Origin IGS: taaaagatgtatttataattccttaatcgattaaaacgcaatgcaccgatgaaacgtgtaaatagcttcatcggtgcatttgttttttatttgcactgccgttaaacgagtttggcagaggttttatgcagaactgcttttccttttattattcaagggagatgcttaaaaagctcttcaattttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagacggtagatgtttttataaaaaatatttacatatctgtaagcttcttctcgcctcaaaatggactgtgaagagccgcta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tagcggctcttcacagtccattttgaggcgagaagaagcttacagatatgtaaatattttttataaaaacatctaccgtctaaccttctcattaccaatatattataaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctgttttgcaatgcaaaacagccgcttttgcaatgtcaaaccgaaattgctgttttttatcagaattatctttacaaaattgaagagctttttaagcatctcccttgaataataaaaggaaaagcagttctgcataaaacctctgccaaactcgtttaacggcagtgcaaataaaaaacaaatgcaccgatgaagctatttacacgtttcatcggtgcattgcgttttaatcgattaaggaattataaatacatctttta Mask Tandem Repeat Region ================================================ taaaagatgtatttataattccttaatcgattaaaacgcaatgcaccgatgaaacgtgtaaatagcttcatcggtgcatttgttttttatttgcactgccgttaaacgagtttggcagaggttttatgcagaactgcttttccttttattattcaagggagatgcttaaaaagctcttcaattttgtaaagataattctgataaaaaacagcaatttcggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagacggtagatgtttttataaaaaatatttacatatctgtaagcttcttctcgcctcaaaatggactgtgaagagccgcta Find is-nt database================================================ Query_seq: PI1958:PI1959|PI1958:PI1959:hypothetical protein:hypothetical protein:->->:1917430..1917847 418 taaaagatgtatttataattccttaatcgattaaaacgcaatgcaccgatgaaacgtgtaaatagcttcatcggtgcatttgttttttatttgcactgccgttaaacgagtttggcagaggttttatgcagaactgcttttccttttattattcaagggagatgcttaaaaagctcttcaattttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagacggtagatgtttttataaaaaatatttacatatctgtaagcttcttctcgcctcaaaatggactgtgaagagccgcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1958:PI1959|PI1958:PI1959:hypothetical protein:hypothetical protein:->->:1917430..1917847 418 taaaagatgtatttataattccttaatcgattaaaacgcaatgcaccgatgaaacgtgtaaatagcttcatcggtgcatttgttttttatttgcactgccgttaaacgagtttggcagaggttttatgcagaactgcttttccttttattattcaagggagatgcttaaaaagctcttcaattttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagacggtagatgtttttataaaaaatatttacatatctgtaagcttcttctcgcctcaaaatggactgtgaagagccgcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1958:PI1959|PI1958:PI1959:hypothetical protein:hypothetical protein:->->:1917430..1917847 418 taaaagatgtatttataattccttaatcgattaaaacgcaatgcaccgatgaaacgtgtaaatagcttcatcggtgcatttgttttttatttgcactgccgttaaacgagtttggcagaggttttatgcagaactgcttttccttttattattcaagggagatgcttaaaaagctcttcaattttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagacggtagatgtttttataaaaaatatttacatatctgtaagcttcttctcgcctcaaaatggactgtgaagagccgcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taaaagatgtatttataattccttaatcgattaaaacgcaatgcaccgatgaaacgtgtaaatagcttcatcggtgcatttgttttttatttgcactgccgttaaacgagtttggcagaggttttatgcagaactgcttttccttttattattcaagggagatgcttaaaaagctcttcaattttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagacggtagatgtttttataaaaaatatttacatatctgtaagcttcttctcgcctcaaaatggactgtgaagagccgcta Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 62 End: 166 ............................................................. M A S S V H L F F I C T A V K R V W Q R F Y A E L L F L L L F K G D A ............................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 78 End: 416 ............................................................................. M C F L F A L P L N E F G R G F M Q N C F S F Y Y S R E M L K K L F N F V K I I L I K N S N F G L T L Q K R L F C I A K .. Protein_Len: 60 Strand: - Start: 181 End: 399 .................................................................................................................................................................................... N S M A F A A T K C Q L V A A K V T Y F R R K Q F A F C Y T K Y Y I P L S F T L R Y I N K Y F I N V Y R Y A E E R R L M ................... Protein_Len: 35 Strand: - Start: 156 End: 260 ........................................................................................................................................................... P L H K F L E E I K Y L Y N Q Y F V A I E T Q C Q L L P Q K A N C F M .............................................................................................................................................................. Protein_Len: 33 Strand: - Start: 152 End: 250 ....................................................................................................................................................... E L S I S L F S K L K T F I I R I F F L L K P K V N C F R S N Q M ........................................................................................................................................................................ taaaagatgtatttataattccttaatcgattaaaacgcaatgcaccgatgaaacgtgtaaatagcttcatcggtgcatttgttttttatttgcactgccgttaaacgagtttggcagaggttttatgcagaactgcttttccttttattattcaagggagatgcttaaaaagctcttcaattttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagacggtagatgtttttataaaaaatatttacatatctgtaagcttcttctcgcctcaaaatggactgtgaagagccgcta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 85 Start: 288 End: 317 ...............................................................................................................................................................................................................................................................................................TTTGGAATGCAAAACAATAGGTTTTATAAT..................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taaaagatgtatttataattccttaatcgattaaaacgcaatgcaccgatgaaacgtgtaaatagcttcatcggtgcatttgttttttatttgcactgccgttaaacgagtttggcagaggttttatgcagaactgcttttccttttattattcaagggagatgcttaaaaagctcttcaattttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagacggtagatgtttttataaaaaatatttacatatctgtaagcttcttctcgcctcaaaatggactgtgaagagccgcta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 81 HP_score: -7.8 Tail_Score: -4.30978 Start: 37 End: 82 Full_Region: agtgcaaataaaaaa caaatgcaccgatgaagc tatttacac gtttcatcggtgcattgcg ttttaatcgattaag ....................................caaatgcaccgatgaagctatttacacgtttcatcggtgcattgcg................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 100 HP_score: -9.1 Tail_Score: -5.64421 Start: 39 End: 82 Full_Region: TAATCGATTAAAACG CAATGCACCGATGAAAC GTGTAAATA GCTTCATCGGTGCATTTG TTTTTTATTTGCACT ......................................CAATGCACCGATGAAACGTGTAAATAGCTTCATCGGTGCATTTG................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 100 HP_score: -11.0 Tail_Score: -5.26158 Start: 42 End: 78 Full_Region: TCGATTAAAACGCAA TGCACCGATGAAAC GTGTAAATA GCTTCATCGGTGCA TTTGTTTTTTATTTG .........................................TGCACCGATGAAACGTGTAAATAGCTTCATCGGTGCA.................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 93 HP_score: -13.2 Tail_Score: -3.39521 Start: 42 End: 78 Full_Region: caaataaaaaacaaa tgcaccgatgaagc tatttacac gtttcatcggtgca ttgcgttttaatcga .........................................tgcaccgatgaagctatttacacgtttcatcggtgca.................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 59 HP_score: -4.0 Tail_Score: -4.25873 Start: 211 End: 231 Full_Region: aaaacagccgctttt gcaatgtc aaacc gaaattgc tgttttttatcagaa ..................................................................................................................................................................................................................gcaatgtcaaaccgaaattgc........................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -21.9 Tail_Score: -4.16943 Start: 236 End: 264 Full_Region: TTTGACATTGCAAAA GCGGCTGTTTTGC ATT GCAAAACAGCCGC TTTTACCGTGTAAAA ...........................................................................................................................................................................................................................................GCGGCTGTTTTGCATTGCAAAACAGCCGC.......................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -21.9 Tail_Score: -4.16943 Start: 236 End: 264 Full_Region: ttttacacggtaaaa gcggctgttttgc aat gcaaaacagccgc ttttgcaatgtcaaa ...........................................................................................................................................................................................................................................gcggctgttttgcaatgcaaaacagccgc.......................................................................................................................................................... TransTerm Strand: + Conf: 43 HP_score: -3.3 Tail_Score: -2.77416 Start: 275 End: 313 Full_Region: GCCGCTTTTACCGTG TAAAACCTACGCTTTTG GAATG CAAAACAATAGGTTTTA TAATATATTGGTAAT ..................................................................................................................................................................................................................................................................................TAAAACCTACGCTTTTGGAATGCAAAACAATAGGTTTTA......................................................................................................... Find igs database================================================ Query_seq: PI1958:PI1959|PI1958:PI1959:hypothetical protein:hypothetical protein:->->:1917430..1917847 418 taaaagatgtatttataattccttaatcgattaaaacgcaatgcaccgatgaaacgtgtaaatagcttcatcggtgcatttgttttttatttgcactgccgttaaacgagtttggcagaggttttatgcagaactgcttttccttttattattcaagggagatgcttaaaaagctcttcaattttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagacggtagatgtttttataaaaaatatttacatatctgtaagcttcttctcgcctcaaaatggactgtgaagagccgcta Intra-Species Hit: Count: 38 Min: 1 Max: 418 Len: 418 Subject: pint_PI1958_PI1959|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1917430,1917847]|418 HSP 1 e-value: 0.0 bit: 829.0 Len: 418 Query Start:1 Query End:418 Subject Strand: POSITIVE Subject Start: 1 Subject End: 418 taaaagatgtatttataattccttaatcgattaaaacgcaatgcaccgatgaaacgtgtaaatagcttcatcggtgcatttgttttttatttgcactgccgttaaacgagtttggcagaggttttatgcagaactgcttttccttttattattcaagggagatgcttaaaaagctcttcaattttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagacggtagatgtttttataaaaaatatttacatatctgtaagcttcttctcgcctcaaaatggactgtgaagagccgcta taaaagatgtatttataattccttaatcgattaaaacgcaatgcaccgatgaaacgtgtaaatagcttcatcggtgcatttgttttttatttgcactgccgttaaacgagtttggcagaggttttatgcagaactgcttttccttttattattcaagggagatgcttaaaaagctcttcaattttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagacggtagatgtttttataaaaaatatttacatatctgtaagcttcttctcgcctcaaaatggactgtgaagagccgcta HSP 2 e-value: 1.0E-9 bit: 65.9 Len: 37 Query Start:232 Query End:268 Subject Strand: NEGATIVE Subject Start: 232 Subject End: 268 .......................................................................................................................................................................................................................................aaaagcggctgttttgcattgcaaaacagccgctttt...................................................................................................................................................... .......................................................................................................................................................................................................................................aaaagcggctgttttgcaatgcaaaacagccgctttt...................................................................................................................................................... Subject: pint_PI1981_PI1982|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1938199,1938578]|380 HSP 1 e-value: 1.0E-103 bit: 375.0 Len: 237 Query Start:182 Query End:418 Subject Strand: POSITIVE Subject Start: 144 Subject End: 380 .....................................................................................................................................................................................ttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagacggtagatgtttttataaaaaatatttacatatctgtaagcttcttctcgcctcaaaatggactgtgaagagccgcta .....................................................................................................................................................................................ttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagagtatagatgttcttatgaagaatatttacatatctacaaacttcttctcgcctcaaaatggactatgaagagccgcta HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:232 Query End:267 Subject Strand: NEGATIVE Subject Start: 195 Subject End: 230 .......................................................................................................................................................................................................................................aaaagcggctgttttgcattgcaaaacagccgcttt....................................................................................................................................................... .......................................................................................................................................................................................................................................aaaagcggctgttttgaaatgcaaaacagccgcttt....................................................................................................................................................... Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 2.0E-39 bit: 165.0 Len: 131 Query Start:182 Query End:312 Subject Strand: NEGATIVE Subject Start: 57 Subject End: 187 .....................................................................................................................................................................................ttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... .....................................................................................................................................................................................ttttgtaaagataattccgacgaaaaacggtaatttcgatttggcgttgcgaaagcggctgttttgcagcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:232 Query End:267 Subject Strand: POSITIVE Subject Start: 101 Subject End: 136 .......................................................................................................................................................................................................................................aaaagcggctgttttgcattgcaaaacagccgcttt....................................................................................................................................................... .......................................................................................................................................................................................................................................aaaagcggctgttttgcgctgcaaaacagccgcttt....................................................................................................................................................... Subject: pint_PI0195_PI0196|epimerase/reductase:hypothetical protein|POSITIVE:POSITIVE|[188263,188574]|312 HSP 1 e-value: 2.0E-39 bit: 165.0 Len: 107 Query Start:212 Query End:318 Subject Strand: POSITIVE Subject Start: 175 Subject End: 281 ...................................................................................................................................................................................................................caatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataata.................................................................................................... ...................................................................................................................................................................................................................caatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaata.................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:232 Query End:267 Subject Strand: NEGATIVE Subject Start: 196 Subject End: 231 .......................................................................................................................................................................................................................................aaaagcggctgttttgcattgcaaaacagccgcttt....................................................................................................................................................... .......................................................................................................................................................................................................................................aaaagcggctgttttgcgatgcaaaacagccgcttt....................................................................................................................................................... Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 2.0E-35 bit: 151.0 Len: 100 Query Start:213 Query End:312 Subject Strand: NEGATIVE Subject Start: 107 Subject End: 206 ....................................................................................................................................................................................................................aatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... ....................................................................................................................................................................................................................aatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacagccgcttttgccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... HSP 2 e-value: 3.0E-10 bit: 67.9 Len: 38 Query Start:230 Query End:267 Subject Strand: POSITIVE Subject Start: 149 Subject End: 186 .....................................................................................................................................................................................................................................gcaaaagcggctgttttgcattgcaaaacagccgcttt....................................................................................................................................................... .....................................................................................................................................................................................................................................gcaaaagcggctgttttgcgttgcaaaacagccgcttt....................................................................................................................................................... Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 9.0E-35 bit: 149.0 Len: 103 Query Start:221 Query End:323 Subject Strand: POSITIVE Subject Start: 226 Subject End: 328 ............................................................................................................................................................................................................................tttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattg............................................................................................... ............................................................................................................................................................................................................................tttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattg............................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:232 Query End:267 Subject Strand: NEGATIVE Subject Start: 238 Subject End: 273 .......................................................................................................................................................................................................................................aaaagcggctgttttgcattgcaaaacagccgcttt....................................................................................................................................................... .......................................................................................................................................................................................................................................aaaagcggctgttttgcgttgcaaaacagccacttt....................................................................................................................................................... Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 6.0E-33 bit: 143.0 Len: 100 Query Start:213 Query End:312 Subject Strand: POSITIVE Subject Start: 172 Subject End: 271 ....................................................................................................................................................................................................................aatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... ....................................................................................................................................................................................................................aatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggtttt.......................................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:233 Query End:267 Subject Strand: NEGATIVE Subject Start: 192 Subject End: 226 ........................................................................................................................................................................................................................................aaagcggctgttttgcattgcaaaacagccgcttt....................................................................................................................................................... ........................................................................................................................................................................................................................................aaagcggctgttttgcgatgcaaaacagccgcttt....................................................................................................................................................... Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 9.0E-32 bit: 139.0 Len: 106 Query Start:213 Query End:318 Subject Strand: NEGATIVE Subject Start: 227 Subject End: 332 ....................................................................................................................................................................................................................aatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataata.................................................................................................... ....................................................................................................................................................................................................................aatttcgatttggcattgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacacttttggaatgcaaaacaataggttttataata.................................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 27 Query Start:232 Query End:258 Subject Strand: POSITIVE Subject Start: 277 Subject End: 303 .......................................................................................................................................................................................................................................aaaagcggctgttttgcattgcaaaac................................................................................................................................................................ .......................................................................................................................................................................................................................................aaaagcggctgttttgcattgcaaaac................................................................................................................................................................ Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 1.0E-30 bit: 135.0 Len: 100 Query Start:213 Query End:312 Subject Strand: POSITIVE Subject Start: 175 Subject End: 274 ....................................................................................................................................................................................................................aatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... ....................................................................................................................................................................................................................aatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 1.0E-30 bit: 135.0 Len: 132 Query Start:182 Query End:313 Subject Strand: NEGATIVE Subject Start: 178 Subject End: 309 .....................................................................................................................................................................................ttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttta......................................................................................................... .....................................................................................................................................................................................ttttgtaaagataattttattaaaaagtggcaattgcgttttgacattgcaaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcgaaacaataggtttta......................................................................................................... Subject: pint_PI0854_PI0855|MiaB-like tRNA modifying enzyme:hypothetical protein|POSITIVE:POSITIVE|[788060,789233]|1174 HSP 1 e-value: 5.0E-30 bit: 133.0 Len: 107 Query Start:213 Query End:319 Subject Strand: POSITIVE Subject Start: 772 Subject End: 878 ....................................................................................................................................................................................................................aatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatat................................................................................................... ....................................................................................................................................................................................................................aatttcgatttggcgttgcgaaagcgtaggttttgcaacgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttataatat................................................................................................... Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 1.0E-27 bit: 125.0 Len: 135 Query Start:183 Query End:317 Subject Strand: NEGATIVE Subject Start: 382 Subject End: 516 ......................................................................................................................................................................................tttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataat..................................................................................................... ......................................................................................................................................................................................tttgtaaagataattctgatgaaaaatgataatttcgatttggcattgcgaaagcggctgttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat..................................................................................................... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 1.0E-27 bit: 125.0 Len: 131 Query Start:183 Query End:313 Subject Strand: NEGATIVE Subject Start: 178 Subject End: 308 ......................................................................................................................................................................................tttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttta......................................................................................................... ......................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttta......................................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 27 Query Start:232 Query End:258 Subject Strand: POSITIVE Subject Start: 223 Subject End: 249 .......................................................................................................................................................................................................................................aaaagcggctgttttgcattgcaaaac................................................................................................................................................................ .......................................................................................................................................................................................................................................aaaagcggctgttttgcattgcaaaac................................................................................................................................................................ Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 8.0E-26 bit: 119.0 Len: 104 Query Start:213 Query End:316 Subject Strand: NEGATIVE Subject Start: 170 Subject End: 273 ....................................................................................................................................................................................................................aatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataa...................................................................................................... ....................................................................................................................................................................................................................aatttcgatttgacgttgcgaaagcgtatgttttgcgatgcaaaagagccgcttttaccgtgcaaaacctacgcttttacaatgcaaaacaataggttttataa...................................................................................................... Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 3.0E-25 bit: 117.0 Len: 131 Query Start:182 Query End:312 Subject Strand: NEGATIVE Subject Start: 41 Subject End: 171 .....................................................................................................................................................................................ttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... .....................................................................................................................................................................................ttttgtaaagataattctgatgaaaaacaataatttcgttttgacgttgcgaaagcggctcttttacaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggtttt.......................................................................................................... Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 157 Query Start:176 Query End:332 Subject Strand: POSITIVE Subject Start: 149 Subject End: 305 ...............................................................................................................................................................................cttcaattttgtaaagataattctgataa-aaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgaga...................................................................................... ...............................................................................................................................................................................cttcgattttgtaaagataattc-gttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgaga...................................................................................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 142 Query Start:182 Query End:323 Subject Strand: POSITIVE Subject Start: 146 Subject End: 287 .....................................................................................................................................................................................ttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattg............................................................................................... .....................................................................................................................................................................................ttttgtaaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacattg............................................................................................... Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 5.0E-24 bit: 113.0 Len: 137 Query Start:182 Query End:318 Subject Strand: POSITIVE Subject Start: 215 Subject End: 351 .....................................................................................................................................................................................ttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataata.................................................................................................... .....................................................................................................................................................................................ttttgtaaagataatttcgctgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttacaata.................................................................................................... Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 5.0E-21 bit: 103.0 Len: 104 Query Start:213 Query End:316 Subject Strand: POSITIVE Subject Start: 100 Subject End: 203 ....................................................................................................................................................................................................................aatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataa...................................................................................................... ....................................................................................................................................................................................................................aatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataa...................................................................................................... Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 5.0E-21 bit: 103.0 Len: 100 Query Start:213 Query End:312 Subject Strand: NEGATIVE Subject Start: 88 Subject End: 187 ....................................................................................................................................................................................................................aatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... ....................................................................................................................................................................................................................aatttcgatttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.......................................................................................................... Subject: pint_PI0694_PI0695|Na+/dicarboxylate or sulfate symporter:xanthine/uracil permease family protein|POSITIVE:POSITIVE|[631238,631552]|315 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 131 Query Start:182 Query End:312 Subject Strand: POSITIVE Subject Start: 88 Subject End: 218 .....................................................................................................................................................................................ttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... .....................................................................................................................................................................................ttttgtaaagataattccgacggaaaacggtaatttcgatttgacactgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggtttt.......................................................................................................... Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 3.0E-19 bit: 97.6 Len: 133 Query Start:180 Query End:312 Subject Strand: NEGATIVE Subject Start: 305 Subject End: 437 ...................................................................................................................................................................................aattttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... ...................................................................................................................................................................................aattttgtaaagataattctcttaaaaagtgataactgcgctttgacgttgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.......................................................................................................... Subject: pint_PI1803_PI1804|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1737852,1738248]|397 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 132 Query Start:182 Query End:313 Subject Strand: POSITIVE Subject Start: 266 Subject End: 397 .....................................................................................................................................................................................ttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttta......................................................................................................... .....................................................................................................................................................................................ttttgtaaagattattccgaaagaaaacggtaatttcgatttggcattgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttacaatgcaaaacaataggtttta......................................................................................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 100 Query Start:213 Query End:312 Subject Strand: POSITIVE Subject Start: 122 Subject End: 221 ....................................................................................................................................................................................................................aatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... ....................................................................................................................................................................................................................aatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggtttt.......................................................................................................... Subject: pint_PI2056_PI2057|conserved hypothetical protein:conserved hypothetical protein; possible metal-dependent membrane protease|POSITIVE:POSITIVE|[2014489,2015078]|590 HSP 1 e-value: 5.0E-18 bit: 93.7 Len: 138 Query Start:181 Query End:318 Subject Strand: POSITIVE Subject Start: 340 Subject End: 477 ....................................................................................................................................................................................attttgtaaagataattctgataa-aaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataata.................................................................................................... ....................................................................................................................................................................................attttgtaaagataattc-gttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaata.................................................................................................... Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 5.0E-18 bit: 93.7 Len: 131 Query Start:182 Query End:312 Subject Strand: NEGATIVE Subject Start: 98 Subject End: 228 .....................................................................................................................................................................................ttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... .....................................................................................................................................................................................ttttgtaaagataattctgttaaaaactgataactgcgttttgacattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggtttt.......................................................................................................... Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 5.0E-18 bit: 93.7 Len: 131 Query Start:182 Query End:312 Subject Strand: POSITIVE Subject Start: 114 Subject End: 244 .....................................................................................................................................................................................ttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... .....................................................................................................................................................................................ttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.......................................................................................................... Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 138 Query Start:180 Query End:317 Subject Strand: POSITIVE Subject Start: 109 Subject End: 246 ...................................................................................................................................................................................aattttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataat..................................................................................................... ...................................................................................................................................................................................aattttgtaaagataattctgttaaaaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttataat..................................................................................................... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 130 Query Start:183 Query End:312 Subject Strand: POSITIVE Subject Start: 60 Subject End: 189 ......................................................................................................................................................................................tttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... ......................................................................................................................................................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggtttt.......................................................................................................... Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 7.0E-17 bit: 89.7 Len: 105 Query Start:213 Query End:317 Subject Strand: POSITIVE Subject Start: 144 Subject End: 248 ....................................................................................................................................................................................................................aatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataat..................................................................................................... ....................................................................................................................................................................................................................aatttcgatttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat..................................................................................................... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 7.0E-17 bit: 89.7 Len: 137 Query Start:176 Query End:312 Subject Strand: NEGATIVE Subject Start: 97 Subject End: 233 ...............................................................................................................................................................................cttcaattttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... ...............................................................................................................................................................................cttcagttttgtaaagataattctgttaaaaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt.......................................................................................................... Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 136 Query Start:182 Query End:317 Subject Strand: POSITIVE Subject Start: 10 Subject End: 145 .....................................................................................................................................................................................ttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataat..................................................................................................... .....................................................................................................................................................................................ttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaat..................................................................................................... Subject: pint_PI1728_PI1729|ATP-dependent Clp protease, proteolytic subunit:FKBP-type peptidyl-prolyl cis-trans isomerase, trigger factor|POSITIVE:POSITIVE|[1647719,1648555]|837 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 135 Query Start:182 Query End:316 Subject Strand: NEGATIVE Subject Start: 412 Subject End: 546 .....................................................................................................................................................................................ttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataa...................................................................................................... .....................................................................................................................................................................................ttttgtaaagataattcgttgagaaaacggtaatttcgatttgacgttgcaaaagcgtaggttttgcaaggcaaaagagccgcttttaccgtgcaaaagcggctcttttacaatgcgaaacaataggttttataa...................................................................................................... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 135 Query Start:183 Query End:317 Subject Strand: POSITIVE Subject Start: 480 Subject End: 614 ......................................................................................................................................................................................tttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataat..................................................................................................... ......................................................................................................................................................................................tttgtaaagataattctgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat..................................................................................................... Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 7.0E-14 bit: 79.8 Len: 100 Query Start:213 Query End:312 Subject Strand: NEGATIVE Subject Start: 411 Subject End: 510 ....................................................................................................................................................................................................................aatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... ....................................................................................................................................................................................................................aatttcgttttgacgttgcgaaagcggctgttttgcgaggtaaaacctacgcttttgccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.......................................................................................................... Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 4.0E-12 bit: 73.8 Len: 137 Query Start:182 Query End:318 Subject Strand: NEGATIVE Subject Start: 89 Subject End: 225 .....................................................................................................................................................................................ttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataata.................................................................................................... .....................................................................................................................................................................................ttttgtaaagataattctgttaaaaactgataactgcgctttgacgttgcgaaagcggctcttttacgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgtaata.................................................................................................... Subject: pint_PI1915_PI1916|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1859967,1860350]|384 HSP 1 e-value: 2.0E-11 bit: 71.9 Len: 40 Query Start:284 Query End:323 Subject Strand: POSITIVE Subject Start: 216 Subject End: 255 ...........................................................................................................................................................................................................................................................................................cgcttttggaatgcaaaacaataggttttataatatattg............................................................................................... ...........................................................................................................................................................................................................................................................................................cgcttttggaatgcaaaacaataggttttataatgtattg............................................................................................... HSP 2 e-value: 1.0E-9 bit: 65.9 Len: 69 Query Start:181 Query End:249 Subject Strand: POSITIVE Subject Start: 113 Subject End: 181 ....................................................................................................................................................................................attttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgca......................................................................................................................................................................... ....................................................................................................................................................................................attttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgca......................................................................................................................................................................... HSP 3 e-value: 4.0E-6 bit: 54.0 Len: 55 Query Start:226 Query End:280 Subject Strand: NEGATIVE Subject Start: 174 Subject End: 228 .................................................................................................................................................................................................................................cattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaac.......................................................................................................................................... .................................................................................................................................................................................................................................cattccaaaagcggctgttttgcaacgtaaaacatacgcttttaccgtgcaaaac.......................................................................................................................................... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 4.0E-9 bit: 63.9 Len: 100 Query Start:213 Query End:312 Subject Strand: NEGATIVE Subject Start: 332 Subject End: 431 ....................................................................................................................................................................................................................aatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.......................................................................................................... ....................................................................................................................................................................................................................aatttcgatttgacgttgcgaaagcagctcttttgcaacgcaaaacctatgcttttaccgtgcaaaacagccgcttttaggatgcaaaacaataggtttt.......................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAAGAUGUAUUUAUAAUUCCUUAAUCGAUUAAAACGCAAUGCACCGAUGAAACGUGUAAAUAGCUUCAUCGGUGCAUUUGUUUUUUAUUUGCACUGCCGUUAAACGAGUUUGGCAGAGGUUUUAUGCAGAACUGCUUUUCCUUUUAUUAUUCAAGGGAGAUGCUUAAAAAGCUCUUCAAUUUUGUAAAGAUAAUUCUGAUAAAAAACAGCAAUUUCGGUUUGACAUUGCAAAAGCGGCUGUUUUGCAUUGCAAAACAGCCGCUUUUACCGUGUAAAACCUACGCUUUUGGAAUGCAAAACAAUAGGUUUUAUAAUAUAUUGGUAAUGAGAAGGUUAGACGGUAGAUGUUUUUAUAAAAAAUAUUUACAUAUCUGUAAGCUUCUUCUCGCCUCAAAAUGGACUGUGAAGAGCCGCUA ..............((((..((.....(((.(((((.((((((((((((((((.(.........).)))))))))))).)))).))))).)))..((((((...........)))))).))..))))((......((.((((((((........)))))))).)).......((((((((.((((((..(((....))).))))))....(((((.((.....)).))))).((((((((((((((((...))))))))))))))))..((.(((((((((((...(((((.....)))))...))))))))))).......((..(.((((((.(((((..(((((((((((.....)))))))))))...))))..).)))))).)..)).......))....)))))))).)).. (-127.60) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGCGGCUCUUCACAGUCCAUUUUGAGGCGAGAAGAAGCUUACAGAUAUGUAAAUAUUUUUUAUAAAAACAUCUACCGUCUAACCUUCUCAUUACCAAUAUAUUAUAAAACCUAUUGUUUUGCAUUCCAAAAGCGUAGGUUUUACACGGUAAAAGCGGCUGUUUUGCAAUGCAAAACAGCCGCUUUUGCAAUGUCAAACCGAAAUUGCUGUUUUUUAUCAGAAUUAUCUUUACAAAAUUGAAGAGCUUUUUAAGCAUCUCCCUUGAAUAAUAAAAGGAAAAGCAGUUCUGCAUAAAACCUCUGCCAAACUCGUUUAACGGCAGUGCAAAUAAAAAACAAAUGCACCGAUGAAGCUAUUUACACGUUUCAUCGGUGCAUUGCGUUUUAAUCGAUUAAGGAAUUAUAAAUACAUCUUUUA ((((((.(((((...((((.....).)))..)))))...(((((....)))))......................))).)))....................((((((..(((((((.((((((((((..(((((..(((((.(((..(((((((((((((((((((...)))))))))))))))))))..))).)))))......((.(..((((((((((((..((((((......))))))((((((..........((((.........)))))))))).)))))).))))))...).))......)))))...)).))))))))...(((((.((((((((((((((((.........))))))))))))))))..)))))...))))..)))..))))))............ (-119.10) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 886 300 251 114 65 pint:PI0851|5end_hypothetical_protein_784310..784540_POSITIVE 886 300 251 114 65 pint:PI0841|5end_hypothetical_protein_775406..775636_POSITIVE 858 300 251 224 175 pint:PI0159|5end_hypothetical_protein_151273..151503_POSITIVE 858 300 251 136 87 pint:PI0157|5end_hypothetical_protein_151185..151415_POSITIVE 857 310 261 69 20 pint:PI0200|5end_hypothetical_protein_191545..191775_POSITIVE 857 310 261 69 20 pint:PI0182|5end_hypothetical_protein_174093..174323_POSITIVE 831 310 261 80 31 pint:PI0755|5end_hypothetical_protein_686691..686921_POSITIVE 815 300 251 213 164 pint:PI2111|5end_conserved_hypothetical_protein_2062771..2063001_POSITIVE 775 290 242 231 183 pint:PI0842|5end_5-formyltetrahydrofolate_cyclo-ligase_775533..775763_POSITIVE 747 310 261 69 20 pint:PI1733|5end_hypothetical_protein_1652160..1652390_POSITIVE 722 290 242 85 37 pint:PI2128|5end_hypothetical_protein_2076512..2076742_POSITIVE 716 310 262 97 49 pint:PI1694|5end_hypothetical_protein_1609717..1609947_POSITIVE 712 310 262 97 49 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 712 310 262 54 6 pint:PI1905|5end_hypothetical_protein_1847628..1847858_POSITIVE 712 310 262 97 49 pint:PI1346|5end_hypothetical_protein_1260814..1261044_POSITIVE 712 310 262 58 10 pint:PI1339|5end_hypothetical_protein_1256671..1256901_POSITIVE 712 310 262 85 37 pint:PI1129|5end_hypothetical_protein_1055377..1055607_POSITIVE 712 310 262 223 175 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 712 310 262 228 180 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 712 310 262 58 10 pint:PI0104|5end_hypothetical_protein_99105..99335_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 804 280 233 149 102 pint:PI0158|3end_hypothetical_protein_151298..151448_POSITIVE 718 280 233 143 96 pint:PI0182|3end_hypothetical_protein_174277..174427_POSITIVE 712 310 262 139 91 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 712 310 262 52 4 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 712 310 262 52 4 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE 712 310 262 80 32 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 683 310 262 139 91 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 654 280 233 149 102 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 644 310 263 48 1 pint:PI1051|3end_hypothetical_protein_970228..970378_POSITIVE 635 310 262 80 32 pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE 632 280 231 149 100 pint:PI0551|3end_hypothetical_protein_502683..502833_POSITIVE 619 278 233 151 106 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 615 310 265 46 1 pint:PI0669|3end_hypothetical_protein_611147..611297_POSITIVE 601 280 233 149 102 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 588 280 233 149 102 pint:PI2011|3end_hypothetical_protein_1970730..1970880_POSITIVE 583 280 233 149 102 pint:PI0200|3end_hypothetical_protein_191735..191885_POSITIVE 582 280 233 149 102 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 582 280 233 149 102 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 573 272 232 137 100 pint:PI1521|3end_hypothetical_protein_1441461..1441611_POSITIVE 573 272 232 46 9 pint:PI1520|3end_hypothetical_protein_1441370..1441520_POSITIVE