Origin IGS: tagagaaaaaacctgtactggaaagacacttcttatctactctatttcaacgacttagcagtgcgtgaaaaatatgacgtcatatttgccagaatatgacgtcatatttgctcgaatatgacgtcatgcttatctgaacatgacgtcatgcttgtctgaatatggcgtcatacttgtctgaatatgacatcatgcttatccgaacatggcgtcatgcttgtctgaatatggcaacataattgtccaaatatggcatcataactgtccgaatatgataccatatttatcagaaaaattaaagaagtagatgtggaaaacggaaataacagcttactcctcgcagtttccgtctaagaaatctcttaaatcggctttcaaacgcaaataaggttcactgttggtatagcccacgttgcgtcgcagcattggtacaatttcttctatgctgtgattgtagtttgaaagttcgtttctctgttgcacaatgtgtcgcgcattgcgataaatctcctgttcatggtcgcgtataagcttgtcgcacacccttttcagagcgggcaccaccacattgtcgaacaaatgatgcccctgtatatacaaataagtggtttgtgccgttactcccaatcgctttatatcctctttcacagccaagtaggtagccttggcatcgggatattcgtgctggaactgccgtatcttccttgccacctttcggcgcaacttctctatgttcgcataagccgtctgaaagctgaagttgcccatttctatgatatggttgaaatcggtaatggtgaactttccgtaaattcctttcctgtaaaaccatacgctccacacgaacaacggaaaaatagcctcgctgtaaagacgcagatactcttcaaaatcgaagatggcacggtcgttcagcgtaacagcaacgcttacatcgtgcaggctggcggcatagcattgcaggttttcgatggcgtatgcataggtgtgaaacacgtaaggactatggtttacggcgcgcgacatcgacgtggaaccttgcaggagatagtcgtagtcggcatctacacaggctatcatactttcgccaacattttccgaaatcaaattcatcagcaccgagcgttttcccttcgtcagtgtgtggcgcgaaggcagcattacttcaaaataacggtgcttgttctcgaaactgctaagtgccgtgcgccaaaagaatatatcgtcgtacgactccacatacgccactatccgctttcgcgcattgcgcccattcaggtagttggccgcatcaaagtaagccgacgataaattgtcctttagccgttttcccatcgctcgttctcctttgaccta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taggtcaaaggagaacgagcgatgggaaaacggctaaaggacaatttatcgtcggcttactttgatgcggccaactacctgaatgggcgcaatgcgcgaaagcggatagtggcgtatgtggagtcgtacgacgatatattcttttggcgcacggcacttagcagtttcgagaacaagcaccgttattttgaagtaatgctgccttcgcgccacacactgacgaagggaaaacgctcggtgctgatgaatttgatttcggaaaatgttggcgaaagtatgatagcctgtgtagatgccgactacgactatctcctgcaaggttccacgtcgatgtcgcgcgccgtaaaccatagtccttacgtgtttcacacctatgcatacgccatcgaaaacctgcaatgctatgccgccagcctgcacgatgtaagcgttgctgttacgctgaacgaccgtgccatcttcgattttgaagagtatctgcgtctttacagcgaggctatttttccgttgttcgtgtggagcgtatggttttacaggaaaggaatttacggaaagttcaccattaccgatttcaaccatatcatagaaatgggcaacttcagctttcagacggcttatgcgaacatagagaagttgcgccgaaaggtggcaaggaagatacggcagttccagcacgaatatcccgatgccaaggctacctacttggctgtgaaagaggatataaagcgattgggagtaacggcacaaaccacttatttgtatatacaggggcatcatttgttcgacaatgtggtggtgcccgctctgaaaagggtgtgcgacaagcttatacgcgaccatgaacaggagatttatcgcaatgcgcgacacattgtgcaacagagaaacgaactttcaaactacaatcacagcatagaagaaattgtaccaatgctgcgacgcaacgtgggctataccaacagtgaaccttatttgcgtttgaaagccgatttaagagatttcttagacggaaactgcgaggagtaagctgttatttccgttttccacatctacttctttaatttttctgataaatatggtatcatattcggacagttatgatgccatatttggacaattatgttgccatattcagacaagcatgacgccatgttcggataagcatgatgtcatattcagacaagtatgacgccatattcagacaagcatgacgtcatgttcagataagcatgacgtcatattcgagcaaatatgacgtcatattctggcaaatatgacgtcatatttttcacgcactgctaagtcgttgaaatagagtagataagaagtgtctttccagtacaggttttttctcta Mask Tandem Repeat Region ================================================ tagagaaaaaacctgtactggaaagacacttcttatctactctatttcaacgacttagcagtgcgtgaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaccatatttatcagaaaaattaaagaagtagatgtggaaaacggaaataacagcttactcctcgcagtttccgtctaagaaatctcttaaatcggctttcaaacgcaaataaggttcactgttggtatagcccacgttgcgtcgcagcattggtacaatttcttctatgctgtgattgtagtttgaaagttcgtttctctgttgcacaatgtgtcgcgcattgcgataaatctcctgttcatggtcgcgtataagcttgtcgcacacccttttcagagcgggcaccaccacattgtcgaacaaatgatgcccctgtatatacaaataagtggtttgtgccgttactcccaatcgctttatatcctctttcacagccaagtaggtagccttggcatcgggatattcgtgctggaactgccgtatcttccttgccacctttcggcgcaacttctctatgttcgcataagccgtctgaaagctgaagttgcccatttctatgatatggttgaaatcggtaatggtgaactttccgtaaattcctttcctgtaaaaccatacgctccacacgaacaacggaaaaatagcctcgctgtaaagacgcagatactcttcaaaatcgaagatggcacggtcgttcagcgtaacagcaacgcttacatcgtgcaggctggcggcatagcattgcaggttttcgatggcgtatgcataggtgtgaaacacgtaaggactatggtttacggcgcgcgacatcgacgtggaaccttgcaggagatagtcgtagtcggcatctacacaggctatcatactttcgccaacattttccgaaatcaaattcatcagcaccgagcgttttcccttcgtcagtgtgtggcgcgaaggcagcattacttcaaaataacggtgcttgttctcgaaactgctaagtgccgtgcgccaaaagaatatatcgtcgtacgactccacatacgccactatccgctttcgcgcattgcgcccattcaggtagttggccgcatcaaagtaagccgacgataaattgtcctttagccgttttcccatcgctcgttctcctttgaccta Find is-nt database================================================ Query_seq: PI2006:PI2008|PI2006:PI2008:potassium uptake system protein: ABC transporter, ATP-binding protein:->->:1965907..1967262 1356 