Origin IGS: acatttttaagtttttattattatctaattctaatttttgcttcacaatagtttggtacgcccatatctaattattcacataataaagcctaccttatatattgaacacttcgctaagtattggttatatgagtctatgcgtgcaaagataggtataaaatacataccaacaaaatttttcttccattttattagcttttgcaaagattttatttcaaaaataatatataaagaatgatttgtaacaatttaaaacataccatatcataaaggaagtaacgacaagtaataacatattgacaagagaggagctaaaaggagttgctttttgtttatagatacactaagatgctgttaatagcaactaaacttgccccaatacaggcaaacatatctatcaattcaacacaattggtgtacctataaaacttttaattttacaaaaagggcgttgaggtacattttgattaccgaaggtatttggtgggattttccatctaactttataaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaaaccattggtaatgaaagggttaaacaacagaaaggcttgcgaaaaatatttacatctcgtttgtctttttttgttaatataataaggcgtatttatactttagtttttagccgccagcaataatatagaaagcaaaaagcgtgtttacccaatgggcaaacacgcttttctcgtatgttcagcctaatgtcttaggcaaatgtatgtgtta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taacacatacatttgcctaagacattaggctgaacatacgagaaaagcgtgtttgcccattgggtaaacacgctttttgctttctatattattgctggcggctaaaaactaaagtataaatacgccttattatattaacaaaaaaagacaaacgagatgtaaatatttttcgcaagcctttctgttgtttaaccctttcattaccaatggtttacaaagcctattgttttacgttctaaaagcgtaggttttgcaaggtaaaagcggctcttttggcgtgcaaaagttacgctttcgcaacgccaaagcgcagttatcgctttttaacagaattatctttataaagttagatggaaaatcccaccaaataccttcggtaatcaaaatgtacctcaacgccctttttgtaaaattaaaagttttataggtacaccaattgtgttgaattgatagatatgtttgcctgtattggggcaagtttagttgctattaacagcatcttagtgtatctataaacaaaaagcaactccttttagctcctctcttgtcaatatgttattacttgtcgttacttcctttatgatatggtatgttttaaattgttacaaatcattctttatatattatttttgaaataaaatctttgcaaaagctaataaaatggaagaaaaattttgttggtatgtattttatacctatctttgcacgcatagactcatataaccaatacttagcgaagtgttcaatatataaggtaggctttattatgtgaataattagatatgggcgtaccaaactattgtgaagcaaaaattagaattagataataataaaaacttaaaaatgt Mask Tandem Repeat Region ================================================ acatttttaagtttttattattatctaattctaatttttgcttcacaatagtttggtacgcccatatctaattattcacataataaagcctaccttatatattgaacacttcgctaagtattggttatatgagtctatgcgtgcaaagataggtataaaatacataccaacaaaatttttcttccattttattagcttttgcaaagattttatttcaaaaataatatataaagaatgatttgtaacaatttaaaacataccatatcataaaggaagtaacgacaagtaataacatattgacaagagaggagctaaaaggagttgctttttgtttatagatacactaagatgctgttaatagcaactaaacttgccccaatacaggcaaacatatctatcaattcaacacaattggtgtacctataaaacttttaattttacaaaaagggcgttgaggtacattttgattaccgaaggtatttggtgggattttccatctaactttataaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaaaccattggtaatgaaagggttaaacaacagaaaggcttgcgaaaaatatttacatctcgtttgtctttttttgttaatataataaggcgtatttatactttagtttttagccgccagcaataatatagaaagcaaaaagcgtgtttacccaatgggcaaacacgcttttctcgtatgttcagcctaatgtcttaggcaaatgtatgtgtta Find is-nt database================================================ Query_seq: PI1937:PI1938|PI1937:PI1938:hypothetical protein:hypothetical protein:->->:1891147..1891993 847 acatttttaagtttttattattatctaattctaatttttgcttcacaatagtttggtacgcccatatctaattattcacataataaagcctaccttatatattgaacacttcgctaagtattggttatatgagtctatgcgtgcaaagataggtataaaatacataccaacaaaatttttcttccattttattagcttttgcaaagattttatttcaaaaataatatataaagaatgatttgtaacaatttaaaacataccatatcataaaggaagtaacgacaagtaataacatattgacaagagaggagctaaaaggagttgctttttgtttatagatacactaagatgctgttaatagcaactaaacttgccccaatacaggcaaacatatctatcaattcaacacaattggtgtacctataaaacttttaattttacaaaaagggcgttgaggtacattttgattaccgaaggtatttggtgggattttccatctaactttataaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaaaccattggtaatgaaagggttaaacaacagaaaggcttgcgaaaaatatttacatctcgtttgtctttttttgttaatataataaggcgtatttatactttagtttttagccgccagcaataatatagaaagcaaaaagcgtgtttacccaatgggcaaacacgcttttctcgtatgttcagcctaatgtcttaggcaaatgtatgtgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1937:PI1938|PI1937:PI1938:hypothetical protein:hypothetical protein:->->:1891147..1891993 847 acatttttaagtttttattattatctaattctaatttttgcttcacaatagtttggtacgcccatatctaattattcacataataaagcctaccttatatattgaacacttcgctaagtattggttatatgagtctatgcgtgcaaagataggtataaaatacataccaacaaaatttttcttccattttattagcttttgcaaagattttatttcaaaaataatatataaagaatgatttgtaacaatttaaaacataccatatcataaaggaagtaacgacaagtaataacatattgacaagagaggagctaaaaggagttgctttttgtttatagatacactaagatgctgttaatagcaactaaacttgccccaatacaggcaaacatatctatcaattcaacacaattggtgtacctataaaacttttaattttacaaaaagggcgttgaggtacattttgattaccgaaggtatttggtgggattttccatctaactttataaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaaaccattggtaatgaaagggttaaacaacagaaaggcttgcgaaaaatatttacatctcgtttgtctttttttgttaatataataaggcgtatttatactttagtttttagccgccagcaataatatagaaagcaaaaagcgtgtttacccaatgggcaaacacgcttttctcgtatgttcagcctaatgtcttaggcaaatgtatgtgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1937:PI1938|PI1937:PI1938:hypothetical protein:hypothetical protein:->->:1891147..1891993 847 acatttttaagtttttattattatctaattctaatttttgcttcacaatagtttggtacgcccatatctaattattcacataataaagcctaccttatatattgaacacttcgctaagtattggttatatgagtctatgcgtgcaaagataggtataaaatacataccaacaaaatttttcttccattttattagcttttgcaaagattttatttcaaaaataatatataaagaatgatttgtaacaatttaaaacataccatatcataaaggaagtaacgacaagtaataacatattgacaagagaggagctaaaaggagttgctttttgtttatagatacactaagatgctgttaatagcaactaaacttgccccaatacaggcaaacatatctatcaattcaacacaattggtgtacctataaaacttttaattttacaaaaagggcgttgaggtacattttgattaccgaaggtatttggtgggattttccatctaactttataaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaaaccattggtaatgaaagggttaaacaacagaaaggcttgcgaaaaatatttacatctcgtttgtctttttttgttaatataataaggcgtatttatactttagtttttagccgccagcaataatatagaaagcaaaaagcgtgtttacccaatgggcaaacacgcttttctcgtatgttcagcctaatgtcttaggcaaatgtatgtgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 