Origin IGS: cttatatatatggactattttttgtttttttaagactaccgctcctaaaaacgttacatcaaacactatgatttagtaggacttcatcaaggcaaacagctctctttcttcgcctgcgaccgatgctaaaacaactgcgattttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgccttaaaagtgagatagttacacaacggtaacacttgtgaaaaatatttacacctttattgccttctttttatttatgctatgagatgcaaaggggtaatttacacctgtttttagcgaatttccaatgtttttaaaatgacagcatca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgatgctgtcattttaaaaacattggaaattcgctaaaaacaggtgtaaattacccctttgcatctcatagcataaataaaaagaaggcaataaaggtgtaaatatttttcacaagtgttaccgttgtgtaactatctcacttttaaggcattataaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaagagaattatctttacaaaatcgcagttgttttagcatcggtcgcaggcgaagaaagagagctgtttgccttgatgaagtcctactaaatcatagtgtttgatgtaacgtttttaggagcggtagtcttaaaaaaacaaaaaatagtccatatatataag Mask Tandem Repeat Region ================================================ cttatatatatggactattttttgtttttttaagactaccgctcctaaaaacgttacatcaaacactatgatttagtaggacttcatcaaggcaaacagctctctttcttcgcctgcgaccgatgctaaaacaactgcgattttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgccttaaaagtgagatagttacacaacggtaacacttgtgaaaaatatttacacctttattgccttctttttatttatgctatgagatgcaaaggggtaatttacacctgtttttagcgaatttccaatgtttttaaaatgacagcatca Find is-nt database================================================ Query_seq: PI2029:PI2030|PI2029:PI2030:DNA topoisomerase I:hypothetical protein:->->:1985315..1985740 426 cttatatatatggactattttttgtttttttaagactaccgctcctaaaaacgttacatcaaacactatgatttagtaggacttcatcaaggcaaacagctctctttcttcgcctgcgaccgatgctaaaacaactgcgattttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgccttaaaagtgagatagttacacaacggtaacacttgtgaaaaatatttacacctttattgccttctttttatttatgctatgagatgcaaaggggtaatttacacctgtttttagcgaatttccaatgtttttaaaatgacagcatca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI2029:PI2030|PI2029:PI2030:DNA topoisomerase I:hypothetical protein:->->:1985315..1985740 426 cttatatatatggactattttttgtttttttaagactaccgctcctaaaaacgttacatcaaacactatgatttagtaggacttcatcaaggcaaacagctctctttcttcgcctgcgaccgatgctaaaacaactgcgattttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgccttaaaagtgagatagttacacaacggtaacacttgtgaaaaatatttacacctttattgccttctttttatttatgctatgagatgcaaaggggtaatttacacctgtttttagcgaatttccaatgtttttaaaatgacagcatca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI2029:PI2030|PI2029:PI2030:DNA topoisomerase I:hypothetical protein:->->:1985315..1985740 426 cttatatatatggactattttttgtttttttaagactaccgctcctaaaaacgttacatcaaacactatgatttagtaggacttcatcaaggcaaacagctctctttcttcgcctgcgaccgatgctaaaacaactgcgattttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgccttaaaagtgagatagttacacaacggtaacacttgtgaaaaatatttacacctttattgccttctttttatttatgctatgagatgcaaaggggtaatttacacctgtttttagcgaatttccaatgtttttaaaatgacagcatca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 cttatatatatggactattttttgtttttttaagactaccgctcctaaaaacgttacatcaaacactatgatttagtaggacttcatcaaggcaaacagctctctttcttcgcctgcgaccgatgctaaaacaactgcgattttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgccttaaaagtgagatagttacacaacggtaacacttgtgaaaaatatttacacctttattgccttctttttatttatgctatgagatgcaaaggggtaatttacacctgtttttagcgaatttccaatgtttttaaaatgacagcatca Predict ORF larger than 30AA ================================================ Protein_Len: 30 Strand: + Start: 174 End: 263 ............................................................................................................................................................................. M R F D I A K A A L L Q C K T A A F T V Q N L R F W N A K Q ................................................................................................................................................................... Protein_Len: 47 Strand: + Start: 151 End: 291 ...................................................................................................................................................... M I L L K S D N C A L T L R K R L F C N A K Q P L L P C K T Y A F G T Q N N R F Y N A L K V R ....................................................................................................................................... Protein_Len: 30 Strand: + Start: 321 End: 410 ................................................................................................................................................................................................................................................................................................................................ M F T P L L P S F Y L C Y E M Q R G N L H L F L A N F Q C F ................ Protein_Len: 36 Strand: - Start: 129 End: 236 ................................................................................................................................ F L Q S K T F I I R K F L S L Q A K V N R F R S K Q L A F C G S K G H M .............................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 62 End: 322 ............................................................. Q L S L E R L F H Y S R K S M A F A A R K C H L V A A K V T C F R R K Q F A F C Y T K Y H R L L S I T V C R Y C K H F M ........................................................................................................ cttatatatatggactattttttgtttttttaagactaccgctcctaaaaacgttacatcaaacactatgatttagtaggacttcatcaaggcaaacagctctctttcttcgcctgcgaccgatgctaaaacaactgcgattttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgccttaaaagtgagatagttacacaacggtaacacttgtgaaaaatatttacacctttattgccttctttttatttatgctatgagatgcaaaggggtaatttacacctgtttttagcgaatttccaatgtttttaaaatgacagcatca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 85 Start: 247 End: 276 ......................................................................................................................................................................................................................................................TTTGGAACGCAAAACAATAGGTTTTATAAT...................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ cttatatatatggactattttttgtttttttaagactaccgctcctaaaaacgttacatcaaacactatgatttagtaggacttcatcaaggcaaacagctctctttcttcgcctgcgaccgatgctaaaacaactgcgattttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgccttaaaagtgagatagttacacaacggtaacacttgtgaaaaatatttacacctttattgccttctttttatttatgctatgagatgcaaaggggtaatttacacctgtttttagcgaatttccaatgtttttaaaatgacagcatca Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 58 HP_score: -5.5 Tail_Score: -3.5616 Start: 174 End: 222 Full_Region: tttgcacggtaaaag cggctgttttgcattgcaaaag agccg ctttcgcaatgtcaaagcgcag ttatcactttttaag .............................................................................................................................................................................cggctgttttgcattgcaaaagagccgctttcgcaatgtcaaagcgcag............................................................................................................................................................................................................ TransTerm Strand: + Conf: 100 HP_score: -16.1 Tail_Score: -4.13767 Start: 195 End: 223 Full_Region: TTTGACATTGCGAAA GCGGCTCTTTTGC AAT GCAAAACAGCCGC TTTTACCGTGCAAAA ..................................................................................................................................................................................................GCGGCTCTTTTGCAATGCAAAACAGCCGC........................