tagagaaaaaacctgtactggaaagacacttcttatctactctatttcaacgacttagcagtgcgtgaaaaatatgacgtcatatttgccagaatatgacgtcatatttgctcgaatatgacgtcatgcttatctgaacatgacgtcatgcttgtctgaatatggcgtcatacttgtctgaatatgacatcatgcttatccgaacatggcgtcatgcttgtctgaatatggcaacataattgtccaaatatggcatcataactgtccgaatatgataccatatttatcagaaaaattaaagaagtagatgtggaaaacggaaataacagcttactcctcgcagtttccgtctaagaaatctcttaaatcggctttcaaacgcaaataaggttcactgttggtatagcccacgttgcgtcgcagcattggtacaatttcttctatgctgtgattgtagtttgaaagttcgtttctctgttgcacaatgtgtcgcgcattgcgataaatctcctgttcatggtcgcgtataagcttgtcgcacacccttttcagagcgggcaccaccacattgtcgaacaaatgatgcccctgtatatacaaataagtggtttgtgccgttactcccaatcgctttatatcctctttcacagccaagtaggtagccttggcatcgggatattcgtgctggaactgccgtatcttccttgccacctttcggcgcaacttctctatgttcgcataagccgtctgaaagctgaagttgcccatttctatgatatggttgaaatcggtaatggtgaactttccgtaaattcctttcctgtaaaaccatacgctccacacgaacaacggaaaaatagcctcgctgtaaagacgcagatactcttcaaaatcgaagatggcacggtcgttcagcgtaacagcaacgcttacatcgtgcaggctggcggcatagcattgcaggttttcgatggcgtatgcataggtgtgaaacacgtaaggactatggtttacggcgcgcgacatcgacgtggaaccttgcaggagatagtcgtagtcggcatctacacaggctatcatactttcgccaacattttccgaaatcaaattcatcagcaccgagcgttttcccttcgtcagtgtgtggcgcgaaggcagcattacttcaaaataacggtgcttgttctcgaaactgctaagtgccgtgcgccaaaagaatatatcgtcgtacgactccacatacgccactatccgctttcgcgcattgcgcccattcaggtagttggccgcatcaaagtaagccgacgataaattgtcctttagccgttttcccatcgctcgttctcctttgaccta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI2006:PI2008|PI2006:PI2008:potassium uptake system protein: ABC transporter, ATP-binding protein:->->:1965907..1967262 1356 tagagaaaaaacctgtactggaaagacacttcttatctactctatttcaacgacttagcagtgcgtgaaaaatatgacgtcatatttgccagaatatgacgtcatatttgctcgaatatgacgtcatgcttatctgaacatgacgtcatgcttgtctgaatatggcgtcatacttgtctgaatatgacatcatgcttatccgaacatggcgtcatgcttgtctgaatatggcaacataattgtccaaatatggcatcataactgtccgaatatgataccatatttatcagaaaaattaaagaagtagatgtggaaaacggaaataacagcttactcctcgcagtttccgtctaagaaatctcttaaatcggctttcaaacgcaaataaggttcactgttggtatagcccacgttgcgtcgcagcattggtacaatttcttctatgctgtgattgtagtttgaaagttcgtttctctgttgcacaatgtgtcgcgcattgcgataaatctcctgttcatggtcgcgtataagcttgtcgcacacccttttcagagcgggcaccaccacattgtcgaacaaatgatgcccctgtatatacaaataagtggtttgtgccgttactcccaatcgctttatatcctctttcacagccaagtaggtagccttggcatcgggatattcgtgctggaactgccgtatcttccttgccacctttcggcgcaacttctctatgttcgcataagccgtctgaaagctgaagttgcccatttctatgatatggttgaaatcggtaatggtgaactttccgtaaattcctttcctgtaaaaccatacgctccacacgaacaacggaaaaatagcctcgctgtaaagacgcagatactcttcaaaatcgaagatggcacggtcgttcagcgtaacagcaacgcttacatcgtgcaggctggcggcatagcattgcaggttttcgatggcgtatgcataggtgtgaaacacgtaaggactatggtttacggcgcgcgacatcgacgtggaaccttgcaggagatagtcgtagtcggcatctacacaggctatcatactttcgccaacattttccgaaatcaaattcatcagcaccgagcgttttcccttcgtcagtgtgtggcgcgaaggcagcattacttcaaaataacggtgcttgttctcgaaactgctaagtgccgtgcgccaaaagaatatatcgtcgtacgactccacatacgccactatccgctttcgcgcattgcgcccattcaggtagttggccgcatcaaagtaagccgacgataaattgtcctttagccgttttcccatcgctcgttctcctttgaccta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI2006:PI2008|PI2006:PI2008:potassium uptake system protein: ABC transporter, ATP-binding protein:->->:1965907..1967262 1356 tagagaaaaaacctgtactggaaagacacttcttatctactctatttcaacgacttagcagtgcgtgaaaaatatgacgtcatatttgccagaatatgacgtcatatttgctcgaatatgacgtcatgcttatctgaacatgacgtcatgcttgtctgaatatggcgtcatacttgtctgaatatgacatcatgcttatccgaacatggcgtcatgcttgtctgaatatggcaacataattgtccaaatatggcatcataactgtccgaatatgataccatatttatcagaaaaattaaagaagtagatgtggaaaacggaaataacagcttactcctcgcagtttccgtctaagaaatctcttaaatcggctttcaaacgcaaataaggttcactgttggtatagcccacgttgcgtcgcagcattggtacaatttcttctatgctgtgattgtagtttgaaagttcgtttctctgttgcacaatgtgtcgcgcattgcgataaatctcctgttcatggtcgcgtataagcttgtcgcacacccttttcagagcgggcaccaccacattgtcgaacaaatgatgcccctgtatatacaaataagtggtttgtgccgttactcccaatcgctttatatcctctttcacagccaagtaggtagccttggcatcgggatattcgtgctggaactgccgtatcttccttgccacctttcggcgcaacttctctatgttcgcataagccgtctgaaagctgaagttgcccatttctatgatatggttgaaatcggtaatggtgaactttccgtaaattcctttcctgtaaaaccatacgctccacacgaacaacggaaaaatagcctcgctgtaaagacgcagatactcttcaaaatcgaagatggcacggtcgttcagcgtaacagcaacgcttacatcgtgcaggctggcggcatagcattgcaggttttcgatggcgtatgcataggtgtgaaacacgtaaggactatggtttacggcgcgcgacatcgacgtggaaccttgcaggagatagtcgtagtcggcatctacacaggctatcatactttcgccaacattttccgaaatcaaattcatcagcaccgagcgttttcccttcgtcagtgtgtggcgcgaaggcagcattacttcaaaataacggtgcttgttctcgaaactgctaagtgccgtgcgccaaaagaatatatcgtcgtacgactccacatacgccactatccgctttcgcgcattgcgcccattcaggtagttggccgcatcaaagtaagccgacgataaattgtcctttagccgttttcccatcgctcgttctcctttgaccta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 4 Min: 346 Max: 1335 Len: 990 Subject: UniRef90_Q64Y83 Cluster: Putative ABC transporter ATP-binding protein; n=1; Bacteroides fragilis|Rep: Putative ABC transporter ATP-binding protein - Bacteroides fragilis HSP 1 e-value: 4.0E-86 bit: 321.0 Len: 990 Query Start:346 Query End:1335 Subject Strand: null Subject Start: 1 Subject End: 331 ......................................................................................................................................................................................................................................................................................................................................................... M G K R L K D N L S S A Y F D A A N Y L N G R N A R K R I V A Y V E S Y D D I F F W R T A L S S F E N K H R Y F E V M L P S R H T L T K G K R S V L M N L I S E - N V G E S M I A C V D A D Y D Y L L Q G S T S M S R A V N H S P Y V F H T Y A Y A I E N L Q C Y A A S L H D V S V A V T L N D R A I F D F E E Y L R L Y S E A I F P L F V W S V W F Y R K G I Y G K F T I T D F N H I I E M G N F S F Q T A Y A N I E K L R R K V A R K I R Q F Q H E Y P D A K A T Y L A V K E D I K R L G V T A Q T T Y L Y I Q G H H L F D N V V V P A L K R V C D K L I R D H E Q E I Y R N A R H I V Q Q R N E L S N Y N H S I E E I V P M L R R N V G Y T N S E P Y L R L K A D L R D F L D G ..................... ......................................................................................................................................................................................................................................................................................................................................................... M A I S L K D N L T S S Y F N A A H K L Y S K K A R R R I V A Y V E S Y D D V A F W R T L L E E F E D E E H Y F Q V M L P S A T S L A K G K K M V L M N T L N T A E L G K S L I A C V D S D Y D F L L Q G A T A T S R K I N R N R Y I F Q T Y A Y A I E N Y H C Y A D S L H E V C V Q A T L N D R H L I D F N E F M K R Y S Q I A Y P L F L W S V W F Y R R H D T Y T F T M S E F N A C V R L H D V S L R H P E R S L E A V R R S V T S K L S E L S T R F P Q G I E E V D K L S V E L K G L G V L P D T T Y L F I Q G H H I M D N V V M K V L T P V C T A L R R E R E Q E I K K L A E H D E Q F H N E L T C Y Q N S Q V N V E V M L R K N S A Y K D L Y L Y Q W L K E D I K E F L Y G ..................... Subject: UniRef90_Q8A0G9 Cluster: Putative ABC transporter ATP-binding protein; n=2; Bacteroides|Rep: Putative ABC transporter ATP-binding protein - Bacteroides thetaiotaomicron HSP 1 e-value: 1.0E-83 bit: 313.0 Len: 984 Query Start:352 Query End:1335 Subject Strand: null Subject Start: 297 Subject End: 625 ............................................................................................................................................................................................................................................................................................................................................................... M G K R L K D N L S S A Y F D A A N Y L N G R N A R K R I V A Y V E S Y D D I F F W R T A L S S F E N K H R Y F E V M L P S R H T L T K G K R S V L M N L I S E - N V G E S M I A C V D A D Y D Y L L Q G S T S M S R A V N H S P Y V F H T Y A Y A I E N L Q C Y A A S L H D V S V A V T L N D R A I F D F E E Y L R L Y S E A I F P L F V W S V W F Y R K G I Y G K F T I T D F N H I I E M G N F S F Q T A Y A N I E K L R R K V A R K I R Q F Q H E Y P D A K A T Y L A V K E D I K R L G V T A Q T T Y L Y I Q G H H L F D N V V V P A L K R V C D K L I R D H E Q E I Y R N A R H I V Q Q R N E L S N Y N H S I E E I V P M L R R N V G Y T N S E P Y L R L K A D L R D F L ..................... ............................................................................................................................................................................................................................................................................................................................................................... M A T S L R D N L T S S Y F N A A H K L Y S K K A R R R I I A Y V E S Y D D V A F W R T L L E E F E D D E H Y F Q V M L P S A T S L A K G K K M V L M N T L N T A E L G R S L I A C V D S D Y D F L L Q G A T N T S R K I N R N K Y I F Q T Y T Y A I E N Y H C F A E S L H E V C V Q A T L N D R F I L D F N A Y L K R Y S E I V Y P L F L W N V W F Y R Q R D T Y T F P M Y D F H T Y T A L R E I S L K H P E H S L E A L Q H R V N Q K L A E L K K R F P G S V N Q V N G L R S E L K E L G L V P E T T Y L Y M Q G H H V M D N V V M K L L I P V C T A L R R E R E Q E I K R L A E H N E Q F R N E L T C Y Q N S Q V N V E I M L K K N V A Y K R L F H Y D W L R Q D I Q E Y L ..................... Subject: UniRef90_Q6GUF6 Cluster: Hypothetical protein orfX; n=1; Escherichia coli|Rep: Hypothetical protein orfX - Escherichia coli HSP 1 e-value: 2.0E-10 bit: 69.7 Len: 951 Query Start:367 Query End:1317 Subject Strand: null Subject Start: 218 Subject End: 527 .............................................................................................................................................................................................................................................................................................................................................................................. D N L S S A Y F D A A N Y L N G R N A R K R I V A Y V E S Y D D I F F W R T A L S S F E N K H R Y F E V M L P S R H T L T K G K R S V L M N L I S E N V G E S M I A C V D A D Y D Y L L Q G S T S M S R A V N H S P Y V F H T Y A Y A I E N L Q C Y A A S L H D V S V A V T L N D R A I F D F E E Y L R L Y S E A I F P L F V W S V W F Y R K G I Y G K F T I T D F N H I I E M G N F S - - F Q T A Y A N I E K L R R K V A R K I R Q F Q H E - - - Y P D A K A T - Y L A V K E D I K R L G V T A Q T T Y L Y I Q G H H L F D N V V V P A L K R V C D K L I R D H E Q E I Y R N A R H I V Q Q R N E L S N Y N H S I E E I V P M L R R N V G Y T N S E P Y L R L K A D ....................................... .............................................................................................................................................................................................................................................................................................................................................................................. D N N F T S Y F T N P K Y V T N Y N F N G K G L I Y I E N E R D Y V F W E S I F N A H F D G - - M Y E I K A S I K N D G R R G K - D A L L E L I P - T L N K N C L L A I D G D F D Y I S E C D Y R F G K F M S N A - Y V L H T H S Y S R E S A V F S K S K I D E V V S K L R L T L P C T F D V N K P N Q I I S K R Y F K A L V G F L Y L M K K N R D L A I N I - D I H K P I K K C E F R K Y I N N D F T S N D K I I Q E M T S L L E P I E N E I Y S Y I D E R S I E F S S F V E Q A N R K G L K E D S A Y R F I S G H V L N D N I L L P M L A R I - - K F L M E R Q - - - - - S L R S I A S E D T S R E N K S N M I S A I K N H Y R D N C K V K T I I T H L N L C A N ....................................... Subject: UniRef90_Q1Q7S8 Cluster: Hypothetical protein; n=1; Psychrobacter cryohalolentis K5|Rep: Hypothetical protein - Psychrobacter cryohalolentis (strain K5) HSP 1 e-value: 1.0E-7 bit: 60.5 Len: 729 Query Start:571 Query End:1299 Subject Strand: null Subject Start: 7 Subject End: 254 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Y F D A A N Y L N G R N A - - - - - - - - R K R I V A Y V E S Y D D I F F W R T A L S S F E N K H R Y F E V M L P S R H T L T K G K R S V L M N L I S E N V G E S M I A C V D A D Y D Y L L Q G S T S M S R A V N H S P Y V F H T Y A Y A I E N L Q C Y A A S L H D V S V A V T L N D R A I F D F E E Y L R L Y S E A I F P L F V W S V W F Y R K G I Y G K F T I T D F N - - - H I I E - - M G N F S F Q T A Y A N I E K L R R K V A R K I R Q F Q H E Y P D A K A T Y - - - - L A V K E D I K R L G V T A Q T T Y L Y I Q G H H L F D ......................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... F F T S K N F I G A Y N V F S S G D I K D K N K G I I Y V E D A S D Y S F W E G F I G - Y H Y P N E Y M C R P S S K E G K T V T G K R - - F L E K I Y K D A N E K I I I A V D S D Y D Y I A S - K V Q E D H I F N H N K Y V I H T H G F S R E S V Q I E K D S L D H F F K L C R L T I P N T V N L S S F L N D F S E I A F K G L A K Y I V I L N R I D Y S N I Y D S E F N S C F H L L D E N M V D E N L L I S K S G I E K I E K K M - - - - - - - - D L F F D D K C I Y E D D I I K S E Y F L N D I G I N R D N A Y R F I S G H V L F D ......................................................... tagagaaaaaacctgtactggaaagacacttcttatctactctatttcaacgacttagcagtgcgtgaaaaatatgacgtcatatttgccagaatatgacgtcatatttgctcgaatatgacgtcatgcttatctgaacatgacgtcatgcttgtctgaatatggcgtcatacttgtctgaatatgacatcatgcttatccgaacatggcgtcatgcttgtctgaatatggcaacataattgtccaaatatggcatcataactgtccgaatatgataccatatttatcagaaaaattaaagaagtagatgtggaaaacggaaataacagcttactcctcgcagttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgctcgttctcctttgaccta Predict ORF larger than 30AA ================================================ Protein_Len: 33 Strand: + Start: 206 End: 304 ............................................................................................................................................................................................................. M A S C L S E Y G N I I V Q I W H H N C P N M I P Y L S E K L K K ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 30 Strand: + Start: 262 End: 351 ..................................................................................................................................................................................................................................................................... M S E Y D T I F I R K I K E V D V E N G N N S L L L A V S V ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 31 Strand: + Start: 367 End: 459 .............................................................................................................................................................................................................................................................................................................................................................................. M G F Q T Q I R F T V G I A H V A S Q H W Y N F F Y A V I V V ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 34 Strand: + Start: 426 End: 527 ......................................................................................................................................................................................................................................................................................................................................................................................................................................... M V Q F L L C C D C S L K V R F S V A Q C V A H C D K S P V H G R V ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 32 Strand: + Start: 1076 End: 1171 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M I L S P T F S E I K F I S T E R F P F V S V W R E G S I T S K ......................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 957 End: 1196 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M A G F R W R M H R C E T R K D Y G L R R A T S T W N L A G D S R S R H L H R L S Y F R Q H F P K S N S S A P S V F P S ................................................................................................................................................................ Protein_Len: 33 Strand: + Start: 1181 End: 1279 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M F S K L L S A V R Q K N I S S Y D S T Y A T I R F R A L R P F R ............................................................................. Protein_Len: 60 Strand: + Start: 475 End: 1308 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M L H N V S R I A I N L L F M V A Y K L V A H P F Q S G H H H I V E Q M M P L Y I Q I S G L C R Y S Q S L Y I L F H S Q ................................................ Protein_Len: 50 Strand: + Start: 1200 End: 1349 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M P C A K R I Y R R T T P H T P L S A F A H C A H S G S W P H Q S K P T I N C P L A V F P S L V L L ....... Protein_Len: 30 Strand: - Start: 890 End: 979 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... F R L H C P R E A Y C C R K C R A P Q R C L M A P K R H R M ......................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 44 Strand: - Start: 774 End: 905 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... S I T S I P L P S S E T F E K G T F G Y A G C S C R F F L R A T F V C I S K L I S S P M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 518 End: 841 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... G Q C R S I R A P V A T D E K G G K P A V E R H E C L G D S L Q L Q G N R H Y P Q F R Y H H V K R L N R E Q L V M R E M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 334 End: 1335 ............................................................................................................................................................................................................................................................................................................................................. L M V E F Y R H K N E F S S L A T R W F F I D D Y S E V Y A V I R K R A N R G N L Y N A A D F Y A S S L N D K L R K G M ..................... Protein_Len: 53 Strand: - Start: 171 End: 329 .......................................................................................................................................................................... V Q R F I V D H K D S C P T M S T Q I H C C L Q G F I A D Y S D S Y S V M N I L F I L S T S T S F P F L M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tagagaaaaaacctgtactggaaagacacttcttatctactctatttcaacgacttagcagtgcgtgaaaaatatgacgtcatatttgccagaatatgacgtcatatttgctcgaatatgacgtcatgcttatctgaacatgacgtcatgcttgtctgaatatggcgtcatacttgtctgaatatgacatcatgcttatccgaacatggcgtcatgcttgtctgaatatggcaacataattgtccaaatatggcatcataactgtccgaatatgataccatatttatcagaaaaattaaagaagtagatgtggaaaacggaaataacagcttactcctcgcagttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgctcgttctcctttgaccta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 272 End: 301 ...............................................................................................................................................................................................................................................................................CTTTAATTTTTCTGATAAATATGGTATCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 773 End: 802 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACCATTACCGATTTCAACCATATCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tagagaaaaaacctgtactggaaagacacttcttatctactctatttcaacgacttagcagtgcgtgaaaaatatgacgtcatatttgccagaatatgacgtcatatttgctcgaatatgacgtcatgcttatctgaacatgacgtcatgcttgtctgaatatggcgtcatacttgtctgaatatgacatcatgcttatccgaacatggcgtcatgcttgtctgaatatggcaacataattgtccaaatatggcatcataactgtccgaatatgataccatatttatcagaaaaattaaagaagtagatgtggaaaacggaaataacagcttactcctcgcagttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgctcgttctcctttgaccta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 100 HP_score: -14.2 Tail_Score: -4.57569 Start: 73 End: 106 Full_Region: tcatattcgagcaaa tatgacgtcatatt ctggca aatatgacgtcata tttttcacgcactgc ........................................................................tatgacgtcatattctggcaaatatgacgtcata.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 100 HP_score: -14.9 Tail_Score: -3.75665 Start: 73 End: 106 Full_Region: GCAGTGCGTGAAAAA TATGACGTCATATTT GCCA GAATATGACGTCATA TTTGCTCGAATATGA ........................................................................TATGACGTCATATTTGCCAGAATATGACGTCATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 73 HP_score: -9.2 Tail_Score: -3.49475 Start: 94 End: 129 Full_Region: GTCATATTTGCCAGA ATATGACGTCATATTT GCTC GAATATGACGTCATGC TTATCTGAACATGAC .............................................................................................ATATGACGTCATATTTGCTCGAATATGACGTCATGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 74 HP_score: -9.8 Tail_Score: -3.30771 Start: 95 End: 128 Full_Region: tcatgttcagataag catgacgtcatatt cgagca aatatgacgtcata ttctggcaaatatga ..............................................................................................catgacgtcatattcgagcaaatatgacgtcata............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 86 HP_score: -12.4 Tail_Score: -3.22102 Start: 97 End: 126 Full_Region: atgttcagataagca tgacgtcatatt cgagca aatatgacgtca tattctggcaaatat ................................................................................................tgacgtcatattcgagcaaatatgacgtca.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 86 HP_score: -13.1 Tail_Score: -2.89 Start: 97 End: 126 Full_Region: ATATTTGCCAGAATA TGACGTCATATTT GCTC GAATATGACGTCA TGCTTATCTGAACAT ................................................................................................TGACGTCATATTTGCTCGAATATGACGTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 72 HP_score: -10.1 Tail_Score: -2.90061 Start: 119 End: 148 Full_Region: ATATTTGCTCGAATA TGACGTCATGCTT ATCT GAACATGACGTCA TGCTTGTCTGAATAT ......................................................................................................................TGACGTCATGCTTATCTGAACATGACGTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 79 HP_score: -11.6 Tail_Score: -3.02263 Start: 119 End: 148 Full_Region: atattcagacaagca tgacgtcatgtt cagata agcatgacgtca tattcgagcaaatat ......................................................................................................................tgacgtcatgttcagataagcatgacgtca........