Origin IGS: gcctgcccacagcgaatctatctcaatctcttcaatataatcggcatatttctgcataatcgttcttttgtttcttcgcaaatatagcatttttctttcaatttaagcctaaatagtgtttttttaacgcaaacagcagcgactgttcagaacattcatatatcatacagaaacattgagggcgcaccttttcagatgcgccctctccgatttgtagattatatttaagtaggttcttggttttcttcagacttttcgaaaaatgattaaaatctactcagcttcagtttaccttcagggtttgtagacagtcttgtctttcttttttgtggtgccccgcgtttcaacaacgaagggcatcaacttattcatcacatagttacattaacttaatctgtagaaaaaagcatatattgtatttaaaaagttcattactaacttctgaagtatccgctgaacttcgattataaaacggcgaaaaaagcaaaacccctactctatccgtataattaacattcttttatactattattttcaatccccaacactacgaaatcacataaccagctaataaacaacgatatacaaagaataaagcaaaagaacttttttctaaaagaaataccaaccccattctacgcacaagctatgttaattttcaaaggcttattttgatatgtgagagaattgctgtaaatttgcaataaaataagaacaaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tttgttcttattttattgcaaatttacagcaattctctcacatatcaaaataagcctttgaaaattaacatagcttgtgcgtagaatggggttggtatttcttttagaaaaaagttcttttgctttattctttgtatatcgttgtttattagctggttatgtgatttcgtagtgttggggattgaaaataatagtataaaagaatgttaattatacggatagagtaggggttttgcttttttcgccgttttataatcgaagttcagcggatacttcagaagttagtaatgaactttttaaatacaatatatgcttttttctacagattaagttaatgtaactatgtgatgaataagttgatgcccttcgttgttgaaacgcggggcaccacaaaaaagaaagacaagactgtctacaaaccctgaaggtaaactgaagctgagtagattttaatcatttttcgaaaagtctgaagaaaaccaagaacctacttaaatataatctacaaatcggagagggcgcatctgaaaaggtgcgccctcaatgtttctgtatgatatatgaatgttctgaacagtcgctgctgtttgcgttaaaaaaacactatttaggcttaaattgaaagaaaaatgctatatttgcgaagaaacaaaagaacgattatgcagaaatatgccgattatattgaagagattgagatagattcgctgtgggcaggc Mask Tandem Repeat Region ================================================ gcctgcccacagcgaatctatctcaatctcttcaatataatcggcatatttctgcataatcgttcttttgtttcttcgcaaatatagcatttttctttcaatttaagcctaaatagtgtttttttaacgcaaacagcagcgactgttcagaacattcatatatcatacagaaacattgagggcgcaccttttcagatgcgccctctccgatttgtagattatatttaagtaggttcttggttttcttcagacttttcgaaaaatgattaaaatctactcagcttcagtttaccttcagggtttgtagacagtcttgtctttcttttttgtggtgccccgcgtttcaacaacgaagggcatcaacttattcatcacatagttacattaacttaatctgtagaaaaaagcatatattgtatttaaaaagttcattactaacttctgaagtatccgctgaacttcgattataaaacggcgaaaaaagcaaaacccctactctatccgtataattaacattcttttatactattattttcaatccccaacactacgaaatcacataaccagctaataaacaacgatatacaaagaataaagcaaaagaacttttttctaaaagaaataccaaccccattctacgcacaagctatgttaattttcaaaggcttattttgatatgtgagagaattgctgtaaatttgcaataaaataagaacaaa Find is-nt database================================================ Query_seq: PI2008:PI2009|PI2008:PI2009: ABC transporter, ATP-binding protein:ribosome-binding factor A:->->:1968022..1968740 719 gcctgcccacagcgaatctatctcaatctcttcaatataatcggcatatttctgcataatcgttcttttgtttcttcgcaaatatagcatttttctttcaatttaagcctaaatagtgtttttttaacgcaaacagcagcgactgttcagaacattcatatatcatacagaaacattgagggcgcaccttttcagatgcgccctctccgatttgtagattatatttaagtaggttcttggttttcttcagacttttcgaaaaatgattaaaatctactcagcttcagtttaccttcagggtttgtagacagtcttgtctttcttttttgtggtgccccgcgtttcaacaacgaagggcatcaacttattcatcacatagttacattaacttaatctgtagaaaaaagcatatattgtatttaaaaagttcattactaacttctgaagtatccgctgaacttcgattataaaacggcgaaaaaagcaaaacccctactctatccgtataattaacattcttttatactattattttcaatccccaacactacgaaatcacataaccagctaataaacaacgatatacaaagaataaagcaaaagaacttttttctaaaagaaataccaaccccattctacgcacaagctatgttaattttcaaaggcttattttgatatgtgagagaattgctgtaaatttgcaataaaataagaacaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI2008:PI2009|PI2008:PI2009: ABC transporter, ATP-binding protein:ribosome-binding factor A:->->:1968022..1968740 719 gcctgcccacagcgaatctatctcaatctcttcaatataatcggcatatttctgcataatcgttcttttgtttcttcgcaaatatagcatttttctttcaatttaagcctaaatagtgtttttttaacgcaaacagcagcgactgttcagaacattcatatatcatacagaaacattgagggcgcaccttttcagatgcgccctctccgatttgtagattatatttaagtaggttcttggttttcttcagacttttcgaaaaatgattaaaatctactcagcttcagtttaccttcagggtttgtagacagtcttgtctttcttttttgtggtgccccgcgtttcaacaacgaagggcatcaacttattcatcacatagttacattaacttaatctgtagaaaaaagcatatattgtatttaaaaagttcattactaacttctgaagtatccgctgaacttcgattataaaacggcgaaaaaagcaaaacccctactctatccgtataattaacattcttttatactattattttcaatccccaacactacgaaatcacataaccagctaataaacaacgatatacaaagaataaagcaaaagaacttttttctaaaagaaataccaaccccattctacgcacaagctatgttaattttcaaaggcttattttgatatgtgagagaattgctgtaaatttgcaataaaataagaacaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI2008:PI2009|PI2008:PI2009: ABC transporter, ATP-binding protein:ribosome-binding factor A:->->:1968022..1968740 719 gcctgcccacagcgaatctatctcaatctcttcaatataatcggcatatttctgcataatcgttcttttgtttcttcgcaaatatagcatttttctttcaatttaagcctaaatagtgtttttttaacgcaaacagcagcgactgttcagaacattcatatatcatacagaaacattgagggcgcaccttttcagatgcgccctctccgatttgtagattatatttaagtaggttcttggttttcttcagacttttcgaaaaatgattaaaatctactcagcttcagtttaccttcagggtttgtagacagtcttgtctttcttttttgtggtgccccgcgtttcaacaacgaagggcatcaacttattcatcacatagttacattaacttaatctgtagaaaaaagcatatattgtatttaaaaagttcattactaacttctgaagtatccgctgaacttcgattataaaacggcgaaaaaagcaaaacccctactctatccgtataattaacattcttttatactattattttcaatccccaacactacgaaatcacataaccagctaataaacaacgatatacaaagaataaagcaaaagaacttttttctaaaagaaataccaaccccattctacgcacaagctatgttaattttcaaaggcttattttgatatgtgagagaattgctgtaaatttgcaataaaataagaacaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gcctgcccacagcgaatctatctcaatctcttcaatataatcggcatatttctgcataatcgttcttttgtttcttcgcaaatatagcatttttctttcaatttaagcctaaatagtgtttttttaacgcaaacagcagcgactgttcagaacattcatatatcatacagaaacattgagggcgcaccttttcagatgcgccctctccgatttgtagattatatttaagtaggttcttggttttcttcagacttttcgaaaaatgattaaaatctactcagcttcagtttaccttcagggtttgtagacagtcttgtctttcttttttgtggtgccccgcgtttcaacaacgaagggcatcaacttattcatcacatagttacattaacttaatctgtagaaaaaagcatatattgtatttaaaaagttcattactaacttctgaagtatccgctgaacttcgattataaaacggcgaaaaaagcaaaacccctactctatccgtataattaacattcttttatactattattttcaatccccaacactacgaaatcacataaccagctaataaacaacgatatacaaagaataaagcaaaagaacttttttctaaaagaaataccaaccccattctacgcacaagctatgttaattttcaaaggcttattttgatatgtgagagaattgctgtaaatttgcaataaaataagaacaaa Predict ORF larger than 30AA ================================================ Protein_Len: 47 Strand: + Start: 327 End: 467 ...................................................................................................................................................................................................................................................................................................................................... M