Origin IGS:
aatttttaaatgtttaaataatactatattttttatggtttctcactaataataaccttaatttacatacatttgacttgtacaaaatcgttgtagtttccttcagtgcgtgcaaaaataaaaaatgttttataggaatgcaaacttttgcactattatttcaaaatatttaacacatattttattattcattgaaagtcttatcccatactctcctatcattacagaagaaggaacagaagcaccccctgcgtacggaacttcccctatcaaacgtttcatttaagccgttccctaagaatcgaacattagtgtaaattcactacaagacggtcgttctacttgaaataaagccgttgtagtcgcagaaaaacttttgtcggagaatttatttacacgtaaagaaatattttacgtgtatggaaattattacttacgtgtagaaaaatatttatttacacgtaaagaatttatcggacttgcgtttctatcgcaccaaacttctgctgcgctttggttgctttaatttattttcaatattataaggaggaataattcaaaatttagtattatctttgcaag
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
cttgcaaagataatactaaattttgaattattcctccttataatattgaaaataaattaaagcaaccaaagcgcagcagaagtttggtgcgatagaaacgcaagtccgataaattctttacgtgtaaataaatatttttctacacgtaagtaataatttccatacacgtaaaatatttctttacgtgtaaataaattctccgacaaaagtttttctgcgactacaacggctttatttcaagtagaacgaccgtcttgtagtgaatttacactaatgttcgattcttagggaacggcttaaatgaaacgtttgataggggaagttccgtacgcagggggtgcttctgttccttcttctgtaatgataggagagtatgggataagactttcaatgaataataaaatatgtgttaaatattttgaaataatagtgcaaaagtttgcattcctataaaacattttttatttttgcacgcactgaaggaaactacaacgattttgtacaagtcaaatgtatgtaaattaaggttattattagtgagaaaccataaaaaatatagtattatttaaacatttaaaaatt

Mask Tandem Repeat Region ================================================
aatttttaaatgtttaaataatactatattttttatggtttctcactaataataaccttaatttacatacatttgacttgtacaaaatcgttgtagtttccttcagtgcgtgcaaaaataaaaaatgttttataggaatgcaaacttttgcactattatttcaaaatatttaacacatattttattattcattgaaagtcttatcccatactctcctatcattacagaagaaggaacagaagcaccccctgcgtacggaacttcccctatcaaacgtttcatttaagccgttccctaagaatcgaacattagtgtaaattcactacaagacggtcgttctacttgaaataaagccgttgtagtcgcagaaaaacttttgtcggagaatttatttacacgtaaagaaatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacgtaaagaatttatcggacttgcgtttctatcgcaccaaacttctgctgcgctttggttgctttaatttattttcaatattataaggaggaataattcaaaatttagtattatctttgcaag