acatttttaagtttttattattatctaattctaatttttgcttcacaatagtttggtacgcccatatctaattattcacataataaagcctaccttatatattgaacacttcgctaagtattggttatatgagtctatgcgtgcaaagataggtataaaatacataccaacaaaatttttcttccattttattagcttttgcaaagattttatttcaaaaataatatataaagaatgatttgtaacaatttaaaacataccatatcataaaggaagtaacgacaagtaataacatattgacaagagaggagctaaaaggagttgctttttgtttatagatacactaagatgctgttaatagcaactaaacttgccccaatacaggcaaacatatctatcaattcaacacaattggtgtacctataaaacttttaattttacaaaaagggcgttgaggtacattttgattaccgaaggtatttggtgggattttccatctaactttataaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaaaccattggtaatgaaagggttaaacaacagaaaggcttgcgaaaaatatttacatctcgtttgtctttttttgttaatataataaggcgtatttatactttagtttttagccgccagcaataatatagaaagcaaaaagcgtgtttacccaatgggcaaacacgcttttctcgtatgttcagcctaatgtcttaggcaaatgtatgtgtta Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 38 End: 235 ..................................... M L H N S L V R P Y L I I H I I K P T L Y I E H F A K Y W L Y E S M R A K I G I K Y I P T K F F F H F I S F C K D F I S .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: + Start: 322 End: 423 ................................................................................................................................................................................................................................................................................................................................. M L F V Y R Y T K M L L I A T K L A P I Q A N I S I N S T Q L V Y L ........................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 371 End: 616 .................................................................................................................................................................................................................................................................................................................................................................................. M P Q Y R Q T Y L S I Q H N W C T Y K T F N F T K R A L R Y I L I T E G I W W D F P S N F I K I I L L K S D N C A L A L ....................................................................................................................................................................................................................................... Protein_Len: 38 Strand: + Start: 531 End: 644 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M T A L W R C E S V T F A R Q K S R F Y L A K P T L L E R K T I G F V N H W ........................................................................................................................................................................................................... Protein_Len: 39 Strand: + Start: 640 End: 756 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M G N E R V K Q Q K G L R K I F T S R L S F F V N I I R R I Y T L V F S R Q Q ........................................................................................... Protein_Len: 31 Strand: - Start: 732 End: 824 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... V K T K L R W C Y Y L F C F A H K G L P C V R K E R I N L R M ....................... Protein_Len: 39 Strand: - Start: 612 End: 728 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... F T F C Y A K Y V M P L S L T L C C F P K R F I N V D R K D K K T L I I L R M ....................................................................................................................... Protein_Len: 43 Strand: - Start: 604 End: 732 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... A K L V Y F L L S Q L G N T I F P N F L L F A Q S F Y K C R T Q R K K N I Y Y P T N M ................................................................................................................... Protein_Len: 58 Strand: - Start: 424 End: 597 ....................................................................................................................................................................................................................................................................................................................................................................................................................................... L V K L K V F L A N L Y M K I V S P I Q H S K G D L K I F I I R N F L S L Q A K A N R F R L K Q V G F S G S K G Q M .......................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: - Start: 401 End: 490 ................................................................................................................................................................................................................................................................................................................................................................................................................ N L V I P T G I F S K I K C F P R Q P V N Q N G F T N P P M ..................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 41 Strand: - Start: 218 End: 340 ......................................................................................................................................................................................................................... F Y Y I F F S K Y C N L V Y W I M F S T V V L L L M N V L S S S F P T A K Q K Y M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 57 Strand: - Start: 79 End: 249 .............................................................................. M I F G V K Y I S C K A L Y Q N Y S D I R A F I P I F Y M G V F N K K W K I L K Q L S K I E F I I Y L S H N T V M ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... acatttttaagtttttattattatctaattctaatttttgcttcacaatagtttggtacgcccatatctaattattcacataataaagcctaccttatatattgaacacttcgctaagtattggttatatgagtctatgcgtgcaaagataggtataaaatacataccaacaaaatttttcttccattttattagcttttgcaaagattttatttcaaaaataatatataaagaatgatttgtaacaatttaaaacataccatatcataaaggaagtaacgacaagtaataacatattgacaagagaggagctaaaaggagttgctttttgtttatagatacactaagatgctgttaatagcaactaaacttgccccaatacaggcaaacatatctatcaattcaacacaattggtgtacctataaaacttttaattttacaaaaagggcgttgaggtacattttgattaccgaaggtatttggtgggattttccatctaactttataaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaaaccattggtaatgaaagggttaaacaacagaaaggcttgcgaaaaatatttacatctcgtttgtctttttttgttaatataataaggcgtatttatactttagtttttagccgccagcaataatatagaaagcaaaaagcgtgtttacccaatgggcaaacacgcttttctcgtatgttcagcctaatgtcttaggcaaatgtatgtgtta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 83 Start: 74 End: 103 .........................................................................ATTCACATAATAAAGCCTACCTTATATATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ PromScan Matrix: RpoD-17 Strand: + Score: 83 Start: 239 End: 268 ..............................................................................................................................................................................................................................................TTTGTAACAATTTAAAACATACCATATCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 264 End: 293 .......................................................................................................................................................................................................................................................................GTTATTACTTGTCGTTACTTCCTTTATGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 706 End: 735 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTAATATAATAAGGCGTATTTATACT................................................................................................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ acatttttaagtttttattattatctaattctaatttttgcttcacaatagtttggtacgcccatatctaattattcacataataaagcctaccttatatattgaacacttcgctaagtattggttatatgagtctatgcgtgcaaagataggtataaaatacataccaacaaaatttttcttccattttattagcttttgcaaagattttatttcaaaaataatatataaagaatgatttgtaacaatttaaaacataccatatcataaaggaagtaacgacaagtaataacatattgacaagagaggagctaaaaggagttgctttttgtttatagatacactaagatgctgttaatagcaactaaacttgccccaatacaggcaaacatatctatcaattcaacacaattggtgtacctataaaacttttaattttacaaaaagggcgttgaggtacattttgattaccgaaggtatttggtgggattttccatctaactttataaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaaaccattggtaatgaaagggttaaacaacagaaaggcttgcgaaaaatatttacatctcgtttgtctttttttgttaatataataaggcgtatttatactttagtttttagccgccagcaataatatagaaagcaaaaagcgtgtttacccaatgggcaaacacgcttttctcgtatgttcagcctaatgtcttaggcaaatgtatgtgtta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 43 HP_score: -2.4 Tail_Score: -3.03007 Start: 361 End: 374 Full_Region: tttgcctgtattggg gcaa gtttag ttgc tattaacagcatctt ........................................................................................................................................................................................................................................................................................................................................................................gcaagtttagttgc......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 64 HP_score: -4.8 Tail_Score: -4.27316 Start: 534 End: 584 Full_Region: TGTTAAAAAGCGATA ACTGCGCTTTGGCGTTGCGAAAG CGTAA CTTTTGCACGCCAAAAGAGCCGC TTTTACCTTGCAAAA .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCGCTTTGGCGTTGCGAAAGCGTAACTTTTGCACGCCAAAAGAGCCGC....................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 70 HP_score: -8.3 Tail_Score: -3.16068 Start: 535 End: 583 Full_Region: GTTAAAAAGCGATAA CTGCGCTTTGGCGTTGCGAAAG CGTAA CTTTTGCACGCCAAAAGAGCCG CTTTTACCTTGCAAA ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCTTTGGCGTTGCGAAAGCGTAACTTTTGCACGCCAAAAGAGCCG........................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 74 HP_score: -9.7 Tail_Score: -2.74605 Start: 538 End: 558 Full_Region: AAAAAGCGATAACTG CGCTTTGGC GTT GCGAAAGCG TAACTTTTGCACGCC .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTTGGCGTTGCGAAAGCG................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 84 HP_score: -9.9 Tail_Score: -3.53012 Start: 556 End: 606 Full_Region: ttttacgttctaaaa gcgtaggttttgcaaggtaaaag cggct cttttggcgtgcaaaagttacgc tttcgcaacgccaaa ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcgtaggttttgcaaggtaaaagcggctcttttggcgtgcaaaagttacgc................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 64 HP_score: -5.5 Tail_Score: -4.09685 Start: 556 End: 606 Full_Region: TTTGGCGTTGCGAAA GCGTAACTTTTGCACGCCAAAAG AGCCG CTTTTACCTTGCAAAACCTACGC TTTTAGAACGTAAAA ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTAACTTTTGCACGCCAAAAGAGCCGCTTTTACCTTGCAAAACCTACGC................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 100 HP_score: -18.5 Tail_Score: -4.28067 Start: 768 End: 808 Full_Region: ttaggctgaacatac gagaaaagcgtgtttgccc att gggtaaacacgctttttgc tttctatattattgc ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gagaaaagcgtgtttgcccattgggtaaacacgctttttgc....................................... TransTerm Strand: - Conf: 100 HP_score: -17.4 Tail_Score: -5.07011 Start: 775 End: 801 Full_Region: gaacatacgagaaaa gcgtgtttgccc att gggtaaacacgc tttttgctttctata ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcgtgtttgcccattgggtaaacacgc.............................................. Find igs database================================================ Query_seq: PI1937:PI1938|PI1937:PI1938:hypothetical protein:hypothetical protein:->->:1891147..1891993 847 acatttttaagtttttattattatctaattctaatttttgcttcacaatagtttggtacgcccatatctaattattcacataataaagcctaccttatatattgaacacttcgctaagtattggttatatgagtctatgcgtgcaaagataggtataaaatacataccaacaaaatttttcttccattttattagcttttgcaaagattttatttcaaaaataatatataaagaatgatttgtaacaatttaaaacataccatatcataaaggaagtaacgacaagtaataacatattgacaagagaggagctaaaaggagttgctttttgtttatagatacactaagatgctgttaatagcaactaaacttgccccaatacaggcaaacatatctatcaattcaacacaattggtgtacctataaaacttttaattttacaaaaagggcgttgaggtacattttgattaccgaaggtatttggtgggattttccatctaactttataaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaaaccattggtaatgaaagggttaaacaacagaaaggcttgcgaaaaatatttacatctcgtttgtctttttttgttaatataataaggcgtatttatactttagtttttagccgccagcaataatatagaaagcaaaaagcgtgtttacccaatgggcaaacacgcttttctcgtatgttcagcctaatgtcttaggcaaatgtatgtgtta Intra-Species Hit: Count: 29 Min: 1 Max: 847 Len: 847 Subject: pint_PI1937_PI1938|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1891147,1891993]|847 HSP 1 e-value: 0.0 bit: 1637.0 Len: 847 Query Start:1 Query End:847 Subject Strand: POSITIVE Subject Start: 1 Subject End: 847 acatttttaagtttttattattatctaattctaatttttgcttcacaatagtttggtacgcccatatctaattattcacataataaagcctaccttatatattgaacacttcgctaagtattggttatatgagtctatgcgtgcaaagataggtataaaatacataccaacaaaatttttcttccattttattagcttttgcaaagattttatttcaaaaataatatataaagaatgatttgtaacaatttaaaacataccatatcataaaggaagtaacgacaagtaataacatattgacaagagaggagctaaaaggagttgctttttgtttatagatacactaagatgctgttaatagcaactaaacttgccccaatacaggcaaacatatctatcaattcaacacaattggtgtacctataaaacttttaattttacaaaaagggcgttgaggtacattttgattaccgaaggtatttggtgggattttccatctaactttataaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaaaccattggtaatgaaagggttaaacaacagaaaggcttgcgaaaaatatttacatctcgtttgtcnnnnnnngttaatataataaggcgtatttatactttagtttttagccgccagcaataatatagaaagcaaaaagcgtgtttacccaatgggcaaacacgcttttctcgtatgttcagcctaatgtcttaggcaaatgtatgtgtta acatttttaagtttttattattatctaattctaatttttgcttcacaatagtttggtacgcccatatctaattattcacataataaagcctaccttatatattgaacacttcgctaagtattggttatatgagtctatgcgtgcaaagataggtataaaatacataccaacaaaatttttcttccattttattagcttttgcaaagattttatttcaaaaataatatataaagaatgatttgtaacaatttaaaacataccatatcataaaggaagtaacgacaagtaataacatattgacaagagaggagctaaaaggagttgctttttgtttatagatacactaagatgctgttaatagcaactaaacttgccccaatacaggcaaacatatctatcaattcaacacaattggtgtacctataaaacttttaattttacaaaaagggcgttgaggtacattttgattaccgaaggtatttggtgggattttccatctaactttataaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaaaccattggtaatgaaagggttaaacaacagaaaggcttgcgaaaaatatttacatctcgtttgtctttttttgttaatataataaggcgtatttatactttagtttttagccgccagcaataatatagaaagcaaaaagcgtgtttacccaatgggcaaacacgcttttctcgtatgttcagcctaatgtcttaggcaaatgtatgtgtta Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 5.0E-32 bit: 141.0 Len: 127 Query Start:502 Query End:628 Subject Strand: NEGATIVE Subject Start: 183 Subject End: 309 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctttataaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaatagg........................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctttgtaaagataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaatagg........................................................................................................................................................................................................................... Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 4.0E-29 bit: 131.0 Len: 122 Query Start:507 Query End:628 Subject Strand: POSITIVE Subject Start: 146 Subject End: 267 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaatagg........................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaatagg........................................................................................................................................................................................................................... Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 2.0E-25 bit: 119.0 Len: 130 Query Start:507 Query End:636 Subject Strand: POSITIVE Subject Start: 206 Subject End: 334 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaact-tttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaa................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcg--gctgtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaa................................................................................................................................................................................................................... Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 3.0E-24 bit: 115.0 Len: 118 Query Start:507 Query End:624 Subject Strand: POSITIVE Subject Start: 231 Subject End: 348 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaa............................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................................................................................... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 1.0E-23 bit: 113.0 Len: 189 Query Start:502 Query End:690 Subject Strand: POSITIVE Subject Start: 59 Subject End: 247 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctttataaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaaaccattggtaatgaaagggttaaacaacagaaaggcttgcgaaaaatatttaca............................................................................................................................................................. .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttaca............................................................................................................................................................. Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 6.0E-22 bit: 107.0 Len: 130 Query Start:507 Query End:636 Subject Strand: NEGATIVE Subject Start: 148 Subject End: 277 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaa................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgtaaaacaataggttttgtaa................................................................................................................................................................................................................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 6.0E-22 bit: 107.0 Len: 118 Query Start:507 Query End:624 Subject Strand: NEGATIVE Subject Start: 199 Subject End: 316 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaa............................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattcccttaaaaaaggataactgcgctttggcattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaa............................................................................................................................................................................................................................... Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 4.0E-20 bit: 101.0 Len: 115 Query Start:519 Query End:633 Subject Strand: NEGATIVE Subject Start: 346 Subject End: 460 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttg...................................................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgttaaaaagtgataactgcgctttgacattgcgaaagcgtaggttttgcgatgcaaaagcgccacttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttg...................................................................................................................................................................................................................... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 2.0E-19 bit: 99.6 Len: 130 Query Start:507 Query End:636 Subject Strand: POSITIVE Subject Start: 196 Subject End: 325 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaa................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataatttcgttaaaaagtgataactgcactttgacgttgcgaaagcggctgttttacgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttaggacgcaaaacaatagattttgtaa................................................................................................................................................................................................................... Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 2.0E-19 bit: 99.6 Len: 130 Query Start:507 Query End:636 Subject Strand: POSITIVE Subject Start: 173 Subject End: 302 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaa................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 2.0E-19 bit: 99.6 Len: 138 Query Start:499 Query End:636 Subject Strand: POSITIVE Subject Start: 476 Subject End: 613 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taactttataaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaa................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taactttgtaaagataattctgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaataggttttgtaa................................................................................................................................................................................................................... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 1.0E-17 bit: 93.7 Len: 127 Query Start:507 Query End:633 Subject Strand: NEGATIVE Subject Start: 96 Subject End: 222 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttg...................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgttaaaaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg...................................................................................................................................................................................................................... Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 4.0E-17 bit: 91.7 Len: 122 Query Start:507 Query End:628 Subject Strand: POSITIVE Subject Start: 116 Subject End: 237 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaatagg........................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgttaaaaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaatagg........................................................................................................................................................................................................................... Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 4.0E-17 bit: 91.7 Len: 130 Query Start:507 Query End:636 Subject Strand: POSITIVE Subject Start: 84 Subject End: 213 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaa................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataatttcgttgaaaagtggtaattgcgctttggcattgcgaaagcggctgttttgcgatgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaa................................................................................................................................................................................................................... Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 4.0E-17 bit: 91.7 Len: 122 Query Start:507 Query End:628 Subject Strand: NEGATIVE Subject Start: 183 Subject End: 304 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaatagg........................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattttattaaaaagtggcaattgcgttttgacattgcaaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcgaaacaatagg........................................................................................................................................................................................................................... Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 4.0E-17 bit: 91.7 Len: 130 Query Start:507 Query End:636 Subject Strand: POSITIVE Subject Start: 55 Subject End: 184 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaa................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................... Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 2.0E-15 bit: 85.7 Len: 127 Query Start:507 Query End:633 Subject Strand: POSITIVE Subject Start: 149 Subject End: 275 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttg...................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattcgttgaaaaaatgataatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttg...................................................................................................................................................................................................................... Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 9.0E-15 bit: 83.8 Len: 138 Query Start:499 Query End:636 Subject Strand: POSITIVE Subject Start: 145 Subject End: 282 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taactttataaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaa................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taactttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................... Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 9.0E-15 bit: 83.8 Len: 130 Query Start:507 Query End:636 Subject Strand: POSITIVE Subject Start: 192 Subject End: 321 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaa................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaa................................................................................................................................................................................................................... Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 9.0E-15 bit: 83.8 Len: 122 Query Start:507 Query End:628 Subject Strand: NEGATIVE Subject Start: 115 Subject End: 236 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaatagg........................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaaaataattccgttaaaaagcgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaatagg........................................................................................................................................................................................................................... Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 9.0E-15 bit: 83.8 Len: 122 Query Start:507 Query End:628 Subject Strand: NEGATIVE Subject Start: 237 Subject End: 357 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaatagg........................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattcattgaaaaa-cgataatttcgatttggcattgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacacttttggaatgcaaaacaatagg........................................................................................................................................................................................................................... Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 6.0E-13 bit: 77.8 Len: 127 Query Start:502 Query End:628 Subject Strand: POSITIVE Subject Start: 309 Subject End: 435 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctttataaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaatagg........................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ctttgtaaagataatttctttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaatagg........................................................................................................................................................................................................................... Subject: pint_PI1728_PI1729|ATP-dependent Clp protease, proteolytic subunit:FKBP-type peptidyl-prolyl cis-trans isomerase, trigger factor|POSITIVE:POSITIVE|[1647719,1648555]|837 HSP 1 e-value: 6.0E-10 bit: 67.9 Len: 150 Query Start:541 Query End:690 Subject Strand: NEGATIVE Subject Start: 358 Subject End: 507 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaaaccattggtaatgaaagggttaaacaacagaaaggcttgcgaaaaatatttaca............................................................................................................................................................. ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tttgacgttgcaaaagcgtaggttttgcaaggcaaaagagccgcttttaccgtgcaaaagcggctcttttacaatgcgaaacaataggttttataacacactgataataaaacggttacacaacagttatgcttgtaaaaaatatttaca............................................................................................................................................................. Subject: pint_PI0652_PI0653|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[595853,596185]|333 HSP 1 e-value: 6.0E-10 bit: 67.9 Len: 130 Query Start:507 Query End:636 Subject Strand: POSITIVE Subject Start: 152 Subject End: 281 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaa................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgaagaaaaacgataatttcgatttggcactgcgaaagtgtaggttttaccgtccaaaagcggctcttttgccttgcaaaacctacgcttttggaatgcaaaacaataggttttgtaa................................................................................................................................................................................................................... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 6.0E-10 bit: 67.9 Len: 130 Query Start:507 Query End:636 Subject Strand: POSITIVE Subject Start: 171 Subject End: 300 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaa................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctcttaaaaattgataactgcgttttgacattgcgaaagcggctgttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................... Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 2.0E-9 bit: 65.9 Len: 113 Query Start:521 Query End:633 Subject Strand: POSITIVE Subject Start: 120 Subject End: 232 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttg...................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg...................................................................................................................................................................................................................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 1.0E-7 bit: 60.0 Len: 130 Query Start:507 Query End:636 Subject Strand: POSITIVE Subject Start: 151 Subject End: 280 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaa................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................... Subject: pint_PI1324_PI1325|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1243086,1243554]|469 HSP 1 e-value: 1.0E-7 bit: 60.0 Len: 130 Query Start:507 Query End:636 Subject Strand: NEGATIVE Subject Start: 258 Subject End: 387 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaa................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaaaataattctgttaaaaagtgataactgcactttggcattgtaaaagcggctgttttgcatcgcaaaacagccgcttttggctggtaaaagagccgcttttacaatgtaaaacaataggttttgtaa................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACAUUUUUAAGUUUUUAUUAUUAUCUAAUUCUAAUUUUUGCUUCACAAUAGUUUGGUACGCCCAUAUCUAAUUAUUCACAUAAUAAAGCCUACCUUAUAUAUUGAACACUUCGCUAAGUAUUGGUUAUAUGAGUCUAUGCGUGCAAAGAUAGGUAUAAAAUACAUACCAACAAAAUUUUUCUUCCAUUUUAUUAGCUUUUGCAAAGAUUUUAUUUCAAAAAUAAUAUAUAAAGAAUGAUUUGUAACAAUUUAAAACAUACCAUAUCAUAAAGGAAGUAACGACAAGUAAUAACAUAUUGACAAGAGAGGAGCUAAAAGGAGUUGCUUUUUGUUUAUAGAUACACUAAGAUGCUGUUAAUAGCAACUAAACUUGCCCCAAUACAGGCAAACAUAUCUAUCAAUUCAACACAAUUGGUGUACCUAUAAAACUUUUAAUUUUACAAAAAGGGCGUUGAGGUACAUUUUGAUUACCGAAGGUAUUUGGUGGGAUUUUCCAUCUAACUUUAUAAAGAUAAUUCUGUUAAAAAGCGAUAACUGCGCUUUGGCGUUGCGAAAGCGUAACUUUUGCACGCCAAAAGAGCCGCUUUUACCUUGCAAAACCUACGCUUUUAGAACGUAAAACAAUAGGCUUUGUAAACCAUUGGUAAUGAAAGGGUUAAACAACAGAAAGGCUUGCGAAAAAUAUUUACAUCUCGUUUGUCUUUUUUUGUUAAUAUAAUAAGGCGUAUUUAUACUUUAGUUUUUAGCCGCCAGCAAUAAUAUAGAAAGCAAAAAGCGUGUUUACCCAAUGGGCAAACACGCUUUUCUCGUAUGUUCAGCCUAAUGUCUUAGGCAAAUGUAUGUGUUA ..........((((((..((((((.............(((((((...........((((((.........(((((....))))).........((((((((.(.((.((((....)))).)).).)))))))).....))))))...(((((((((.............(((((.((.(((((......(((((..(((((.(((.......)))))))).)))))....))))).))))))).............))))).))))......)))))))......((......(((((((((((((((((....(((.(((.((((((((((((((((.((((((((..(((((....))))).......(((((........))))).......................)))))))).)))))).............))))))))...((((....((.((((.((((((((.(((....((((((....)))))).....((((((((.....((((((..((((((.......)))))).(((((..(((((((((..(((((((.(..(((((.....)))))..).)))))))..)))))))))..))))).....))))))))))))))))).)))))))).)))).))....))))........................)).))).))).))))))))))))))))).....((((.......((....)).......)))).)).))))))..)))))).((((((((((((.(((...))).))))))))))))(.((((((((..((((((....)))))).)))))))).)... (-195.52) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAACACAUACAUUUGCCUAAGACAUUAGGCUGAACAUACGAGAAAAGCGUGUUUGCCCAUUGGGUAAACACGCUUUUUGCUUUCUAUAUUAUUGCUGGCGGCUAAAAACUAAAGUAUAAAUACGCCUUAUUAUAUUAACAAAAAAAGACAAACGAGAUGUAAAUAUUUUUCGCAAGCCUUUCUGUUGUUUAACCCUUUCAUUACCAAUGGUUUACAAAGCCUAUUGUUUUACGUUCUAAAAGCGUAGGUUUUGCAAGGUAAAAGCGGCUCUUUUGGCGUGCAAAAGUUACGCUUUCGCAACGCCAAAGCGCAGUUAUCGCUUUUUAACAGAAUUAUCUUUAUAAAGUUAGAUGGAAAAUCCCACCAAAUACCUUCGGUAAUCAAAAUGUACCUCAACGCCCUUUUUGUAAAAUUAAAAGUUUUAUAGGUACACCAAUUGUGUUGAAUUGAUAGAUAUGUUUGCCUGUAUUGGGGCAAGUUUAGUUGCUAUUAACAGCAUCUUAGUGUAUCUAUAAACAAAAAGCAACUCCUUUUAGCUCCUCUCUUGUCAAUAUGUUAUUACUUGUCGUUACUUCCUUUAUGAUAUGGUAUGUUUUAAAUUGUUACAAAUCAUUCUUUAUAUAUUAUUUUUGAAAUAAAAUCUUUGCAAAAGCUAAUAAAAUGGAAGAAAAAUUUUGUUGGUAUGUAUUUUAUACCUAUCUUUGCACGCAUAGACUCAUAUAACCAAUACUUAGCGAAGUGUUCAAUAUAUAAGGUAGGCUUUAUUAUGUGAAUAAUUAGAUAUGGGCGUACCAAACUAUUGUGAAGCAAAAAUUAGAAUUAGAUAAUAAUAAAAACUUAAAAAUGU ........((((((((((((....))))))...........(((((((((((((((((...)))))))))))))))))........((((((((((((...((((........((((((((((........((((((((((((.......(((((.(.((((((((..((.(((((...((((((((......((((.((..(((...((((.....))))........((((((.....)))))))))..)).)))).((((((((((((((((((((((.((((.....)))).)).))))))))).).)))...)))))))))))))))............(((((((.(((....................((((.........))))........((((((((.............((((((((((((.....((((((..(((((((.((..(((((((......)))))))..))....)))))))))))))....))))))))))))))))))))....))).))))))).....))))).)).))))..)))).).))))).(((((..(((((.(((((.(((...........))).)))))...)))))(((((((((((.((........)).)))))).)))))....))))).....))))))))))))))).))))))).....(((((.(((((((....(((((...(((((((....)))))))...)))))..((((.((((...(((.(((....))).))).)))).))))...))).))))..)))))..))))..)))).)))))))).........)))))) (-206.01) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 822 590 541 189 140 pint:PI1870|5end_hypothetical_protein_1815302..1815532_POSITIVE 769 558 511 156 104 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 768 558 511 226 179 pint:PI0056|5end_conserved_hypothetical_protein;_possible_DNA_uptake_protein_54967..55197_POSITIVE 768 558 511 74 27 pint:PI0055|5end_hypothetical_protein_54815..55045_POSITIVE 756 628 581 78 31 pint:PI0755|5end_hypothetical_protein_686691..686921_POSITIVE 737 558 511 186 139 pint:PI2003|5end_hypothetical_protein_1960823..1961053_POSITIVE 700 628 581 122 75 pint:PI0851|5end_hypothetical_protein_784310..784540_POSITIVE 700 628 581 67 20 pint:PI0200|5end_hypothetical_protein_191545..191775_POSITIVE 696 558 511 205 158 pint:PI0202|5end_DNA_helicase_191753..191983_POSITIVE 696 558 511 162 115 pint:PI0159|5end_hypothetical_protein_151273..151503_POSITIVE 696 558 511 74 27 pint:PI0157|5end_hypothetical_protein_151185..151415_POSITIVE 684 558 511 151 104 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 668 556 511 213 168 pint:PI0007|5end_hypothetical_protein_6417..6647_POSITIVE 664 610 563 85 38 pint:PI2128|5end_hypothetical_protein_2076512..2076742_POSITIVE 663 558 511 151 99 pint:PI2111|5end_conserved_hypothetical_protein_2062771..2063001_POSITIVE 655 580 531 230 181 pint:PI1949|5end_aminotransferase,_class_V_1903218..1903448_POSITIVE 655 580 531 96 47 pint:PI1948|5end_hypothetical_protein_1903084..1903314_POSITIVE 645 610 563 49 2 pint:PI1733|5end_hypothetical_protein_1652160..1652390_POSITIVE 645 610 563 49 2 pint:PI0182|5end_hypothetical_protein_174093..174323_POSITIVE 624 628 581 122 75 pint:PI0841|5end_hypothetical_protein_775406..775636_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 728 558 511 111 64 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 712 560 511 123 74 pint:PI0755|3end_hypothetical_protein_686884..687034_POSITIVE 708 558 511 107 60 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 696 558 511 107 60 pint:PI0200|3end_hypothetical_protein_191735..191885_POSITIVE 696 558 511 107 60 pint:PI0158|3end_hypothetical_protein_151298..151448_POSITIVE 694 558 511 67 15 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 692 590 541 139 90 pint:PI2011|3end_hypothetical_protein_1970730..1970880_POSITIVE 668 556 511 105 60 pint:PI0004|3end_hypothetical_protein_6389..6539_POSITIVE 653 578 532 135 89 pint:PI1666|3end_conserved_hypothetical_protein_1579418..1579568_POSITIVE 647 558 511 147 100 pint:PI0104|3end_hypothetical_protein_99346..99496_POSITIVE 645 590 541 139 90 pint:PI2131|3end_hypothetical_protein_2080868..2081018_POSITIVE 640 590 541 133 84 pint:PI0182|3end_hypothetical_protein_174277..174427_POSITIVE 625 569 521 128 80 pint:PI1076|3end_hypothetical_protein_999065..999215_POSITIVE 616 556 511 151 106 pint:PI0099|3end_hypothetical_protein_95777..95927_POSITIVE 610 560 512 109 59 pint:PI0551|3end_hypothetical_protein_502683..502833_POSITIVE 592 558 514 117 73 pint:PI1601|3end_hypothetical_protein_1530454..1530604_POSITIVE 576 590 541 139 90 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 555 628 582 137 91 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 555 628 582 50 4 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 520 590 541 139 90 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE