Origin IGS: ttcgtactgaagtgttttagagatttcgaatgcttcgaactctcctattcgcattacgttgttacggaaaaggagacggtttgtctggtagtccttgtcgcggatttctgccatgtactggtttacaatggagttctgttccgagaagttaatgatttccattttttctttttatagtatggttaaattggggtcatagtttttatgcacccaaaattgtggcaaaattaagaaaatagtttattatttgcaacgtctgaatagcaaatatctgccaacaataatattttttatattctttaaccttgcaaatgtcttattgctgcattttttatatctatcattttgcattacatcataaaattattacctttgcggtgttattttaaggtaaagttgttacaagatacggaattaatttcaacatttatataatatttacaaatggcaaaatttgataagagcgtactcgccaattatggcattacaggcgcaaaagaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ttcttttgcgcctgtaatgccataattggcgagtacgctcttatcaaattttgccatttgtaaatattatataaatgttgaaattaattccgtatcttgtaacaactttaccttaaaataacaccgcaaaggtaataattttatgatgtaatgcaaaatgatagatataaaaaatgcagcaataagacatttgcaaggttaaagaatataaaaaatattattgttggcagatatttgctattcagacgttgcaaataataaactattttcttaattttgccacaattttgggtgcataaaaactatgaccccaatttaaccatactataaaaagaaaaaatggaaatcattaacttctcggaacagaactccattgtaaaccagtacatggcagaaatccgcgacaaggactaccagacaaaccgtctccttttccgtaacaacgtaatgcgaataggagagttcgaagcattcgaaatctctaaaacacttcagtacgaa Mask Tandem Repeat Region ================================================ ttcgtactgaagtgttttagagatttcgaatgcttcgaactctcctattcgcattacgttgttacggaaaaggagacggtttgtctggtagtccttgtcgcggatttctgccatgtactggtttacaatggagttctgttccgagaagttaatgatttccattttttctttttatagtatggttaaattggggtcatagtttttatgcacccaaaattgtggcaaaattaagaaaatagtttattatttgcaacgtctgaatagcaaatatctgccaacaataatattttttatattctttaaccttgcaaatgtcttattgctgcattttttatatctatcattttgcattacatcataaaattattacctttgcggtgttattttaaggtaaagttgttacaagatacggaattaatttcaacatttatataatatttacaaatggcaaaatttgataagagcgtactcgccaattatggcattacaggcgcaaaagaa Find is-nt database================================================ Query_seq: PI1879:PI1880|PI1879:PI1880:uracil phosphoribosyltransferase:phosphoenolpyruvate carboxykinase (ATP):->->:1821306..1821806 501 ttcgtactgaagtgttttagagatttcgaatgcttcgaactctcctattcgcattacgttgttacggaaaaggagacggtttgtctggtagtccttgtcgcggatttctgccatgtactggtttacaatggagttctgttccgagaagttaatgatttccattttttctttttatagtatggttaaattggggtcatagtttttatgcacccaaaattgtggcaaaattaagaaaatagtttattatttgcaacgtctgaatagcaaatatctgccaacaataatattttttatattctttaaccttgcaaatgtcttattgctgcattttttatatctatcattttgcattacatcataaaattattacctttgcggtgttattttaaggtaaagttgttacaagatacggaattaatttcaacatttatataatatttacaaatggcaaaatttgataagagcgtactcgccaattatggcattacaggcgcaaaagaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1879:PI1880|PI1879:PI1880:uracil phosphoribosyltransferase:phosphoenolpyruvate carboxykinase (ATP):->->:1821306..1821806 501 ttcgtactgaagtgttttagagatttcgaatgcttcgaactctcctattcgcattacgttgttacggaaaaggagacggtttgtctggtagtccttgtcgcggatttctgccatgtactggtttacaatggagttctgttccgagaagttaatgatttccattttttctttttatagtatggttaaattggggtcatagtttttatgcacccaaaattgtggcaaaattaagaaaatagtttattatttgcaacgtctgaatagcaaatatctgccaacaataatattttttatattctttaaccttgcaaatgtcttattgctgcattttttatatctatcattttgcattacatcataaaattattacctttgcggtgttattttaaggtaaagttgttacaagatacggaattaatttcaacatttatataatatttacaaatggcaaaatttgataagagcgtactcgccaattatggcattacaggcgcaaaagaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1879:PI1880|PI1879:PI1880:uracil phosphoribosyltransferase:phosphoenolpyruvate carboxykinase (ATP):->->:1821306..1821806 501 ttcgtactgaagtgttttagagatttcgaatgcttcgaactctcctattcgcattacgttgttacggaaaaggagacggtttgtctggtagtccttgtcgcggatttctgccatgtactggtttacaatggagttctgttccgagaagttaatgatttccattttttctttttatagtatggttaaattggggtcatagtttttatgcacccaaaattgtggcaaaattaagaaaatagtttattatttgcaacgtctgaatagcaaatatctgccaacaataatattttttatattctttaaccttgcaaatgtcttattgctgcattttttatatctatcattttgcattacatcataaaattattacctttgcggtgttattttaaggtaaagttgttacaagatacggaattaatttcaacatttatataatatttacaaatggcaaaatttgataagagcgtactcgccaattatggcattacaggcgcaaaagaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 10 Min: 1 Max: 171 Len: 171 Subject: UniRef90_Q64MV5 Cluster: Uracil phosphoribosyltransferase; n=2; Bacteroides fragilis|Rep: Uracil phosphoribosyltransferase - Bacteroides fragilis HSP 1 e-value: 3.0E-9 bit: 63.5 Len: 159 Query Start:4 Query End:162 Subject Strand: null Subject Start: 1 Subject End: 53 ... M E I I N F S E Q N S I V N Q Y M A E I R D K D Y Q T N R L L F R N N V M R I G E F E A F E I S K T L Q Y ................................................................................................................................................................................................................................................................................................................................................... ... M K I I N L S E T D S I L N Q Y V S E I R N V E V Q N D R L R F R R N I E R I G E V M A Y E M S K T F A Y ................