Find is-nt database================================================
Query_seq: PI1775:PI1776|PI1775:PI1776:hypothetical protein:probable peptidase of the M22 family (inactive? chaperone?)):->->:1708181..1708762 582
aatttttaaatgtttaaataatactatattttttatggtttctcactaataataaccttaatttacatacatttgacttgtacaaaatcgttgtagtttccttcagtgcgtgcaaaaataaaaaatgttttataggaatgcaaacttttgcactattatttcaaaatatttaacacatattttattattcattgaaagtcttatcccatactctcctatcattacagaagaaggaacagaagcaccccctgcgtacggaacttcccctatcaaacgtttcatttaagccgttccctaagaatcgaacattagtgtaaattcactacaagacggtcgttctacttgaaataaagccgttgtagtcgcagaaaaacttttgtcggagaatttatttacacgtaaagaaatattttacgtgtatggaaattattacttacgtgtagaaaaatatttatttacacgtaaagaatttatcggacttgcgtttctatcgcaccaaacttctgctgcgctttggttgctttaatttattttcaatattataaggaggaataattcaaaatttagtattatctttgcaag
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: PI1775:PI1776|PI1775:PI1776:hypothetical protein:probable peptidase of the M22 family (inactive? chaperone?)):->->:1708181..1708762 582
aatttttaaatgtttaaataatactatattttttatggtttctcactaataataaccttaatttacatacatttgacttgtacaaaatcgttgtagtttccttcagtgcgtgcaaaaataaaaaatgttttataggaatgcaaacttttgcactattatttcaaaatatttaacacatattttattattcattgaaagtcttatcccatactctcctatcattacagaagaaggaacagaagcaccccctgcgtacggaacttcccctatcaaacgtttcatttaagccgttccctaagaatcgaacattagtgtaaattcactacaagacggtcgttctacttgaaataaagccgttgtagtcgcagaaaaacttttgtcggagaatttatttacacgtaaagaaatattttacgtgtatggaaattattacttacgtgtagaaaaatatttatttacacgtaaagaatttatcggacttgcgtttctatcgcaccaaacttctgctgcgctttggttgctttaatttattttcaatattataaggaggaataattcaaaatttagtattatctttgcaag
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find nr database================================================
Query_seq: PI1775:PI1776|PI1775:PI1776:hypothetical protein:probable peptidase of the M22 family (inactive? chaperone?)):->->:1708181..1708762 582
aatttttaaatgtttaaataatactatattttttatggtttctcactaataataaccttaatttacatacatttgacttgtacaaaatcgttgtagtttccttcagtgcgtgcaaaaataaaaaatgttttataggaatgcaaacttttgcactattatttcaaaatatttaacacatattttattattcattgaaagtcttatcccatactctcctatcattacagaagaaggaacagaagcaccccctgcgtacggaacttcccctatcaaacgtttcatttaagccgttccctaagaatcgaacattagtgtaaattcactacaagacggtcgttctacttgaaataaagccgttgtagtcgcagaaaaacttttgtcggagaatttatttacacgtaaagaaatattttacgtgtatggaaattattacttacgtgtagaaaaatatttatttacacgtaaagaatttatcggacttgcgtttctatcgcaccaaacttctgctgcgctttggttgctttaatttattttcaatattataaggaggaataattcaaaatttagtattatctttgcaag
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

