Origin IGS: tccacatataaagacgagccttcaaaccataaacaacagccaagtttggcagtgtattattgctatttgaagctaaattcacaatatacttttcagcattgttcaagtctgactcgataaacttaaacatttcttcatgtgtagcacgaggattattacgtgaagctttttcgctcaaagtatcagtaacaataggacaagtaagattcttgacgttataaccttgctcatttgtacatgcagggtttacatcagttggtaagcactcatacatacgtgccatatcaagatagtttgcagcacgataagcatatcccgatccgaggtaacctaactgttcttttgatgccttttctgcgtcaacagcaccaattactaagtttgaagcaaaaacatagctataataatatgtatacacaaactgacctatcaaataagaaggcccaagagctatggttgcagcccaaggactaaactggttatagtcgtggtcttttactacatagtcgtcagccataacatcgcgaatacgcataatagctgaagttccatacgtccaatgatagtttctgttccaaacagatttaccatacgctggcaaccctcttacagcagaagcagtcgccgttgaggaacgtccaatcatctcttgagtaacagcaccaccactacgtggttctgcctcgtcaatacaactggtcattgcagataaggtaagaccagctaaaaggacaccgtatattgatttattgatttttttcatattctttcgtatattttta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taaaaatatacgaaagaatatgaaaaaaatcaataaatcaatatacggtgtccttttagctggtcttaccttatctgcaatgaccagttgtattgacgaggcagaaccacgtagtggtggtgctgttactcaagagatgattggacgttcctcaacggcgactgcttctgctgtaagagggttgccagcgtatggtaaatctgtttggaacagaaactatcattggacgtatggaacttcagctattatgcgtattcgcgatgttatggctgacgactatgtagtaaaagaccacgactataaccagtttagtccttgggctgcaaccatagctcttgggccttcttatttgataggtcagtttgtgtatacatattattatagctatgtttttgcttcaaacttagtaattggtgctgttgacgcagaaaaggcatcaaaagaacagttaggttacctcggatcgggatatgcttatcgtgctgcaaactatcttgatatggcacgtatgtatgagtgcttaccaactgatgtaaaccctgcatgtacaaatgagcaaggttataacgtcaagaatcttacttgtcctattgttactgatactttgagcgaaaaagcttcacgtaataatcctcgtgctacacatgaagaaatgtttaagtttatcgagtcagacttgaacaatgctgaaaagtatattgtgaatttagcttcaaatagcaataatacactgccaaacttggctgttgtttatggtttgaaggctcgtctttatatgtgga Mask Tandem Repeat Region ================================================ tccacatataaagacgagccttcaaaccataaacaacagccaagtttggcagtgtattattgctatttgaagctaaattcacaatatacttttcagcattgttcaagtctgactcgataaacttaaacatttcttcatgtgtagcacgaggattattacgtgaagctttttcgctcaaagtatcagtaacaataggacaagtaagattcttgacgttataaccttgctcatttgtacatgcagggtttacatcagttggtaagcactcatacatacgtgccatatcaagatagtttgcagcacgataagcatatcccgatccgaggtaacctaactgttcttttgatgccttttctgcgtcaacagcaccaattactaagtttgaagcaaaaacatagctataataatatgtatacacaaactgacctatcaaataagaaggcccaagagctatggttgcagcccaaggactaaactggttatagtcgtggtcttttactacatagtcgtcagccataacatcgcgaatacgcataatagctgaagttccatacgtccaatgatagtttctgttccaaacagatttaccatacgctggcaaccctcttacagcagaagcagtcgccgttgaggaacgtccaatcatctcttgagtaacagcaccaccactacgtggttctgcctcgtcaatacaactggtcattgcagataaggtaagaccagctaaaaggacaccgtatattgatttattgatttttttcatattctttcgtatattttta Find is-nt database================================================ Query_seq: PI1939:PI1941|PI1939:PI1941:hypothetical protein:outer membrane receptor; ragA protein:->->:1896727..1897508 782 