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 42 HP_score: -2.2 Tail_Score: -3.01791 Start: 163 End: 192 Full_Region: atgttcggataagca tgatgtcatatt cagaca agtatgacgcca tattcagacaagcat ..................................................................................................................................................................tgatgtcatattcagacaagtatgacgcca............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 45 HP_score: -3.6 Tail_Score: -3.02263 Start: 185 End: 214 Full_Region: atattcagacaagca tgacgccatgtt cggata agcatgatgtca tattcagacaagtat ........................................................................................................................................................................................tgacgccatgttcggataagcatgatgtca...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 57 HP_score: -4.8 Tail_Score: -3.58801 Start: 249 End: 282 Full_Region: aatttttctgataaa tatggtatcata ttcggacagt tatgatgccata tttggacaattatgt ........................................................................................................................................................................................................................................................tatggtatcatattcggacagttatgatgccata.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Find igs database================================================ Query_seq: PI2006:PI2008|PI2006:PI2008:potassium uptake system protein: ABC transporter, ATP-binding protein:->->:1965907..1967262 1356 tagagaaaaaacctgtactggaaagacacttcttatctactctatttcaacgacttagcagtgcgtgaaaaatatgacgtcatatttgccagaatatgacgtcatatttgctcgaatatgacgtcatgcttatctgaacatgacgtcatgcttgtctgaatatggcgtcatacttgtctgaatatgacatcatgcttatccgaacatggcgtcatgcttgtctgaatatggcaacataattgtccaaatatggcatcataactgtccgaatatgataccatatttatcagaaaaattaaagaagtagatgtggaaaacggaaataacagcttactcctcgcagttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgctcgttctcctttgaccta Intra-Species Hit: Count: 1 Min: 1 Max: 345 Len: 345 Subject: pint_PI2006_PI2008|potassium uptake system protein: ABC transporter, ATP-binding protein|POSITIVE:POSITIVE|[1965907,1967262]|1356 HSP 1 e-value: 0.0 bit: 684.0 Len: 345 Query Start:1 Query End:345 Subject Strand: POSITIVE Subject Start: 1 Subject End: 345 tagagaaaaaacctgtactggaaagacacttcttatctactctatttcaacgacttagcagtgcgtgaaaaatatgacgtcatatttgccagaatatgacgtcatatttgctcgaatatgacgtcatgcttatctgaacatgacgtcatgcttgtctgaatatggcgtcatacttgtctgaatatgacatcatgcttatccgaacatggcgtcatgcttgtctgaatatggcaacataattgtccaaatatggcatcataactgtccgaatatgataccatatttatcagaaaaattaaagaagtagatgtggaaaacggaaataacagcttactcctcgcagtt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... tagagaaaaaacctgtactggaaagacacttcttatctactctatttcaacgacttagcagtgcgtgaaaaatatgacgtcatatttgccagaatatgacgtcatatttgctcgaatatgacgtcatgcttatctgaacatgacgtcatgcttgtctgaatatggcgtcatacttgtctgaatatgacatcatgcttatccgaacatggcgtcatgcttgtctgaatatggcaacataattgtccaaatatggcatcataactgtccgaatatgataccatatttatcagaaaaattaaagaagtagatgtggaaaacggaaataacagcttactcctcgcagtt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGAGAAAAAACCUGUACUGGAAAGACACUUCUUAUCUACUCUAUUUCAACGACUUAGCAGUGCGUGAAAAAUAUGACGUCAUAUUUGCCAGAAUAUGACGUCAUAUUUGCUCGAAUAUGACGUCAUGCUUAUCUGAACAUGACGUCAUGCUUGUCUGAAUAUGGCGUCAUACUUGUCUGAAUAUGACAUCAUGCUUAUCCGAACAUGGCGUCAUGCUUGUCUGAAUAUGGCAACAUAAUUGUCCAAAUAUGGCAUCAUAACUGUCCGAAUAUGAUACCAUAUUUAUCAGAAAAAUUAAAGAAGUAGAUGUGGAAAACGGAAAUAACAGCUUACUCCUCGCAGUU ..(((.......((((.((....))....((((..(((((((((((((...(((..(((......(((.((((((((((((((((((....))))))))))))))))))..)))...(((((((((((.((....)).)))))))))))))).)))....(((((((((((..(((..(((.((((....)))).)))..)))..)))))))))))....(((((.((((....)))).......((((((((.((((((..........)))))).)))))))).))))).........)))))))).)))))....))))...)))).......)))...... (-107.64) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AACUGCGAGGAGUAAGCUGUUAUUUCCGUUUUCCACAUCUACUUCUUUAAUUUUUCUGAUAAAUAUGGUAUCAUAUUCGGACAGUUAUGAUGCCAUAUUUGGACAAUUAUGUUGCCAUAUUCAGACAAGCAUGACGCCAUGUUCGGAUAAGCAUGAUGUCAUAUUCAGACAAGUAUGACGCCAUAUUCAGACAAGCAUGACGUCAUGUUCAGAUAAGCAUGACGUCAUAUUCGAGCAAAUAUGACGUCAUAUUCUGGCAAAUAUGACGUCAUAUUUUUCACGCACUGCUAAGUCGUUGAAAUAGAGUAGAUAAGAAGUGUCUUUCCAGUACAGGUUUUUUCUCUA ......((((((.((.((((.........((((...((((((((.((((((...(((((.(((((((((((((((..........)))))))))))))))((.((((...))))))....)))))..((((((.((...((((((((((...(((.(((((((((......))))))))).))).............((((((((((((......))))))))))))))))))))))((((((((((((((((......)))))))))))))))).....)))).)))).....))))))...))))))))..))))............)))).)).)))))).. (-107.40) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 680 120 71 178 129 pint:PI0163|5end_conserved_hypothetical_protein_157116..157346_POSITIVE 545 120 71 153 104 pint:PI0063|5end_transcriptional_regulator,_GntR_family_63181..63411_POSITIVE 506 110 70 230 190 pint:PI0108|5end_L-lactate_permease_104892..105122_POSITIVE 378 110 70 184 144 pint:PI0001|5end_possible_Ton-B_receptor_400..630_POSITIVE 355 235 194 231 190 pint:PI0010|5end_conserved_hypothetical_protein_10628..10858_POSITIVE 304 236 193 230 174 pint:PI1072|5end_hypothetical_protein_990220..990450_POSITIVE 303 90 48 184 137 pint:PI1460|5end_ribonucleotide_reductase,_alpha_subunit,_N-terminal_region_1382215..1382445_POSITIVE 297 231 195 229 191 pint:PI0532|5end_ABC_transporter,_ATP-binding/permease_protein_486263..486493_POSITIVE 292 79 32 75 30 pint:PI1884|5end_conserved_hypothetical_protein_1826883..1827113_POSITIVE 291 234 194 206 170 pint:PI0792|5end_conserved_hypothetical_protein_729068..729298_POSITIVE 291 234 194 91 55 pint:PI0790|5end_hypothetical_protein_728953..729183_POSITIVE 289 235 191 130 93 pint:PI1784|5end_possible_dTDP-glucose_4,6-dehydratase,_NAD-dependent_epimerase/dehydratase_family_1716201..1716431_POSITIVE 287 129 81 55 7 pint:PI1043|5end_conserved_hypothetical_protein_960855..961085_POSITIVE 285 188 141 78 36 pint:PI0215|5end_hypothetical_protein_208823..209053_POSITIVE 282 168 121 91 30 pint:PI0971|5end_glycine_cleavage_system_T_protein_(aminomethyltransferase)_897847..898077_POSITIVE 281 232 193 142 99 pint:PI2133|5end_collagenase_2081106..2081336_POSITIVE 281 170 121 84 27 pint:PI1687|5end_ribosome_recycling_factor_1602307..1602537_POSITIVE 278 178 136 182 138 pint:PI0601|5end_hypothetical_protein_548758..548988_POSITIVE 277 169 121 82 18 pint:PI0431|5end_Xaa-Pro_aminopeptidase_403064..403294_POSITIVE 276 196 152 161 120 pint:PI2086|5end_signal_peptidase_I_2041835..2042065_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 313 236 195 131 87 pint:PI0531|3end_ABC_transporter,_ATP-binding_protein;_possible_gliding_motility_related_486239..486389_POSITIVE 312 64 21 72 29 pint:PI0042|3end_hypothetical_protein_43444..43594_POSITIVE 290 225 182 116 78 pint:PI1818|3end_hypothetical_protein_1757270..1757420_POSITIVE 289 127 98 34 5 pint:PI0162|3end_ADP-ribosylglycohydrolase_(ADP-ribosyl-[dinitrogen_reductase]_hydrolase)_157001..157151_POSITIVE 281 232 193 95 52 pint:PI2132|3end_hypothetical_protein_2081139..2081289_POSITIVE 278 178 136 141 97 pint:PI0600|3end_bifunctional_purine_biosynthesis_protein,_5-aminoimidazole-4-carboxamide_ribonucleotide(AICAR)_transformylase/IMP_cyclohydrolase_548797..548947_POSITIVE 276 196 152 49 8 pint:PI2085|3end_conserved_hypothetical_protein_2041803..2041953_POSITIVE 276 238 194 61 7 pint:PI1651|3end_hypothetical_protein_1564512..1564662_POSITIVE 272 260 214 86 29 pint:PI2033|3end_hypothetical_protein_1987666..1987816_POSITIVE 270 169 130 125 96 pint:PI2134|3end_hypothetical_protein_2082810..2082960_POSITIVE 264 234 192 71 20 pint:PI0225|3end_conserved_hypothetical_protein_222759..222909_POSITIVE 262 233 197 148 117 pint:PI0607|3end_2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxy_lic_acid_synthase/2-oxoglutarate_decarboxylase_555548..555698_POSITIVE 261 338 300 132 81 pint:PI1043|3end_conserved_hypothetical_protein_961597..961747_POSITIVE 259 89 42 107 56 pint:PI0595|3end_conserved_hypothetical_protein_546406..546556_POSITIVE 258 232 192 142 101 pint:PI2041|3end_conserved_hypothetical_protein_1994660..1994810_POSITIVE 255 158 113 53 7 pint:PI1635|3end_hypothetical_protein_1554306..1554456_POSITIVE 254 236 200 137 104 pint:PI0392|3end_possible_transcriptional_regulator_358735..358885_POSITIVE 253 237 191 128 79 pint:PI0180|3end_TonB_protein_173430..173580_POSITIVE 252 231 193 149 100 pint:PI1071|3end_DNA_topoisomerase_III_990226..990376_POSITIVE 251 233 208 36 12 pint:PI0430|3end_periplasmic_protease;_MdsD_protein_403101..403251_POSITIVE