aatttttaaatgtttaaataatactatattttttatggtttctcactaataataaccttaatttacatacatttgacttgtacaaaatcgttgtagtttccttcagtgcgtgcaaaaataaaaaatgttttataggaatgcaaacttttgcactattatttcaaaatatttaacacatattttattattcattgaaagtcttatcccatactctcctatcattacagaagaaggaacagaagcaccccctgcgtacggaacttcccctatcaaacgtttcatttaagccgttccctaagaatcgaacattagtgtaaattcactacaagacggtcgttctacttgaaataaagccgttgtagtcgcagaaaaacttttgtcggagaatttatttacacgtaaagaaatattttacgtgtatggaaattattacttacgtgtagaaaaatatttatttacacgtaaagaatttatcggacttgcgtttctatcgcaccaaacttctgctgcgctttggttgctttaatttattttcaatattataaggaggaataattcaaaatttagtattatctttgcaag
Predict ORF larger than 30AA ================================================
Protein_Len: 51	Strand: +	Start: 18	End: 170
................. M  I  L  Y  F  L  W  F  L  T  N  N  N  L  N  L  H  T  F  D  L  Y  K  I  V  V  V  S  F  S  A  C  K  N  K  K  C  F  I  G  M  Q  T  F  A  L  L  F  Q  N  I ............................................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 53	Strand: +	Start: 125	End: 283
............................................................................................................................ M  F  Y  R  N  A  N  F  C  T  I  I  S  K  Y  L  T  H  I  L  L  F  I  E  S  L  I  P  Y  S  P  I  I  T  E  E  G  T  E  A  P  P  A  Y  G  T  S  P  I  K  R  F  I ...........................................................................................................................................................................................................................................................................................................
Protein_Len: 34	Strand: +	Start: 208	End: 309
............................................................................................................................................................................................................... M  L  S  Y  H  Y  R  R  R  N  R  S  T  P  C  V  R  N  F  P  Y  Q  T  F  H  L  S  R  S  L  R  I  E  H .................................................................................................................................................................................................................................................................................
Protein_Len: 46	Strand: +	Start: 177	End: 314
................................................................................................................................................................................ M  F  Y  Y  S  L  K  V  L  S  H  T  L  L  S  L  Q  K  K  E  Q  K  H  P  L  R  T  E  L  P  L  S  N  V  S  F  K  P  F  P  K  N  R  T  L  V ............................................................................................................................................................................................................................................................................
Protein_Len: 49	Strand: +	Start: 377	End: 523
........................................................................................................................................................................................................................................................................................................................................................................................ M  S  E  N  L  F  T  R  K  E  I  F  Y  V  Y  G  N  Y  Y  L  R  V  E  K  Y  L  F  T  R  K  E  F  I  G  L  A  F  L  S  H  Q  T  S  A  A  L  W  L  L ...........................................................
Protein_Len: 31	Strand: +	Start: 450	End: 542
................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M  Y  L  H  V  K  N  L  S  D  L  R  F  Y  R  T  K  L  L  L  R  F  G  C  F  N  L  F  S  I  L ........................................
Protein_Len: 37	Strand: -	Start: 298	End: 408
......................................................................................................................................................................................................................................................................................................... S  D  F  M  L  T  F  E  S  C  S  P  R  E  V  Q  F  L  A  T  T  T  A  S  F  S  K  D  S  F  K  N  V  R  L  S  M ..............................................................................................................................................................................
Protein_Len: 44	Strand: -	Start: 188	End: 319
........................................................................................................................................................................................... E  N  F  T  K  D  W  V  R  R  D  N  C  F  F  S  C  F  C  G  R  R  V  S  S  G  R  D  F  T  E  N  L  G  N  G  L  F  R  V  N  T  Y  M .......................................................................................................................................................................................................................................................................
Protein_Len: 50	Strand: -	Start: 133	End: 282
.................................................................................................................................... L  F  A  F  K  Q  V  I  I  E  F  Y  K  V  C  I  K  N  N  M  S  L  R  I  G  Y  E  G  I  M  V  S  S  P  V  S  A  G  G  A  Y  P  V  E  G  I  L  R  K  M ............................................................................................................................................................................................................................................................................................................
Protein_Len: 41	Strand: -	Start: 17	End: 139
................ I  I  S  Y  K  K  H  N  R  V  L  L  L  R  L  K  C  V  N  S  K  Y  L  I  T  T  T  E  K  L  A  H  L  F  L  F  H  K  I  P  M ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................

aatttttaaatgtttaaataatactatattttttatggtttctcactaataataaccttaatttacatacatttgacttgtacaaaatcgttgtagtttccttcagtgcgtgcaaaaataaaaaatgttttataggaatgcaaacttttgcactattatttcaaaatatttaacacatattttattattcattgaaagtcttatcccatactctcctatcattacagaagaaggaacagaagcaccccctgcgtacggaacttcccctatcaaacgtttcatttaagccgttccctaagaatcgaacattagtgtaaattcactacaagacggtcgttctacttgaaataaagccgttgtagtcgcagaaaaacttttgtcggagaatttatttacacgtaaagaaatattttacgtgtatggaaattattacttacgtgtagaaaaatatttatttacacgtaaagaatttatcggacttgcgtttctatcgcaccaaacttctgctgcgctttggttgctttaatttattttcaatattataaggaggaataattcaaaatttagtattatctttgcaag
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================
PromScan Matrix: RpoD-17	Strand: +	Score: 82	Start: 159	End: 188
..............................................................................................................................................................TTTCAAAATATTTAACACATATTTTATTAT..........................................................................................................................................................................................................................................................................................................................................................................................................