tccacatataaagacgagccttcaaaccataaacaacagccaagtttggcagtgtattattgctatttgaagctaaattcacaatatacttttcagcattgttcaagtctgactcgataaacttaaacatttcttcatgtgtagcacgaggattattacgtgaagctttttcgctcaaagtatcagtaacaataggacaagtaagattcttgacgttataaccttgctcatttgtacatgcagggtttacatcagttggtaagcactcatacatacgtgccatatcaagatagtttgcagcacgataagcatatcccgatccgaggtaacctaactgttcttttgatgccttttctgcgtcaacagcaccaattactaagtttgaagcaaaaacatagctataataatatgtatacacaaactgacctatcaaataagaaggcccaagagctatggttgcagcccaaggactaaactggttatagtcgtggtcttttactacatagtcgtcagccataacatcgcgaatacgcataatagctgaagttccatacgtccaatgatagtttctgttccaaacagatttaccatacgctggcaaccctcttacagcagaagcagtcgccgttgaggaacgtccaatcatctcttgagtaacagcaccaccactacgtggttctgcctcgtcaatacaactggtcattgcagataaggtaagaccagctaaaaggacaccgtatattgatttattgatttttttcatattctttcgtatattttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1939:PI1941|PI1939:PI1941:hypothetical protein:outer membrane receptor; ragA protein:->->:1896727..1897508 782 tccacatataaagacgagccttcaaaccataaacaacagccaagtttggcagtgtattattgctatttgaagctaaattcacaatatacttttcagcattgttcaagtctgactcgataaacttaaacatttcttcatgtgtagcacgaggattattacgtgaagctttttcgctcaaagtatcagtaacaataggacaagtaagattcttgacgttataaccttgctcatttgtacatgcagggtttacatcagttggtaagcactcatacatacgtgccatatcaagatagtttgcagcacgataagcatatcccgatccgaggtaacctaactgttcttttgatgccttttctgcgtcaacagcaccaattactaagtttgaagcaaaaacatagctataataatatgtatacacaaactgacctatcaaataagaaggcccaagagctatggttgcagcccaaggactaaactggttatagtcgtggtcttttactacatagtcgtcagccataacatcgcgaatacgcataatagctgaagttccatacgtccaatgatagtttctgttccaaacagatttaccatacgctggcaaccctcttacagcagaagcagtcgccgttgaggaacgtccaatcatctcttgagtaacagcaccaccactacgtggttctgcctcgtcaatacaactggtcattgcagataaggtaagaccagctaaaaggacaccgtatattgatttattgatttttttcatattctttcgtatattttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1939:PI1941|PI1939:PI1941:hypothetical protein:outer membrane receptor; ragA protein:->->:1896727..1897508 782 tccacatataaagacgagccttcaaaccataaacaacagccaagtttggcagtgtattattgctatttgaagctaaattcacaatatacttttcagcattgttcaagtctgactcgataaacttaaacatttcttcatgtgtagcacgaggattattacgtgaagctttttcgctcaaagtatcagtaacaataggacaagtaagattcttgacgttataaccttgctcatttgtacatgcagggtttacatcagttggtaagcactcatacatacgtgccatatcaagatagtttgcagcacgataagcatatcccgatccgaggtaacctaactgttcttttgatgccttttctgcgtcaacagcaccaattactaagtttgaagcaaaaacatagctataataatatgtatacacaaactgacctatcaaataagaaggcccaagagctatggttgcagcccaaggactaaactggttatagtcgtggtcttttactacatagtcgtcagccataacatcgcgaatacgcataatagctgaagttccatacgtccaatgatagtttctgttccaaacagatttaccatacgctggcaaccctcttacagcagaagcagtcgccgttgaggaacgtccaatcatctcttgagtaacagcaccaccactacgtggttctgcctcgtcaatacaactggtcattgcagataaggtaagaccagctaaaaggacaccgtatattgatttattgatttttttcatattctttcgtatattttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tccacatataaagacgagccttcaaaccataaacaacagccaagtttggcagtgtattattgctatttgaagctaaattcacaatatacttttcagcattgttcaagtctgactcgataaacttaaacatttcttcatgtgtagcacgaggattattacgtgaagctttttcgctcaaagtatcagtaacaataggacaagtaagattcttgacgttataaccttgctcatttgtacatgcagggtttacatcagttggtaagcactcatacatacgtgccatatcaagatagtttgcagcacgataagcatatcccgatccgaggtaacctaactgttcttttgatgccttttctgcgtcaacagcaccaattactaagtttgaagcaaaaacatagctataataatatgtatacacaaactgacctatcaaataagaaggcccaagagctatggttgcagcccaaggactaaactggttatagtcgtggtcttttactacatagtcgtcagccataacatcgcgaatacgcataatagctgaagttccatacgtccaatgatagtttctgttccaaacagatttaccatacgctggcaaccctcttacagcagaagcagtcgccgttgaggaacgtccaatcatctcttgagtaacagcaccaccactacgtggttctgcctcgtcaatacaactggtcattgcagataaggtaagaccagctaaaaggacaccgtatattgatttattgatttttttcatattctttcgtatattttta Predict ORF larger than 30AA ================================================ Protein_Len: 53 Strand: + Start: 60 End: 218 ........................................................... M L F E A K F T I Y F S A L F K S D S I N L N I S S C V A R G L L R E A F S L K V S V T I G Q V R F L T L .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 232 End: 471 ....................................................................................................................................................................................................................................... M Y M Q G L H Q L V S T H T Y V P Y Q D S L Q H D K H I P I R G N L T V L L M P F L R Q Q H Q L L S L K Q K H S Y N N M ....................................................................................................................................................................................................................................................................................................................... Protein_Len: 49 Strand: + Start: 395 End: 541 .......................................................................................................................................................................................................................................................................................................................................................................................................... M A I I I C I H K L T Y Q I R R P K S Y G C S P R T K L V I V V V F Y Y I V V S H N I A N T H N S ................................................................................................................................................................................................................................................. Protein_Len: 38 Strand: + Start: 541 End: 654 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M K F H T S N D S F C S K Q I Y H T L A T L L Q Q K Q S P L R N V Q S S L E ................................................................................................................................ Protein_Len: 31 Strand: + Start: 690 End: 782 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M Q L V I A D K V R P A K R T P Y I D L L I F F I F F R I F L Protein_Len: 30 Strand: - Start: 502 End: 591 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M T T L W L M A F V C L L Q L E M R G I I T E T G F L N V M ............................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 2 End: 775 . P L G R V A S A T A T S S R G I M E Q T V A G G S R P E A E D I C S T M A S L T L G A L L V G Y I S K N I K K M N K R M ....... tccacatataaagacgagccttcaaaccataaacaacagccaagtttggcagtgtattattgctatttgaagctaaattcacaatatacttttcagcattgttcaagtctgactcgataaacttaaacatttcttcatgtgtagcacgaggattattacgtgaagctttttcgctcaaagtatcagtaacaataggacaagtaagattcttgacgttataaccttgctcatttgtacatgcagggtttacatcagttggtaagcactcatacatacgtgccatatcaagatagtttgcagcacgataagcatatcccgatccgaggtaacctaactgttcttttgatgccttttctgcgtcaacagcaccaattactaagtttgaagcaaaaacatagctataataatatgtatacacaaactgacctatcaaataagaaggcccaagagctatggttgcagcccaaggactaaactggttatagtcgtggtcttttactacatagtcgtcagccataacatcgcgaatacgcataatagctgaagttccatacgtccaatgatagtttctgttccaaacagatttaccatacgctggcaaccctcttacagcagaagcagtcgccgttgaggaacgtccaatcatctcttgagtaacagcaccaccactacgtggttctgcctcgtcaatacaactggtcattgcagataaggtaagaccagctaaaaggacaccgtatattgatttattgatttttttcatattctttcgtatattttta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 84 Start: 749 End: 778 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATTTTTTTCATATTCTTTCGTATATT.... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tccacatataaagacgagccttcaaaccataaacaacagccaagtttggcagtgtattattgctatttgaagctaaattcacaatatacttttcagcattgttcaagtctgactcgataaacttaaacatttcttcatgtgtagcacgaggattattacgtgaagctttttcgctcaaagtatcagtaacaataggacaagtaagattcttgacgttataaccttgctcatttgtacatgcagggtttacatcagttggtaagcactcatacatacgtgccatatcaagatagtttgcagcacgataagcatatcccgatccgaggtaacctaactgttcttttgatgccttttctgcgtcaacagcaccaattactaagtttgaagcaaaaacatagctataataatatgtatacacaaactgacctatcaaataagaaggcccaagagctatggttgcagcccaaggactaaactggttatagtcgtggtcttttactacatagtcgtcagccataacatcgcgaatacgcataatagctgaagttccatacgtccaatgatagtttctgttccaaacagatttaccatacgctggcaaccctcttacagcagaagcagtcgccgttgaggaacgtccaatcatctcttgagtaacagcaccaccactacgtggttctgcctcgtcaatacaactggtcattgcagataaggtaagaccagctaaaaggacaccgtatattgatttattgatttttttcatattctttcgtatattttta Predict TransTerm conf > 70================================================ Find igs database================================================ Query_seq: PI1939:PI1941|PI1939:PI1941:hypothetical protein:outer membrane receptor; ragA protein:->->:1896727..1897508 782 tccacatataaagacgagccttcaaaccataaacaacagccaagtttggcagtgtattattgctatttgaagctaaattcacaatatacttttcagcattgttcaagtctgactcgataaacttaaacatttcttcatgtgtagcacgaggattattacgtgaagctttttcgctcaaagtatcagtaacaataggacaagtaagattcttgacgttataaccttgctcatttgtacatgcagggtttacatcagttggtaagcactcatacatacgtgccatatcaagatagtttgcagcacgataagcatatcccgatccgaggtaacctaactgttcttttgatgccttttctgcgtcaacagcaccaattactaagtttgaagcaaaaacatagctataataatatgtatacacaaactgacctatcaaataagaaggcccaagagctatggttgcagcccaaggactaaactggttatagtcgtggtcttttactacatagtcgtcagccataacatcgcgaatacgcataatagctgaagttccatacgtccaatgatagtttctgttccaaacagatttaccatacgctggcaaccctcttacagcagaagcagtcgccgttgaggaacgtccaatcatctcttgagtaacagcaccaccactacgtggttctgcctcgtcaatacaactggtcattgcagataaggtaagaccagctaaaaggacaccgtatattgatttattgatttttttcatattctttcgtatattttta Intra-Species Hit: Count: 1 Min: 1 Max: 782 Len: 782 Subject: pint_PI1939_PI1941|hypothetical