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -16.1 Tail_Score: -3.59262 Start: 195 End: 223 Full_Region: ttttgcacggtaaaa gcggctgttttgc att gcaaaagagccgc tttcgcaatgtcaaa ..................................................................................................................................................................................................gcggctgttttgcattgcaaaagagccgc........................................................................................................................................................................................................... Find igs database================================================ Query_seq: PI2029:PI2030|PI2029:PI2030:DNA topoisomerase I:hypothetical protein:->->:1985315..1985740 426 cttatatatatggactattttttgtttttttaagactaccgctcctaaaaacgttacatcaaacactatgatttagtaggacttcatcaaggcaaacagctctctttcttcgcctgcgaccgatgctaaaacaactgcgattttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgccttaaaagtgagatagttacacaacggtaacacttgtgaaaaatatttacacctttattgccttctttttatttatgctatgagatgcaaaggggtaatttacacctgtttttagcgaatttccaatgtttttaaaatgacagcatca Intra-Species Hit: Count: 49 Min: 32 Max: 426 Len: 395 Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 0.0 bit: 783.0 Len: 395 Query Start:32 Query End:426 Subject Strand: POSITIVE Subject Start: 32 Subject End: 426 ...............................aagactaccgctcctaaaaacgttacatcaaacactatgatttagtaggacttcatcaaggcaaacagctctctttcttcgcctgcgaccgatgctaaaacaactgcgattttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgccttaaaagtgagatagttacacaacggtaacacttgtgaaaaatatttacacctttattgccttctttttatttatgctatgagatgcaaaggggtaatttacacctgtttttagcgaatttccaatgtttttaaaatgacagcatca ...............................aagactaccgctcctaaaaacgttacatcaaacactatgatttagtaggacttcatcaaggcaaacagctctctttcttcgcctgcgaccgatgctaaaacaactgcgattttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgccttaaaagtgagatagttacacaacggtaacacttgtgaaaaatatttacacctttattgccttctttttatttatgctatgagatgcaaaggggtaatttacacctgtttttagcgaatttccaatgtttttaaaatgacagcatca Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 3.0E-53 bit: 210.0 Len: 138 Query Start:141 Query End:278 Subject Strand: POSITIVE Subject Start: 201 Subject End: 337 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgc.................................................................................................................................................... ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgc.................................................................................................................................................... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 4.0E-49 bit: 196.0 Len: 131 Query Start:142 Query End:272 Subject Strand: NEGATIVE Subject Start: 178 Subject End: 308 .............................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttta.......................................................................................................................................................... .............................................................................................................................................tttgtaaagataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttta.......................................................................................................................................................... Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 3.0E-47 bit: 190.0 Len: 211 Query Start:141 Query End:351 Subject Strand: POSITIVE Subject Start: 50 Subject End: 260 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgccttaaaagtgagatagttacacaa-cggtaacacttgtgaaaaatatttacacctttattgccttctttttatt........................................................................... ............................................................................................................................................ttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaa-gcttgtgaaaaatatttacacttttattagcttctttttatt........................................................................... Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 139 Query Start:140 Query End:278 Subject Strand: POSITIVE Subject Start: 110 Subject End: 248 ...........................................................................................................................................attttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgc.................................................................................................................................................... ...........................................................................................................................................attttgtaaagataattctgttaaaaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttataatgc.................................................................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 32 Query Start:316 Query End:347 Subject Strand: POSITIVE Subject Start: 286 Subject End: 317 ...........................................................................................................................................................................................................................................................................................................................gaaaaatatttacacctttattgccttctttt............................................................................... ...........................................................................................................................................................................................................................................................................................................................gaaaaatatttacacctttattaccttctttt............................................................................... Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 4.0E-46 bit: 186.0 Len: 134 Query Start:142 Query End:275 Subject Strand: POSITIVE Subject Start: 200 Subject End: 333 .............................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataa....................................................................................................................................................... .............................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataa....................................................................................................................................................... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 7.0E-45 bit: 182.0 Len: 140 Query Start:139 Query End:278 Subject Strand: POSITIVE Subject Start: 189 Subject End: 328 ..........................................................................................................................................gattttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgc.................................................................................................................................................... ..........................................................................................................................................gattttgtaaagataatttcgttaaaaagtgataactgcactttgacgttgcgaaagcggctgttttacgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttaggacgcaaaacaatagattttgtaatgc.................................................................................................................................................... Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 7.0E-45 bit: 182.0 Len: 136 Query Start:143 Query End:278 Subject Strand: POSITIVE Subject Start: 170 Subject End: 305 ..............................................................................................................................................ttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgc.................................................................................................................................................... ..............................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgc.................................................................................................................................................... Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 7.0E-45 bit: 182.0 Len: 132 Query Start:140 Query End:271 Subject Strand: NEGATIVE Subject Start: 305 Subject End: 436 ...........................................................................................................................................attttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt........................................................................................................................................................... ...........................................................................................................................................attttgtaaagataattctcttaaaaagtgataactgcgctttgacgttgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt........................................................................................................................................................... Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 3.0E-44 bit: 180.0 Len: 131 Query Start:141 Query End:271 Subject Strand: NEGATIVE Subject Start: 152 Subject End: 282 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt........................................................................................................................................................... ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgtaaaacaataggtttt........................................................................................................................................................... Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 3.0E-44 bit: 180.0 Len: 207 Query Start:141 Query End:347 Subject Strand: POSITIVE Subject Start: 144 Subject End: 350 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgccttaaaagtgagatagttacacaacggtaacacttgtgaaaaatatttacacctttattgccttctttt............................................................................... ............................................................................................................................................ttttgtaaagataattcgttgaaaaaatgataatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgcaaagtcttgatagtgagatagttatgcaatggttacgcttgtgaaaaatatttacacttttattatcttctttt............................................................................... Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 1.0E-43 bit: 178.0 Len: 130 Query Start:142 Query End:271 Subject Strand: POSITIVE Subject Start: 149 Subject End: 278 .............................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt........................................................................................................................................................... .............................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt........................................................................................................................................................... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 1.0E-43 bit: 178.0 Len: 138 Query Start:141 Query End:278 Subject Strand: POSITIVE Subject Start: 166 Subject End: 303 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgc.................................................................................................................................................... ............................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgttttgacattgcgaaagcggctgttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgc.................................................................................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:313 Query End:347 Subject Strand: POSITIVE Subject Start: 338 Subject End: 372 ........................................................................................................................................................................................................................................................................................................................tgtgaaaaatatttacacctttattgccttctttt............................................................................... ........................................................................................................................................................................................................................................................................................................................tgtgaaaaatatttacatctttattaccttctttt............................................................................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 4.0E-43 bit: 176.0 Len: 189 Query Start:141 Query End:329 Subject Strand: POSITIVE Subject Start: 146 Subject End: 334 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgccttaaaagtgagatagttacacaacggtaacacttgtgaaaaatatttaca................................................................................................. ............................................................................................................................................ttttgtaaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacattgaagcatagcaagttacacaacagttacacctgcgaaaaatatttaca................................................................................................. Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 4.0E-43 bit: 176.0 Len: 133 Query Start:144 Query End:276 Subject Strand: POSITIVE Subject Start: 190 Subject End: 322 ...............................................................................................................................................tgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataat...................................................................................................................................................... ...............................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaat...................................................................................................................................................... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 4.0E-43 bit: 176.0 Len: 137 Query Start:142 Query End:278 Subject Strand: POSITIVE Subject Start: 480 Subject End: 616 .............................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgc.................................................................................................................................................... .............................................................................................................................................tttgtaaagataattctgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatgc.................................................................................................................................................... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 6.0E-42 bit: 172.0 Len: 131 Query Start:141 Query End:271 Subject Strand: NEGATIVE Subject Start: 97 Subject End: 227 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt........................................................................................................................................................... ............................................................................................................................................ttttgtaaagataattctgttaaaaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt........................................................................................................................................................... Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 3.0E-41 bit: 170.0 Len: 130 Query Start:142 Query End:271 Subject Strand: NEGATIVE Subject Start: 255 Subject End: 384 .............................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt........................................................................................................................................................... .............................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccacttttggaacgcaaaacaataggtttt........................................................................................................................................................... Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 1.0E-40 bit: 168.0 Len: 137 Query Start:141 Query End:277 Subject Strand: POSITIVE Subject Start: 79 Subject End: 215 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatg..................................................................................................................................................... ............................................................................................................................................ttttgtaaagataatttcgttgaaaagtggtaattgcgctttggcattgcgaaagcggctgttttgcgatgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatg..................................................................................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:192 Query End:226 Subject Strand: NEGATIVE Subject Start: 130 Subject End: 164 ...............................................................................................................................................................................................aaagcggctcttttgcaatgcaaaacagccgcttt........................................................................................................................................................................................................ ...............................................................................................................................................................................................aaagcggctcttttgcatcgcaaaacagccgcttt........................................................................................................................................................................................................ Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 1.0E-40 bit: 168.0 Len: 141 Query Start:141 Query End:281 Subject Strand: NEGATIVE Subject Start: 169 Subject End: 309 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgcctt................................................................................................................................................. ............................................................................................................................................ttttgtaaagataattttattaaaaagtggcaattgcgttttgacattgcaaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcgaaacaataggttttacaatgcctt................................................................................................................................................. Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 4.0E-40 bit: 167.0 Len: 136 Query Start:141 Query End:276 Subject Strand: NEGATIVE Subject Start: 90 Subject End: 225 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataat...................................................................................................................................................... ............................................................................................................................................ttttgtaaagataattctgttaaaaactgataactgcgctttgacgttgcgaaagcggctcttttacgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgtaat...................................................................................................................................................... Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 2.0E-39 bit: 165.0 Len: 135 Query Start:142 Query End:276 Subject Strand: POSITIVE Subject Start: 215 Subject End: 349 .............................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataat...................................................................................................................................................... .............................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat...................................................................................................................................................... Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 2.0E-39 bit: 165.0 Len: 131 Query Start:141 Query End:271 Subject Strand: NEGATIVE Subject Start: 98 Subject End: 228 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt........................................................................................................................................................... ............................................................................................................................................ttttgtaaagataattctgttaaaaactgataactgcgttttgacattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggtttt........................................................................................................................................................... Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 2.0E-39 bit: 165.0 Len: 135 Query Start:141 Query End:275 Subject Strand: NEGATIVE Subject Start: 107 Subject End: 241 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataa....................................................................................................................................................... ............................................................................................................................................ttttgtaaaaataattccgttaaaaagcgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataa....................................................................................................................................................... Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 2.0E-39 bit: 165.0 Len: 131 Query Start:141 Query End:271 Subject Strand: POSITIVE Subject Start: 114 Subject End: 244 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt........................................................................................................................................................... ............................................................................................................................................ttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggtttt........................................................................................................................................................... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 6.0E-39 bit: 163.0 Len: 130 Query Start:142 Query End:271 Subject Strand: POSITIVE Subject Start: 60 Subject End: 189 .............................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt........................................................................................................................................................... .............................................................................................................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggtttt........................................................................................................................................................... Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 133 Query Start:139 Query End:271 Subject Strand: NEGATIVE Subject Start: 347 Subject End: 479 ..........................................................................................................................................gattttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt........................................................................................................................................................... ..........................................................................................................................................gattttgtaaagataacattgttaaaaagtgataactgcgctttgacattgcgaaagcgtaggttttgcgatgcaaaagcgccacttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt........................................................................................................................................................... Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 133 Query Start:139 Query End:271 Subject Strand: POSITIVE Subject Start: 99 Subject End: 231 ..........................................................................................................................................gattttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt........................................................................................................................................................... ..........................................................................................................................................gatttagtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt........................................................................................................................................................... Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 133 Query Start:143 Query End:275 Subject Strand: POSITIVE Subject Start: 113 Subject End: 245 ..............................................................................................................................................ttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataa....................................................................................................................................................... ..............................................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataa....................................................................................................................................................... Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 137 Query Start:142 Query End:278 Subject Strand: POSITIVE Subject Start: 310 Subject End: 446 .............................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgc.................................................................................................................................................... .............................................................................................................................................tttgtaaagataatttctttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtcttgtaatgc.................................................................................................................................................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 9.0E-35 bit: 149.0 Len: 135 Query Start:141 Query End:275 Subject Strand: NEGATIVE Subject Start: 187 Subject End: 321 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataa....................................................................................................................................................... ............................................................................................................................................ttttgtaaagataattcccttaaaaaaggataactgcgctttggcattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaacacgttttataa....................................................................................................................................................... Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 6.0E-33 bit: 143.0 Len: 192 Query Start:138 Query End:329 Subject Strand: POSITIVE Subject Start: 152 Subject End: 343 .........................................................................................................................................cgattttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgccttaaaagtgagatagttacacaacggtaacacttgtgaaaaatatttaca................................................................................................. .........................................................................................................................................cgattttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttaca................................................................................................. Subject: pint_PI1370_PI1371|alkyl hydroperoxide reductase, subunit F:hypothetical protein|POSITIVE:POSITIVE|[1292237,1292498]|262 HSP 1 e-value: 6.0E-33 bit: 143.0 Len: 100 Query Start:143 Query End:242 Subject Strand: POSITIVE Subject Start: 163 Subject End: 262 ..............................................................................................................................................ttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaaccta........................................................................................................................................................................................ ..............................................................................................................................................ttgtaaagataattctcttaaaaagtgataactgcgctttggcattgcaaaagcggctattttgcatcgcaaaacagccgcttttactgtgtaaaaccta........................................................................................................................................................................................ Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 6.0E-33 bit: 143.0 Len: 136 Query Start:141 Query End:276 Subject Strand: NEGATIVE Subject Start: 228 Subject End: 362 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataat...................................................................................................................................................... ............................................................................................................................................ttttgtaaagataattcattgaaaaac-gataatttcgatttggcattgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacacttttggaatgcaaaacaataggttttataat...................................................................................................................................................... Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 2.0E-32 bit: 141.0 Len: 131 Query Start:141 Query End:271 Subject Strand: POSITIVE Subject Start: 185 Subject End: 315 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt........................................................................................................................................................... ............................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggtttt........................................................................................................................................................... Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 9.0E-32 bit: 139.0 Len: 138 Query Start:140 Query End:277 Subject Strand: NEGATIVE Subject Start: 691 Subject End: 828 ...........................................................................................................................................attttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatg..................................................................................................................................................... ...........................................................................................................................................attttgtaaaaataattctgttaaaaagtgataactgtactttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatacaaaacaataggttttgtaatg..................................................................................................................................................... Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 4.0E-31 bit: 137.0 Len: 109 Query Start:163 Query End:271 Subject Strand: NEGATIVE Subject Start: 107 Subject End: 215 ..................................................................................................................................................................aaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt........................................................................................................................................................... ..................................................................................................................................................................aaaaatgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacagccgcttttgccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt........................................................................................................................................................... Subject: pint_PI1937_PI1938|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1891147,1891993]|847 HSP 1 e-value: 2.0E-29 bit: 131.0 Len: 122 Query Start:146 Query End:267 Subject Strand: POSITIVE Subject Start: 507 Subject End: 628 .................................................................................................................................................taaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaatagg............................................................................................................................................................... .................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaatagg............................................................................................................................................................... Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 2.0E-29 bit: 131.0 Len: 138 Query Start:141 Query End:278 Subject Strand: POSITIVE Subject Start: 113 Subject End: 250 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgc.................................................................................................................................................... ............................................................................................................................................ttttgtaaagataatttctttgaaaaatggtaatttcgatttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgc.................................................................................................................................................... Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 9.0E-29 bit: 129.0 Len: 137 Query Start:142 Query End:278 Subject Strand: NEGATIVE Subject Start: 380 Subject End: 516 .............................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgc.................................................................................................................................................... .............................................................................................................................................tttgtaaagataattctgatgaaaaatgataatttcgatttggcattgcgaaagcggctgttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatgc.................................................................................................................................................... Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 1.0E-27 bit: 125.0 Len: 119 Query Start:142 Query End:260 Subject Strand: POSITIVE Subject Start: 257 Subject End: 375 .............................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaa...................................................................................................................................................................... .............................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa...................................................................................................................................................................... Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 137 Query Start:139 Query End:275 Subject Strand: NEGATIVE Subject Start: 170 Subject End: 306 ..........................................................................................................................................gattttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataa....................................................................................................................................................... ..........................................................................................................................................gattttgtaaagataattcggagggaaaatgataatttcgatttgacgttgcgaaagcgtatgttttgcgatgcaaaagagccgcttttaccgtgcaaaacctacgcttttacaatgcaaaacaataggttttataa....................................................................................................................................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 3.0E-25 bit: 117.0 Len: 131 Query Start:141 Query End:271 Subject Strand: POSITIVE Subject Start: 91 Subject End: 221 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt........................................................................................................................................................... ............................................................................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggtttt........................................................................................................................................................... Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 3.0E-22 bit: 107.0 Len: 138 Query Start:141 Query End:278 Subject Strand: POSITIVE Subject Start: 10 Subject End: 147 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgc.................................................................................................................................................... ............................................................................................................................................ttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgc.................................................................................................................................................... Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 131 Query Start:141 Query End:271 Subject Strand: NEGATIVE Subject Start: 41 Subject End: 171 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt........................................................................................................................................................... ............................................................................................................................................ttttgtaaagataattctgatgaaaaacaataatttcgttttgacgttgcgaaagcggctcttttacaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggtttt........................................................................................................................................................... Subject: pint_PI2056_PI2057|conserved hypothetical protein:conserved hypothetical protein; possible metal-dependent membrane protease|POSITIVE:POSITIVE|[2014489,2015078]|590 HSP 1 e-value: 8.0E-20 bit: 99.6 Len: 138 Query Start:139 Query End:276 Subject Strand: POSITIVE Subject Start: 339 Subject End: 476 ..........................................................................................................................................gattttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataat...................................................................................................................................................... ..........................................................................................................................................gattttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaat...................................................................................................................................................... Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 5.0E-18 bit: 93.7 Len: 131 Query Start:141 Query End:271 Subject Strand: NEGATIVE Subject Start: 411 Subject End: 541 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt........................................................................................................................................................... ............................................................................................................................................ttttgtaaagataattacattgaaaattgataatttcgttttgacgttgcgaaagcggctgttttgcgaggtaaaacctacgcttttgccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt........................................................................................................................................................... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 131 Query Start:141 Query End:271 Subject Strand: NEGATIVE Subject Start: 332 Subject End: 462 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt........................................................................................................................................................... ............................................................................................................................................ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagcagctcttttgcaacgcaaaacctatgcttttaccgtgcaaaacagccgcttttaggatgcaaaacaataggtttt........................................................................................................................................................... Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 123 Query Start:141 Query End:263 Subject Strand: POSITIVE Subject Start: 226 Subject End: 348 ............................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaa................................................................................................................................................................... ............................................................................................................................................ttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa................................................................................................................................................................... HSP 2 e-value: 1.0E-9 bit: 65.9 Len: 57 Query Start:192 Query End:248 Subject Strand: NEGATIVE Subject Start: 277 Subject End: 333 ...............................................................................................................................................................................................aaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttt.................................................................................................................................................................................. ...............................................................................................................................................................................................aaagcggctgttttgcaaggtaaaagagccgcttttggcgtgcaaaacctacgcttt.................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAGACUACCGCUCCUAAAAACGUUACAUCAAACACUAUGAUUUAGUAGGACUUCAUCAAGGCAAACAGCUCUCUUUCUUCGCCUGCGACCGAUGCUAAAACAACUGCGAUUUUGUAAAGAUAAUUCUCUUAAAAAGUGAUAACUGCGCUUUGACAUUGCGAAAGCGGCUCUUUUGCAAUGCAAAACAGCCGCUUUUACCGUGCAAAACCUACGCUUUUGGAACGCAAAACAAUAGGUUUUAUAAUGCCUUAAAAGUGAGAUAGUUACACAACGGUAACACUUGUGAAAAAUAUUUACACCUUUAUUGCCUUCUUUUUAUUUAUGCUAUGAGAUGCAAAGGGGUAAUUUACACCUGUUUUUAGCGAAUUUCCAAUGUUUUUAAAAUGACAGCAUCA .........(((..((((((((((....................(((((.........((((.....)).)).........)))))......((((((((....((((.(((.(((.((((((............(((.((((((((((((..(((.(..(((((((((.((((((...)))))).)))))))))..).))).((((((((...(((((.....)))))...))))))))...........))))))...)))))))))...(((((....((((((.....))))))......)))))......)))))).)))...))).))))..((((((...))).)))..)))))))).......)))))))))).......))).... (-85.97) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAUGCUGUCAUUUUAAAAACAUUGGAAAUUCGCUAAAAACAGGUGUAAAUUACCCCUUUGCAUCUCAUAGCAUAAAUAAAAAGAAGGCAAUAAAGGUGUAAAUAUUUUUCACAAGUGUUACCGUUGUGUAACUAUCUCACUUUUAAGGCAUUAUAAAACCUAUUGUUUUGCGUUCCAAAAGCGUAGGUUUUGCACGGUAAAAGCGGCUGUUUUGCAUUGCAAAAGAGCCGCUUUCGCAAUGUCAAAGCGCAGUUAUCACUUUUUAAGAGAAUUAUCUUUACAAAAUCGCAGUUGUUUUAGCAUCGGUCGCAGGCGAAGAAAGAGAGCUGUUUGCCUUGAUGAAGUCCUACUAAAUCAUAGUGUUUGAUGUAACGUUUUUAGGAGCGGUAGUCUU .((((((((..((((((((((...(((.....(((((((..(((((((((.......)))))))))....((..........((((((..((((..((((.................(((((......)))))..............(((((..((((((((((.(((((........)))))))))))))))....(..(((((((((.((((((...)))))).)))))))))..).)))))...))))..))))..)))))).(((((....)))))........)).....)))))))....((((.(((((((.(........).)))))))))))....)))......((((.......)))).....)))))))))))))))).)).. (-101.60) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 918 230 181 116 67 pint:PI0851|5end_hypothetical_protein_784310..784540_POSITIVE 892 230 181 72 23 pint:PI0755|5end_hypothetical_protein_686691..686921_POSITIVE 856 240 191 71 22 pint:PI0200|5end_hypothetical_protein_191545..191775_POSITIVE 855 220 171 106 57 pint:PI0841|5end_hypothetical_protein_775406..775636_POSITIVE 837 220 171 216 167 pint:PI0159|5end_hypothetical_protein_151273..151503_POSITIVE 837 220 171 128 79 pint:PI0157|5end_hypothetical_protein_151185..151415_POSITIVE 835 180 131 170 121 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 819 170 121 209 160 pint:PI0202|5end_DNA_helicase_191753..191983_POSITIVE 795 218 171 231 184 pint:PI0842|5end_5-formyltetrahydrofolate_cyclo-ligase_775533..775763_POSITIVE 792 169 121 154 106 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 783 220 171 51 2 pint:PI0182|5end_hypothetical_protein_174093..174323_POSITIVE 775 218 171 85 38 pint:PI2128|5end_hypothetical_protein_2076512..2076742_POSITIVE 765 190 141 175 126 pint:PI2111|5end_conserved_hypothetical_protein_2062771..2063001_POSITIVE 752 200 151 201 152 pint:PI1486|5end_alginate_O-acetylation_protein_1405507..1405737_POSITIVE 744 240 191 99 50 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 744 240 191 56 7 pint:PI1905|5end_hypothetical_protein_1847628..1847858_POSITIVE 744 240 191 71 22 pint:PI0061|5end_hypothetical_protein_60500..60730_POSITIVE 744 240 191 71 22 pint:PI0004|5end_hypothetical_protein_6199..6429_POSITIVE 737 210 161 77 28 pint:PI1679|5end_hypothetical_protein_1594744..1594974_POSITIVE 735 180 131 200 151 pint:PI2003|5end_hypothetical_protein_1960823..1961053_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 819 170 121 111 62 pint:PI0200|3end_hypothetical_protein_191735..191885_POSITIVE 815 180 131 121 72 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 798 210 161 151 102 pint:PI0158|3end_hypothetical_protein_151298..151448_POSITIVE 796 170 121 151 102 pint:PI0104|3end_hypothetical_protein_99346..99496_POSITIVE 787 180 131 81 32 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 771 200 151 141 92 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 770 200 151 141 92 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 744 240 191 141 92 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 744 240 191 54 5 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 744 210 161 145 96 pint:PI0182|3end_hypothetical_protein_174277..174427_POSITIVE 742 210 161 151 102 pint:PI2011|3end_hypothetical_protein_1970730..1970880_POSITIVE 723 160 111 147 98 pint:PI0099|3end_hypothetical_protein_95777..95927_POSITIVE 718 200 151 151 102 pint:PI1601|3end_hypothetical_protein_1530454..1530604_POSITIVE 708 170 121 121 72 pint:PI1076|3end_hypothetical_protein_999065..999215_POSITIVE 707 209 161 127 76 pint:PI1356|3end_hypothetical_protein_1273340..1273490_POSITIVE 705 160 111 101 52 pint:PI0004|3end_hypothetical_protein_6389..6539_POSITIVE 702 208 161 50 3 pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE 690 169 121 114 66 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 681 240 193 48 1 pint:PI0669|3end_hypothetical_protein_611147..611297_POSITIVE 668 240 191 54 5 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE