Origin IGS: ttttatttgattctccttgttcttttgcgatagttcctgcgagtatgcctaatctttcaagatttcatacaacctatgaaactatctatttgcaaagatacgaaaaaatacctaattaaaaggaatatttaatgcgaaaaaaagtttaattagagggatttatagggcattagaagctttataaagagtaatcatatcgctcaatccgctctgagaagaaagtactttttattcactaccctactgctcttgtaaccttatctcaagaagagaaaaatggtaaaacgttgtaaatatttttcacaagcacaacaaccacgtaatcatctgtttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaatcaaccgtgtttttgagtatttttcttgagcataaaagagaaaacaagctcactcaaaacatcaaacgtttctctaaatacaacgagaaccaaccataagcacctactcg .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 cgagtaggtgcttatggttggttctcgttgtatttagagaaacgtttgatgttttgagtgagcttgttttctcttttatgctcaagaaaaatactcaaaaacacggttgattttgtaaagataacattgttaaaaagtgataactgcgctttgacattgcgaaagcgtaggttttgcgatgcaaaagcgccacttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgcaatgcgttgataaacagatgattacgtggttgttgtgcttgtgaaaaatatttacaacgttttaccatttttctcttcttgagataaggttacaagagcagtagggtagtgaataaaaagtactttcttctcagagcggattgagcgatatgattactctttataaagcttctaatgccctataaatccctctaattaaactttttttcgcattaaatattccttttaattaggtattttttcgtatctttgcaaatagatagtttcataggttgtatgaaatcttgaaagattaggcatactcgcaggaactatcgcaaaagaacaaggagaatcaaataaaa Mask Tandem Repeat Region ================================================ ttttatttgattctccttgttcttttgcgatagttcctgcgagtatgcctaatctttcaagatttcatacaacctatgaaactatctatttgcaaagatacgaaaaaatacctaattaaaaggaatatttaatgcgaaaaaaagtttaattagagggatttatagggcattagaagctttataaagagtaatcatatcgctcaatccgctctgagaagaaagtactttttattcactaccctactgctcttgtaaccttatctcaagaagagaaaaatggtaaaacgttgtaaatatttttcacaagcacaacaaccacgtaatcatctgtttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaatcaaccgtgtttttgagtatttttcttgagcataaaagagaaaacaagctcactcaaaacatcaaacgtttctctaaatacaacgagaaccaaccataagcacctactcg Find is-nt database================================================ Query_seq: PI1909:PI1910|PI1909:PI1910:DNA gyrase, B subunit:hypothetical protein:->->:1855331..1855917 587 ttttatttgattctccttgttcttttgcgatagttcctgcgagtatgcctaatctttcaagatttcatacaacctatgaaactatctatttgcaaagatacgaaaaaatacctaattaaaaggaatatttaatgcgaaaaaaagtttaattagagggatttatagggcattagaagctttataaagagtaatcatatcgctcaatccgctctgagaagaaagtactttttattcactaccctactgctcttgtaaccttatctcaagaagagaaaaatggtaaaacgttgtaaatatttttcacaagcacaacaaccacgtaatcatctgtttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaatcaaccgtgtttttgagtatttttcttgagcataaaagagaaaacaagctcactcaaaacatcaaacgtttctctaaatacaacgagaaccaaccataagcacctactcg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1909:PI1910|PI1909:PI1910:DNA gyrase, B subunit:hypothetical protein:->->:1855331..1855917 587 ttttatttgattctccttgttcttttgcgatagttcctgcgagtatgcctaatctttcaagatttcatacaacctatgaaactatctatttgcaaagatacgaaaaaatacctaattaaaaggaatatttaatgcgaaaaaaagtttaattagagggatttatagggcattagaagctttataaagagtaatcatatcgctcaatccgctctgagaagaaagtactttttattcactaccctactgctcttgtaaccttatctcaagaagagaaaaatggtaaaacgttgtaaatatttttcacaagcacaacaaccacgtaatcatctgtttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaatcaaccgtgtttttgagtatttttcttgagcataaaagagaaaacaagctcactcaaaacatcaaacgtttctctaaatacaacgagaaccaaccataagcacctactcg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1909:PI1910|PI1909:PI1910:DNA gyrase, B subunit:hypothetical protein:->->:1855331..1855917 587 ttttatttgattctccttgttcttttgcgatagttcctgcgagtatgcctaatctttcaagatttcatacaacctatgaaactatctatttgcaaagatacgaaaaaatacctaattaaaaggaatatttaatgcgaaaaaaagtttaattagagggatttatagggcattagaagctttataaagagtaatcatatcgctcaatccgctctgagaagaaagtactttttattcactaccctactgctcttgtaaccttatctcaagaagagaaaaatggtaaaacgttgtaaatatttttcacaagcacaacaaccacgtaatcatctgtttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaatcaaccgtgtttttgagtatttttcttgagcataaaagagaaaacaagctcactcaaaacatcaaacgtttctctaaatacaacgagaaccaaccataagcacctactcg Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ttttatttgattctccttgttcttttgcgatagttcctgcgagtatgcctaatctttcaagatttcatacaacctatgaaactatctatttgcaaagatacgaaaaaatacctaattaaaaggaatatttaatgcgaaaaaaagtttaattagagggatttatagggcattagaagctttataaagagtaatcatatcgctcaatccgctctgagaagaaagtactttttattcactaccctactgctcttgtaaccttatctcaagaagagaaaaatggtaaaacgttgtaaatatttttcacaagcacaacaaccacgtaatcatctgtttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaatcaaccgtgtttttgagtatttttcttgagcataaaagagaaaacaagctcactcaaaacatcaaacgtttctctaaatacaacgagaaccaaccataagcacctactcg Predict ORF larger than 30AA ================================================ Protein_Len: 31 Strand: + Start: 37 End: 129 .................................... M R V C L I F Q D F I Q P M K L S I C K D T K K Y L I K R N I .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 33 Strand: + Start: 277 End: 375 .................................................................................................................................................................................................................................................................................... M V K R C K Y F S Q A Q Q P R N H L F I N A L Q N L L F C I P K A .................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 296 End: 490 ....................................................................................................................................................................................................................................................................................................... M F H K H N N H V I I C L S T H C K T Y C F A F Q K R R F C T V K V A L L H R K T Y A F A M S K R S Y H F L T M L S L Q ................................................................................................. Protein_Len: 60 Strand: + Start: 382 End: 573 ............................................................................................................................................................................................................................................................................................................................................................................................. M H G K S G A F A S Q N L R F R N V K A Q L S L F N N V I F T K S T V F L S I F L E H K R E N K L T Q N I K R F S K Y N .............. Protein_Len: 30 Strand: - Start: 481 End: 570 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ G H K Q T N K K L M F S F V L E S L V D F T E R F V V L V M ................. Protein_Len: 60 Strand: - Start: 327 End: 530 ...................................................................................................................................................................................................................................................................................................................................... R N N Q M G F A Y T K C P L L P A K A D C F R R K R L T L A C N D S K L L T I K V F D V T N K L I K R S C L L S F L S M ......................................................... ttttatttgattctccttgttcttttgcgatagttcctgcgagtatgcctaatctttcaagatttcatacaacctatgaaactatctatttgcaaagatacgaaaaaatacctaattaaaaggaatatttaatgcgaaaaaaagtttaattagagggatttatagggcattagaagctttataaagagtaatcatatcgctcaatccgctctgagaagaaagtactttttattcactaccctactgctcttgtaaccttatctcaagaagagaaaaatggtaaaacgttgtaaatatttttcacaagcacaacaaccacgtaatcatctgtttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaatcaaccgtgtttttgagtatttttcttgagcataaaagagaaaacaagctcactcaaaacatcaaacgtttctctaaatacaacgagaaccaaccataagcacctactcg Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ttttatttgattctccttgttcttttgcgatagttcctgcgagtatgcctaatctttcaagatttcatacaacctatgaaactatctatttgcaaagatacgaaaaaatacctaattaaaaggaatatttaatgcgaaaaaaagtttaattagagggatttatagggcattagaagctttataaagagtaatcatatcgctcaatccgctctgagaagaaagtactttttattcactaccctactgctcttgtaaccttatctcaagaagagaaaaatggtaaaacgttgtaaatatttttcacaagcacaacaaccacgtaatcatctgtttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaatcaaccgtgtttttgagtatttttcttgagcataaaagagaaaacaagctcactcaaaacatcaaacgtttctctaaatacaacgagaaccaaccataagcacctactcg Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 49 HP_score: -4.7 Tail_Score: -2.50821 Start: 63 End: 81 Full_Region: CCTAATCTTTCAAGA TTTCATA CAACC TATGAAA CTATCTATTTGCAAA ..............................................................TTTCATACAACCTATGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 52 HP_score: -4.7 Tail_Score: -3.04322 Start: 63 End: 81 Full_Region: tttgcaaatagatag tttcata ggttg tatgaaa tcttgaaagattagg ..............................................................tttcataggttgtatgaaa.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 45 HP_score: -3.3 Tail_Score: -3.14564 Start: 339 End: 369 Full_Region: caaaacctacgcttt tggaatgcaaaac aatag gttttgcaatgcg ttgataaacagatga ..................................................................................................................................................................................................................................................................................................................................................tggaatgcaaaacaataggttttgcaatgcg.......................................................................................................................................................................................................................... TransTerm Strand: - Conf: 49 HP_score: -4.9 Tail_Score: -2.56596 Start: 343 End: 365 Full_Region: acctacgcttttgga atgcaaaac aatag gttttgcaa tgcgttgataaacag ......................................................................................................................................................................................................................................................................................................................................................atgcaaaacaataggttttgcaa.............................................................................................................................................................................................................................. TransTerm Strand: + Conf: 100 HP_score: -15.6 Tail_Score: -3.59262 Start: 373 End: 423 Full_Region: TTTTGCATTCCAAAA GCGTAGGTTTTGCACGGTAAAAGT GGC GCTTTTGCATCGCAAAACCTACGC TTTCGCAATGTCAAA ....................................................................................................................................................................................................................................................................................................................................................................................GCGTAGGTTTTGCACGGTAAAAGTGGCGCTTTTGCATCGCAAAACCTACGC.................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -14.9 Tail_Score: -4.13767 Start: 373 End: 423 Full_Region: tttgacattgcgaaa gcgtaggttttgcgatgcaaaag cgcca cttttaccgtgcaaaacctacgc ttttggaatgcaaaa ....................................................................................................................................................................................................................................................................................................................................................................................gcgtaggttttgcgatgcaaaagcgccacttttaccgtgcaaaacctacgc.................................................................................................................................................................... Find igs database================================================ Query_seq: PI1909:PI1910|PI1909:PI1910:DNA gyrase, B subunit:hypothetical protein:->->:1855331..1855917 587 ttttatttgattctccttgttcttttgcgatagttcctgcgagtatgcctaatctttcaagatttcatacaacctatgaaactatctatttgcaaagatacgaaaaaatacctaattaaaaggaatatttaatgcgaaaaaaagtttaattagagggatttatagggcattagaagctttataaagagtaatcatatcgctcaatccgctctgagaagaaagtactttttattcactaccctactgctcttgtaaccttatctcaagaagagaaaaatggtaaaacgttgtaaatatttttcacaagcacaacaaccacgtaatcatctgtttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaatcaaccgtgtttttgagtatttttcttgagcataaaagagaaaacaagctcactcaaaacatcaaacgtttctctaaatacaacgagaaccaaccataagcacctactcg Intra-Species Hit: Count: 46 Min: 1 Max: 587 Len: 587 Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 0.0 bit: 1122.0 Len: 587 Query Start:1 Query End:587 Subject Strand: POSITIVE Subject Start: 1 Subject End: 587 ttttatttgattctccttgttcttttgcgatagttcctgcgagtatgcctaatctttcaagatttcatacaacctatgaaactatctatttgcaaagatacgaaaaaatacctaattaaaaggaatatttaatgcgnnnnnnngtttaattagagggatttatagggcattagaagctttataaagagtaatcatatcgctcaatccgctctgagaagaaagtactttttattcactaccctactgctcttgtaaccttatctcaagaagagaaaaatggtaaaacgttgtaaatatttttcacaagcacaacaaccacgtaatcatctgtttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaatcaaccgtgtttttgagtatttttcttgagcataaaagagaaaacaagctcactcaaaacatcaaacgtttctctaaatacaacgagaaccaaccataagcacctactcg ttttatttgattctccttgttcttttgcgatagttcctgcgagtatgcctaatctttcaagatttcatacaacctatgaaactatctatttgcaaagatacgaaaaaatacctaattaaaaggaatatttaatgcgaaaaaaagtttaattagagggatttatagggcattagaagctttataaagagtaatcatatcgctcaatccgctctgagaagaaagtactttttattcactaccctactgctcttgtaaccttatctcaagaagagaaaaatggtaaaacgttgtaaatatttttcacaagcacaacaaccacgtaatcatctgtttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaatcaaccgtgtttttgagtatttttcttgagcataaaagagaaaacaagctcactcaaaacatcaaacgtttctctaaatacaacgagaaccaaccataagcacctactcg Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 2.0E-45 bit: 184.0 Len: 189 Query Start:289 Query End:477 Subject Strand: NEGATIVE Subject Start: 79 Subject End: 267 ................................................................................................................................................................................................................................................................................................tgtaaatatttttcacaagcacaacaaccacgtaatcatctgtttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaa.............................................................................................................. ................................................................................................................................................................................................................................................................................................tgtaaatatttttcacaagcaccactattaaataacaatctgtgtatcaacacattacaaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcatcgcaaaacagccgctttcgcaatgccaaagcgcaattaccacttttcaacgaaattatctttacaaaa.............................................................................................................. Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 2.0E-45 bit: 184.0 Len: 145 Query Start:332 Query End:476 Subject Strand: POSITIVE Subject Start: 164 Subject End: 308 ...........................................................................................................................................................................................................................................................................................................................................ttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaa............................................................................................................... ...........................................................................................................................................................................................................................................................................................................................................ttatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa............................................................................................................... Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 4.0E-41 bit: 170.0 Len: 114 Query Start:343 Query End:456 Subject Strand: NEGATIVE Subject Start: 165 Subject End: 278 ......................................................................................................................................................................................................................................................................................................................................................ttgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcacttttt................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................................ttgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgtcaaatcgaaattatcatttttt................................................................................................................................... Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 5.0E-40 bit: 167.0 Len: 144 Query Start:334 Query End:477 Subject Strand: POSITIVE Subject Start: 166 Subject End: 309 .............................................................................................................................................................................................................................................................................................................................................atcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaa.............................................................................................................. .............................................................................................................................................................................................................................................................................................................................................atcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaa.............................................................................................................. Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 9.0E-39 bit: 163.0 Len: 142 Query Start:336 Query End:477 Subject Strand: NEGATIVE Subject Start: 201 Subject End: 341 ...............................................................................................................................................................................................................................................................................................................................................caacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaa.............................................................................................................. ...............................................................................................................................................................................................................................................................................................................................................caacgcattacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgc-aaacagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa.............................................................................................................. Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 3.0E-38 bit: 161.0 Len: 133 Query Start:347 Query End:479 Subject Strand: NEGATIVE Subject Start: 139 Subject End: 271 ..........................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaatc............................................................................................................ ..........................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaagagaattatctttacaaaatc............................................................................................................ Subject: pint_PI1441_PI1442|hypothetical protein:radical-activating enzyme (pyruvate-formate lyase-activating enzyme)|POSITIVE:POSITIVE|[1363734,1364088]|355 HSP 1 e-value: 5.0E-37 bit: 157.0 Len: 107 Query Start:332 Query End:438 Subject Strand: POSITIVE Subject Start: 71 Subject End: 177 ...........................................................................................................................................................................................................................................................................................................................................ttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaa..................................................................................................................................................... ...........................................................................................................................................................................................................................................................................................................................................ttatcaacgctttacaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgctttcgcaacgtcaaa..................................................................................................................................................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 3.0E-35 bit: 151.0 Len: 104 Query Start:355 Query End:458 Subject Strand: POSITIVE Subject Start: 199 Subject End: 302 ..................................................................................................................................................................................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaa................................................................................................................................. ..................................................................................................................................................................................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaa................................................................................................................................. Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 3.0E-35 bit: 151.0 Len: 144 Query Start:333 Query End:476 Subject Strand: NEGATIVE Subject Start: 480 Subject End: 623 ............................................................................................................................................................................................................................................................................................................................................tatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaa............................................................................................................... ............................................................................................................................................................................................................................................................................................................................................tatcaacgcattacaaaacctattgttttgcattccaaaagcggctgttttgcatggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacagaattatctttacaaa............................................................................................................... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 1.0E-34 bit: 149.0 Len: 147 Query Start:335 Query End:481 Subject Strand: NEGATIVE Subject Start: 187 Subject End: 333 ..............................................................................................................................................................................................................................................................................................................................................tcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaatcaa.......................................................................................................... ..............................................................................................................................................................................................................................................................................................................................................tcaatgcattacaaaatctattgttttgcgtcctaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgtaaaacagccgctttcgcaacgtcaaagtgcagttatcactttttaacgaaattatctttacaaaatcaa.......................................................................................................... Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 3.0E-32 bit: 141.0 Len: 127 Query Start:332 Query End:458 Subject Strand: NEGATIVE Subject Start: 120 Subject End: 246 ...........................................................................................................................................................................................................................................................................................................................................ttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaa................................................................................................................................. ...........................................................................................................................................................................................................................................................................................................................................ttatcaacgcattgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaa................................................................................................................................. Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 1.0E-31 bit: 139.0 Len: 146 Query Start:332 Query End:477 Subject Strand: POSITIVE Subject Start: 82 Subject End: 227 ...........................................................................................................................................................................................................................................................................................................................................ttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaa.............................................................................................................. ...........................................................................................................................................................................................................................................................................................................................................ttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaa.............................................................................................................. Subject: pint_PI0854_PI0855|MiaB-like tRNA modifying enzyme:hypothetical protein|POSITIVE:POSITIVE|[788060,789233]|1174 HSP 1 e-value: 5.0E-31 bit: 137.0 Len: 105 Query Start:327 Query End:431 Subject Strand: NEGATIVE Subject Start: 787 Subject End: 891 ......................................................................................................................................................................................................................................................................................................................................tctgtttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaa............................................................................................................................................................ ......................................................................................................................................................................................................................................................................................................................................tctgtttatcaacatattataaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgttgcaaaacctacgctttcgcaa............................................................................................................................................................ Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 5.0E-31 bit: 137.0 Len: 145 Query Start:334 Query End:478 Subject Strand: POSITIVE Subject Start: 292 Subject End: 436 .............................................................................................................................................................................................................................................................................................................................................atcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaat............................................................................................................. .............................................................................................................................................................................................................................................................................................................................................atcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaat............................................................................................................. Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 8.0E-30 bit: 133.0 Len: 135 Query Start:343 Query End:477 Subject Strand: NEGATIVE Subject Start: 114 Subject End: 248 ......................................................................................................................................................................................................................................................................................................................................................ttgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaa.............................................................................................................. ......................................................................................................................................................................................................................................................................................................................................................ttgcaaaacctattgttttgcattccaaaagcggctgttttgcacgctaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcgctttttaacagaataatctttacaaaa.............................................................................................................. Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 3.0E-29 bit: 131.0 Len: 114 Query Start:346 Query End:459 Subject Strand: NEGATIVE Subject Start: 205 Subject End: 318 .........................................................................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaac................................................................................................................................ .........................................................................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcgtaggttttacacgataaaagcggctgttttgcgttgcaaaacagccactttcgcaatgtcaaagcgcagttattactttttaac................................................................................................................................ Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 1.0E-28 bit: 129.0 Len: 145 Query Start:334 Query End:478 Subject Strand: NEGATIVE Subject Start: 110 Subject End: 254 .............................................................................................................................................................................................................................................................................................................................................atcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaat............................................................................................................. .............................................................................................................................................................................................................................................................................................................................................atcaacgcattataaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcagtttttaacagaattatctttacaaaat............................................................................................................. Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 1.0E-28 bit: 129.0 Len: 149 Query Start:329 Query End:477 Subject Strand: POSITIVE Subject Start: 134 Subject End: 282 ........................................................................................................................................................................................................................................................................................................................................tgtttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaa.............................................................................................................. ........................................................................................................................................................................................................................................................................................................................................tgtttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa.............................................................................................................. Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 1.0E-28 bit: 129.0 Len: 145 Query Start:332 Query End:476 Subject Strand: NEGATIVE Subject Start: 310 Subject End: 454 ...........................................................................................................................................................................................................................................................................................................................................ttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaa............................................................................................................... ...........................................................................................................................................................................................................................................................................................................................................ttatcaacgcattacaagacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaaagaaattatctttacaaa............................................................................................................... Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 5.0E-28 bit: 127.0 Len: 132 Query Start:346 Query End:477 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 181 .........................................................................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaa.............................................................................................................. .........................................................................................................................................................................................................................................................................................................................................................caaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaacggaattatctttacaaaa.............................................................................................................. Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 2.0E-27 bit: 125.0 Len: 131 Query Start:346 Query End:476 Subject Strand: NEGATIVE Subject Start: 149 Subject End: 279 .........................................................................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaa............................................................................................................... .........................................................................................................................................................................................................................................................................................................................................................caaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcggttatcactttttaacggaattatctttacaaa............................................................................................................... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 2.0E-27 bit: 125.0 Len: 131 Query Start:346 Query End:476 Subject Strand: NEGATIVE Subject Start: 60 Subject End: 190 .........................................................................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaa............................................................................................................... .........................................................................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattctaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttgtcactttttaacagaattatctttacaaa............................................................................................................... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 2.0E-27 bit: 125.0 Len: 139 Query Start:339 Query End:477 Subject Strand: NEGATIVE Subject Start: 166 Subject End: 304 ..................................................................................................................................................................................................................................................................................................................................................cgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaa.............................................................................................................. ..................................................................................................................................................................................................................................................................................................................................................cgcattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaacagccgctttcgcaatgtcaaaacgcagttatcaatttttaagagaattatctttacaaaa.............................................................................................................. Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 7.0E-27 bit: 123.0 Len: 130 Query Start:347 Query End:476 Subject Strand: NEGATIVE Subject Start: 200 Subject End: 329 ..........................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaa............................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcgttccaaaaacggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaacggaattatctttacaaa............................................................................................................... Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 3.0E-26 bit: 121.0 Len: 189 Query Start:289 Query End:477 Subject Strand: POSITIVE Subject Start: 40 Subject End: 228 ................................................................................................................................................................................................................................................................................................tgtaaatatttttcacaagcacaacaaccacgtaatcatctgtttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaa.............................................................................................................. ................................................................................................................................................................................................................................................................................................tgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaa.............................................................................................................. Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 3.0E-26 bit: 121.0 Len: 113 Query Start:347 Query End:459 Subject Strand: NEGATIVE Subject Start: 129 Subject End: 241 ..........................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaac................................................................................................................................ ..........................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggttgttttgcatcgtaaaacagctgcttttgcaatgtcaaaaggcagttatcactttttaac................................................................................................................................ Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 1.0E-25 bit: 119.0 Len: 144 Query Start:334 Query End:477 Subject Strand: POSITIVE Subject Start: 82 Subject End: 225 .............................................................................................................................................................................................................................................................................................................................................atcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaa.............................................................................................................. .............................................................................................................................................................................................................................................................................................................................................atcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa.............................................................................................................. Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 1.0E-25 bit: 119.0 Len: 144 Query Start:333 Query End:476 Subject Strand: POSITIVE Subject Start: 373 Subject End: 516 ............................................................................................................................................................................................................................................................................................................................................tatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaa............................................................................................................... ............................................................................................................................................................................................................................................................................................................................................tatcaacgcattacaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaacagccgctttcgcaatgccaaatcgaaattatcatttttcatcagaattatctttacaaa............................................................................................................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 1.0E-25 bit: 119.0 Len: 132 Query Start:346 Query End:477 Subject Strand: NEGATIVE Subject Start: 146 Subject End: 277 .........................................................................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaa.............................................................................................................. .........................................................................................................................................................................................................................................................................................................................................................caaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcattttttaagagaattatctttacaaaa.............................................................................................................. Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 1.0E-25 bit: 119.0 Len: 124 Query Start:332 Query End:455 Subject Strand: POSITIVE Subject Start: 92 Subject End: 215 ...........................................................................................................................................................................................................................................................................................................................................ttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttt.................................................................................................................................... ...........................................................................................................................................................................................................................................................................................................................................ttatcaacacattgcaaaacctattgttttgcattccaaaagcgtaggttttacacggcaaaagcggctgttttgcgttgcaaaacagccgctttcgcaatgccaaatcgaaattatcattttt.................................................................................................................................... Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 5.0E-25 bit: 117.0 Len: 131 Query Start:346 Query End:476 Subject Strand: POSITIVE Subject Start: 254 Subject End: 384 .........................................................................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaa............................................................................................................... .........................................................................................................................................................................................................................................................................................................................................................caaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa............................................................................................................... Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 2.0E-24 bit: 115.0 Len: 134 Query Start:325 Query End:458 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 366 ....................................................................................................................................................................................................................................................................................................................................catctgtttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaa................................................................................................................................. ....................................................................................................................................................................................................................................................................................................................................catctgttcatcagtgtattacaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcatcgtcaaaacgcagttatcactttttaa................................................................................................................................. Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 2.0E-24 bit: 115.0 Len: 126 Query Start:334 Query End:459 Subject Strand: NEGATIVE Subject Start: 186 Subject End: 311 .............................................................................................................................................................................................................................................................................................................................................atcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaac................................................................................................................................ .............................................................................................................................................................................................................................................................................................................................................atcagcgcattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaatgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaac................................................................................................................................ Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 1.0E-22 bit: 109.0 Len: 107 Query Start:332 Query End:438 Subject Strand: POSITIVE Subject Start: 73 Subject End: 179 ...........................................................................................................................................................................................................................................................................................................................................ttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaa..................................................................................................................................................... ...........................................................................................................................................................................................................................................................................................................................................ttatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaa..................................................................................................................................................... Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 4.0E-22 bit: 107.0 Len: 146 Query Start:355 Query End:500 Subject Strand: NEGATIVE Subject Start: 203 Subject End: 348 ..................................................................................................................................................................................................................................................................................................................................................................ttgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaatcaaccgtgtttttgagtatttt....................................................................................... ..................................................................................................................................................................................................................................................................................................................................................................ttgttttgcgttccaaaagcggctgttttgcaaggtaaaagagccgcttttggcgtgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatttttacaaaagcagaagtgtttttcagtatttt....................................................................................... Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 2.0E-21 bit: 105.0 Len: 113 Query Start:347 Query End:459 Subject Strand: POSITIVE Subject Start: 111 Subject End: 223 ..........................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaac................................................................................................................................ ..........................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaac................................................................................................................................ Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 7.0E-21 bit: 103.0 Len: 108 Query Start:331 Query End:438 Subject Strand: NEGATIVE Subject Start: 152 Subject End: 259 ..........................................................................................................................................................................................................................................................................................................................................tttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaa..................................................................................................................................................... ..........................................................................................................................................................................................................................................................................................................................................tttatcaacgcattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaa..................................................................................................................................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 7.0E-21 bit: 103.0 Len: 156 Query Start:335 Query End:490 Subject Strand: NEGATIVE Subject Start: 78 Subject End: 233 ..............................................................................................................................................................................................................................................................................................................................................tcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaatcaaccgtgtttt................................................................................................. ..............................................................................................................................................................................................................................................................................................................................................tcaacgtattgcaaaacctattgttttgcactccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgttttcgcaatgtcaaatcgaaattattactttttaaagaaattatctttacaaaagcaaaggtgtttt................................................................................................. Subject: pint_PI1937_PI1938|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1891147,1891993]|847 HSP 1 e-value: 3.0E-20 bit: 101.0 Len: 115 Query Start:346 Query End:460 Subject Strand: NEGATIVE Subject Start: 519 Subject End: 633 .........................................................................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaaca............................................................................................................................... .........................................................................................................................................................................................................................................................................................................................................................caaagcctattgttttacgttctaaaagcgtaggttttgcaaggtaaaagcggctcttttggcgtgcaaaagttacgctttcgcaacgccaaagcgcagttatcgctttttaaca............................................................................................................................... Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 1.0E-19 bit: 99.6 Len: 138 Query Start:341 Query End:478 Subject Strand: POSITIVE Subject Start: 691 Subject End: 828 ....................................................................................................................................................................................................................................................................................................................................................cattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaat............................................................................................................. ....................................................................................................................................................................................................................................................................................................................................................cattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaat............................................................................................................. Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 4.0E-19 bit: 97.6 Len: 113 Query Start:326 Query End:438 Subject Strand: NEGATIVE Subject Start: 254 Subject End: 366 .....................................................................................................................................................................................................................................................................................................................................atctgtttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaa..................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................atctgtatatcaacgtattgtaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgccaaa..................................................................................................................................................... Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 2.0E-18 bit: 95.6 Len: 144 Query Start:334 Query End:477 Subject Strand: NEGATIVE Subject Start: 185 Subject End: 328 .............................................................................................................................................................................................................................................................................................................................................atcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaa.............................................................................................................. .............................................................................................................................................................................................................................................................................................................................................atcaacgccttacaaaacctattgtttcgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcacaaaagagccgctttcgcaacgccaaagcgcagttatcaatttttaagagaattatctttacaaaa.............................................................................................................. Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 7.0E-18 bit: 93.7 Len: 107 Query Start:332 Query End:438 Subject Strand: NEGATIVE Subject Start: 180 Subject End: 286 ...........................................................................................................................................................................................................................................................................................................................................ttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaa..................................................................................................................................................... ...........................................................................................................................................................................................................................................................................................................................................ttatcaacgcaatgcaaaacctattgttttgcattgtaaaagcgtaggttttacacggtcaaagcggctgttttgcgatgcaaaacagccgctttcgcaatgccaaa..................................................................................................................................................... Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 3.0E-17 bit: 91.7 Len: 118 Query Start:342 Query End:459 Subject Strand: NEGATIVE Subject Start: 274 Subject End: 391 .....................................................................................................................................................................................................................................................................................................................................................attgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaac................................................................................................................................ .....................................................................................................................................................................................................................................................................................................................................................attgcaaaacctacgcttttgcgttccaaaagcggctgttttgtacggtaaaagcgtaggttttgcatcgcaaaagaaccgctttcgcaacgttaaagcgcagttatcactttttaac................................................................................................................................ Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 4.0E-13 bit: 77.8 Len: 123 Query Start:333 Query End:455 Subject Strand: POSITIVE Subject Start: 397 Subject End: 519 ............................................................................................................................................................................................................................................................................................................................................tatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttt.................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................tatcaacgtgttacaaaacctattgttttgcattccaaaagcggctgttttgcacggcaaaagcgtaggttttacctcgcaaaacagccgctttcgcaacgtcaaaacgaaattatcaatttt.................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUUAUUUGAUUCUCCUUGUUCUUUUGCGAUAGUUCCUGCGAGUAUGCCUAAUCUUUCAAGAUUUCAUACAACCUAUGAAACUAUCUAUUUGCAAAGAUACGAAAAAAUACCUAAUUAAAAGGAAUAUUUAAUGCGAAAAAAAGUUUAAUUAGAGGGAUUUAUAGGGCAUUAGAAGCUUUAUAAAGAGUAAUCAUAUCGCUCAAUCCGCUCUGAGAAGAAAGUACUUUUUAUUCACUACCCUACUGCUCUUGUAACCUUAUCUCAAGAAGAGAAAAAUGGUAAAACGUUGUAAAUAUUUUUCACAAGCACAACAACCACGUAAUCAUCUGUUUAUCAACGCAUUGCAAAACCUAUUGUUUUGCAUUCCAAAAGCGUAGGUUUUGCACGGUAAAAGUGGCGCUUUUGCAUCGCAAAACCUACGCUUUCGCAAUGUCAAAGCGCAGUUAUCACUUUUUAACAAUGUUAUCUUUACAAAAUCAACCGUGUUUUUGAGUAUUUUUCUUGAGCAUAAAAGAGAAAACAAGCUCACUCAAAACAUCAAACGUUUCUCUAAAUACAACGAGAACCAACCAUAAGCACCUACUCG .((((((((.(((((.((((..(((((((.((((((((....(((((...(((((....))))).)))))............(((((........)))))....................))))))...)).)))))))..........((((((..((((((((((((.(((.......((((((((((.........((((........)))).......))))))))))........))).))).)))))))..(((((((((((((((...((((......))))..........((((.((((((.............................((..((((((((.....)))))))).....((((((((((((((((...(((((((.....)))))))...)))))))))))))))).))..(((.((((.(((((((........))))..)))...))))))).........)))))).))))..))))))))))).))))..(((........)))................))..))))))..)))).))))).)))..))))).......... (-133.85) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CGAGUAGGUGCUUAUGGUUGGUUCUCGUUGUAUUUAGAGAAACGUUUGAUGUUUUGAGUGAGCUUGUUUUCUCUUUUAUGCUCAAGAAAAAUACUCAAAAACACGGUUGAUUUUGUAAAGAUAACAUUGUUAAAAAGUGAUAACUGCGCUUUGACAUUGCGAAAGCGUAGGUUUUGCGAUGCAAAAGCGCCACUUUUACCGUGCAAAACCUACGCUUUUGGAAUGCAAAACAAUAGGUUUUGCAAUGCGUUGAUAAACAGAUGAUUACGUGGUUGUUGUGCUUGUGAAAAAUAUUUACAACGUUUUACCAUUUUUCUCUUCUUGAGAUAAGGUUACAAGAGCAGUAGGGUAGUGAAUAAAAAGUACUUUCUUCUCAGAGCGGAUUGAGCGAUAUGAUUACUCUUUAUAAAGCUUCUAAUGCCCUAUAAAUCCCUCUAAUUAAACUUUUUUUCGCAUUAAAUAUUCCUUUUAAUUAGGUAUUUUUUCGUAUCUUUGCAAAUAGAUAGUUUCAUAGGUUGUAUGAAAUCUUGAAAGAUUAGGCAUACUCGCAGGAACUAUCGCAAAAGAACAAGGAGAAUCAAAUAAAA .((((....))))....(((((((((.((((.............(((((((((((...(((((................)))))...)))))).)))))....(..(((..((((((((((((((...(((((((.(..(((((..((...(((((((.(((((((((((((((((((....(((((.....)))))....)))))))))))))))))))...((((((((.....))))))))....(((....))).)))).)))))..)))))..)...(((((((((..((((....((...(((.....((((.....))))...))).))..(((.((.((((((.(........).)))))))).))).(((.(((((((((..(((((.......)))))..)))).............))))))))....))))...)))))))))...........)))))))...)).........))))))))))))..(((((((((....((.(((((.(((((....)))))...)))))..)).))))))))).)))..).)))).)))))))))...... (-153.20) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 865 399 351 208 160 pint:PI0561|5end_hypothetical_protein_508952..509182_POSITIVE 865 399 351 162 114 pint:PI0211|5end_hypothetical_protein_204067..204297_POSITIVE 865 399 351 181 133 pint:PI0196|5end_hypothetical_protein_188435..188665_POSITIVE 865 399 351 53 5 pint:PI0037|5end_hypothetical_protein_39354..39584_POSITIVE 857 420 371 74 25 pint:PI1702|5end_hypothetical_protein_1620587..1620817_POSITIVE 813 410 361 191 142 pint:PI1437|5end_hypothetical_protein_1356088..1356318_POSITIVE 813 410 361 64 15 pint:PI1436|5end_hypothetical_protein_1355961..1356191_POSITIVE 810 399 351 115 67 pint:PI1371|5end_hypothetical_protein_1292359..1292589_POSITIVE 746 470 421 164 115 pint:PI0867|5end_hypothetical_protein_803859..804089_POSITIVE 746 470 421 81 32 pint:PI0866|5end_hypothetical_protein_803776..804006_POSITIVE 742 389 341 190 142 pint:PI0653|5end_hypothetical_protein_596046..596276_POSITIVE 725 430 381 84 35 pint:PI0926|5end_hypothetical_protein_856824..857054_POSITIVE 724 390 342 204 156 pint:PI1333|5end_conserved_hypothetical_protein_1250777..1251007_POSITIVE 723 450 402 85 37 pint:PI0089|5end_hypothetical_protein_88162..88392_POSITIVE 710 390 343 191 144 pint:PI0887|5end_hypothetical_protein_817536..817766_POSITIVE 709 430 381 112 63 pint:PI1760|5end_hypothetical_protein_1684413..1684643_POSITIVE 706 450 402 52 4 pint:PI1064|5end_hypothetical_protein_983071..983301_POSITIVE 695 390 342 177 129 pint:PI2046|5end_hypothetical_protein_1999030..1999260_POSITIVE 694 390 341 217 168 pint:PI2024|5end_hypothetical_protein_1978804..1979034_POSITIVE 689 450 402 85 37 pint:PI0568|5end_hypothetical_protein_512950..513180_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 894 450 401 137 88 pint:PI0560|3end_hypothetical_protein_508910..509060_POSITIVE 865 399 351 108 60 pint:PI0905|3end_hypothetical_protein_834697..834847_POSITIVE 752 398 351 151 104 pint:PI0659|3end_hypothetical_protein_603396..603546_POSITIVE 732 399 351 108 60 pint:PI1521|3end_hypothetical_protein_1441461..1441611_POSITIVE 710 390 343 138 91 pint:PI1797|3end_hypothetical_protein_1731559..1731709_POSITIVE 710 390 343 138 91 pint:PI0885|3end_hypothetical_protein_817563..817713_POSITIVE 710 390 343 138 91 pint:PI0866|3end_hypothetical_protein_803993..804143_POSITIVE 710 390 343 138 91 pint:PI0820|3end_hypothetical_protein_759980..760130_POSITIVE 710 390 343 77 30 pint:PI0819|3end_hypothetical_protein_759919..760069_POSITIVE 710 390 343 138 91 pint:PI0089|3end_hypothetical_protein_88355..88505_POSITIVE 695 390 342 126 78 pint:PI0081|3end_hypothetical_protein_80700..80850_POSITIVE 689 450 402 110 62 pint:PI0567|3end_hypothetical_protein_513055..513205_POSITIVE 686 397 351 133 87 pint:PI0815|3end_hypothetical_protein_754677..754827_POSITIVE 686 397 351 133 87 pint:PI0095|3end_hypothetical_protein_91850..92000_POSITIVE 678 389 341 137 89 pint:PI1041|3end_hypothetical_protein_960675..960825_POSITIVE 676 390 343 138 91 pint:PI0118|3end_hypothetical_protein_111640..111790_POSITIVE 674 390 341 138 89 pint:PI1005|3end_hypothetical_protein_926481..926631_POSITIVE 656 375 332 150 107 pint:PI2023|3end_hypothetical_protein_1978832..1978982_POSITIVE 650 390 342 143 95 pint:PI1294|3end_hypothetical_protein_1208716..1208866_POSITIVE 637 375 331 150 106 pint:PI1308|3end_hypothetical_protein_1223717..1223867_POSITIVE