protein:outer membrane receptor; ragA protein|POSITIVE:POSITIVE|[1896727,1897508]|782 HSP 1 e-value: 0.0 bit: 1509.0 Len: 782 Query Start:1 Query End:782 Subject Strand: POSITIVE Subject Start: 1 Subject End: 782 tccacatataaagacgagccttcaaaccataaacaacagccaagtttggcagtgtattattgctatttgaagctaaattcacaatatacttttcagcattgttcaagtctgactcgataaacttaaacatttcttcatgtgtagcacgaggattattacgtgaagctttttcgctcaaagtatcagtaacaataggacaagtaagattcttgacgttataaccttgctcatttgtacatgcagggtttacatcagttggtaagcactcatacatacgtgccatatcaagatagtttgcagcacgataagcatatcccgatccgaggtaacctaactgttcttttgatgccttttctgcgtcaacagcaccaattactaagtttgaagcaaaaacatagctataataatatgtatacacaaactgacctatcaaataagaaggcccaagagctatggttgcagcccaaggactaaactggttatagtcgtggtcttttactacatagtcgtcagccataacatcgcgaatacgcataatagctgaagttccatacgtccaatgatagtttctgttccaaacagatttaccatacgctggcaaccctcttacagcagaagcagtcgccgttgaggaacgtccaatcatctcttgagtaacagcaccaccactacgtggttctgcctcgtcaatacaactggtcattgcagataaggtaagaccagctaaaaggacaccgtatattgatttattgannnnnnncatattctttcgtatattttta tccacatataaagacgagccttcaaaccataaacaacagccaagtttggcagtgtattattgctatttgaagctaaattcacaatatacttttcagcattgttcaagtctgactcgataaacttaaacatttcttcatgtgtagcacgaggattattacgtgaagctttttcgctcaaagtatcagtaacaataggacaagtaagattcttgacgttataaccttgctcatttgtacatgcagggtttacatcagttggtaagcactcatacatacgtgccatatcaagatagtttgcagcacgataagcatatcccgatccgaggtaacctaactgttcttttgatgccttttctgcgtcaacagcaccaattactaagtttgaagcaaaaacatagctataataatatgtatacacaaactgacctatcaaataagaaggcccaagagctatggttgcagcccaaggactaaactggttatagtcgtggtcttttactacatagtcgtcagccataacatcgcgaatacgcataatagctgaagttccatacgtccaatgatagtttctgttccaaacagatttaccatacgctggcaaccctcttacagcagaagcagtcgccgttgaggaacgtccaatcatctcttgagtaacagcaccaccactacgtggttctgcctcgtcaatacaactggtcattgcagataaggtaagaccagctaaaaggacaccgtatattgatttattgatttttttcatattctttcgtatattttta Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UCCACAUAUAAAGACGAGCCUUCAAACCAUAAACAACAGCCAAGUUUGGCAGUGUAUUAUUGCUAUUUGAAGCUAAAUUCACAAUAUACUUUUCAGCAUUGUUCAAGUCUGACUCGAUAAACUUAAACAUUUCUUCAUGUGUAGCACGAGGAUUAUUACGUGAAGCUUUUUCGCUCAAAGUAUCAGUAACAAUAGGACAAGUAAGAUUCUUGACGUUAUAACCUUGCUCAUUUGUACAUGCAGGGUUUACAUCAGUUGGUAAGCACUCAUACAUACGUGCCAUAUCAAGAUAGUUUGCAGCACGAUAAGCAUAUCCCGAUCCGAGGUAACCUAACUGUUCUUUUGAUGCCUUUUCUGCGUCAACAGCACCAAUUACUAAGUUUGAAGCAAAAACAUAGCUAUAAUAAUAUGUAUACACAAACUGACCUAUCAAAUAAGAAGGCCCAAGAGCUAUGGUUGCAGCCCAAGGACUAAACUGGUUAUAGUCGUGGUCUUUUACUACAUAGUCGUCAGCCAUAACAUCGCGAAUACGCAUAAUAGCUGAAGUUCCAUACGUCCAAUGAUAGUUUCUGUUCCAAACAGAUUUACCAUACGCUGGCAACCCUCUUACAGCAGAAGCAGUCGCCGUUGAGGAACGUCCAAUCAUCUCUUGAGUAACAGCACCACCACUACGUGGUUCUGCCUCGUCAAUACAACUGGUCAUUGCAGAUAAGGUAAGACCAGCUAAAAGGACACCGUAUAUUGAUUUAUUGAUUUUUUUCAUAUUCUUUCGUAUAUUUUUA .....(((((((((..(((.(((((((.(((((((...((((....))))..))).)))).)...))))))))).......((((((((.(((((((..((((...(.(((((..((((..((((.......(((((((((...............))))))))).......(((((((.((((.............((((.......))))..((...((((((((............)))))))).)).....((((((.((((..........))))..)))))))))).)))).)))....))))..))))..(((((((.((((((.....(((((((((((((.......)))))))..((..(((.........)))..((((...(((((((.........(((....)))......(((.((......)))))......))))))).)))).))..))))))......))))))..))).))))...............))))))...))))..(((....)))......)))))))........((((.(((.(((..(((((.....))))).))).)))..(((((......((((((.......(((((.(((((((.((.....))...........(((...(((.(((((......))))).))).))).......)))).))).))))).......))))))))))).....))))...))))))))......(((......)))...))))).))))....... (-185.90) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAAAUAUACGAAAGAAUAUGAAAAAAAUCAAUAAAUCAAUAUACGGUGUCCUUUUAGCUGGUCUUACCUUAUCUGCAAUGACCAGUUGUAUUGACGAGGCAGAACCACGUAGUGGUGGUGCUGUUACUCAAGAGAUGAUUGGACGUUCCUCAACGGCGACUGCUUCUGCUGUAAGAGGGUUGCCAGCGUAUGGUAAAUCUGUUUGGAACAGAAACUAUCAUUGGACGUAUGGAACUUCAGCUAUUAUGCGUAUUCGCGAUGUUAUGGCUGACGACUAUGUAGUAAAAGACCACGACUAUAACCAGUUUAGUCCUUGGGCUGCAACCAUAGCUCUUGGGCCUUCUUAUUUGAUAGGUCAGUUUGUGUAUACAUAUUAUUAUAGCUAUGUUUUUGCUUCAAACUUAGUAAUUGGUGCUGUUGACGCAGAAAAGGCAUCAAAAGAACAGUUAGGUUACCUCGGAUCGGGAUAUGCUUAUCGUGCUGCAAACUAUCUUGAUAUGGCACGUAUGUAUGAGUGCUUACCAACUGAUGUAAACCCUGCAUGUACAAAUGAGCAAGGUUAUAACGUCAAGAAUCUUACUUGUCCUAUUGUUACUGAUACUUUGAGCGAAAAAGCUUCACGUAAUAAUCCUCGUGCUACACAUGAAGAAAUGUUUAAGUUUAUCGAGUCAGACUUGAACAAUGCUGAAAAGUAUAUUGUGAAUUUAGCUUCAAAUAGCAAUAAUACACUGCCAAACUUGGCUGUUGUUUAUGGUUUGAAGGCUCGUCUUUAUAUGUGGA .....(((((..(((((.........((((((..............((((.((((((.((.((((((...(((.(((((....(((((..(.((((.(..((((.(((((......))))).))))..)))))...)..)))))..(((((.....((((((..(((((......))))))))))).((((((((((..(((((.....)))))...))))))...))))..))))).((((((((..((((....)))).....))))))))......)))))))))))))).((((....(((((((.((((....))))((((.(((((((....(((((((......)).)))))....((((....)))).......)))))))...))))............)))))))...))))..))..)))))))))).(((.((((((((((((....(((.(((.(((((((((.(((.((.........((((.((.(((((((...(.(..((((.........((((((.((((.(((.(((....))).))).))))...)))))).......))))..).).(((((((((((..((((.......))))..))).))))))))...)))))))...)).))))..(((((((((((........)))))))))))..))))).))))))))).))).....(((......))).........)))...)))))))))))).))).)))))).........))))).)))))... (-216.76) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 377 700 659 201 157 pint:PI0754|5end_possible_outer_membrane_receptor_683771..684001_POSITIVE 368 690 641 131 90 pint:PI1575|5end_LemA_protein_1501143..1501373_POSITIVE 368 707 662 90 36 pint:PI0259|5end_conserved_protein_found_in_conjugation,_TraI_252355..252585_POSITIVE 354 687 642 223 178 pint:PI2053|5end_conserved_hypothetical_protein;_possible_outer_membrane_receptor_protein_2010673..2010903_POSITIVE 346 479 434 214 161 pint:PI1528|5end_hypothetical_protein_1449685..1449915_POSITIVE 342 644 611 56 12 pint:PI1865|5end_chromate_transport_protein_1810935..1811165_POSITIVE 341 638 594 220 166 pint:PI2169|5end_hypothetical_protein_2111706..2111936_POSITIVE 341 638 594 104 50 pint:PI2167|5end_hypothetical_protein_2111590..2111820_POSITIVE 339 649 601 94 32 pint:PI0113|5end_arginyl-tRNA_synthetase_108371..108601_POSITIVE 336 486 441 134 83 pint:PI0123|5end_outer_membrane_protein,_ompH_family_113906..114136_POSITIVE 329 470 422 141 84 pint:PI2006|5end_potassium_uptake_system_protein_1964480..1964710_POSITIVE 329 638 592 145 98 pint:PI0062|5end_endopeptidase_60963..61193_POSITIVE 328 639 594 52 1 pint:PI0096|5end_glycerol-3-phosphate_cytidylyltransferase_91885..92115_POSITIVE 324 640 591 89 16 pint:PI0139|5end_pyridoxine_biosynthesis_protein_131835..132065_POSITIVE 322 637 594 225 168 pint:PI1486|5end_alginate_O-acetylation_protein_1405507..1405737_POSITIVE 321 660 614 173 117 pint:PI0933|5end_hypothetical_protein_865700..865930_POSITIVE 320 637 594 83 26 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 319 642 602 38 1 pint:PI0964|5end_conserved_hypothetical_protein_893238..893468_POSITIVE 319 640 591 171 100 pint:PI0701|5end_hypothetical_protein_638356..638586_POSITIVE 318 633 591 126 71 pint:PI0539|5end_hypothetical_protein_493406..493636_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 368 690 641 134 93 pint:PI1574|3end_conserved_hypothetical_protein_1501226..1501376_POSITIVE 342 644 611 50 6 pint:PI1864|3end_chromate_transport_protein_1811009..1811159_POSITIVE 332 464 430 54 20 pint:PI0570|3end_exsB_protein;_possible_aluminum_resistance_protein_515395..515545_POSITIVE 327 637 593 125 77 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 320 627 584 149 92 pint:PI0023|3end_internalin-related_protein_28070..28220_POSITIVE 319 640 591 148 77 pint:PI0700|3end_UDP-glucose_4-epimerase_638413..638563_POSITIVE 312 266 222 85 20 pint:PI0999|3end_hypothetical_protein_922812..922962_POSITIVE 311 638 591 103 35 pint:PI0249|3end_conserved_hypothetical_protein_247026..247176_POSITIVE 310 629 584 150 95 pint:PI0936|3end_conserved_hypothetical_protein_869464..869614_POSITIVE 309 630 586 64 2 pint:PI1734|3end_possible_carboxyl-terminal_protease-related_protein_1653829..1653979_POSITIVE 307 680 631 136 93 pint:PI2062|3end_type_I_restriction-modification_system_2024008..2024158_POSITIVE 305 304 263 64 13 pint:PI1358|3end_phospho-N-acetylmuramoyl-pentapeptide-transferase__1275516..1275666_POSITIVE 303 630 588 141 75 pint:PI0114|3end_hypothetical_protein_108527..108677_POSITIVE 299 700 652 145 93 pint:PI1730|3end_hypothetical_protein_1650367..1650517_POSITIVE 299 638 600 140 105 pint:PI1606|3end_conserved_hypothetical_protein_1535565..1535715_POSITIVE 295 634 595 62 24 pint:PI1538|3end_conserved_hypothetical_protein_1459862..1460012_POSITIVE 291 637 596 116 77 pint:PI0998|3end_possible_flavin_reductase_domain_protein_923336..923486_POSITIVE 290 649 605 65 11 pint:PI0838|3end_DNA_replication_and_repair_protein_773927..774077_POSITIVE 287 629 594 80 46 pint:PI0141|3end_glutamine_amidotransferase_involved_in_pyridoxine_biosynthesis_133308..133458_POSITIVE 287 486 444 47 1 pint:PI0122|3end_outer_membrane_protein,_ompH_family_113899..114049_POSITIVE