Origin IGS: taaaatcattgcaacagcgtttcagaattaggaaaatacagattcagtagcactttattggaggaactattttcttctttatagctcaaagcagatggtgaaaatcgccttgattttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatgtattgataaatagacagttacacaacctctatccttccgaaaaatatttacacgtatttatcgacagatgcacgcaaccaaagcagttttaataggctgttcagtgctttccaaacatctggttggttgagcta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tagctcaaccaaccagatgtttggaaagcactgaacagcctattaaaactgctttggttgcgtgcatctgtcgataaatacgtgtaaatatttttcggaaggatagaggttgtgtaactgtctatttatcaatacattataaaacctattgttttgcattccaaaagcggctgttttgcaacgtaaaacatacgcttttaccgtgcaaaacagccgctttcgcaatgccaaatcgaaattatcgtttttcgtcagaattatttttacaaaatcaaggcgattttcaccatctgctttgagctataaagaagaaaatagttcctccaataaagtgctactgaatctgtattttcctaattctgaaacgctgttgcaatgatttta Mask Tandem Repeat Region ================================================ taaaatcattgcaacagcgtttcagaattaggaaaatacagattcagtagcactttattggaggaactattttcttctttatagctcaaagcagatggtgaaaatcgccttgattttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatgtattgataaatagacagttacacaacctctatccttccgaaaaatatttacacgtatttatcgacagatgcacgcaaccaaagcagttttaataggctgttcagtgctttccaaacatctggttggttgagcta Find is-nt database================================================ Query_seq: PI1915:PI1916|PI1915:PI1916:conserved hypothetical protein:conserved hypothetical protein:->->:1859967..1860350 384 taaaatcattgcaacagcgtttcagaattaggaaaatacagattcagtagcactttattggaggaactattttcttctttatagctcaaagcagatggtgaaaatcgccttgattttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatgtattgataaatagacagttacacaacctctatccttccgaaaaatatttacacgtatttatcgacagatgcacgcaaccaaagcagttttaataggctgttcagtgctttccaaacatctggttggttgagcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1915:PI1916|PI1915:PI1916:conserved hypothetical protein:conserved hypothetical protein:->->:1859967..1860350 384 taaaatcattgcaacagcgtttcagaattaggaaaatacagattcagtagcactttattggaggaactattttcttctttatagctcaaagcagatggtgaaaatcgccttgattttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatgtattgataaatagacagttacacaacctctatccttccgaaaaatatttacacgtatttatcgacagatgcacgcaaccaaagcagttttaataggctgttcagtgctttccaaacatctggttggttgagcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1915:PI1916|PI1915:PI1916:conserved hypothetical protein:conserved hypothetical protein:->->:1859967..1860350 384 taaaatcattgcaacagcgtttcagaattaggaaaatacagattcagtagcactttattggaggaactattttcttctttatagctcaaagcagatggtgaaaatcgccttgattttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatgtattgataaatagacagttacacaacctctatccttccgaaaaatatttacacgtatttatcgacagatgcacgcaaccaaagcagttttaataggctgttcagtgctttccaaacatctggttggttgagcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taaaatcattgcaacagcgtttcagaattaggaaaatacagattcagtagcactttattggaggaactattttcttctttatagctcaaagcagatggtgaaaatcgccttgattttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatgtattgataaatagacagttacacaacctctatccttccgaaaaatatttacacgtatttatcgacagatgcacgcaaccaaagcagttttaataggctgttcagtgctttccaaacatctggttggttgagcta Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 124 End: 339 ........................................................................................................................... M I L T K N D N F D L A L R K R L F C T V K A Y V L R C K T A A F G M Q N N R F Y N V L I N R Q L H N L Y P S E K Y L H ............................................. Protein_Len: 41 Strand: + Start: 260 End: 382 ................................................................................................................................................................................................................................................................... M D S Y T T S I L P K N I Y T Y L S T D A R N Q S S F N R L F S A F Q T S G W L S .. Protein_Len: 60 Strand: - Start: 89 End: 307 ........................................................................................ E S S F R Y N R N P M A F A A T K C P L L T H K V N C F L R K Q F A F C Y T K Y H I S L Y V T V C G R D K R F I N V R M ............................................................................. Protein_Len: 38 Strand: - Start: 82 End: 195 ................................................................................. L E F C I T F I A K I K Y F Y N Q R F V I I E I Q C Q S L P Q K A R Y F R M ............................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 9 End: 236 ........ N S S S N E E K Y S L A S P S F R R S K T F I I R V F F S L K S K A N R F R S N Q V T F A Y T K R Q L V A A K P I C F M .................................................................................................................................................... taaaatcattgcaacagcgtttcagaattaggaaaatacagattcagtagcactttattggaggaactattttcttctttatagctcaaagcagatggtgaaaatcgccttgattttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatgtattgataaatagacagttacacaacctctatccttccgaaaaatatttacacgtatttatcgacagatgcacgcaaccaaagcagttttaataggctgttcagtgctttccaaacatctggttggttgagcta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 85 Start: 220 End: 249 ...........................................................................................................................................................................................................................TTTGGAATGCAAAACAATAGGTTTTATAAT....................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taaaatcattgcaacagcgtttcagaattaggaaaatacagattcagtagcactttattggaggaactattttcttctttatagctcaaagcagatggtgaaaatcgccttgattttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatgtattgataaatagacagttacacaacctctatccttccgaaaaatatttacacgtatttatcgacagatgcacgcaaccaaagcagttttaataggctgttcagtgctttccaaacatctggttggttgagcta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 52 HP_score: -3.0 Tail_Score: -3.91897 Start: 61 End: 77 Full_Region: AGTAGCACTTTATTG GAGGAA CTATT TTCTTC TTTATAGCTCAAAGC ............................................................GAGGAACTATTTTCTTC................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -18.6 Tail_Score: -4.13767 Start: 168 End: 218 Full_Region: TTTGGCATTGCGAAA GCGGCTGTTTTGCACGGTAAAA GCGTATG TTTTACGTTGCAAAACAGCCGC TTTTGGAATGCAAAA .......................................................................................................................................................................GCGGCTGTTTTGCACGGTAAAAGCGTATGTTTTACGTTGCAAAACAGCCGC...................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -18.6 Tail_Score: -3.57144 Start: 168 End: 218 Full_Region: ttttgcattccaaaa gcggctgttttgcaacgtaaaa catacgc ttttaccgtgcaaaacagccgc tttcgcaatgccaaa .......................................................................................................................................................................gcggctgttttgcaacgtaaaacatacgcttttaccgtgcaaaacagccgc...................................................................................................................................................................... TransTerm Strand: - Conf: 70 HP_score: -6.7 Tail_Score: -4.13767 Start: 190 End: 218 Full_Region: ttttgcattccaaaa gcggctgttttgc aac gtaaaacatacgc ttttaccgtgcaaaa .............................................................................................................................................................................................gcggctgttttgcaacgtaaaacatacgc...................................................................................................................................................................... Find igs database================================================ Query_seq: PI1915:PI1916|PI1915:PI1916:conserved hypothetical protein:conserved hypothetical protein:->->:1859967..1860350 384 taaaatcattgcaacagcgtttcagaattaggaaaatacagattcagtagcactttattggaggaactattttcttctttatagctcaaagcagatggtgaaaatcgccttgattttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatgtattgataaatagacagttacacaacctctatccttccgaaaaatatttacacgtatttatcgacagatgcacgcaaccaaagcagttttaataggctgttcagtgctttccaaacatctggttggttgagcta Intra-Species Hit: Count: 32 Min: 1 Max: 384 Len: 384 Subject: pint_PI1915_PI1916|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1859967,1860350]|384 HSP 1 e-value: 0.0 bit: 761.0 Len: 384 Query Start:1 Query End:384 Subject Strand: POSITIVE Subject Start: 1 Subject End: 384 taaaatcattgcaacagcgtttcagaattaggaaaatacagattcagtagcactttattggaggaactattttcttctttatagctcaaagcagatggtgaaaatcgccttgattttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatgtattgataaatagacagttacacaacctctatccttccgaaaaatatttacacgtatttatcgacagatgcacgcaaccaaagcagttttaataggctgttcagtgctttccaaacatctggttggttgagcta taaaatcattgcaacagcgtttcagaattaggaaaatacagattcagtagcactttattggaggaactattttcttctttatagctcaaagcagatggtgaaaatcgccttgattttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatgtattgataaatagacagttacacaacctctatccttccgaaaaatatttacacgtatttatcgacagatgcacgcaaccaaagcagttttaataggctgttcagtgctttccaaacatctggttggttgagcta Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 8.0E-35 bit: 149.0 Len: 146 Query Start:100 Query End:245 Subject Strand: POSITIVE Subject Start: 201 Subject End: 346 ...................................................................................................gaaaatcgccttgattttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggtttta........................................................................................................................................... ...................................................................................................gaaaatcgcctcggttttgtaaagataatttcgctgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaa-cctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttta........................................................................................................................................... HSP 2 e-value: 3.0E-19 bit: 97.6 Len: 57 Query Start:165 Query End:221 Subject Strand: NEGATIVE Subject Start: 266 Subject End: 322 ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt................................................................................................................................................................... ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgcttt................................................................................................................................................................... Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 1.0E-33 bit: 145.0 Len: 136 Query Start:115 Query End:250 Subject Strand: NEGATIVE Subject Start: 381 Subject End: 516 ..................................................................................................................tttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatg...................................................................................................................................... ..................................................................................................................tttgtaaagataattctgatgaaaaatgataatttcgatttggcattgcgaaagcggctgttttgcgatgcaaaa-cctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatg...................................................................................................................................... HSP 2 e-value: 2.0E-14 bit: 81.8 Len: 57 Query Start:165 Query End:221 Subject Strand: POSITIVE Subject Start: 410 Subject End: 466 ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt................................................................................................................................................................... ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaacagccgcttt................................................................................................................................................................... Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 3.0E-28 bit: 127.0 Len: 158 Query Start:98 Query End:255 Subject Strand: POSITIVE Subject Start: 139 Subject End: 296 .................................................................................................gtgaaaatcgccttgattttgtaaaaataattc-tgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatgtattg................................................................................................................................. .................................................................................................gtgaaaatcgcttcgattttgtaaagataattcgttaagaaaa-cgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacc-tacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattg................................................................................................................................. HSP 2 e-value: 7.0E-17 bit: 89.7 Len: 57 Query Start:165 Query End:221 Subject Strand: NEGATIVE Subject Start: 206 Subject End: 262 ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt................................................................................................................................................................... ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagcagcttt................................................................................................................................................................... Subject: pint_PI0694_PI0695|Na+/dicarboxylate or sulfate symporter:xanthine/uracil permease family protein|POSITIVE:POSITIVE|[631238,631552]|315 HSP 1 e-value: 7.0E-26 bit: 119.0 Len: 139 Query Start:106 Query End:244 Subject Strand: POSITIVE Subject Start: 80 Subject End: 218 .........................................................................................................cgccttgattttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................ .........................................................................................................cgccttggttttgtaaagataattccgacggaaaacggtaatttcgatttgacactgcgaaagcggctcttttgcaacgcaaaa-cctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................ HSP 2 e-value: 2.0E-14 bit: 81.8 Len: 57 Query Start:165 Query End:221 Subject Strand: NEGATIVE Subject Start: 139 Subject End: 195 ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt................................................................................................................................................................... ....................................................................................................................................................................aaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgcttt................................................................................................................................................................... Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 3.0E-25 bit: 117.0 Len: 131 Query Start:114 Query End:244 Subject Strand: NEGATIVE Subject Start: 57 Subject End: 187 .................................................................................................................ttttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................ .................................................................................................................ttttgtaaagataattccgacgaaaaacggtaatttcgatttggcgttgcgaaagcggctgttttgcagcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt............................................................................................................................................ HSP 2 e-value: 4.0E-9 bit: 63.9 Len: 48 Query Start:174 Query End:221 Subject Strand: POSITIVE Subject Start: 89 Subject End: 136 .............................................................................................................................................................................gttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt................................................................................................................................................................... .............................................................................................................................................................................gttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgcttt................................................................................................................................................................... Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 2.0E-23 bit: 111.0 Len: 147 Query Start:114 Query End:260 Subject Strand: NEGATIVE Subject Start: 25 Subject End: 171 .................................................................................................................ttttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatgtattgataaa............................................................................................................................ .................................................................................................................ttttgtaaagataattctgatgaaaaacaataatttcgttttgacgttgcgaaagcggctcttttacaacgcaaaacc-tacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggttttgtaaagcattgataaa............................................................................................................................ HSP 2 e-value: 4.0E-12 bit: 73.8 Len: 57 Query Start:165 Query End:221 Subject Strand: POSITIVE Subject Start: 64 Subject End: 120 ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt................................................................................................................................................................... ....................................................................................................................................................................aaagcggctcttttgcacggtaaaagcgtaggttttgcgttgtaaaagagccgcttt................................................................................................................................................................... Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 7.0E-23 bit: 109.0 Len: 162 Query Start:114 Query End:275 Subject Strand: POSITIVE Subject Start: 10 Subject End: 171 .................................................................................................................ttttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatgtattgataaatagacagttacacaa............................................................................................................. .................................................................................................................ttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacc-tacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgatagaaagagagttatacaa............................................................................................................. HSP 2 e-value: 7.0E-17 bit: 89.7 Len: 65 Query Start:157 Query End:221 Subject Strand: NEGATIVE Subject Start: 61 Subject End: 125 ............................................................................................................................................................gcattgcgaaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt................................................................................................................................................................... ............................................................................................................................................................gcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccacttt................................................................................................................................................................... Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 1.0E-21 bit: 105.0 Len: 112 Query Start:137 Query End:248 Subject Strand: POSITIVE Subject Start: 92 Subject End: 203 ........................................................................................................................................aaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataa........................................................................................................................................ ........................................................................................................................................aaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacc-tacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataa........................................................................................................................................ HSP 2 e-value: 1.0E-9 bit: 65.9 Len: 57 Query Start:165 Query End:221 Subject Strand: NEGATIVE Subject Start: 120 Subject End: 176 ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt................................................................................................................................................................... ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgcttt................................................................................................................................................................... Subject: pint_PI2056_PI2057|conserved hypothetical protein:conserved hypothetical protein; possible metal-dependent membrane protease|POSITIVE:POSITIVE|[2014489,2015078]|590 HSP 1 e-value: 7.0E-20 bit: 99.6 Len: 148 Query Start:102 Query End:249 Subject Strand: POSITIVE Subject Start: 329 Subject End: 476 .....................................................................................................aaatcgccttgattttgtaaaaataattc-tgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataat....................................................................................................................................... .....................................................................................................aaatcgccttgattttgtaaagataattcgttaagaaaa-caataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaa-cttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaat....................................................................................................................................... HSP 2 e-value: 1.0E-9 bit: 65.9 Len: 57 Query Start:165 Query End:221 Subject Strand: NEGATIVE Subject Start: 392 Subject End: 448 ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt................................................................................................................................................................... ....................................................................................................................................................................aaagcggctgttttgcatggtaaaagcgtaagttttgcattacaaaagagccgcttt................................................................................................................................................................... Subject: pint_PI1803_PI1804|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1737852,1738248]|397 HSP 1 e-value: 7.0E-20 bit: 99.6 Len: 109 Query Start:137 Query End:245 Subject Strand: POSITIVE Subject Start: 289 Subject End: 397 ........................................................................................................................................aaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggtttta........................................................................................................................................... ........................................................................................................................................aaaacggtaatttcgatttggcattgcgaaagcggctcttttgcaacgcaaaa-cctacgcttttaccgtgcaaaacagccgcttttacaatgcaaaacaataggtttta........................................................................................................................................... HSP 2 e-value: 7.0E-17 bit: 89.7 Len: 57 Query Start:165 Query End:221 Subject Strand: NEGATIVE Subject Start: 317 Subject End: 373 ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt................................................................................................................................................................... ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgcttt................................................................................................................................................................... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 3.0E-19 bit: 97.6 Len: 147 Query Start:98 Query End:244 Subject Strand: NEGATIVE Subject Start: 332 Subject End: 478 .................................................................................................gtgaaaatcgccttgattttgtaaaaataattc-tgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................ .................................................................................................gtgaaaatcgctttggttttgtaaagataattcgttaag-aaaacgataatttcgatttgacgttgcgaaagcagctcttttgcaacgcaaaa-cctatgcttttaccgtgcaaaacagccgcttttaggatgcaaaacaataggtttt............................................................................................................................................ HSP 2 e-value: 4.0E-12 bit: 73.8 Len: 57 Query Start:165 Query End:221 Subject Strand: POSITIVE Subject Start: 355 Subject End: 411 ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt................................................................................................................................................................... ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcataggttttgcgttgcaaaagagctgcttt................................................................................................................................................................... Subject: pint_PI0652_PI0653|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[595853,596185]|333 HSP 1 e-value: 3.0E-19 bit: 97.6 Len: 137 Query Start:114 Query End:250 Subject Strand: POSITIVE Subject Start: 147 Subject End: 283 .................................................................................................................ttttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatg...................................................................................................................................... .................................................................................................................ttttgtaaagataattctgaagaaaaacgataatttcgatttggcactgcgaaagtgtaggttttaccgtccaaaagcggctcttttgccttgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatg...................................................................................................................................... Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 103 Query Start:142 Query End:244 Subject Strand: NEGATIVE Subject Start: 411 Subject End: 513 .............................................................................................................................................gataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................ .............................................................................................................................................gataatttcgttttgacgttgcgaaagcggctgttttgcgaggtaaaacc-tacgcttttgccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................ HSP 2 e-value: 2.0E-14 bit: 81.8 Len: 57 Query Start:165 Query End:221 Subject Strand: POSITIVE Subject Start: 434 Subject End: 490 ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt................................................................................................................................................................... ....................................................................................................................................................................aaagcggctgttttgcacggcaaaagcgtaggttttacctcgcaaaacagccgcttt................................................................................................................................................................... Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 135 Query Start:114 Query End:248 Subject Strand: NEGATIVE Subject Start: 107 Subject End: 241 .................................................................................................................ttttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataa........................................................................................................................................ .................................................................................................................ttttgtaaaaataattccgttaaaaagcgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacc-tacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataa........................................................................................................................................ HSP 2 e-value: 7.0E-17 bit: 89.7 Len: 57 Query Start:165 Query End:221 Subject Strand: POSITIVE Subject Start: 134 Subject End: 190 ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt................................................................................................................................................................... ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgcttt................................................................................................................................................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 102 Query Start:143 Query End:244 Subject Strand: POSITIVE Subject Start: 120 Subject End: 221 ..............................................................................................................................................ataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................ ..............................................................................................................................................ataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacc-tacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggtttt............................................................................................................................................ HSP 2 e-value: 7.0E-17 bit: 89.7 Len: 53 Query Start:165 Query End:217 Subject Strand: NEGATIVE Subject Start: 146 Subject End: 198 ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccg....................................................................................................................................................................... ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccg....................................................................................................................................................................... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 146 Query Start:114 Query End:259 Subject Strand: NEGATIVE Subject Start: 82 Subject End: 227 .................................................................................................................ttttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatgtattgataa............................................................................................................................. .................................................................................................................ttttgtaaagataattctgttaaaaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacc-tacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgcaatgcattgataa............................................................................................................................. HSP 2 e-value: 1.0E-9 bit: 65.9 Len: 57 Query Start:165 Query End:221 Subject Strand: POSITIVE Subject Start: 120 Subject End: 176 ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt................................................................................................................................................................... ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgcttt................................................................................................................................................................... Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 101 Query Start:144 Query End:244 Subject Strand: NEGATIVE Subject Start: 88 Subject End: 188 ...............................................................................................................................................taatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................ ...............................................................................................................................................taatttcgatttgacattgcgaaagcggctcttttgcgatgcaaaacc-tacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................ HSP 2 e-value: 4.0E-12 bit: 73.8 Len: 57 Query Start:165 Query End:221 Subject Strand: POSITIVE Subject Start: 111 Subject End: 167 ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt................................................................................................................................................................... ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgcttt................................................................................................................................................................... Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 7.0E-17 bit: 89.7 Len: 57 Query Start:165 Query End:221 Subject Strand: POSITIVE Subject Start: 121 Subject End: 177 ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt................................................................................................................................................................... ....................................................................................................................................................................aaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgcttt................................................................................................................................................................... HSP 2 e-value: 6.0E-14 bit: 79.8 Len: 131 Query Start:114 Query End:244 Subject Strand: NEGATIVE Subject Start: 98 Subject End: 228 .................................................................................................................ttttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................ .................................................................................................................ttttgtaaagataattctgttaaaaactgataactgcgttttgacattgcgaaagcggctgttttgcaacgcaaaacc-tacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggtttt............................................................................................................................................ Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 7.0E-17 bit: 89.7 Len: 136 Query Start:115 Query End:250 Subject Strand: POSITIVE Subject Start: 480 Subject End: 615 ..................................................................................................................tttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatg...................................................................................................................................... ..................................................................................................................tttgtaaagataattctgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcgatgcaaaacc-tacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatg...................................................................................................................................... HSP 2 e-value: 1.0E-9 bit: 65.9 Len: 57 Query Start:165 Query End:221 Subject Strand: NEGATIVE Subject Start: 530 Subject End: 586 ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt................................................................................................................................................................... ....................................................................................................................................................................aaagcggctgttttgcatggtaaaagcgtaggttttgcatcgcaaaagagccgcttt................................................................................................................................................................... Subject: pint_PI0195_PI0196|epimerase/reductase:hypothetical protein|POSITIVE:POSITIVE|[188263,188574]|312 HSP 1 e-value: 7.0E-17 bit: 89.7 Len: 105 Query Start:145 Query End:249 Subject Strand: POSITIVE Subject Start: 176 Subject End: 280 ................................................................................................................................................aatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataat....................................................................................................................................... ................................................................................................................................................aatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaat....................................................................................................................................... HSP 2 e-value: 4.0E-9 bit: 63.9 Len: 48 Query Start:174 Query End:221 Subject Strand: NEGATIVE Subject Start: 196 Subject End: 243 .............................................................................................................................................................................gttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt................................................................................................................................................................... .............................................................................................................................................................................gttttgcacggtaaaagcggctgttttgcgatgcaaaacagccgcttt................................................................................................................................................................... Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 68 Query Start:114 Query End:181 Subject Strand: NEGATIVE Subject Start: 170 Subject End: 237 .................................................................................................................ttttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgca........................................................................................................................................................................................................... .................................................................................................................ttttgtaaagattattcgtaagaaaaatgataatttcgatttggcattgcgaaagcggctgttttgca........................................................................................................................................................................................................... HSP 2 e-value: 4.0E-9 bit: 63.9 Len: 44 Query Start:216 Query End:259 Subject Strand: NEGATIVE Subject Start: 92 Subject End: 135 .......................................................................................................................................................................................................................cgcttttggaatgcaaaacaataggttttataatgtattgataa............................................................................................................................. .......................................................................................................................................................................................................................cgcttttggaatgcaaaacaataggttttgcaatgtgttgataa............................................................................................................................. HSP 3 e-value: 9.0E-7 bit: 56.0 Len: 48 Query Start:174 Query End:221 Subject Strand: POSITIVE Subject Start: 139 Subject End: 186 .............................................................................................................................................................................gttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt................................................................................................................................................................... .............................................................................................................................................................................gttttacacggcaaaagcggctgttttgcgttgcaaaacagccgcttt................................................................................................................................................................... Subject: pint_PI0854_PI0855|MiaB-like tRNA modifying enzyme:hypothetical protein|POSITIVE:POSITIVE|[788060,789233]|1174 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 136 Query Start:135 Query End:270 Subject Strand: POSITIVE Subject Start: 762 Subject End: 897 ......................................................................................................................................gaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatgtattgataaatagacagtta.................................................................................................................. ......................................................................................................................................gaaaaatgataatttcgatttggcgttgcgaaagcgtaggttttgcaacgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttataatatgttgataaacagaaagtta.................................................................................................................. HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 39 Query Start:174 Query End:212 Subject Strand: NEGATIVE Subject Start: 801 Subject End: 839 .............................................................................................................................................................................gttttgcacggtaaaagcgtatgttttacgttgcaaaac............................................................................................................................................................................ .............................................................................................................................................................................gttttgcacggtaaaagcggctgttttgcgttgcaaaac............................................................................................................................................................................ Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 138 Query Start:113 Query End:250 Subject Strand: POSITIVE Subject Start: 110 Subject End: 247 ................................................................................................................attttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatg...................................................................................................................................... ................................................................................................................attttgtaaagataattctgttaaaaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacc-tacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttataatg...................................................................................................................................... HSP 2 e-value: 4.0E-12 bit: 73.8 Len: 57 Query Start:165 Query End:221 Subject Strand: NEGATIVE Subject Start: 162 Subject End: 218 ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt................................................................................................................................................................... ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgcttt................................................................................................................................................................... Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 126 Query Start:135 Query End:260 Subject Strand: POSITIVE Subject Start: 134 Subject End: 259 ......................................................................................................................................gaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatgtattgataaa............................................................................................................................ ......................................................................................................................................gaaaaatggtaatttcgatttgacgttgcgaaagcggctcttttgcgatgcaaaacc-tacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgttgataaa............................................................................................................................ HSP 2 e-value: 4.0E-12 bit: 73.8 Len: 57 Query Start:165 Query End:221 Subject Strand: NEGATIVE Subject Start: 164 Subject End: 220 ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt................................................................................................................................................................... ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgcttt................................................................................................................................................................... Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 115 Query Start:135 Query End:249 Subject Strand: NEGATIVE Subject Start: 228 Subject End: 342 ......................................................................................................................................gaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataat....................................................................................................................................... ......................................................................................................................................gaaaaacgataatttcgatttggcattgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacacttttggaatgcaaaacaataggttttataat....................................................................................................................................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 136 Query Start:114 Query End:249 Subject Strand: POSITIVE Subject Start: 146 Subject End: 281 .................................................................................................................ttttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataat....................................................................................................................................... .................................................................................................................ttttgtaaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacc-tacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat....................................................................................................................................... HSP 2 e-value: 4.0E-12 bit: 73.8 Len: 57 Query Start:165 Query End:221 Subject Strand: NEGATIVE Subject Start: 197 Subject End: 253 ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt................................................................................................................................................................... ....................................................................................................................................................................aaagcggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgcttt................................................................................................................................................................... Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 139 Query Start:110 Query End:248 Subject Strand: NEGATIVE Subject Start: 170 Subject End: 308 .............................................................................................................ttgattttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataa........................................................................................................................................ .............................................................................................................ttgattttgtaaagataattcggagggaaaatgataatttcgatttgacgttgcgaaagcgtatgttttgcgatgcaaaagagccgcttttaccgtgcaaaacctacgcttttacaatgcaaaacaataggttttataa........................................................................................................................................ Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 115 Query Start:144 Query End:258 Subject Strand: POSITIVE Subject Start: 109 Subject End: 223 ...............................................................................................................................................taatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataatgtattgata.............................................................................................................................. ...............................................................................................................................................taattgcgctttggcattgcgaaagcggctgttttgcgatgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatgtgttgata.............................................................................................................................. Subject: pint_PI1981_PI1982|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1938199,1938578]|380 HSP 1 e-value: 2.0E-11 bit: 71.9 Len: 68 Query Start:114 Query End:181 Subject Strand: POSITIVE Subject Start: 144 Subject End: 211 .................................................................................................................ttttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgca........................................................................................................................................................................................................... .................................................................................................................ttttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgca........................................................................................................................................................................................................... HSP 2 e-value: 2.0E-11 bit: 71.9 Len: 40 Query Start:216 Query End:255 Subject Strand: POSITIVE Subject Start: 246 Subject End: 285 .......................................................................................................................................................................................................................cgcttttggaatgcaaaacaataggttttataatgtattg................................................................................................................................. .......................................................................................................................................................................................................................cgcttttggaatgcaaaacaataggttttataatatattg................................................................................................................................. Subject: pint_PI1958_PI1959|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1917430,1917847]|418 HSP 1 e-value: 2.0E-11 bit: 71.9 Len: 40 Query Start:216 Query End:255 Subject Strand: POSITIVE Subject Start: 284 Subject End: 323 .......................................................................................................................................................................................................................cgcttttggaatgcaaaacaataggttttataatgtattg................................................................................................................................. .......................................................................................................................................................................................................................cgcttttggaatgcaaaacaataggttttataatatattg................................................................................................................................. HSP 2 e-value: 1.0E-9 bit: 65.9 Len: 69 Query Start:113 Query End:181 Subject Strand: POSITIVE Subject Start: 181 Subject End: 249 ................................................................................................................attttgtaaaaataattctgacgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgca........................................................................................................................................................................................................... ................................................................................................................attttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgca........................................................................................................................................................................................................... HSP 3 e-value: 4.0E-6 bit: 54.0 Len: 55 Query Start:174 Query End:228 Subject Strand: NEGATIVE Subject Start: 226 Subject End: 280 .............................................................................................................................................................................gttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttttggaatg............................................................................................................................................................ .............................................................................................................................................................................gttttacacggtaaaagcggctgttttgcaatgcaaaacagccgcttttgcaatg............................................................................................................................................................ Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 1.0E-9 bit: 65.9 Len: 109 Query Start:136 Query End:244 Subject Strand: POSITIVE Subject Start: 166 Subject End: 274 .......................................................................................................................................aaaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................ .......................................................................................................................................aaaaatgataatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt............................................................................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAAUCAUUGCAACAGCGUUUCAGAAUUAGGAAAAUACAGAUUCAGUAGCACUUUAUUGGAGGAACUAUUUUCUUCUUUAUAGCUCAAAGCAGAUGGUGAAAAUCGCCUUGAUUUUGUAAAAAUAAUUCUGACGAAAAACGAUAAUUUCGAUUUGGCAUUGCGAAAGCGGCUGUUUUGCACGGUAAAAGCGUAUGUUUUACGUUGCAAAACAGCCGCUUUUGGAAUGCAAAACAAUAGGUUUUAUAAUGUAUUGAUAAAUAGACAGUUACACAACCUCUAUCCUUCCGAAAAAUAUUUACACGUAUUUAUCGACAGAUGCACGCAACCAAAGCAGUUUUAAUAGGCUGUUCAGUGCUUUCCAAACAUCUGGUUGGUUGAGCUA ..(((((...((....))...(((((((((......((((((.(((..(((....((..(((((((....)))))))..))..)))..........((((.....)))).))).))))))....))))))))).................))))).(((((.(((((((((((((((((((((...(((((....))))).)).))))))))))))))))))).)))))....(((((.(((....))).)))))..........((((...(((((..........(((.((((((......)))))).))).((((((...(((.....((((((((....))))))))...)))........))))))...))))))))). (-107.60) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGCUCAACCAACCAGAUGUUUGGAAAGCACUGAACAGCCUAUUAAAACUGCUUUGGUUGCGUGCAUCUGUCGAUAAAUACGUGUAAAUAUUUUUCGGAAGGAUAGAGGUUGUGUAACUGUCUAUUUAUCAAUACAUUAUAAAACCUAUUGUUUUGCAUUCCAAAAGCGGCUGUUUUGCAACGUAAAACAUACGCUUUUACCGUGCAAAACAGCCGCUUUCGCAAUGCCAAAUCGAAAUUAUCGUUUUUCGUCAGAAUUAUUUUUACAAAAUCAAGGCGAUUUUCACCAUCUGCUUUGAGCUAUAAAGAAGAAAAUAGUUCCUCCAAUAAAGUGCUACUGAAUCUGUAUUUUCCUAAUUCUGAAACGCUGUUGCAAUGAUUUUA ..((.(((((((.(((.((((..(......)..))))...........)))..))))))).))...((((.(((.....(((.((((.....((((((.((((((((((((.(((((.(((............)))))))).))))).)))))))(((((.(.(((((((((((((((((..((((((.......))))))..))))))))))))))))).).)))))....)))))))))))))...))).))))...........(((((((..((((((((((...........(((((((..........))))))).......(((((((..........)))))))........)))))....)))))..))))))). (-95.50) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 805 210 161 109 60 pint:PI0978|5end_hypothetical_protein_904867..905097_POSITIVE 800 220 171 212 163 pint:PI0024|5end_hypothetical_protein_28378..28608_POSITIVE 799 210 161 69 15 pint:PI0322|5end_hypothetical_protein_303508..303738_POSITIVE 781 210 161 216 167 pint:PI0575|5end_hypothetical_protein_519561..519791_POSITIVE 780 220 171 75 26 pint:PI1204|5end_hypothetical_protein_1124430..1124660_POSITIVE 752 250 202 62 15 pint:PI1905|5end_hypothetical_protein_1847628..1847858_POSITIVE 752 250 202 77 30 pint:PI0061|5end_hypothetical_protein_60500..60730_POSITIVE 749 180 138 43 1 pint:PI1168|5end_hypothetical_protein_1089696..1089926_POSITIVE 743 210 161 69 15 pint:PI2022|5end_hypothetical_protein_1978631..1978861_POSITIVE 730 210 163 48 1 pint:PI1786|5end_hypothetical_protein_1718124..1718354_POSITIVE 730 210 163 229 182 pint:PI1333|5end_conserved_hypothetical_protein_1250777..1251007_POSITIVE 728 220 171 171 122 pint:PI1804|5end_hypothetical_protein_1738109..1738339_POSITIVE 725 249 202 76 30 pint:PI0004|5end_hypothetical_protein_6199..6429_POSITIVE 710 210 163 202 155 pint:PI2046|5end_hypothetical_protein_1999030..1999260_POSITIVE 704 220 171 57 8 pint:PI0638|5end_hypothetical_protein_582218..582448_POSITIVE 699 250 202 105 58 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 699 250 202 105 58 pint:PI1346|5end_hypothetical_protein_1260814..1261044_POSITIVE 694 220 171 226 177 pint:PI0887|5end_hypothetical_protein_817536..817766_POSITIVE 694 220 171 119 70 pint:PI0867|5end_hypothetical_protein_803859..804089_POSITIVE 694 220 171 60 11 pint:PI0089|5end_hypothetical_protein_88162..88392_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 793 180 135 138 93 pint:PI1905|3end_hypothetical_protein_1847854..1848004_POSITIVE 738 180 135 117 72 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 737 190 142 121 73 pint:PI0182|3end_hypothetical_protein_174277..174427_POSITIVE 730 210 163 151 104 pint:PI0095|3end_hypothetical_protein_91850..92000_POSITIVE 721 190 142 127 79 pint:PI2011|3end_hypothetical_protein_1970730..1970880_POSITIVE 710 210 163 151 104 pint:PI0815|3end_hypothetical_protein_754677..754827_POSITIVE 690 210 163 151 104 pint:PI0081|3end_hypothetical_protein_80700..80850_POSITIVE 689 174 135 151 112 pint:PI1167|3end_hypothetical_protein_1089890..1090040_POSITIVE 683 250 202 147 100 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 683 250 202 60 13 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 682 170 121 107 58 pint:PI2131|3end_hypothetical_protein_2080868..2081018_POSITIVE 674 180 133 117 69 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 670 240 193 50 2 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE 670 240 193 78 30 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 668 244 202 48 7 pint:PI0669|3end_hypothetical_protein_611147..611297_POSITIVE 666 180 135 139 94 pint:PI1829|3end_hypothetical_protein_1769439..1769589_POSITIVE 648 200 157 92 49 pint:PI0819|3end_hypothetical_protein_759919..760069_POSITIVE 647 210 161 151 97 pint:PI0638|3end_hypothetical_protein_582402..582552_POSITIVE 647 210 161 146 92 pint:PI0637|3end_hypothetical_protein_582397..582547_POSITIVE 643 249 202 146 100 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE