Origin IGS: taattccaaacatgcaagaatatgccaatatttttgcatctctttaacatttttaccgaatactacacagttattcaccattgaactttatatggttcccaatttctgaaacgcttaaaaagtcaatcaagatgtttatttagttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagagtatagatgttcttatgaagaatatttacatatctacaaacttcttctcgcctcaaaatggactatgaagagccgcta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tagcggctcttcatagtccattttgaggcgagaagaagtttgtagatatgtaaatattcttcataagaacatctatactctaaccttctcattaccaatatattataaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctgttttgaaatgcaaaacagccgctttcgcaatgtcaaaccgaaattgctgttttttatcagaattatctttacaaaactaaataaacatcttgattgactttttaagcgtttcagaaattgggaaccatataaagttcaatggtgaataactgtgtagtattcggtaaaaatgttaaagagatgcaaaaatattggcatattcttgcatgtttggaatta Mask Tandem Repeat Region ================================================ taattccaaacatgcaagaatatgccaatatttttgcatctctttaacatttttaccgaatactacacagttattcaccattgaactttatatggttcccaatttctgaaacgcttaaaaagtcaatcaagatgtttatttagttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagagtatagatgttcttatgaagaatatttacatatctacaaacttcttctcgcctcaaaatggactatgaagagccgcta Find is-nt database================================================ Query_seq: PI1981:PI1982|PI1981:PI1982:hypothetical protein:conserved hypothetical protein:->->:1938199..1938578 380 taattccaaacatgcaagaatatgccaatatttttgcatctctttaacatttttaccgaatactacacagttattcaccattgaactttatatggttcccaatttctgaaacgcttaaaaagtcaatcaagatgtttatttagttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagagtatagatgttcttatgaagaatatttacatatctacaaacttcttctcgcctcaaaatggactatgaagagccgcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1981:PI1982|PI1981:PI1982:hypothetical protein:conserved hypothetical protein:->->:1938199..1938578 380 taattccaaacatgcaagaatatgccaatatttttgcatctctttaacatttttaccgaatactacacagttattcaccattgaactttatatggttcccaatttctgaaacgcttaaaaagtcaatcaagatgtttatttagttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagagtatagatgttcttatgaagaatatttacatatctacaaacttcttctcgcctcaaaatggactatgaagagccgcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1981:PI1982|PI1981:PI1982:hypothetical protein:conserved hypothetical protein:->->:1938199..1938578 380 taattccaaacatgcaagaatatgccaatatttttgcatctctttaacatttttaccgaatactacacagttattcaccattgaactttatatggttcccaatttctgaaacgcttaaaaagtcaatcaagatgtttatttagttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagagtatagatgttcttatgaagaatatttacatatctacaaacttcttctcgcctcaaaatggactatgaagagccgcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taattccaaacatgcaagaatatgccaatatttttgcatctctttaacatttttaccgaatactacacagttattcaccattgaactttatatggttcccaatttctgaaacgcttaaaaagtcaatcaagatgtttatttagttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagagtatagatgttcttatgaagaatatttacatatctacaaacttcttctcgcctcaaaatggactatgaagagccgcta Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 106 End: 378 ......................................................................................................... M K R L K S Q S R C L F S F V K I I L I K N S N F G L T L R K R L F C I S K Q P L L P C K T Y A F G M Q N N R F Y N I L .. Protein_Len: 60 Strand: - Start: 143 End: 361 .............................................................................................................................................. N S M A F A A T K C K L V A A K V T Y F R R K Q F A F C Y T K Y Y I P L S F T L T Y I N K H L I N V Y R C V E E R R L M ................... taattccaaacatgcaagaatatgccaatatttttgcatctctttaacatttttaccgaatactacacagttattcaccattgaactttatatggttcccaatttctgaaacgcttaaaaagtcaatcaagatgtttatttagttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagagtatagatgttcttatgaagaatatttacatatctacaaacttcttctcgcctcaaaatggactatgaagagccgcta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 85 Start: 250 End: 279 .........................................................................................................................................................................................................................................................TTTGGAATGCAAAACAATAGGTTTTATAAT..................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taattccaaacatgcaagaatatgccaatatttttgcatctctttaacatttttaccgaatactacacagttattcaccattgaactttatatggttcccaatttctgaaacgcttaaaaagtcaatcaagatgtttatttagttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagagtatagatgttcttatgaagaatatttacatatctacaaacttcttctcgcctcaaaatggactatgaagagccgcta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 60 HP_score: -4.0 Tail_Score: -4.25873 Start: 173 End: 193 Full_Region: aaaacagccgctttc gcaatgtc aaacc gaaattgc tgttttttatcagaa ............................................................................................................................................................................gcaatgtcaaaccgaaattgc........................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -17.6 Tail_Score: -4.16943 Start: 198 End: 226 Full_Region: TTTGACATTGCGAAA GCGGCTGTTTTG CATTT CAAAACAGCCGC TTTTACCGTGTAAAA .....................................................................................................................................................................................................GCGGCTGTTTTGCATTTCAAAACAGCCGC.......................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -17.6 Tail_Score: -3.59262 Start: 198 End: 226 Full_Region: ttttacacggtaaaa gcggctgttttg aaatg caaaacagccgc tttcgcaatgtcaaa .....................................................................................................................................................................................................gcggctgttttgaaatgcaaaacagccgc.......................................................................................................................................................... TransTerm Strand: + Conf: 44 HP_score: -3.3 Tail_Score: -2.77416 Start: 237 End: 275 Full_Region: GCCGCTTTTACCGTG TAAAACCTACGCTTTTG GAATG CAAAACAATAGGTTTTA TAATATATTGGTAAT ............................................................................................................................................................................................................................................TAAAACCTACGCTTTTGGAATGCAAAACAATAGGTTTTA......................................................................................................... Find igs database================================================ Query_seq: PI1981:PI1982|PI1981:PI1982:hypothetical protein:conserved hypothetical protein:->->:1938199..1938578 380 taattccaaacatgcaagaatatgccaatatttttgcatctctttaacatttttaccgaatactacacagttattcaccattgaactttatatggttcccaatttctgaaacgcttaaaaagtcaatcaagatgtttatttagttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagagtatagatgttcttatgaagaatatttacatatctacaaacttcttctcgcctcaaaatggactatgaagagccgcta Intra-Species Hit: Count: 39 Min: 1 Max: 380 Len: 380 Subject: pint_PI1981_PI1982|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1938199,1938578]|380 HSP 1 e-value: 0.0 bit: 753.0 Len: 380 Query Start:1 Query End:380 Subject Strand: POSITIVE Subject Start: 1 Subject End: 380 taattccaaacatgcaagaatatgccaatatttttgcatctctttaacatttttaccgaatactacacagttattcaccattgaactttatatggttcccaatttctgaaacgcttaaaaagtcaatcaagatgtttatttagttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagagtatagatgttcttatgaagaatatttacatatctacaaacttcttctcgcctcaaaatggactatgaagagccgcta taattccaaacatgcaagaatatgccaatatttttgcatctctttaacatttttaccgaatactacacagttattcaccattgaactttatatggttcccaatttctgaaacgcttaaaaagtcaatcaagatgtttatttagttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagagtatagatgttcttatgaagaatatttacatatctacaaacttcttctcgcctcaaaatggactatgaagagccgcta Subject: pint_PI1958_PI1959|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1917430,1917847]|418 HSP 1 e-value: 1.0E-103 bit: 375.0 Len: 237 Query Start:144 Query End:380 Subject Strand: POSITIVE Subject Start: 182 Subject End: 418 ...............................................................................................................................................ttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagagtatagatgttcttatgaagaatatttacatatctacaaacttcttctcgcctcaaaatggactatgaagagccgcta ...............................................................................................................................................ttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagacggtagatgtttttataaaaaatatttacatatctgtaagcttcttctcgcctcaaaatggactgtgaagagccgcta HSP 2 e-value: 9.0E-7 bit: 56.0 Len: 36 Query Start:195 Query End:230 Subject Strand: NEGATIVE Subject Start: 232 Subject End: 267 ..................................................................................................................................................................................................aaagcggctgttttgcatttcaaaacagccgctttt...................................................................................................................................................... ..................................................................................................................................................................................................aaagcggctgttttgcaatgcaaaacagccgctttt...................................................................................................................................................... Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 4.0E-40 bit: 167.0 Len: 132 Query Start:143 Query End:274 Subject Strand: NEGATIVE Subject Start: 57 Subject End: 188 ..............................................................................................................................................gttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... ..............................................................................................................................................gttttgtaaagataattccgacgaaaaacggtaatttcgatttggcgttgcgaaagcggctgttttgcagcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... Subject: pint_PI0195_PI0196|epimerase/reductase:hypothetical protein|POSITIVE:POSITIVE|[188263,188574]|312 HSP 1 e-value: 1.0E-39 bit: 165.0 Len: 107 Query Start:174 Query End:280 Subject Strand: POSITIVE Subject Start: 175 Subject End: 281 .............................................................................................................................................................................caatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataata.................................................................................................... .............................................................................................................................................................................caatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaata.................................................................................................... Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 2.0E-35 bit: 151.0 Len: 100 Query Start:175 Query End:274 Subject Strand: NEGATIVE Subject Start: 107 Subject End: 206 ..............................................................................................................................................................................aatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... ..............................................................................................................................................................................aatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacagccgcttttgccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:195 Query End:229 Subject Strand: POSITIVE Subject Start: 152 Subject End: 186 ..................................................................................................................................................................................................aaagcggctgttttgcatttcaaaacagccgcttt....................................................................................................................................................... ..................................................................................................................................................................................................aaagcggctgttttgcgttgcaaaacagccgcttt....................................................................................................................................................... Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 8.0E-35 bit: 149.0 Len: 103 Query Start:183 Query End:285 Subject Strand: POSITIVE Subject Start: 226 Subject End: 328 ......................................................................................................................................................................................tttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattg............................................................................................... ......................................................................................................................................................................................tttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattg............................................................................................... Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 5.0E-33 bit: 143.0 Len: 100 Query Start:175 Query End:274 Subject Strand: POSITIVE Subject Start: 172 Subject End: 271 ..............................................................................................................................................................................aatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... ..............................................................................................................................................................................aatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggtttt.......................................................................................................... Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 8.0E-32 bit: 139.0 Len: 134 Query Start:141 Query End:274 Subject Strand: POSITIVE Subject Start: 141 Subject End: 274 ............................................................................................................................................tagttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... ............................................................................................................................................tagttttgtaaagataattcgttgaaaaaatgataatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 8.0E-32 bit: 139.0 Len: 106 Query Start:175 Query End:280 Subject Strand: NEGATIVE Subject Start: 227 Subject End: 332 ..............................................................................................................................................................................aatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataata.................................................................................................... ..............................................................................................................................................................................aatttcgatttggcattgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacacttttggaatgcaaaacaataggttttataata.................................................................................................... Subject: pint_PI0854_PI0855|MiaB-like tRNA modifying enzyme:hypothetical protein|POSITIVE:POSITIVE|[788060,789233]|1174 HSP 1 e-value: 5.0E-30 bit: 133.0 Len: 107 Query Start:175 Query End:281 Subject Strand: POSITIVE Subject Start: 772 Subject End: 878 ..............................................................................................................................................................................aatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatat................................................................................................... ..............................................................................................................................................................................aatttcgatttggcgttgcgaaagcgtaggttttgcaacgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttataatat................................................................................................... Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 1.0E-27 bit: 125.0 Len: 135 Query Start:145 Query End:279 Subject Strand: NEGATIVE Subject Start: 382 Subject End: 516 ................................................................................................................................................tttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataat..................................................................................................... ................................................................................................................................................tttgtaaagataattctgatgaaaaatgataatttcgatttggcattgcgaaagcggctgttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat..................................................................................................... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 1.0E-27 bit: 125.0 Len: 131 Query Start:145 Query End:275 Subject Strand: NEGATIVE Subject Start: 178 Subject End: 308 ................................................................................................................................................tttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttta......................................................................................................... ................................................................................................................................................tttgtaaagataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttta......................................................................................................... Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 133 Query Start:143 Query End:275 Subject Strand: NEGATIVE Subject Start: 178 Subject End: 310 ..............................................................................................................................................gttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttta......................................................................................................... ..............................................................................................................................................gttttgtaaagataattttattaaaaagtggcaattgcgttttgacattgcaaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcgaaacaataggtttta......................................................................................................... Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 7.0E-26 bit: 119.0 Len: 104 Query Start:175 Query End:278 Subject Strand: NEGATIVE Subject Start: 170 Subject End: 273 ..............................................................................................................................................................................aatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataa...................................................................................................... ..............................................................................................................................................................................aatttcgatttgacgttgcgaaagcgtatgttttgcgatgcaaaagagccgcttttaccgtgcaaaacctacgcttttacaatgcaaaacaataggttttataa...................................................................................................... Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 7.0E-26 bit: 119.0 Len: 132 Query Start:143 Query End:274 Subject Strand: NEGATIVE Subject Start: 41 Subject End: 172 ..............................................................................................................................................gttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... ..............................................................................................................................................gttttgtaaagataattctgatgaaaaacaataatttcgttttgacgttgcgaaagcggctcttttacaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggtttt.......................................................................................................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 3.0E-25 bit: 117.0 Len: 143 Query Start:143 Query End:285 Subject Strand: POSITIVE Subject Start: 145 Subject End: 287 ..............................................................................................................................................gttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattg............................................................................................... ..............................................................................................................................................gttttgtaaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacattg............................................................................................... Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 138 Query Start:143 Query End:280 Subject Strand: POSITIVE Subject Start: 214 Subject End: 351 ..............................................................................................................................................gttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataata.................................................................................................... ..............................................................................................................................................gttttgtaaagataatttcgctgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttacaata.................................................................................................... Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 2.0E-23 bit: 111.0 Len: 120 Query Start:175 Query End:294 Subject Strand: POSITIVE Subject Start: 186 Subject End: 305 ..............................................................................................................................................................................aatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgaga...................................................................................... ..............................................................................................................................................................................aatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgaga...................................................................................... Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 4.0E-21 bit: 103.0 Len: 104 Query Start:175 Query End:278 Subject Strand: POSITIVE Subject Start: 100 Subject End: 203 ..............................................................................................................................................................................aatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataa...................................................................................................... ..............................................................................................................................................................................aatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataa...................................................................................................... Subject: pint_PI0694_PI0695|Na+/dicarboxylate or sulfate symporter:xanthine/uracil permease family protein|POSITIVE:POSITIVE|[631238,631552]|315 HSP 1 e-value: 4.0E-21 bit: 103.0 Len: 132 Query Start:143 Query End:274 Subject Strand: POSITIVE Subject Start: 87 Subject End: 218 ..............................................................................................................................................gttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... ..............................................................................................................................................gttttgtaaagataattccgacggaaaacggtaatttcgatttgacactgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggtttt.......................................................................................................... Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 4.0E-21 bit: 103.0 Len: 100 Query Start:175 Query End:274 Subject Strand: NEGATIVE Subject Start: 88 Subject End: 187 ..............................................................................................................................................................................aatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... ..............................................................................................................................................................................aatttcgatttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.......................................................................................................... Subject: pint_PI1803_PI1804|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1737852,1738248]|397 HSP 1 e-value: 3.0E-19 bit: 97.6 Len: 133 Query Start:143 Query End:275 Subject Strand: POSITIVE Subject Start: 265 Subject End: 397 ..............................................................................................................................................gttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttta......................................................................................................... ..............................................................................................................................................gttttgtaaagattattccgaaagaaaacggtaatttcgatttggcattgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttacaatgcaaaacaataggtttta......................................................................................................... Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 132 Query Start:143 Query End:274 Subject Strand: NEGATIVE Subject Start: 98 Subject End: 229 ..............................................................................................................................................gttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... ..............................................................................................................................................gttttgtaaagataattctgttaaaaactgataactgcgttttgacattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggtttt.......................................................................................................... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 188 Query Start:145 Query End:332 Subject Strand: POSITIVE Subject Start: 60 Subject End: 247 ................................................................................................................................................tttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagagtatagatgttcttatgaagaatatttaca................................................ ................................................................................................................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttaca................................................ Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 100 Query Start:175 Query End:274 Subject Strand: POSITIVE Subject Start: 122 Subject End: 221 ..............................................................................................................................................................................aatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... ..............................................................................................................................................................................aatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggtttt.......................................................................................................... Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 132 Query Start:143 Query End:274 Subject Strand: POSITIVE Subject Start: 113 Subject End: 244 ..............................................................................................................................................gttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... ..............................................................................................................................................gttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.......................................................................................................... Subject: pint_PI2056_PI2057|conserved hypothetical protein:conserved hypothetical protein; possible metal-dependent membrane protease|POSITIVE:POSITIVE|[2014489,2015078]|590 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 137 Query Start:144 Query End:280 Subject Strand: POSITIVE Subject Start: 341 Subject End: 477 ...............................................................................................................................................ttttgtaaagataattctgataa-aaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataata.................................................................................................... ...............................................................................................................................................ttttgtaaagataattc-gttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaata.................................................................................................... Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 138 Query Start:142 Query End:279 Subject Strand: POSITIVE Subject Start: 111 Subject End: 248 .............................................................................................................................................agttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataat..................................................................................................... .............................................................................................................................................agttttgtaaagataatttctttgaaaaatggtaatttcgatttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat..................................................................................................... Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 7.0E-17 bit: 89.7 Len: 141 Query Start:139 Query End:279 Subject Strand: POSITIVE Subject Start: 106 Subject End: 246 ..........................................................................................................................................tttagttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataat..................................................................................................... ..........................................................................................................................................tttaattttgtaaagataattctgttaaaaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttataat..................................................................................................... Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 7.0E-17 bit: 89.7 Len: 137 Query Start:143 Query End:279 Subject Strand: POSITIVE Subject Start: 9 Subject End: 145 ..............................................................................................................................................gttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataat..................................................................................................... ..............................................................................................................................................gttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaat..................................................................................................... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 7.0E-17 bit: 89.7 Len: 133 Query Start:142 Query End:274 Subject Strand: NEGATIVE Subject Start: 97 Subject End: 229 .............................................................................................................................................agttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... .............................................................................................................................................agttttgtaaagataattctgttaaaaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt.......................................................................................................... Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 7.0E-17 bit: 89.7 Len: 141 Query Start:140 Query End:280 Subject Strand: POSITIVE Subject Start: 46 Subject End: 186 ...........................................................................................................................................ttagttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataata.................................................................................................... ...........................................................................................................................................ttagttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaata.................................................................................................... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 135 Query Start:145 Query End:279 Subject Strand: POSITIVE Subject Start: 480 Subject End: 614 ................................................................................................................................................tttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataat..................................................................................................... ................................................................................................................................................tttgtaaagataattctgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat..................................................................................................... Subject: pint_PI0652_PI0653|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[595853,596185]|333 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 137 Query Start:143 Query End:279 Subject Strand: POSITIVE Subject Start: 146 Subject End: 282 ..............................................................................................................................................gttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataat..................................................................................................... ..............................................................................................................................................gttttgtaaagataattctgaagaaaaacgataatttcgatttggcactgcgaaagtgtaggttttaccgtccaaaagcggctcttttgccttgcaaaacctacgcttttggaatgcaaaacaataggttttgtaat..................................................................................................... Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 6.0E-14 bit: 79.8 Len: 100 Query Start:175 Query End:274 Subject Strand: NEGATIVE Subject Start: 411 Subject End: 510 ..............................................................................................................................................................................aatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... ..............................................................................................................................................................................aatttcgttttgacgttgcgaaagcggctgttttgcgaggtaaaacctacgcttttgccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.......................................................................................................... Subject: pint_PI1728_PI1729|ATP-dependent Clp protease, proteolytic subunit:FKBP-type peptidyl-prolyl cis-trans isomerase, trigger factor|POSITIVE:POSITIVE|[1647719,1648555]|837 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 138 Query Start:141 Query End:278 Subject Strand: NEGATIVE Subject Start: 412 Subject End: 549 ............................................................................................................................................tagttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataa...................................................................................................... ............................................................................................................................................tagttttgtaaagataattcgttgagaaaacggtaatttcgatttgacgttgcaaaagcgtaggttttgcaaggcaaaagagccgcttttaccgtgcaaaagcggctcttttacaatgcgaaacaataggttttataa...................................................................................................... Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 4.0E-12 bit: 73.8 Len: 137 Query Start:144 Query End:280 Subject Strand: NEGATIVE Subject Start: 89 Subject End: 225 ...............................................................................................................................................ttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataata.................................................................................................... ...............................................................................................................................................ttttgtaaagataattctgttaaaaactgataactgcgctttgacgttgcgaaagcggctcttttacgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgtaata.................................................................................................... Subject: pint_PI1915_PI1916|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1859967,1860350]|384 HSP 1 e-value: 2.0E-11 bit: 71.9 Len: 68 Query Start:144 Query End:211 Subject Strand: POSITIVE Subject Start: 114 Subject End: 181 ...............................................................................................................................................ttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgca......................................................................................................................................................................... ...............................................................................................................................................ttttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgca......................................................................................................................................................................... HSP 2 e-value: 2.0E-11 bit: 71.9 Len: 40 Query Start:246 Query End:285 Subject Strand: POSITIVE Subject Start: 216 Subject End: 255 .....................................................................................................................................................................................................................................................cgcttttggaatgcaaaacaataggttttataatatattg............................................................................................... .....................................................................................................................................................................................................................................................cgcttttggaatgcaaaacaataggttttataatgtattg............................................................................................... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 1.0E-9 bit: 65.9 Len: 132 Query Start:143 Query End:274 Subject Strand: NEGATIVE Subject Start: 332 Subject End: 463 ..............................................................................................................................................gttttgtaaagataattctgataa-aaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... ..............................................................................................................................................gttttgtaaagataattc-gttaagaaaacgataatttcgatttgacgttgcgaaagcagctcttttgcaacgcaaaacctatgcttttaccgtgcaaaacagccgcttttaggatgcaaaacaataggtttt.......................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUUCCAAACAUGCAAGAAUAUGCCAAUAUUUUUGCAUCUCUUUAACAUUUUUACCGAAUACUACACAGUUAUUCACCAUUGAACUUUAUAUGGUUCCCAAUUUCUGAAACGCUUAAAAAGUCAAUCAAGAUGUUUAUUUAGUUUUGUAAAGAUAAUUCUGAUAAAAAACAGCAAUUUCGGUUUGACAUUGCGAAAGCGGCUGUUUUGCAUUUCAAAACAGCCGCUUUUACCGUGUAAAACCUACGCUUUUGGAAUGCAAAACAAUAGGUUUUAUAAUAUAUUGGUAAUGAGAAGGUUAGAGUAUAGAUGUUCUUAUGAAGAAUAUUUACAUAUCUACAAACUUCUUCUCGCCUCAAAAUGGACUAUGAAGAGCCGCUA ...........((((((((((((....))))))))))))(((((((...........(((((((....)).))))).((((((((((......))))).....(((..(((.((................(.(((((..((((..((((....))))..))))....))))).)......(((((.((((.(..(((((((((((((((.....)))))))))))))))..).)))).)))))...)))))..)))...(((((.....)))))..........((..(.((((((..((((...((((((((((.....))))))))))....))))....)))))).)..))....)))))....)))))))...... (-97.10) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGCGGCUCUUCAUAGUCCAUUUUGAGGCGAGAAGAAGUUUGUAGAUAUGUAAAUAUUCUUCAUAAGAACAUCUAUACUCUAACCUUCUCAUUACCAAUAUAUUAUAAAACCUAUUGUUUUGCAUUCCAAAAGCGUAGGUUUUACACGGUAAAAGCGGCUGUUUUGAAAUGCAAAACAGCCGCUUUCGCAAUGUCAAACCGAAAUUGCUGUUUUUUAUCAGAAUUAUCUUUACAAAACUAAAUAAACAUCUUGAUUGACUUUUUAAGCGUUUCAGAAAUUGGGAACCAUAUAAAGUUCAAUGGUGAAUAACUGUGUAGUAUUCGGUAAAAAUGUUAAAGAGAUGCAAAAAUAUUGGCAUAUUCUUGCAUGUUUGGAAUUA ((.(((..((.(((((((((((((((((((..((((((((...((((.((((((.(((((....((((((...................................((((((((((.(((((........))))))))))))))).......(((((((((((((((.....))))))))))))))).(((((.((.....)).))))).))))))....)))))....)))))).............)))).....))))))))...))))))))))..)))..(((((..........))))).....)))))).))...))).)).....(((..(((.((((((.(((((....))))).)))))).)))..))).. (-93.74) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 885 270 221 122 73 pint:PI0851|5end_hypothetical_protein_784310..784540_POSITIVE 885 270 221 122 73 pint:PI0841|5end_hypothetical_protein_775406..775636_POSITIVE 885 270 221 67 18 pint:PI0200|5end_hypothetical_protein_191545..191775_POSITIVE 885 270 221 67 18 pint:PI0182|5end_hypothetical_protein_174093..174323_POSITIVE 859 270 221 78 29 pint:PI0755|5end_hypothetical_protein_686691..686921_POSITIVE 857 270 221 144 95 pint:PI0157|5end_hypothetical_protein_151185..151415_POSITIVE 824 269 221 231 183 pint:PI0159|5end_hypothetical_protein_151273..151503_POSITIVE 814 270 221 221 172 pint:PI2111|5end_conserved_hypothetical_protein_2062771..2063001_POSITIVE 775 270 221 67 18 pint:PI1733|5end_hypothetical_protein_1652160..1652390_POSITIVE 714 270 221 67 18 pint:PI2131|5end_hypothetical_protein_2080678..2080908_POSITIVE 699 250 204 229 183 pint:PI0842|5end_5-formyltetrahydrofolate_cyclo-ligase_775533..775763_POSITIVE 698 270 221 103 54 pint:PI2128|5end_hypothetical_protein_2076512..2076742_POSITIVE 691 240 191 65 16 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 691 270 224 95 49 pint:PI1694|5end_hypothetical_protein_1609717..1609947_POSITIVE 691 240 191 65 16 pint:PI1567|5end_hypothetical_protein_1489229..1489459_POSITIVE 691 240 191 207 158 pint:PI1486|5end_alginate_O-acetylation_protein_1405507..1405737_POSITIVE 691 240 191 191 142 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 687 270 224 52 6 pint:PI1905|5end_hypothetical_protein_1847628..1847858_POSITIVE 687 270 224 95 49 pint:PI1346|5end_hypothetical_protein_1260814..1261044_POSITIVE 687 270 224 56 10 pint:PI1339|5end_hypothetical_protein_1256671..1256901_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 808 240 191 147 98 pint:PI0158|3end_hypothetical_protein_151298..151448_POSITIVE 736 240 191 141 92 pint:PI0182|3end_hypothetical_protein_174277..174427_POSITIVE 687 270 224 137 91 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 687 270 224 50 4 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 687 270 224 50 4 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE 687 270 224 78 32 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 672 240 191 151 102 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 672 240 191 147 98 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 658 270 224 137 91 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 629 240 191 147 98 pint:PI0200|3end_hypothetical_protein_191735..191885_POSITIVE 625 240 191 147 98 pint:PI2011|3end_hypothetical_protein_1970730..1970880_POSITIVE 619 240 191 147 98 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 619 270 225 46 1 pint:PI1051|3end_hypothetical_protein_970228..970378_POSITIVE 619 240 191 147 98 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 610 270 224 78 32 pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE 609 220 175 148 103 pint:PI1905|3end_hypothetical_protein_1847854..1848004_POSITIVE 600 240 191 147 98 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 595 274 231 48 5 pint:PI0669|3end_hypothetical_protein_611147..611297_POSITIVE 591 240 191 121 72 pint:PI1356|3end_hypothetical_protein_1273340..1273490_POSITIVE 591 240 191 147 98 pint:PI0004|3end_hypothetical_protein_6389..6539_POSITIVE