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q8A413 Cluster: Uracil phosphoribosyltransferase; n=1; Bacteroides thetaiotaomicron|Rep: Uracil phosphoribosyltransferase - Bacteroides thetaiotaomicron HSP 1 e-value: 4.0E-9 bit: 63.2 Len: 159 Query Start:4 Query End:162 Subject Strand: null Subject Start: 1 Subject End: 53 ... M E I I N F S E Q N S I V N Q Y M A E I R D K D Y Q T N R L L F R N N V M R I G E F E A F E I S K T L Q Y ................................................................................................................................................................................................................................................................................................................................................... ... M K V I D F S Q T N S I L N Q Y I S E I R N V E V Q N D R L R F R R N I E R I G E I M A Y E M S K E F R Y ................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A3J3A1 Cluster: Uracil phosphoribosyltransferase; n=1; Flavobacteria bacterium BAL38|Rep: Uracil phosphoribosyltransferase - Flavobacteria bacterium BAL38 HSP 1 e-value: 2.0E-8 bit: 60.5 Len: 162 Query Start:1 Query End:162 Subject Strand: null Subject Start: 1 Subject End: 54 M E I I N F S E Q N S I V N Q Y M A E I R D K D Y Q T N R L L F R N N V M R I G E F E A F E I S K T L Q Y E ................................................................................................................................................................................................................................................................................................................................................... M H I H Y I S E Q N S I L N H F L A Q I R D V N I Q K D S M R F R K N I E R I G E I M A Y E L S K T L E Y K ................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A4BXU0 Cluster: Uracil phosphoribosyltransferase; n=1; Polaribacter irgensii 23-P|Rep: Uracil phosphoribosyltransferase - Polaribacter irgensii 23-P HSP 1 e-value: 3.0E-7 bit: 56.6 Len: 162 Query Start:1 Query End:162 Subject Strand: null Subject Start: 1 Subject End: 54 M E I I N F S E Q N S I V N Q Y M A E I R D K D Y Q T N R L L F R N N V M R I G E F E A F E I S K T L Q Y E ................................................................................................................................................................................................................................................................................................................................................... M Q I H H I S E S N S I L N K F I A E I R D V T I Q K D S L R F R R N I E R I G E V L G Y E L S K N L S Y K ................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A0M1P3 Cluster: Uracil phosphoribosyltransferase; n=1; Gramella forsetii KT0803|Rep: Uracil phosphoribosyltransferase - Gramella forsetii (strain KT0803) HSP 1 e-value: 4.0E-7 bit: 56.2 Len: 162 Query Start:1 Query End:162 Subject Strand: null Subject Start: 1 Subject End: 54 M E I I N F S E Q N S I V N Q Y M A E I R D K D Y Q T N R L L F R N N V M R I G E F E A F E I S K T L Q Y E ................................................................................................................................................................................................................................................................................................................................................... M E V Q E I L K N N S I A N K F I S Q L R D T G I Q T D R M R F R R N I E R L G E I M A Y E L S K E L E Y Q ................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A2TY12 Cluster: Uracil phosphoribosyltransferase; n=1; Polaribacter dokdonensis MED152|Rep: Uracil phosphoribosyltransferase - Polaribacter dokdonensis MED152 HSP 1 e-value: 6.0E-7 bit: 55.8 Len: 159 Query Start:4 Query End:162 Subject Strand: null Subject Start: 1 Subject End: 53 ... M E I I N F S E Q N S I V N Q Y M A E I R D K D Y Q T N R L L F R N N V M R I G E F E A F E I S K T L Q Y ................................................................................................................................................................................................................................................................................................................................................... ... M K V H Y I G E N N S V L N S F I A E I R D K N I Q K D S L R F R R N I E R I G E I L S Y E L S K E L S Y ................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_A4AQT0 Cluster: Uracil phosphoribosyltransferase; n=1; Flavobacteriales bacterium HTCC2170|Rep: Uracil phosphoribosyltransferase - Flavobacteriales bacterium HTCC2170 HSP 1 e-value: 2.0E-6 bit: 54.3 Len: 162 Query Start:1 Query End:162 Subject Strand: null Subject Start: 7 Subject End: 60 M E I I N F S E Q N S I V N Q Y M A E I R D K D Y Q T N R L L F R N N V M R I G E F E A F E I S K T L Q Y E ................................................................................................................................................................................................................................................................................................................................................... M V V H H F E K E F S V L N R F I A E I R D V D I Q Q D P M R F R R N I E R I G E V L C Y E M S K T L N Y D ................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q1VRR3 Cluster: Uracil phosphoribosyltransferase; n=1; Psychroflexus torquis ATCC 700755|Rep: Uracil phosphoribosyltransferase - Psychroflexus torquis ATCC 700755 HSP 1 e-value: 2.0E-6 bit: 53.9 Len: 168 Query Start:4 Query End:171 Subject Strand: null Subject Start: 3 Subject End: 58 ... K E K M E I I N F S E Q N S I V N Q Y M A E I R D K D Y Q T N R L L F R N N V M R I G E F E A F E I S K T L Q Y .......................................................................................................................................................................................................................................................................................................................................... ... K K L M E V H N L S Q T H S V L N H F I H Q L R D E A V Q Q D R M K F R R N I E R I G E I L T Y E M S K A L T Y .......................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q1XUI0 Cluster: Phosphoribosyltransferase; n=1; Flavobacterium johnsoniae UW101|Rep: Phosphoribosyltransferase - Flavobacterium johnsoniae UW101 HSP 1 e-value: 8.0E-6 bit: 52.0 Len: 162 Query Start:1 Query End:162 Subject Strand: null Subject Start: 1 Subject End: 54 M E I I N F S E Q N S I V N Q Y M A E I R D K D Y Q T N R L L F R N N V M R I G E F E A F E I S K T L Q Y E ................................................................................................................................................................................................................................................................................................................................................... M K I H Y I S E N N S V L N H F L G Q I R N V N V Q N D S M R F R R N I E R I G E I M A Y E L S K I L P Y K ................................................................................................................................................................................................................................................................................................................................................... Subject: UniRef90_Q9ZNF8 Cluster: Uracil phosphoribosyltransferase; n=1; Porphyromonas gingivalis|Rep: Uracil phosphoribosyltransferase - Porphyromonas gingivalis (Bacteroides gingivalis) HSP 1 e-value: 8.0E-6 bit: 52.0 Len: 153 Query Start:10 Query End:162 Subject Strand: null Subject Start: 1 Subject End: 51 ......... M E I I N F S E Q N S I V N Q Y M A E I R D K D Y Q T N R L L F R N N V M R I G E F E A F E I S K T L ................................................................................................................................................................................................................................................................................................................................................... ......... M E V I H L G A E H S L L N R F V M E M R D V T I Q N D R L R F R R N I E R V G E V M A Y E I S K K M ................................................................................................................................................................................................................................................................................................................................................... nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatagtatggttaaattggggtcatagtttttatgcacccaaaattgtggcaaaattaagaaaatagtttattatttgcaacgtctgaatagcaaatatctgccaacaataatattttttatattctttaaccttgcaaatgtcttattgctgcattttttatatctatcattttgcattacatcataaaattattacctttgcggtgttattttaaggtaaagttgttacaagatacggaattaatttcaacatttatataatatttacaaatggcaaaatttgataagagcgtactcgccaattatggcattacaggcgcaaaagaa Predict ORF larger than 30AA ================================================ Protein_Len: 40 Strand: + Start: 30 End: 149 ............................. M L R T L L F A L R C Y G K G D G L S G S P C R G F L P C T G L Q W S S V P R S ................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 56 Strand: + Start: 7 End: 174 ...... M K C F R D F E C F E L S Y S H Y V V T E K E T V C L V V L V A D F C H V L V Y N G V L F R E V N D F H F F F L ....................................................................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: + Start: 95 End: 196 .............................................................................................. M S R I S A M Y W F T M E F C S E K L M I S I F S F Y S M V K L G S ................................................................................................................................................................................................................................................................................................................. Protein_Len: 44 Strand: + Start: 227 End: 358 .................................................................................................................................................................................................................................. M K K I V Y Y L Q R L N S K Y L P T I I F F I F F N L A N V L L L H F L Y L S F C I T S ............................................................................................................................................... Protein_Len: 38 Strand: + Start: 319 End: 432 .............................................................................................................................................................................................................................................................................................................................. M A A F F I S I I L H Y I I K L L P L R C Y F K V K L L Q D T E L I S T F I ..................................................................... Protein_Len: 31 Strand: - Start: 384 End: 476 ............................................................................................................................................................................................................................................................................................................................................................................................... K L T F N N C S V S N I E V N I Y Y K C I A F N S L L T S A M ......................... Protein_Len: 35 Strand: - Start: 247 End: 351 ...................................................................................................................................................................................................................................................... K C R R F L L Y R G V I I N K I N K L R A F T K N S C K K Y R D N Q M ...................................................................................................................................................... Protein_Len: 36 Strand: - Start: 206 End: 313 ............................................................................................................................................................................................................. A G L I T A F N L F Y N I I Q L T Q I A F I Q W C Y Y K K Y E K V K C M ............................................................................................................................................................................................ Protein_Len: 54 Strand: - Start: 1 End: 162 E Y Q L T K S I E F A E F E G I R M V N N R F L L R N T Q Y D K D R I E A M Y Q N V I S N Q E S F N I I E M ................................................................................................................................................................................................................................................................................................................................................... nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatagtatggttaaattggggtcatagtttttatgcacccaaaattgtggcaaaattaagaaaatagtttattatttgcaacgtctgaatagcaaatatctgccaacaataatattttttatattctttaaccttgcaaatgtcttattgctgcattttttatatctatcattttgcattacatcataaaattattacctttgcggtgttattttaaggtaaagttgttacaagatacggaattaatttcaacatttatataatatttacaaatggcaaaatttgataagagcgtactcgccaattatggcattacaggcgcaaaagaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatagtatggttaaattggggtcatagtttttatgcacccaaaattgtggcaaaattaagaaaatagtttattatttgcaacgtctgaatagcaaatatctgccaacaataatattttttatattctttaaccttgcaaatgtcttattgctgcattttttatatctatcattttgcattacatcataaaattattacctttgcggtgttattttaaggtaaagttgttacaagatacggaattaatttcaacatttatataatatttacaaatggcaaaatttgataagagcgtactcgccaattatggcattacaggcgcaaaagaa Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 52 HP_score: -3.7 Tail_Score: -3.5882 Start: 188 End: 214 Full_Region: aattttgccacaatt ttgggtgcata aaaac tatgaccccaa tttaaccatactata ...........................................................................................................................................................................................ttgggtgcataaaaactatgaccccaa............................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PI1879:PI1880|PI1879:PI1880:uracil phosphoribosyltransferase:phosphoenolpyruvate carboxykinase (ATP):->->:1821306..1821806 501 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatagtatggttaaattggggtcatagtttttatgcacccaaaattgtggcaaaattaagaaaatagtttattatttgcaacgtctgaatagcaaatatctgccaacaataatattttttatattctttaaccttgcaaatgtcttattgctgcattttttatatctatcattttgcattacatcataaaattattacctttgcggtgttattttaaggtaaagttgttacaagatacggaattaatttcaacatttatataatatttacaaatggcaaaatttgataagagcgtactcgccaattatggcattacaggcgcaaaagaa Intra-Species Hit: Count: 1 Min: 172 Max: 501 Len: 330 Subject: pint_PI1879_PI1880|uracil phosphoribosyltransferase:phosphoenolpyruvate carboxykinase (ATP)|POSITIVE:POSITIVE|[1821306,1821806]|501 HSP 1 e-value: 0.0 bit: 654.0 Len: 330 Query Start:172 Query End:501 Subject Strand: POSITIVE Subject Start: 172 Subject End: 501 ...........................................................................................................................................................................ttatagtatggttaaattggggtcatagtttttatgcacccaaaattgtggcaaaattaagaaaatagtttattatttgcaacgtctgaatagcaaatatctgccaacaataatattttttatattctttaaccttgcaaatgtcttattgctgcattttttatatctatcattttgcattacatcataaaattattacctttgcggtgttattttaaggtaaagttgttacaagatacggaattaatttcaacatttatataatatttacaaatggcaaaatttgataagagcgtactcgccaattatggcattacaggcgcaaaagaa ...........................................................................................................................................................................ttatagtatggttaaattggggtcatagtttttatgcacccaaaattgtggcaaaattaagaaaatagtttattatttgcaacgtctgaatagcaaatatctgccaacaataatattttttatattctttaaccttgcaaatgtcttattgctgcattttttatatctatcattttgcattacatcataaaattattacctttgcggtgttattttaaggtaaagttgttacaagatacggaattaatttcaacatttatataatatttacaaatggcaaaatttgataagagcgtactcgccaattatggcattacaggcgcaaaagaa Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUAUAGUAUGGUUAAAUUGGGGUCAUAGUUUUUAUGCACCCAAAAUUGUGGCAAAAUUAAGAAAAUAGUUUAUUAUUUGCAACGUCUGAAUAGCAAAUAUCUGCCAACAAUAAUAUUUUUUAUAUUCUUUAACCUUGCAAAUGUCUUAUUGCUGCAUUUUUUAUAUCUAUCAUUUUGCAUUACAUCAUAAAAUUAUUACCUUUGCGGUGUUAUUUUAAGGUAAAGUUGUUACAAGAUACGGAAUUAAUUUCAACAUUUAUAUAAUAUUUACAAAUGGCAAAAUUUGAUAAGAGCGUACUCGCCAAUUAUGGCAUUACAGGCGCAAAAGAA .....(((.(((((((...(((((((((...))))).))))...(((((((((((((((......))))))..(((((((............)))))))..)))).)))))................))))))).))).....((((.((((.((..........(((((((((((((.........((((((...((((.....))))..))))))..((((((((((....((((...(((.....)))...))))..))))).))))).....))))))..)))).)))..(((...((((....))))..)))..)))))))))). (-66.20) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUCUUUUGCGCCUGUAAUGCCAUAAUUGGCGAGUACGCUCUUAUCAAAUUUUGCCAUUUGUAAAUAUUAUAUAAAUGUUGAAAUUAAUUCCGUAUCUUGUAACAACUUUACCUUAAAAUAACACCGCAAAGGUAAUAAUUUUAUGAUGUAAUGCAAAAUGAUAGAUAUAAAAAAUGCAGCAAUAAGACAUUUGCAAGGUUAAAGAAUAUAAAAAAUAUUAUUGUUGGCAGAUAUUUGCUAUUCAGACGUUGCAAAUAAUAAACUAUUUUCUUAAUUUUGCCACAAUUUUGGGUGCAUAAAAACUAUGACCCCAAUUUAACCAUACUAUAA ...((((((....(((.(((((....)))))..)))..........((((((..((((((((.......))))))))..)))))).......(((.(..(((.....(((((((..............))))))).....)))..).)))..))))))..((((..............((((........))))..(((((((................(((((.(((((((((((((............)))))))..................))))))))))).(((((..((((.....))))..))))))))))))...)))).. (-63.80) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 356 323 289 82 53 pint:PI2029|5end_DNA_topoisomerase_I_1982775..1983005_POSITIVE 304 305 261 187 139 pint:PI0581|5end_conserved_hypothetical_protein_525055..525285_POSITIVE 292 329 282 170 117 pint:PI0008|5end_exoribonuclease_II_(ribonuclease_II)_7238..7468_POSITIVE 292 329 282 131 78 pint:PI0006|5end_hypothetical_protein_7199..7429_POSITIVE 289 325 285 173 128 pint:PI0736|5end_transcriptional_regulator,_TetR_family_670580..670810_POSITIVE 285 326 294 38 10 pint:PI1025|5end_tRNA_modification_GTPase_940752..940982_POSITIVE 283 323 284 44 1 pint:PI1781|5end_membrane-associated_zinc_metalloprotease_1713074..1713304_POSITIVE 283 325 291 66 32 pint:PI0365|5end_hypothetical_protein_335721..335951_POSITIVE 271 178 132 118 75 pint:PI0839|5end_conserved_hypothetical_protein_773843..774073_POSITIVE 266 328 284 111 66 pint:PI1884|5end_conserved_hypothetical_protein_1826883..1827113_POSITIVE 262 322 284 70 36 pint:PI0789|5end_NAD-utilizing_dehydrogenase_726728..726958_POSITIVE 261 330 293 75 38 pint:PI1052|5end_fructose-1,6-bisphosphatase_970492..970722_POSITIVE 258 329 294 79 46 pint:PI0492|5end_hypothetical_protein_451701..451931_POSITIVE 256 328 291 176 142 pint:PI2028|5end_shikimate_kinase_1982162..1982392_POSITIVE 254 316 275 185 140 pint:PI0185|5end_conserved_hypothetical_protein_176992..177222_POSITIVE 253 325 286 151 112 pint:PI1755|5end_RNA_polymerase_sigma-70_factor,_ECF_subfamily_1681930..1682160_POSITIVE 252 226 184 222 179 pint:PI1209|5end_phosphate_starvation-inducible_protein,_phoH_family_1127959..1128189_POSITIVE 251 116 76 48 2 pint:PI0121|5end_outer_membrane_protein,_ompH_family_112625..112855_POSITIVE 250 320 271 80 21 pint:PI1372|5end_thiamine_monophosphate_kinase_1292899..1293129_POSITIVE 250 326 291 73 35 pint:PI0992|5end_RNA_polymerase_sigma-70_factor_916456..916686_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 347 323 290 29 1 pint:PI2028|3end_shikimate_kinase_1982802..1982952_POSITIVE 290 325 282 150 99 pint:PI0007|3end_hypothetical_protein_7300..7450_POSITIVE 289 325 285 104 59 pint:PI0735|3end_ABC_transporter,_ATP-binding_/_permease_670591..670741_POSITIVE 271 178 132 122 79 pint:PI0838|3end_DNA_replication_and_repair_protein_773927..774077_POSITIVE 262 322 284 51 17 pint:PI0788|3end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726789..726939_POSITIVE 261 230 184 75 19 pint:PI1208|3end_monofunctional_biosynthetic_peptidoglycan_transglycosylase_1127879..1128029_POSITIVE 260 330 281 71 27 pint:PI1909|3end_DNA_gyrase,_B_subunit_1855270..1855420_POSITIVE 256 328 291 64 30 pint:PI2027|3end_arginine_decarboxylase_1982130..1982280_POSITIVE 253 325 286 151 112 pint:PI1754|3end_conserved_hypothetical_protein_1682010..1682160_POSITIVE 247 90 47 74 29 pint:PI1429|3end_L-aspartate_oxidase_1349325..1349475_POSITIVE 246 321 291 52 25 pint:PI0957|3end_conserved_hypothetical_protein_889987..890137_POSITIVE 245 233 199 39 9 pint:PI1009|3end_cytochrome_c_nitrite_reductase,_large_subunit_930840..930990_POSITIVE 244 323 289 76 36 pint:PI1082|3end_polypeptide_deformylase_1001922..1002072_POSITIVE 244 320 275 95 50 pint:PI0778|3end_hypothetical_protein_714885..715035_POSITIVE 244 116 80 40 2 pint:PI0120|3end_glutamate_racemase_112697..112847_POSITIVE 243 153 115 134 100 pint:PI0121|3end_outer_membrane_protein,_ompH_family_113208..113358_POSITIVE 240 312 275 109 68 pint:PI1547|3end_hypothetical_protein_1466226..1466376_POSITIVE 238 325 293 147 120 pint:PI1830|3end_conserved_hypothetical_protein_1770361..1770511_POSITIVE 238 243 202 123 86 pint:PI1289|3end_ATP_synthase,_delta/epsilon_subunit_1203108..1203258_POSITIVE 237 323 296 50 25 pint:PI0766|3end_conserved_hypothetical_protein_701976..702126_POSITIVE