Origin IGS: taaaaagtcttcaaatgcagttcattgtgcatttgaagactttttttattgtcattcctacattaccgatacatctgcaaaaggcaacaaatctgtaaatatttttcacaagtaattctattgcgcaactctttgtttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaaacagaactatttttcagcaactgttataggcaagaaaaggacagtagtttccctccaaaaacattgtctgcccctgtatttcagagaacgaaagcactgcgccgatttttaaacgaaacattataaacgctgtctatgcgtttataggaagtgccgagaataatacgaattgggggtaaaaaagaaaaaataaagcggaaaggaatggttccttacgtcgccactccgctttattttatagaaaaaaaactgctttgcaatggctaatatcagccattgctgctgcgtggtttgtaaattgtactta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taagtacaatttacaaaccacgcagcagcaatggctgatattagccattgcaaagcagttttttttctataaaataaagcggagtggcgacgtaaggaaccattcctttccgctttattttttcttttttacccccaattcgtattattctcggcacttcctataaacgcatagacagcgtttataatgtttcgtttaaaaatcggcgcagtgctttcgttctctgaaatacaggggcagacaatgtttttggagggaaactactgtccttttcttgcctataacagttgctgaaaaatagttctgtttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgtaaaacaataggttttgtaaggcgttgataaacaaagagttgcgcaatagaattacttgtgaaaaatatttacagatttgttgccttttgcagatgtatcggtaatgtaggaatgacaataaaaaaagtcttcaaatgcacaatgaactgcatttgaagacttttta Mask Tandem Repeat Region ================================================ taaaaagtcttcaaatgcagttcattgtgcatttgaagactttttttattgtcattcctacattaccgatacatctgcaaaaggcaacaaatctgtaaatatttttcacaagtaattctattgcgcaactctttgtttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaaacagaactatttttcagcaactgttataggcaagaaaaggacagtagtttccctccaaaaacattgtctgcccctgtatttcagagaacgaaagcactgcgccgatttttaaacgaaacattataaacgctgtctatgcgtttataggaagtgccgagaataatacgaattgggggtaaaaaagaaaaaataaagcggaaaggaatggttccttacgtcgccactccgctttattttatagaaaaaaaactgctttgcaatggctaatatcagccattgctgctgcgtggtttgtaaattgtactta Find is-nt database================================================ Query_seq: PI1878:PI1879|PI1878:PI1879:hypothetical protein:uracil phosphoribosyltransferase:->->:1820222..1820810 589 taaaaagtcttcaaatgcagttcattgtgcatttgaagactttttttattgtcattcctacattaccgatacatctgcaaaaggcaacaaatctgtaaatatttttcacaagtaattctattgcgcaactctttgtttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaaacagaactatttttcagcaactgttataggcaagaaaaggacagtagtttccctccaaaaacattgtctgcccctgtatttcagagaacgaaagcactgcgccgatttttaaacgaaacattataaacgctgtctatgcgtttataggaagtgccgagaataatacgaattgggggtaaaaaagaaaaaataaagcggaaaggaatggttccttacgtcgccactccgctttattttatagaaaaaaaactgctttgcaatggctaatatcagccattgctgctgcgtggtttgtaaattgtactta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1878:PI1879|PI1878:PI1879:hypothetical protein:uracil phosphoribosyltransferase:->->:1820222..1820810 589 taaaaagtcttcaaatgcagttcattgtgcatttgaagactttttttattgtcattcctacattaccgatacatctgcaaaaggcaacaaatctgtaaatatttttcacaagtaattctattgcgcaactctttgtttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaaacagaactatttttcagcaactgttataggcaagaaaaggacagtagtttccctccaaaaacattgtctgcccctgtatttcagagaacgaaagcactgcgccgatttttaaacgaaacattataaacgctgtctatgcgtttataggaagtgccgagaataatacgaattgggggtaaaaaagaaaaaataaagcggaaaggaatggttccttacgtcgccactccgctttattttatagaaaaaaaactgctttgcaatggctaatatcagccattgctgctgcgtggtttgtaaattgtactta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1878:PI1879|PI1878:PI1879:hypothetical protein:uracil phosphoribosyltransferase:->->:1820222..1820810 589 taaaaagtcttcaaatgcagttcattgtgcatttgaagactttttttattgtcattcctacattaccgatacatctgcaaaaggcaacaaatctgtaaatatttttcacaagtaattctattgcgcaactctttgtttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaaacagaactatttttcagcaactgttataggcaagaaaaggacagtagtttccctccaaaaacattgtctgcccctgtatttcagagaacgaaagcactgcgccgatttttaaacgaaacattataaacgctgtctatgcgtttataggaagtgccgagaataatacgaattgggggtaaaaaagaaaaaataaagcggaaaggaatggttccttacgtcgccactccgctttattttatagaaaaaaaactgctttgcaatggctaatatcagccattgctgctgcgtggtttgtaaattgtactta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taaaaagtcttcaaatgcagttcattgtgcatttgaagactttttttattgtcattcctacattaccgatacatctgcaaaaggcaacaaatctgtaaatatttttcacaagtaattctattgcgcaactctttgtttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaaacagaactatttttcagcaactgttataggcaagaaaaggacagtagtttccctccaaaaacattgtctgcccctgtatttcagagaacgaaagcactgcgccgatttttaaacgaaacattataaacgctgtctatgcgtttataggaagtgccgagaataatacgaattgggggtaaaaaagaaaaaataaagcggaaaggaatggttccttacgtcgccactccgctttattttatagaaaaaaaactgctttgcaatggctaatatcagccattgctgctgcgtggtttgtaaattgtactta Predict ORF larger than 30AA ================================================ Protein_Len: 32 Strand: + Start: 99 End: 194 .................................................................................................. M F F T S N S I A Q L F V Y Q R L T K P I V L R S K S G C F A R ........................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 209 End: 391 ................................................................................................................................................................................................................ M H R K R A A F A T P K R S Y H F L R E L S L Q K Q N Y F S A T V I G K K R T V V S L Q K H C L P L Y F R E R K H C A D ...................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 49 End: 405 ................................................ M S F L H Y R Y I C K R Q Q I C K Y F S Q V I L L R N S L F I N A L Q N L L F Y V P K A A V L H G K S V G F A S Q K S R ........................................................................................................................................................................................ Protein_Len: 38 Strand: + Start: 345 End: 458 ........................................................................................................................................................................................................................................................................................................................................................ M V C P C I S E N E S T A P I F K R N I I N A V Y A F I G S A E N N T N W G ................................................................................................................................... Protein_Len: 38 Strand: + Start: 433 End: 546 ................................................................................................................................................................................................................................................................................................................................................................................................................................................ M P R I I R I G G K K E K I K R K G M V P Y V A T P L Y F I E K K L L C N G ........................................... Protein_Len: 43 Strand: - Start: 427 End: 555 .......................................................................................................................................................................................................................................................................................................................................................................................................................................... L F H R S Y Y S N P T F F F F Y L P F S H N R V D G S R K I K Y F F F Q K A I A L I M .................................. Protein_Len: 41 Strand: - Start: 366 End: 488 ............................................................................................................................................................................................................................................................................................................................................................................. L V F A S R R N K F S V N Y V S D I R K Y S T G L I I R I P P L F S F I F R F P M ..................................................................................................... Protein_Len: 36 Strand: - Start: 299 End: 406 .......................................................................................................................................................................................................................................................................................................... C S N Y A L F P C Y N G E L F M T Q G Q I E S F S L V A G I K L R F M M ....................................................................................................................................................................................... Protein_Len: 45 Strand: - Start: 168 End: 302 ....................................................................................................................................................................... T G F A A T K C P L L T P K A D C F L R K R L A L A C N D S K L L I I K V F V S S N K L M ............................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: - Start: 160 End: 249 ............................................................................................................................................................... Q K V N W F R S N Q V T F A Y T K C R L L A A K A V G F R M .................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 38 Strand: - Start: 143 End: 256 .............................................................................................................................................. R R V F G I T K R E L L P Q K A R Y F R L N Q M A F S G S E C R W L A T I M ............................................................................................................................................................................................................................................................................................................................................. Protein_Len: 36 Strand: - Start: 14 End: 121 ............. I C N M T C K F V K K I T M G V N G I C R C F A V F R Y I N K V L L E M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... taaaaagtcttcaaatgcagttcattgtgcatttgaagactttttttattgtcattcctacattaccgatacatctgcaaaaggcaacaaatctgtaaatatttttcacaagtaattctattgcgcaactctttgtttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaaacagaactatttttcagcaactgttataggcaagaaaaggacagtagtttccctccaaaaacattgtctgcccctgtatttcagagaacgaaagcactgcgccgatttttaaacgaaacattataaacgctgtctatgcgtttataggaagtgccgagaataatacgaattgggggtaaaaaagaaaaaataaagcggaaaggaatggttccttacgtcgccactccgctttattttatagaaaaaaaactgctttgcaatggctaatatcagccattgctgctgcgtggtttgtaaattgtactta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 84 Start: 115 End: 144 ..................................................................................................................GTTGATAAACAAAGAGTTGCGCAATAGAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taaaaagtcttcaaatgcagttcattgtgcatttgaagactttttttattgtcattcctacattaccgatacatctgcaaaaggcaacaaatctgtaaatatttttcacaagtaattctattgcgcaactctttgtttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaaacagaactatttttcagcaactgttataggcaagaaaaggacagtagtttccctccaaaaacattgtctgcccctgtatttcagagaacgaaagcactgcgccgatttttaaacgaaacattataaacgctgtctatgcgtttataggaagtgccgagaataatacgaattgggggtaaaaaagaaaaaataaagcggaaaggaatggttccttacgtcgccactccgctttattttatagaaaaaaaactgctttgcaatggctaatatcagccattgctgctgcgtggtttgtaaattgtactta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 74 HP_score: -9.0 Tail_Score: -3.53012 Start: 178 End: 228 Full_Region: TTTTACGTTCCAAAA GCGGCTGTTTTGCACGGTAAAAGC GTA GGTTTTGCATCGCAAAAGAGCCGC TTTCGCAACGCCAAA .................................................................................................................................................................................GCGGCTGTTTTGCACGGTAAAAGCGTAGGTTTTGCATCGCAAAAGAGCCGC......................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 79 HP_score: -9.0 Tail_Score: -4.09685 Start: 178 End: 228 Full_Region: tttggcgttgcgaaa gcggctcttttgcgatgcaaaacc tac gcttttaccgtgcaaaacagccgc ttttggaacgtaaaa .................................................................................................................................................................................gcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgc......................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 53 HP_score: -3.8 Tail_Score: -3.62354 Start: 403 End: 429 Full_Region: tattctcggcacttc ctataaacgc atagaca gcgtttataa tgtttcgtttaaaaa ..................................................................................................................................................................................................................................................................................................................................................................................................................ctataaacgcatagacagcgtttataa................................................................................................................................................................ TransTerm Strand: - Conf: 60 HP_score: -7.3 Tail_Score: -2.7693 Start: 404 End: 428 Full_Region: attctcggcacttcc tataaacgc atagaca gcgtttata atgtttcgtttaaaa ...................................................................................................................................................................................................................................................................................................................................................................................................................tataaacgcatagacagcgtttata................................................................................................................................................................. TransTerm Strand: - Conf: 53 HP_score: -5.5 Tail_Score: -2.92386 Start: 406 End: 426 Full_Region: tctcggcacttccta taaacgc atagaca gcgttta taatgtttcgtttaa .....................................................................................................................................................................................................................................................................................................................................................................................................................taaacgcatagacagcgttta................................................................................................................................................................... Find igs database================================================ Query_seq: PI1878:PI1879|PI1878:PI1879:hypothetical protein:uracil phosphoribosyltransferase:->->:1820222..1820810 589 taaaaagtcttcaaatgcagttcattgtgcatttgaagactttttttattgtcattcctacattaccgatacatctgcaaaaggcaacaaatctgtaaatatttttcacaagtaattctattgcgcaactctttgtttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaaacagaactatttttcagcaactgttataggcaagaaaaggacagtagtttccctccaaaaacattgtctgcccctgtatttcagagaacgaaagcactgcgccgatttttaaacgaaacattataaacgctgtctatgcgtttataggaagtgccgagaataatacgaattgggggtaaaaaagaaaaaataaagcggaaaggaatggttccttacgtcgccactccgctttattttatagaaaaaaaactgctttgcaatggctaatatcagccattgctgctgcgtggtttgtaaattgtactta Intra-Species Hit: Count: 54 Min: 1 Max: 589 Len: 589 Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 0.0 bit: 868.0 Len: 459 Query Start:1 Query End:459 Subject Strand: POSITIVE Subject Start: 1 Subject End: 459 taaaaagtcttcaaatgcagttcattgtgcatttgaagacnnnnnnnattgtcattcctacattaccgatacatctgcaaaaggcaacaaatctgtaaatatttttcacaagtaattctattgcgcaactctttgtttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaaacagaactatttttcagcaactgttataggcaagaaaaggacagtagtttccctccaaaaacattgtctgcccctgtatttcagagaacgaaagcactgcgccgatttttaaacgaaacattataaacgctgtctatgcgtttataggaagtgccgagaataatacgaattgggggt.................................................................................................................................. taaaaagtcttcaaatgcagttcattgtgcatttgaagactttttttattgtcattcctacattaccgatacatctgcaaaaggcaacaaatctgtaaatatttttcacaagtaattctattgcgcaactctttgtttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaaacagaactatttttcagcaactgttataggcaagaaaaggacagtagtttccctccaaaaacattgtctgcccctgtatttcagagaacgaaagcactgcgccgatttttaaacgaaacattataaacgctgtctatgcgtttataggaagtgccgagaataatacgaattgggggt.................................................................................................................................. HSP 2 e-value: 2.0E-45 bit: 184.0 Len: 117 Query Start:473 Query End:589 Subject Strand: POSITIVE Subject Start: 473 Subject End: 589 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagcggaaaggaatggttccttacgtcgccactccgctttattttatagnnnnnnnnctgctttgcaatggctaatatcagccattgctgctgcgtggtttgtaaattgtactta ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................taaagcggaaaggaatggttccttacgtcgccactccgctttattttatagaaaaaaaactgctttgcaatggctaatatcagccattgctgctgcgtggtttgtaaattgtactta Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 7.0E-64 bit: 246.0 Len: 144 Query Start:139 Query End:282 Subject Strand: NEGATIVE Subject Start: 111 Subject End: 254 ..........................................................................................................................................atcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................atcaacgcattataaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcagtttttaacagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 5.0E-62 bit: 240.0 Len: 145 Query Start:137 Query End:281 Subject Strand: NEGATIVE Subject Start: 310 Subject End: 454 ........................................................................................................................................ttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaa.................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................ttatcaacgcattacaagacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaaagaaattatctttacaaa.................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 2.0E-61 bit: 238.0 Len: 144 Query Start:138 Query End:281 Subject Strand: NEGATIVE Subject Start: 480 Subject End: 623 .........................................................................................................................................tatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaa.................................................................................................................................................................................................................................................................................................................... .........................................................................................................................................tatcaacgcattacaaaacctattgttttgcattccaaaagcggctgttttgcatggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacagaattatctttacaaa.................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 7.0E-61 bit: 236.0 Len: 147 Query Start:139 Query End:285 Subject Strand: NEGATIVE Subject Start: 182 Subject End: 328 ..........................................................................................................................................atcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaaaca................................................................................................................................................................................................................................................................................................................ ..........................................................................................................................................atcaacgccttacaaaacctattgtttcgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcacaaaagagccgctttcgcaacgccaaagcgcagttatcaatttttaagagaattatctttacaaaaaca................................................................................................................................................................................................................................................................................................................ Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 7.0E-61 bit: 236.0 Len: 135 Query Start:148 Query End:282 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 184 ...................................................................................................................................................ttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaacggaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 7.0E-58 bit: 226.0 Len: 146 Query Start:137 Query End:282 Subject Strand: POSITIVE Subject Start: 82 Subject End: 227 ........................................................................................................................................ttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................ttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 3.0E-57 bit: 224.0 Len: 145 Query Start:139 Query End:283 Subject Strand: POSITIVE Subject Start: 82 Subject End: 226 ..........................................................................................................................................atcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaaa.................................................................................................................................................................................................................................................................................................................. ..........................................................................................................................................atcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaaa.................................................................................................................................................................................................................................................................................................................. Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 1.0E-56 bit: 222.0 Len: 188 Query Start:94 Query End:281 Subject Strand: NEGATIVE Subject Start: 60 Subject End: 247 .............................................................................................tgtaaatatttttcacaagtaattctattgcgcaactctttgtttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaa.................................................................................................................................................................................................................................................................................................................... .............................................................................................tgtaaatatttttcataagagtatctattgtttaactctttaattatcaatgtgttacaaaacctattgttttgcattctaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttgtcactttttaacagaattatctttacaaa.................................................................................................................................................................................................................................................................................................................... Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 2.0E-55 bit: 218.0 Len: 134 Query Start:148 Query End:281 Subject Strand: NEGATIVE Subject Start: 215 Subject End: 348 ...................................................................................................................................................ttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaa.................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................ttacaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcatcgtcaaaacgcagttatcactttttaagagaataatctttacaaa.................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 2.0E-55 bit: 218.0 Len: 134 Query Start:148 Query End:281 Subject Strand: NEGATIVE Subject Start: 149 Subject End: 282 ...................................................................................................................................................ttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaa.................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcggttatcactttttaacggaattatctttacaaa.................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 2.0E-55 bit: 218.0 Len: 142 Query Start:139 Query End:280 Subject Strand: NEGATIVE Subject Start: 170 Subject End: 311 ..........................................................................................................................................atcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaa..................................................................................................................................................................................................................................................................................................................... ..........................................................................................................................................atcagcgcattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaatgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacggaattatctttacaa..................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 3.0E-54 bit: 214.0 Len: 132 Query Start:151 Query End:282 Subject Strand: POSITIVE Subject Start: 304 Subject End: 435 ......................................................................................................................................................caaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 1.0E-53 bit: 212.0 Len: 135 Query Start:148 Query End:282 Subject Strand: NEGATIVE Subject Start: 146 Subject End: 280 ...................................................................................................................................................ttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcattttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 1.0E-53 bit: 212.0 Len: 135 Query Start:148 Query End:282 Subject Strand: NEGATIVE Subject Start: 166 Subject End: 300 ...................................................................................................................................................ttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaacagccgctttcgcaatgtcaaaacgcagttatcaatttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 4.0E-53 bit: 210.0 Len: 130 Query Start:152 Query End:281 Subject Strand: NEGATIVE Subject Start: 200 Subject End: 329 .......................................................................................................................................................aaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaa.................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................aaaacctattgttttgcgttccaaaaacggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaacggaattatctttacaaa.................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 4.0E-53 bit: 210.0 Len: 134 Query Start:148 Query End:281 Subject Strand: POSITIVE Subject Start: 251 Subject End: 384 ...................................................................................................................................................ttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaa.................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa.................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 3.0E-51 bit: 204.0 Len: 135 Query Start:148 Query End:282 Subject Strand: POSITIVE Subject Start: 693 Subject End: 827 ...................................................................................................................................................ttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................ttacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaa................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 1.0E-50 bit: 202.0 Len: 142 Query Start:137 Query End:278 Subject Strand: NEGATIVE Subject Start: 105 Subject End: 246 ........................................................................................................................................ttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttac....................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................ttatcaacgcattgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaaggaaaatatctttac....................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 2.0E-49 bit: 198.0 Len: 132 Query Start:151 Query End:282 Subject Strand: NEGATIVE Subject Start: 114 Subject End: 245 ......................................................................................................................................................caaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacgctaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcgctttttaacagaataatctttacaaaa................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 6.0E-49 bit: 196.0 Len: 147 Query Start:136 Query End:282 Subject Strand: NEGATIVE Subject Start: 113 Subject End: 259 .......................................................................................................................................tttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................tttatcaacgcattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaatcgaaattaccatttttcaaagaaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 4.0E-47 bit: 190.0 Len: 144 Query Start:138 Query End:281 Subject Strand: POSITIVE Subject Start: 373 Subject End: 516 .........................................................................................................................................tatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaa.................................................................................................................................................................................................................................................................................................................... .........................................................................................................................................tatcaacgcattacaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaacagccgctttcgcaatgccaaatcgaaattatcatttttcatcagaattatctttacaaa.................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 2.0E-46 bit: 188.0 Len: 131 Query Start:152 Query End:282 Subject Strand: POSITIVE Subject Start: 111 Subject End: 241 .......................................................................................................................................................aaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaa................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 6.0E-46 bit: 186.0 Len: 142 Query Start:141 Query End:282 Subject Strand: NEGATIVE Subject Start: 201 Subject End: 341 ............................................................................................................................................caacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................caacgcattacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgcaaac-agccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 9.0E-45 bit: 182.0 Len: 132 Query Start:151 Query End:282 Subject Strand: POSITIVE Subject Start: 97 Subject End: 228 ......................................................................................................................................................caaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................caaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 4.0E-44 bit: 180.0 Len: 131 Query Start:152 Query End:282 Subject Strand: NEGATIVE Subject Start: 141 Subject End: 271 .......................................................................................................................................................aaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 9.0E-42 bit: 172.0 Len: 119 Query Start:163 Query End:281 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 375 ..................................................................................................................................................................ttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaa.................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................ttttgcgttccaaaagcggctgttttgtacggtaaaagcgtaggttttgcatcgcaaaagaaccgctttcgcaacgttaaagcgcagttatcactttttaacggaattatatttacaaa.................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 3.0E-38 bit: 161.0 Len: 161 Query Start:138 Query End:298 Subject Strand: POSITIVE Subject Start: 397 Subject End: 557 .........................................................................................................................................tatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaaacagaactatttttca................................................................................................................................................................................................................................................................................................... .........................................................................................................................................tatcaacgtgttacaaaacctattgttttgcattccaaaagcggctgttttgcacggcaaaagcgtaggttttacctcgcaaaacagccgctttcgcaacgtcaaaacgaaattatcaattttcaatgtaattatctttacaaaaccaagactatttttca................................................................................................................................................................................................................................................................................................... Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 1.0E-37 bit: 159.0 Len: 100 Query Start:137 Query End:236 Subject Strand: POSITIVE Subject Start: 73 Subject End: 172 ........................................................................................................................................ttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaa................................................................................................................................................................................................................................................................................................................................................................. ........................................................................................................................................ttatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaa................................................................................................................................................................................................................................................................................................................................................................. Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 8.0E-36 bit: 153.0 Len: 165 Query Start:79 Query End:243 Subject Strand: NEGATIVE Subject Start: 108 Subject End: 272 ..............................................................................aaaaggcaacaaatctgtaaatatttttcacaagtaattctattgcgcaactctttgtttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaa.......................................................................................................................................................................................................................................................................................................................................................... ..............................................................................aaaaggctacaagtctgtaaatatttttcgcaaacatagctattgcgtaactgctttatcatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaacgtcaaa.......................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 8.0E-36 bit: 153.0 Len: 145 Query Start:138 Query End:282 Subject Strand: NEGATIVE Subject Start: 10 Subject End: 154 .........................................................................................................................................tatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... .........................................................................................................................................tatcaacgcattacaaaacctattgttttgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccactttcgcaacgtcaaatcgaaattatcatttttcttcggaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 1.0E-34 bit: 149.0 Len: 147 Query Start:136 Query End:282 Subject Strand: POSITIVE Subject Start: 25 Subject End: 171 .......................................................................................................................................tttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................tttatcaatgctttacaaaacctattgttttgcattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgtaaaagagccgctttcgcaacgtcaaaacgaaattattgtttttcatcagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0191_PI0192|O-methyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[181846,182270]|425 HSP 1 e-value: 2.0E-33 bit: 145.0 Len: 109 Query Start:138 Query End:246 Subject Strand: POSITIVE Subject Start: 168 Subject End: 276 .........................................................................................................................................tatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcg....................................................................................................................................................................................................................................................................................................................................................... .........................................................................................................................................tatcagcgcgttacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaacagccgctattgcaaagcgaaagcg....................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 8.0E-33 bit: 143.0 Len: 188 Query Start:94 Query End:281 Subject Strand: POSITIVE Subject Start: 121 Subject End: 308 .............................................................................................tgtaaatatttttcacaagtaattctattgcgcaactctttgtttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaa.................................................................................................................................................................................................................................................................................................................... .............................................................................................tgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa.................................................................................................................................................................................................................................................................................................................... Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 5.0E-31 bit: 137.0 Len: 189 Query Start:94 Query End:282 Subject Strand: NEGATIVE Subject Start: 155 Subject End: 343 .............................................................................................tgtaaatatttttcacaagtaattctattgcgcaactctttgtttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... .............................................................................................tgtaaatatttttcacaagtgtgtctattgtgtaactatctcatcaccaatgcattataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagcagctttcgcaacgtcaaatcgaaattatcgttttcttaacgaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 5.0E-31 bit: 137.0 Len: 165 Query Start:138 Query End:302 Subject Strand: NEGATIVE Subject Start: 59 Subject End: 223 .........................................................................................................................................tatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaaacagaactatttttcagcaa............................................................................................................................................................................................................................................................................................... .........................................................................................................................................tatcaacacattacaaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcatcgcaaaacagccgctttcgcaatgccaaagcgcaattaccacttttcaacgaaattatctttacaaaagcaaagctatttttcggcaa............................................................................................................................................................................................................................................................................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 2.0E-30 bit: 135.0 Len: 132 Query Start:151 Query End:282 Subject Strand: NEGATIVE Subject Start: 91 Subject End: 222 ......................................................................................................................................................caaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................caaaacctattgttttgcactccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgttttcgcaatgtcaaatcgaaattattactttttaaagaaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 8.0E-30 bit: 133.0 Len: 135 Query Start:148 Query End:282 Subject Strand: NEGATIVE Subject Start: 191 Subject End: 325 ...................................................................................................................................................ttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................ttacaaaatctattgttttgcgtcctaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgtaaaacagccgctttcgcaacgtcaaagtgcagttatcactttttaacgaaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 1.0E-28 bit: 129.0 Len: 149 Query Start:134 Query End:282 Subject Strand: POSITIVE Subject Start: 329 Subject End: 477 .....................................................................................................................................tgtttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................tgtttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaa................................................................................................................................................................................................................................................................................................................... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 2.0E-27 bit: 125.0 Len: 135 Query Start:148 Query End:282 Subject Strand: POSITIVE Subject Start: 328 Subject End: 462 ...................................................................................................................................................ttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................ttacaaaacctattgttttgcatcctaaaagcggctgttttgcacggtaaaagcataggttttgcgttgcaaaagagctgctttcgcaacgtcaaatcgaaattatcgttttcttaacgaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1937_PI1938|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1891147,1891993]|847 HSP 1 e-value: 4.0E-22 bit: 107.0 Len: 130 Query Start:148 Query End:277 Subject Strand: NEGATIVE Subject Start: 507 Subject End: 636 ...................................................................................................................................................ttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatcttta........................................................................................................................................................................................................................................................................................................................ ...................................................................................................................................................ttacaaagcctattgttttacgttctaaaagcgtaggttttgcaaggtaaaagcggctcttttggcgtgcaaaagttacgctttcgcaacgccaaagcgcagttatcgctttttaacagaattatcttta........................................................................................................................................................................................................................................................................................................................ Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 7.0E-21 bit: 103.0 Len: 140 Query Start:160 Query End:299 Subject Strand: NEGATIVE Subject Start: 209 Subject End: 348 ...............................................................................................................................................................ttgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaaacagaactatttttcag.................................................................................................................................................................................................................................................................................................. ...............................................................................................................................................................ttgttttgcgttccaaaagcggctgttttgcaaggtaaaagagccgcttttggcgtgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatttttacaaaagcagaagtgtttttcag.................................................................................................................................................................................................................................................................................................. Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 7.0E-21 bit: 103.0 Len: 104 Query Start:140 Query End:243 Subject Strand: POSITIVE Subject Start: 45 Subject End: 148 ...........................................................................................................................................tcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaa.......................................................................................................................................................................................................................................................................................................................................................... ...........................................................................................................................................tcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaa.......................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 7.0E-21 bit: 103.0 Len: 132 Query Start:148 Query End:279 Subject Strand: NEGATIVE Subject Start: 190 Subject End: 321 ...................................................................................................................................................ttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttaca...................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................ttacaaaacctattgttttgcattccaaaagcgtaggttttacacgataaaagcggctgttttgcgttgcaaaacagccactttcgcaatgtcaaagcgcagttattactttttaacggaattatttttaca...................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 4.0E-19 bit: 97.6 Len: 129 Query Start:152 Query End:280 Subject Strand: NEGATIVE Subject Start: 113 Subject End: 241 .......................................................................................................................................................aaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaa..................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggttgttttgcatcgtaaaacagctgcttttgcaatgtcaaaaggcagttatcactttttaacggaattatttttacaa..................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1324_PI1325|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1243086,1243554]|469 HSP 1 e-value: 2.0E-18 bit: 95.6 Len: 144 Query Start:137 Query End:280 Subject Strand: POSITIVE Subject Start: 247 Subject End: 390 ........................................................................................................................................ttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaa..................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................ttatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa..................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1441_PI1442|hypothetical protein:radical-activating enzyme (pyruvate-formate lyase-activating enzyme)|POSITIVE:POSITIVE|[1363734,1364088]|355 HSP 1 e-value: 7.0E-18 bit: 93.7 Len: 107 Query Start:137 Query End:243 Subject Strand: POSITIVE Subject Start: 71 Subject End: 177 ........................................................................................................................................ttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaa.......................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................ttatcaacgctttacaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgctttcgcaacgtcaaa.......................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-6 bit: 54.0 Len: 35 Query Start:197 Query End:231 Subject Strand: NEGATIVE Subject Start: 131 Subject End: 165 ....................................................................................................................................................................................................aaagcgtaggttttgcatcgcaaaagagccgcttt...................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................aaagcgtaggttttgcaatgcaaaagagccgcttt...................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 7.0E-18 bit: 93.7 Len: 123 Query Start:160 Query End:282 Subject Strand: POSITIVE Subject Start: 199 Subject End: 321 ...............................................................................................................................................................ttgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... ...............................................................................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-6 bit: 54.0 Len: 35 Query Start:197 Query End:231 Subject Strand: NEGATIVE Subject Start: 236 Subject End: 270 ....................................................................................................................................................................................................aaagcgtaggttttgcatcgcaaaagagccgcttt...................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................aaagcgtaggttttgcgttgcaaaagagccgcttt...................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 1.0E-13 bit: 79.8 Len: 124 Query Start:137 Query End:260 Subject Strand: POSITIVE Subject Start: 92 Subject End: 215 ........................................................................................................................................ttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttt......................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................ttatcaacacattgcaaaacctattgttttgcattccaaaagcgtaggttttacacggcaaaagcggctgttttgcgttgcaaaacagccgctttcgcaatgccaaatcgaaattatcattttt......................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 1.0E-13 bit: 79.8 Len: 132 Query Start:151 Query End:282 Subject Strand: NEGATIVE Subject Start: 144 Subject End: 275 ......................................................................................................................................................caaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................caaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgtcaaatcgaaattatcattttttcaacgaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-6 bit: 54.0 Len: 35 Query Start:197 Query End:231 Subject Strand: POSITIVE Subject Start: 195 Subject End: 229 ....................................................................................................................................................................................................aaagcgtaggttttgcatcgcaaaagagccgcttt...................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................aaagcgtaggttttgcgttgcaaaagagccgcttt...................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 4.0E-13 bit: 77.8 Len: 131 Query Start:152 Query End:282 Subject Strand: POSITIVE Subject Start: 179 Subject End: 309 .......................................................................................................................................................aaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................aaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:196 Query End:231 Subject Strand: NEGATIVE Subject Start: 224 Subject End: 259 ...................................................................................................................................................................................................aaaagcgtaggttttgcatcgcaaaagagccgcttt...................................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................aaaagcgtaggttttgcaatgcaaaagagccgcttt...................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0854_PI0855|MiaB-like tRNA modifying enzyme:hypothetical protein|POSITIVE:POSITIVE|[788060,789233]|1174 HSP 1 e-value: 4.0E-13 bit: 77.8 Len: 127 Query Start:134 Query End:260 Subject Strand: NEGATIVE Subject Start: 763 Subject End: 889 .....................................................................................................................................tgtttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttt......................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................tgtttatcaacatattataaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgttgcaaaacctacgctttcgcaacgccaaatcgaaattatcattttt......................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 6.0E-6 bit: 54.0 Len: 35 Query Start:197 Query End:231 Subject Strand: POSITIVE Subject Start: 792 Subject End: 826 ....................................................................................................................................................................................................aaagcgtaggttttgcatcgcaaaagagccgcttt...................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................aaagcgtaggttttgcaacgcaaaacagccgcttt...................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 1.0E-10 bit: 69.9 Len: 131 Query Start:152 Query End:282 Subject Strand: POSITIVE Subject Start: 233 Subject End: 362 .......................................................................................................................................................aaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................aaaacctattgttttgcattccaaaagtgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaatgccaaatcgaaattatc-gtttttcaatgaattatctttacaaaa................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 6.0E-6 bit: 54.0 Len: 107 Query Start:137 Query End:243 Subject Strand: NEGATIVE Subject Start: 180 Subject End: 286 ........................................................................................................................................ttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaa.......................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................ttatcaacgcaatgcaaaacctattgttttgcattgtaaaagcgtaggttttacacggtcaaagcggctgttttgcgatgcaaaacagccgctttcgcaatgccaaa.......................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAAAGUCUUCAAAUGCAGUUCAUUGUGCAUUUGAAGACUUUUUUUAUUGUCAUUCCUACAUUACCGAUACAUCUGCAAAAGGCAACAAAUCUGUAAAUAUUUUUCACAAGUAAUUCUAUUGCGCAACUCUUUGUUUAUCAACGCCUUACAAAACCUAUUGUUUUACGUUCCAAAAGCGGCUGUUUUGCACGGUAAAAGCGUAGGUUUUGCAUCGCAAAAGAGCCGCUUUCGCAACGCCAAAGCGCAGUUAUCACUUUUUAAGAGAAUUAUCUUUACAAAAACAGAACUAUUUUUCAGCAACUGUUAUAGGCAAGAAAAGGACAGUAGUUUCCCUCCAAAAACAUUGUCUGCCCCUGUAUUUCAGAGAACGAAAGCACUGCGCCGAUUUUUAAACGAAACAUUAUAAACGCUGUCUAUGCGUUUAUAGGAAGUGCCGAGAAUAAUACGAAUUGGGGGUAAAAAAGAAAAAAUAAAGCGGAAAGGAAUGGUUCCUUACGUCGCCACUCCGCUUUAUUUUAUAGAAAAAAAACUGCUUUGCAAUGGCUAAUAUCAGCCAUUGCUGCUGCGUGGUUUGUAAAUUGUACUUA .((((((((((((((((((........)))))))))))))))))).....((((....((((..((((.....((((.....(....).....((((((((.(((((..((((.((...(((((((.....(((((.............))))).............((((.(.(((((((((.((((((...((((((.(...).))))))...)))))).))))))))).).)))).....))))))).)).)))).....))))).)))..)))))....)))).........((((..(((.((((((...(....(((((((.((((........))))))))))).).))))))...)))......((((((...(.((((((((((..((..((.((((((((((.......))))))))))...))..))....)))...))))))).)...........(((((((((((((..((.(((........)))..))..))))))))))))).............))))))(((((((((......))))))))).))))..)))).))))...)).))... (-162.12) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAGUACAAUUUACAAACCACGCAGCAGCAAUGGCUGAUAUUAGCCAUUGCAAAGCAGUUUUUUUUCUAUAAAAUAAAGCGGAGUGGCGACGUAAGGAACCAUUCCUUUCCGCUUUAUUUUUUCUUUUUUACCCCCAAUUCGUAUUAUUCUCGGCACUUCCUAUAAACGCAUAGACAGCGUUUAUAAUGUUUCGUUUAAAAAUCGGCGCAGUGCUUUCGUUCUCUGAAAUACAGGGGCAGACAAUGUUUUUGGAGGGAAACUACUGUCCUUUUCUUGCCUAUAACAGUUGCUGAAAAAUAGUUCUGUUUUUGUAAAGAUAAUUCUCUUAAAAAGUGAUAACUGCGCUUUGGCGUUGCGAAAGCGGCUCUUUUGCGAUGCAAAACCUACGCUUUUACCGUGCAAAACAGCCGCUUUUGGAACGUAAAACAAUAGGUUUUGUAAGGCGUUGAUAAACAAAGAGUUGCGCAAUAGAAUUACUUGUGAAAAAUAUUUACAGAUUUGUUGCCUUUUGCAGAUGUAUCGGUAAUGUAGGAAUGACAAUAAAAAAAGUCUUCAAAUGCACAAUGAACUGCAUUUGAAGACUUUUUA ((((((...(((((((..((.(((((.((((((((((....))))))))))...(((((...........(((((((((((((((((...(....)...)))).....)))))))))))))..........(((((((..(((.........(((((....(((((((((.......)))))))))..((.(((.........))).)).)))))...((((.(((.....))))))).....)))...)))).))).....)))))...................))))))).....((((((((((..(((((........(((((....(((....)))(((((((.(((((.(((((((((((.(((((((....((((.......))))....))))))).))))))))))).)))))...((((......))))))))))).........)))))))))).)))))))))).)))))))...)))))).....(((((.(((.((((.((....)).))))...)))...)))))...((((((((((((((((((........)))))))))))))))))). (-172.30) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 961 230 181 212 163 pint:PI2046|5end_hypothetical_protein_1999030..1999260_POSITIVE 938 220 171 65 16 pint:PI1204|5end_hypothetical_protein_1124430..1124660_POSITIVE 906 230 181 60 11 pint:PI0568|5end_hypothetical_protein_512950..513180_POSITIVE 905 250 201 139 90 pint:PI0867|5end_hypothetical_protein_803859..804089_POSITIVE 905 250 201 56 7 pint:PI0866|5end_hypothetical_protein_803776..804006_POSITIVE 896 260 211 217 169 pint:PI0211|5end_hypothetical_protein_204067..204297_POSITIVE 883 220 171 216 167 pint:PI0887|5end_hypothetical_protein_817536..817766_POSITIVE 883 220 171 50 1 pint:PI0089|5end_hypothetical_protein_88162..88392_POSITIVE 882 260 211 57 8 pint:PI1064|5end_hypothetical_protein_983071..983301_POSITIVE 877 240 191 129 80 pint:PI0119|5end_hypothetical_protein_111506..111736_POSITIVE 867 230 181 206 157 pint:PI0991|5end_conserved_hypothetical_protein_915309..915539_POSITIVE 852 240 191 67 18 pint:PI0638|5end_hypothetical_protein_582218..582448_POSITIVE 848 230 181 79 30 pint:PI2022|5end_hypothetical_protein_1978631..1978861_POSITIVE 848 230 181 171 122 pint:PI1804|5end_hypothetical_protein_1738109..1738339_POSITIVE 848 230 181 58 9 pint:PI1786|5end_hypothetical_protein_1718124..1718354_POSITIVE 845 250 201 53 4 pint:PI2023|5end_hypothetical_protein_1978585..1978815_POSITIVE 837 260 211 51 2 pint:PI1041|5end_hypothetical_protein_960443..960673_POSITIVE 825 220 171 229 180 pint:PI1333|5end_conserved_hypothetical_protein_1250777..1251007_POSITIVE 825 220 171 202 153 pint:PI0024|5end_hypothetical_protein_28378..28608_POSITIVE 822 209 161 231 183 pint:PI2024|5end_hypothetical_protein_1978804..1979034_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 938 220 171 151 102 pint:PI0815|3end_hypothetical_protein_754677..754827_POSITIVE 918 220 171 151 102 pint:PI0081|3end_hypothetical_protein_80700..80850_POSITIVE 906 230 181 112 63 pint:PI0819|3end_hypothetical_protein_759919..760069_POSITIVE 906 230 181 85 36 pint:PI0567|3end_hypothetical_protein_513055..513205_POSITIVE 883 220 171 151 102 pint:PI0568|3end_hypothetical_protein_513131..513281_POSITIVE 862 220 171 151 102 pint:PI0638|3end_hypothetical_protein_582402..582552_POSITIVE 862 220 171 146 97 pint:PI0637|3end_hypothetical_protein_582397..582547_POSITIVE 825 220 171 151 102 pint:PI0095|3end_hypothetical_protein_91850..92000_POSITIVE 809 208 161 151 104 pint:PI1041|3end_hypothetical_protein_960675..960825_POSITIVE 808 220 171 151 102 pint:PI1155|3end_hypothetical_protein_1080352..1080502_POSITIVE 793 208 161 151 104 pint:PI1797|3end_hypothetical_protein_1731559..1731709_POSITIVE 793 208 161 151 104 pint:PI0885|3end_hypothetical_protein_817563..817713_POSITIVE 793 208 161 151 104 pint:PI0866|3end_hypothetical_protein_803993..804143_POSITIVE 793 208 161 151 104 pint:PI0820|3end_hypothetical_protein_759980..760130_POSITIVE 793 208 161 151 104 pint:PI0089|3end_hypothetical_protein_88355..88505_POSITIVE 774 208 161 151 104 pint:PI0118|3end_hypothetical_protein_111640..111790_POSITIVE 767 220 174 151 105 pint:PI1252|3end_hypothetical_protein_1175440..1175590_POSITIVE 717 208 161 151 104 pint:PI1005|3end_hypothetical_protein_926481..926631_POSITIVE 656 220 171 102 53 pint:PI0560|3end_hypothetical_protein_508910..509060_POSITIVE 637 200 151 148 99 pint:PI0659|3end_hypothetical_protein_603396..603546_POSITIVE