttcacaaggcaaaactataattgttcttttgcctttttgtggtctttacttttccttatgatgttaggtcaaaacaataagtattttaaattttagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict ORF larger than 30AA ================================================ Protein_Len: 44 Strand: + Start: 96 End: 227 ............................................................................................... M C D F K K L C G I S K R F T R Q N Y N C S F A F L W S L L F L M M L G Q N N K Y F K F .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 33 Strand: + Start: 415 End: 513 .............................................................................................................................................................................................................................................................................................................................................................................................................................. M I A S S M L P Q A A S L V V S Q S A K A K P T T T K F S H R V L .................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 362 End: 589 ......................................................................................................................................................................................................................................................................................................................................................................... M C S Q R G S S R Y R L Y A F A S R L S R A V C C R R P L P W W F H K A R R Q S Q R R R N S H I A S C R P C A S S S F S ........................................................................................................................................................................................................................................ Protein_Len: 31 Strand: + Start: 710 End: 802 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M Y H R P N L R T N G G S R Y G Y Y G W C H Q G Q H Y D G G G ................... Protein_Len: 60 Strand: + Start: 231 End: 821 ...................................................................................................................................................................................................................................... M N V I T K T L Q L A D G R N I T I E T G K V A K Q A D G A A V I R M G N T V L L A T V C A A K E A V P G T D F M P L Q Protein_Len: 57 Strand: - Start: 588 End: 758 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... S V A N I H G I S Q C S K C C R Y S H L A R I N R D F V G D R F Y T Y C T Y V S F I D D V W G E F L H L F G I H M ............................................................... Protein_Len: 60 Strand: - Start: 554 End: 808 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... A D T A I C H E S I G I S C G M E S T R T A R T F P S Y I M S G V K S C I S S A S I S I I T P A V L S L M I I T S P S M ............. Protein_Len: 48 Strand: - Start: 257 End: 400 ................................................................................................................................................................................................................................................................ N A S P L F M V I S V P F T A F C A S P A A T I L I P F V T S R A V T Q A A L S A T G P V S K M ..................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 201 End: 431 ........................................................................................................................................................................................................ K L Q S I S S V D C N F S S L N C L L G I A R C Y D S H S V G H E E C S N T C G F L C N W T C V K H R Q L Y I I A L L M ...................................................................................................................................................................................................................................................................................................................................................................................................... aaatgcctatcggttagggtgaaatgactgaaaaacaagttaaagcagaaaataaatggacttttattcgtctgttcagcaattaatccttaaatttgtgcgattttaaaaagttatgcggaataagtaaacgcttcacaaggcaaaactataattgttcttttgcctttttgtggtctttacttttccttatgatgttaggtcaaaacaataagtattttaaattttagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 85 Start: 103 End: 132 ......................................................................................................GTTTACTTATTCCGCATAACTTTTTAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aaatgcctatcggttagggtgaaatgactgaaaaacaagttaaagcagaaaataaatggacttttattcgtctgttcagcaattaatccttaaatttgtgcgattttaaaaagttatgcggaataagtaaacgcttcacaaggcaaaactataattgttcttttgcctttttgtggtctttacttttccttatgatgttaggtcaaaacaataagtattttaaattttagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: PI2043:PI2044|PI2043:PI2044:hypothetical protein:hypothetical protein:->->:1996318..1997138 821 aaatgcctatcggttagggtgaaatgactgaaaaacaagttaaagcagaaaataaatggacttttattcgtctgttcagcaattaatccttaaatttgtgcgattttaaaaagttatgcggaataagtaaacgcttcacaaggcaaaactataattgttcttttgcctttttgtggtctttacttttccttatgatgttaggtcaaaacaataagtattttaaattttagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn Intra-Species Hit: Count: 1 Min: 1 Max: 229 Len: 229 Subject: pint_PI2043_PI2044|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1996318,1997138]|821 HSP 1 e-value: 1.0E-126 bit: 454.0 Len: 229 Query Start:1 Query End:229 Subject Strand: POSITIVE Subject Start: 1 Subject End: 229 aaatgcctatcggttagggtgaaatgactgaaaaacaagttaaagcagaaaataaatggacttttattcgtctgttcagcaattaatccttaaatttgtgcgattttaaaaagttatgcggaataagtaaacgcttcacaaggcaaaactataattgttcttttgcctttttgtggtctttacttttccttatgatgttaggtcaaaacaataagtattttaaatttta................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ aaatgcctatcggttagggtgaaatgactgaaaaacaagttaaagcagaaaataaatggacttttattcgtctgttcagcaattaatccttaaatttgtgcgattttaaaaagttatgcggaataagtaaacgcttcacaaggcaaaactataattgttcttttgcctttttgtggtctttacttttccttatgatgttaggtcaaaacaataagtattttaaatttta................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAAUGCCUAUCGGUUAGGGUGAAAUGACUGAAAAACAAGUUAAAGCAGAAAAUAAAUGGACUUUUAUUCGUCUGUUCAGCAAUUAAUCCUUAAAUUUGUGCGAUUUUAAAAAGUUAUGCGGAAUAAGUAAACGCUUCACAAGGCAAAACUAUAAUUGUUCUUUUGCCUUUUUGUGGUCUUUACUUUUCCUUAUGAUGUUAGGUCAAAACAAUAAGUAUUUUAAAUUUUA ((((((.......((((((..((.((.((((.............(((((.((((((......))))))..))))))))))).))...))))))..((((..(((((.((...((((((.((((.(((((((.(((.((.(((((((((..((....))..)))))))))..)).))).))))))))))).)))))).)))))))...))))...))))))......... (-49.11) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAAUUUAAAAUACUUAUUGUUUUGACCUAACAUCAUAAGGAAAAGUAAAGACCACAAAAAGGCAAAAGAACAAUUAUAGUUUUGCCUUGUGAAGCGUUUACUUAUUCCGCAUAACUUUUUAAAAUCGCACAAAUUUAAGGAUUAAUUGCUGAACAGACGAAUAAAAGUCCAUUUAUUUUCUGCUUUAACUUGUUUUUCAGUCAUUUCACCCUAACCGAUAGGCAUUU .........((((.(((((((...................((((((((((((..((((...((((((((............))))))))))))...).))))))).)))).............................(((...(((.((((((.((((((.(.(((((.............))))).).)))))))))))).)))....)))...))))))).)))) (-39.62) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 277 199 160 77 40 pint:PI0116|5end_conserved_hypothetical_protein_110213..110443_POSITIVE 275 170 125 71 23 pint:PI0545|5end_sugar_kinase_496411..496641_POSITIVE 266 178 131 89 54 pint:PI1912|5end_possible_DNA_repair_protein_1856364..1856594_POSITIVE 264 159 111 145 94 pint:PI0625|5end_possible_membrane_transport_protein_573104..573334_POSITIVE 262 178 132 112 62 pint:PI2100|5end_conserved_hypothetical_protein_2053351..2053581_POSITIVE 262 38 5 201 162 pint:PI1572|5end_hypothetical_protein_1497782..1498012_POSITIVE 262 180 132 216 162 pint:PI0803|5end_DNA-damage-inducible_protein_F_739757..739987_POSITIVE 252 99 52 119 54 pint:PI1431|5end_conserved_hypothetical_protein_1352079..1352309_POSITIVE 252 143 102 153 104 pint:PI1293|5end_ISPg4-related_transposase_(IS5_family)_1207099..1207329_POSITIVE 252 143 102 153 104 pint:PI1181|5end_ISPg4-related_transposase_(IS5_family)_1102670..1102900_POSITIVE 252 143 102 153 104 pint:PI1085|5end_ISPg4-related_transposase_(IS5_family)_1005151..1005381_POSITIVE 246 170 123 224 183 pint:PI1515|5end_hypothetical_protein_1434101..1434331_POSITIVE 246 113 71 212 170 pint:PI0137|5end_lectin-like_adhesin_precursor_128865..129095_POSITIVE 242 177 131 128 74 pint:PI0483|5end_30S_ribosomal_protein_S13_443585..443815_POSITIVE 241 48 5 152 106 pint:PI0670|5end_hypothetical_protein_611000..611230_POSITIVE 241 48 5 76 30 pint:PI0669|5end_hypothetical_protein_610924..611154_POSITIVE 239 170 121 166 121 pint:PI1833|5end_bacterioferritin_comigratory_protein_1773957..1774187_POSITIVE 238 194 158 158 113 pint:PI2021|5end_DNA_repair_protein_1977925..1978155_POSITIVE 238 200 156 196 144 pint:PI2018|5end_50S_ribosomal_protein_L34_1975757..1975987_POSITIVE 234 48 5 62 19 pint:PI0226|5end_ABC_transporter,_ATP-binding_/_permease_protein_222110..222340_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 262 180 132 66 12 pint:PI0801|3end_hypothetical_protein_739687..739837_POSITIVE 247 80 37 128 81 pint:PI0015|3end_possible__transport_protein_20150..20300_POSITIVE 246 170 123 115 74 pint:PI1514|3end_tRNA_nucleotidyltransferase/poly(A)_polymerase_1434072..1434222_POSITIVE 245 170 125 52 5 pint:PI0623|3end_hypothetical_protein_573080..573230_POSITIVE 238 194 158 79 34 pint:PI2020|3end_glycosyl_transferase,_group_2_family_protein_1977926..1978076_POSITIVE 238 200 156 77 25 pint:PI2017|3end_conserved_hypothetical_protein_1975718..1975868_POSITIVE 230 169 121 151 107 pint:PI1832|3end_conserved_hypothetical_protein_1774023..1774173_POSITIVE 230 204 161 132 91 pint:PI0972|3end_glycine_cleavage_system_H_protein_2_899399..899549_POSITIVE 229 194 157 150 115 pint:PI0457|3end_30S_ribosomal_protein_S7_429924..430074_POSITIVE 224 199 155 140 92 pint:PI1616|3end_hypothetical_protein_1542669..1542819_POSITIVE 223 50 5 63 4 pint:PI0124|3end_outer_membrane_protein/protective_antigen_OMA87_117182..117332_POSITIVE 222 80 36 67 7 pint:PI0297|3end_hypothetical_protein_277916..278066_POSITIVE 220 47 4 56 11 pint:PI0789|3end_NAD-utilizing_dehydrogenase_728385..728535_POSITIVE 218 50 4 139 72 pint:PI2080|3end_hypothetical_protein_2038298..2038448_POSITIVE 218 49 5 61 16 pint:PI0409|3end_3-deoxy-D-manno-octulosonic-acid_transferase_(kdotransferase)_375969..376119_POSITIVE 217 143 101 49 9 pint:PI1572|3end_hypothetical_protein_1498215..1498365_POSITIVE 214 197 159 145 111 pint:PI1527|3end_immunoreactive_46_kDa_antigen_PG99_1449520..1449670_POSITIVE 214 60 12 67 22 pint:PI1512|3end_hypothetical_protein_1429893..1430043_POSITIVE 213 201 165 76 37 pint:PI0728|3end_integrase_661508..661658_POSITIVE 211 178 131 93 44 pint:PI0472|3end_50S_ribosomal_protein_L5_438705..438855_POSITIVE