W C P A F Q Q R R A S T Y S S H S Y I N L I C R K K H I L Y L K S S L L T S E V S A E L R L ............................................................................................................................................................................................................................................................ Protein_Len: 35 Strand: + Start: 464 End: 568 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M I K R R K K Q N P Y S I R I I N I L L Y Y Y F Q S P T L R N H I T S ....................................................................................................................................................... Protein_Len: 50 Strand: + Start: 523 End: 672 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M L L F S I P N T T K S H N Q L I N N D I Q R I K Q K N F F L K E I P T P F Y A Q A M L I F K G L F ............................................... Protein_Len: 31 Strand: - Start: 551 End: 643 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... S I V Y G A L L C R Y V F F L A F S S K E L L F V L G M R R M ............................................................................ Protein_Len: 37 Strand: - Start: 513 End: 623 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ C E K I S N N E I G L V V F D C L W S I F L S I C L I F C F F K K R F S M ................................................................................................ Protein_Len: 35 Strand: - Start: 383 End: 487 .............................................................................................................................................................................................................................................................................................................................................................................................. M L K I Q L F F C I N Y K F L E N S V E S T D A S S R N Y F P S F L M ........................................................................................................................................................................................................................................ Protein_Len: 50 Strand: - Start: 101 End: 250 .................................................................................................... N L G L Y H K K L A F L L S Q E S C E Y I M C F C Q P R V K E S A G E G I Q L N Y K L L N K T K K M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: - Start: 1 End: 102 G A W L S D I E I E E I Y D A Y K Q M I T R K N R R L Y L M K R E M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... gcctgcccacagcgaatctatctcaatctcttcaatataatcggcatatttctgcataatcgttcttttgtttcttcgcaaatatagcatttttctttcaatttaagcctaaatagtgtttttttaacgcaaacagcagcgactgttcagaacattcatatatcatacagaaacattgagggcgcaccttttcagatgcgccctctccgatttgtagattatatttaagtaggttcttggttttcttcagacttttcgaaaaatgattaaaatctactcagcttcagtttaccttcagggtttgtagacagtcttgtctttcttttttgtggtgccccgcgtttcaacaacgaagggcatcaacttattcatcacatagttacattaacttaatctgtagaaaaaagcatatattgtatttaaaaagttcattactaacttctgaagtatccgctgaacttcgattataaaacggcgaaaaaagcaaaacccctactctatccgtataattaacattcttttatactattattttcaatccccaacactacgaaatcacataaccagctaataaacaacgatatacaaagaataaagcaaaagaacttttttctaaaagaaataccaaccccattctacgcacaagctatgttaattttcaaaggcttattttgatatgtgagagaattgctgtaaatttgcaataaaataagaacaaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gcctgcccacagcgaatctatctcaatctcttcaatataatcggcatatttctgcataatcgttcttttgtttcttcgcaaatatagcatttttctttcaatttaagcctaaatagtgtttttttaacgcaaacagcagcgactgttcagaacattcatatatcatacagaaacattgagggcgcaccttttcagatgcgccctctccgatttgtagattatatttaagtaggttcttggttttcttcagacttttcgaaaaatgattaaaatctactcagcttcagtttaccttcagggtttgtagacagtcttgtctttcttttttgtggtgccccgcgtttcaacaacgaagggcatcaacttattcatcacatagttacattaacttaatctgtagaaaaaagcatatattgtatttaaaaagttcattactaacttctgaagtatccgctgaacttcgattataaaacggcgaaaaaagcaaaacccctactctatccgtataattaacattcttttatactattattttcaatccccaacactacgaaatcacataaccagctaataaacaacgatatacaaagaataaagcaaaagaacttttttctaaaagaaataccaaccccattctacgcacaagctatgttaattttcaaaggcttattttgatatgtgagagaattgctgtaaatttgcaataaaataagaacaaa Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 100 HP_score: -11.8 Tail_Score: -4.16301 Start: 174 End: 209 Full_Region: atataatctacaaat cggagagggcgcatct gaaa aggtgcgccctcaatg tttctgtatgatata .............................................................................................................................................................................cggagagggcgcatctgaaaaggtgcgccctcaatg.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 93 HP_score: -14.3 Tail_Score: -2.79517 Start: 177 End: 206 Full_Region: taatctacaaatcgg agagggcgcatct gaaa aggtgcgccctca atgtttctgtatgat ................................................................................................................................................................................agagggcgcatctgaaaaggtgcgccctca................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 76 HP_score: -4.4 Tail_Score: -5.1471 Start: 307 End: 318 Full_Region: CCTTCAGGGTTTGTA GACA GTCT TGTC TTTCTTTTTTGTGGT ..................................................................................................................................................................................................................................................................................................................GACAGTCTTGTC................................................................................................................................................................................................................................................................................................................................................................................................................. Find igs database================================================ Query_seq: PI2008:PI2009|PI2008:PI2009: ABC transporter, ATP-binding protein:ribosome-binding factor A:->->:1968022..1968740 719 gcctgcccacagcgaatctatctcaatctcttcaatataatcggcatatttctgcataatcgttcttttgtttcttcgcaaatatagcatttttctttcaatttaagcctaaatagtgtttttttaacgcaaacagcagcgactgttcagaacattcatatatcatacagaaacattgagggcgcaccttttcagatgcgccctctccgatttgtagattatatttaagtaggttcttggttttcttcagacttttcgaaaaatgattaaaatctactcagcttcagtttaccttcagggtttgtagacagtcttgtctttcttttttgtggtgccccgcgtttcaacaacgaagggcatcaacttattcatcacatagttacattaacttaatctgtagaaaaaagcatatattgtatttaaaaagttcattactaacttctgaagtatccgctgaacttcgattataaaacggcgaaaaaagcaaaacccctactctatccgtataattaacattcttttatactattattttcaatccccaacactacgaaatcacataaccagctaataaacaacgatatacaaagaataaagcaaaagaacttttttctaaaagaaataccaaccccattctacgcacaagctatgttaattttcaaaggcttattttgatatgtgagagaattgctgtaaatttgcaataaaataagaacaaa Intra-Species Hit: Count: 1 Min: 1 Max: 719 Len: 719 Subject: pint_PI2008_PI2009| ABC transporter, ATP-binding protein:ribosome-binding factor A|POSITIVE:POSITIVE|[1968022,1968740]|719 HSP 1 e-value: 0.0 bit: 1384.0 Len: 719 Query Start:1 Query End:719 Subject Strand: POSITIVE Subject Start: 1 Subject End: 719 gcctgcccacagcgaatctatctcaatctcttcaatataatcggcatatttctgcataatcgttcttttgtttcttcgcaaatatagcatttttctttcaatttaagcctaaatagtgnnnnnnnaacgcaaacagcagcgactgttcagaacattcatatatcatacagaaacattgagggcgcaccttttcagatgcgccctctccgatttgtagattatatttaagtaggttcttggttttcttcagacttttcgaaaaatgattaaaatctactcagcttcagtttaccttcagggtttgtagacagtcttgtctttcttttttgtggtgccccgcgtttcaacaacgaagggcatcaacttattcatcacatagttacattaacttaatctgtagaaaaaagcatatattgtatttaaaaagttcattactaacttctgaagtatccgctgaacttcgattataaaacggcgaaaaaagcaaaacccctactctatccgtataattaacattcttttatactattattttcaatccccaacactacgaaatcacataaccagctaataaacaacgatatacaaagaataaagcaaaagaacttttttctaaaagaaataccaaccccattctacgcacaagctatgttaattttcaaaggcttattttgatatgtgagagaattgctgtaaatttgcaataaaataagaacaaa gcctgcccacagcgaatctatctcaatctcttcaatataatcggcatatttctgcataatcgttcttttgtttcttcgcaaatatagcatttttctttcaatttaagcctaaatagtgtttttttaacgcaaacagcagcgactgttcagaacattcatatatcatacagaaacattgagggcgcaccttttcagatgcgccctctccgatttgtagattatatttaagtaggttcttggttttcttcagacttttcgaaaaatgattaaaatctactcagcttcagtttaccttcagggtttgtagacagtcttgtctttcttttttgtggtgccccgcgtttcaacaacgaagggcatcaacttattcatcacatagttacattaacttaatctgtagaaaaaagcatatattgtatttaaaaagttcattactaacttctgaagtatccgctgaacttcgattataaaacggcgaaaaaagcaaaacccctactctatccgtataattaacattcttttatactattattttcaatccccaacactacgaaatcacataaccagctaataaacaacgatatacaaagaataaagcaaaagaacttttttctaaaagaaataccaaccccattctacgcacaagctatgttaattttcaaaggcttattttgatatgtgagagaattgctgtaaatttgcaataaaataagaacaaa Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GCCUGCCCACAGCGAAUCUAUCUCAAUCUCUUCAAUAUAAUCGGCAUAUUUCUGCAUAAUCGUUCUUUUGUUUCUUCGCAAAUAUAGCAUUUUUCUUUCAAUUUAAGCCUAAAUAGUGUUUUUUUAACGCAAACAGCAGCGACUGUUCAGAACAUUCAUAUAUCAUACAGAAACAUUGAGGGCGCACCUUUUCAGAUGCGCCCUCUCCGAUUUGUAGAUUAUAUUUAAGUAGGUUCUUGGUUUUCUUCAGACUUUUCGAAAAAUGAUUAAAAUCUACUCAGCUUCAGUUUACCUUCAGGGUUUGUAGACAGUCUUGUCUUUCUUUUUUGUGGUGCCCCGCGUUUCAACAACGAAGGGCAUCAACUUAUUCAUCACAUAGUUACAUUAACUUAAUCUGUAGAAAAAAGCAUAUAUUGUAUUUAAAAAGUUCAUUACUAACUUCUGAAGUAUCCGCUGAACUUCGAUUAUAAAACGGCGAAAAAAGCAAAACCCCUACUCUAUCCGUAUAAUUAACAUUCUUUUAUACUAUUAUUUUCAAUCCCCAACACUACGAAAUCACAUAACCAGCUAAUAAACAACGAUAUACAAAGAAUAAAGCAAAAGAACUUUUUUCUAAAAGAAAUACCAACCCCAUUCUACGCACAAGCUAUGUUAAUUUUCAAAGGCUUAUUUUGAUAUGUGAGAGAAUUGCUGUAAAUUUGCAAUAAAAUAAGAACAAA ((.((....))))..............................(((......)))......((((((...(((.((.((((((((((((.(((((((((((..(((((((.....(((((.....))))).((((..(((...(((..((((......((((((.............(((((((((.((....)).)))))))))...(((((((((..........((((((.....(((((((((.....((((((........(((.((((.....((.((((((....((((((((((.((((((......)))...(((((((.((((((((..((((.....))))..))))))))...........(((.(((((...))))).....)))..))))))).........................))).))).))))))).....))))))))..)))).))).....))))))))).))))))))))))......((((((...........)))))).....................)))).)))))......................))))))...((((.((((........)))).))))...................))))..)))...))).)))).........)))))))..)))).....))))))).)))))))..))))))).)))..))))))... (-150.12) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUGUUCUUAUUUUAUUGCAAAUUUACAGCAAUUCUCUCACAUAUCAAAAUAAGCCUUUGAAAAUUAACAUAGCUUGUGCGUAGAAUGGGGUUGGUAUUUCUUUUAGAAAAAAGUUCUUUUGCUUUAUUCUUUGUAUAUCGUUGUUUAUUAGCUGGUUAUGUGAUUUCGUAGUGUUGGGGAUUGAAAAUAAUAGUAUAAAAGAAUGUUAAUUAUACGGAUAGAGUAGGGGUUUUGCUUUUUUCGCCGUUUUAUAAUCGAAGUUCAGCGGAUACUUCAGAAGUUAGUAAUGAACUUUUUAAAUACAAUAUAUGCUUUUUUCUACAGAUUAAGUUAAUGUAACUAUGUGAUGAAUAAGUUGAUGCCCUUCGUUGUUGAAACGCGGGGCACCACAAAAAAGAAAGACAAGACUGUCUACAAACCCUGAAGGUAAACUGAAGCUGAGUAGAUUUUAAUCAUUUUUCGAAAAGUCUGAAGAAAACCAAGAACCUACUUAAAUAUAAUCUACAAAUCGGAGAGGGCGCAUCUGAAAAGGUGCGCCCUCAAUGUUUCUGUAUGAUAUAUGAAUGUUCUGAACAGUCGCUGCUGUUUGCGUUAAAAAAACACUAUUUAGGCUUAAAUUGAAAGAAAAAUGCUAUAUUUGCGAAGAAACAAAAGAACGAUUAUGCAGAAAUAUGCCGAUUAUAUUGAAGAGAUUGAGAUAGAUUCGCUGUGGGCAGGC .((((.(((.((((.(((........((((.((((..((((((((((((.......)))))......((((((((((...((((((..((((..((((((......(((((((((.((((((((((((((...(((((.((((.(((....((((.((((.((((..(.........)..))))...))))))))...))).)))).....)))))))))))))))))))....)))))))))..............((((((((......(((.....)))......))))))))..)))))).......))))..))))))....)))))).))))...))))))).))))..)))).((((((.((((.....)))).))))))...))).)))).)))))))..((((((((..(((.....))).......(((.((((..(((((((((.(((((((.......))))))).............(((.(((((((((...........((((((((((((....)))))))))))).(((((((((((((((.......((((((......((((.((.....))...................(((.....((....)).....)))......)))).........)))))))))))))))))))))...))))))))).))).)))))))))..))))))))))))))).. (-189.37) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 460 204 170 195 158 pint:PI1701|5end_sensor_histidine_kinase_1619312..1619542_POSITIVE 379 202 169 126 93 pint:PI0826|5end_hypothetical_protein_763738..763968_POSITIVE 379 202 169 106 73 pint:PI0825|5end_hypothetical_protein_763718..763948_POSITIVE 372 339 291 231 172 pint:PI0285|5end_succinyltransferase_protein_270097..270327_POSITIVE 368 210 168 195 155 pint:PI2115|5end_hypothetical_protein_2064966..2065196_POSITIVE 358 217 173 124 62 pint:PI0938|5end_hypothetical_protein_869345..869575_POSITIVE 336 515 474 148 103 pint:PI2154|5end_leucyl-tRNA_synthetase_2099861..2100091_POSITIVE 320 215 173 197 158 pint:PI0736|5end_transcriptional_regulator,_TetR_family_670580..670810_POSITIVE 311 206 165 156 104 pint:PI1086|5end_pyruvate:ferredoxin_oxidoreductase_1006602..1006832_POSITIVE 309 80 33 60 7 pint:PI0307|5end_RNA_polymerase_sigma-70_factor,_ECF_subfamily_290042..290272_POSITIVE 303 358 313 231 188 pint:PI1630|5end_hypothetical_protein_1552127..1552357_POSITIVE 303 330 281 112 54 pint:PI0342|5end_hypothetical_protein_317556..317786_POSITIVE 303 330 281 61 3 pint:PI0343|5end_hypothetical_protein_317505..317735_POSITIVE 300 216 174 220 169 pint:PI2016|5end_ribosomal_large_subunit_pseudouridine_synthase_D_1973768..1973998_POSITIVE 298 218 179 199 159 pint:PI0707|5end_conserved_hypothetical_protein;_possible_integral_membrane_protein_643358..643588_POSITIVE 297 340 293 167 104 pint:PI0742|5end_hypothetical_protein_672394..672624_POSITIVE 295 368 328 100 53 pint:PI0985|5end_aspartyl-tRNA_synthetase_910174..910404_POSITIVE 294 214 172 160 112 pint:PI0052|5end_hypothetical_protein_52312..52542_POSITIVE 293 358 311 172 106 pint:PI1784|5end_possible_dTDP-glucose_4,6-dehydratase,_NAD-dependent_epimerase/dehydratase_family_1716201..1716431_POSITIVE 292 89 41 160 100 pint:PI0272|5end_conserved_hypothetical_protein_262621..262851_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 460 204 170 46 9 pint:PI1700|3end_hypothetical_protein_1619243..1619393_POSITIVE 379 202 169 48 15 pint:PI0824|3end_large_conductance_mechanosensitive_channel_protein_763740..763890_POSITIVE 348 320 272 121 78 pint:PI0445|3end_conserved_hypothetical_protein_413359..413509_POSITIVE 339 319 272 151 109 pint:PI0444|3end_50S_ribosomal_protein_L7/L12_413390..413540_POSITIVE 320 215 173 128 89 pint:PI0735|3end_ABC_transporter,_ATP-binding_/_permease_670591..670741_POSITIVE 316 340 291 132 61 pint:PI1651|3end_hypothetical_protein_1564512..1564662_POSITIVE 304 99 61 78 36 pint:PI0335|3end_hypothetical_protein_314420..314570_POSITIVE 303 330 281 91 33 pint:PI0341|3end_conserved_hypothetical_protein_317615..317765_POSITIVE 295 86 43 76 39 pint:PI1003|3end_conserved_hypothetical_protein_925718..925868_POSITIVE 290 226 181 80 15 pint:PI0358|3end_hypothetical_protein_328105..328255_POSITIVE 289 358 322 36 1 pint:PI1635|3end_hypothetical_protein_1554306..1554456_POSITIVE 287 219 178 126 68 pint:PI1916|3end_conserved_hypothetical_protein_1860740..1860890_POSITIVE 287 217 182 42 1 pint:PI0666|3end_chorismate_synthase_610171..610321_POSITIVE 286 340 298 119 68 pint:PI0191|3end_O-methyltransferase_181785..181935_POSITIVE 282 89 43 115 64 pint:PI1704|3end_50S_ribosomal_protein_L32_1621680..1621830_POSITIVE 281 357 328 144 114 pint:PI0789|3end_NAD-utilizing_dehydrogenase_728385..728535_POSITIVE 278 312 278 54 6 pint:PI0858|3end_carbamyl_phosphate_synthase,_large_subunit_793394..793544_POSITIVE 277 210 181 141 111 pint:PI1210|3end_phosphoribosylaminoimidazole-succinocarboxamide_synthase_(SAICAR_synthetase)_1129959..1130109_POSITIVE 277 337 291 143 94 pint:PI0563|3end_possible_integral_membrane_protein_511179..511329_POSITIVE 273 359 314 148 110 pint:PI0614|3end_glucose-6-phosphate_isomerase_564593..564743_POSITIVE