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

aatttttaaatgtttaaataatactatattttttatggtttctcactaataataaccttaatttacatacatttgacttgtacaaaatcgttgtagtttccttcagtgcgtgcaaaaataaaaaatgttttataggaatgcaaacttttgcactattatttcaaaatatttaacacatattttattattcattgaaagtcttatcccatactctcctatcattacagaagaaggaacagaagcaccccctgcgtacggaacttcccctatcaaacgtttcatttaagccgttccctaagaatcgaacattagtgtaaattcactacaagacggtcgttctacttgaaataaagccgttgtagtcgcagaaaaacttttgtcggagaatttatttacacgtaaagaaatattttacgtgtatggaaattattacttacgtgtagaaaaatatttatttacacgtaaagaatttatcggacttgcgtttctatcgcaccaaacttctgctgcgctttggttgctttaatttattttcaatattataaggaggaataattcaaaatttagtattatctttgcaag
Predict TransTerm conf > 70================================================
TransTerm Strand: +	Conf: 42	HP_score: -2.9	Tail_Score: -2.95652	Start: 81	End: 95	Full_Region: CATACATTTGACTTG TACAA AATCG TTGTA GTTTCCTTCAGTGCG
................................................................................TACAAAATCGTTGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
TransTerm Strand: +	Conf: 52	HP_score: -3.3	Tail_Score: -3.83006	Start: 388	End: 426	Full_Region: ACTTTTGTCGGAGAA TTTATTTACACGTAAAG AAATA TTTTACGTGTATGGAAA TTATTACTTACGTGT
...................................................................................................................................................................................................................................................................................................................................................................................................TTTATTTACACGTAAAGAAATATTTTACGTGTATGGAAA............................................................................................................................................................
TransTerm Strand: +	Conf: 46	HP_score: -3.9	Tail_Score: -2.90486	Start: 398	End: 416	Full_Region: GAGAATTTATTTACA CGTAAAG AAATA TTTTACG TGTATGGAAATTATT
.............................................................................................................................................................................................................................................................................................................................................................................................................CGTAAAGAAATATTTTACG......................................................................................................................................................................
TransTerm Strand: +	Conf: 46	HP_score: -3.5	Tail_Score: -3.01914	Start: 492	End: 511	Full_Region: GACTTGCGTTTCTAT CGCACCA AACTTC TGCTGCG CTTTGGTTGCTTTAA
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACCAAACTTCTGCTGCG.......................................................................

Find igs database================================================
Query_seq: PI1775:PI1776|PI1775:PI1776:hypothetical protein:probable peptidase of the M22 family (inactive? chaperone?)):->->:1708181..1708762 582
aatttttaaatgtttaaataatactatattttttatggtttctcactaataataaccttaatttacatacatttgacttgtacaaaatcgttgtagtttccttcagtgcgtgcaaaaataaaaaatgttttataggaatgcaaacttttgcactattatttcaaaatatttaacacatattttattattcattgaaagtcttatcccatactctcctatcattacagaagaaggaacagaagcaccccctgcgtacggaacttcccctatcaaacgtttcatttaagccgttccctaagaatcgaacattagtgtaaattcactacaagacggtcgttctacttgaaataaagccgttgtagtcgcagaaaaacttttgtcggagaatttatttacacgtaaagaaatattttacgtgtatggaaattattacttacgtgtagaaaaatatttatttacacgtaaagaatttatcggacttgcgtttctatcgcaccaaacttctgctgcgctttggttgctttaatttattttcaatattataaggaggaataattcaaaatttagtattatctttgcaag
Intra-Species Hit: Count: 1	Min: 1	Max: 582	Len: 582
Subject: pint_PI1775_PI1776|hypothetical protein:probable peptidase of the M22 family (inactive? chaperone?))|POSITIVE:POSITIVE|[1708181,1708762]|582
HSP  1	e-value: 0.0	bit: 1082.0	Len: 582	Query Start:1	Query End:582	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 582
aatttttaaatgtttaaataatactatattttttatggtttctcactaataataaccttaatttacatacatttgacttgtacaaaatcgttgtagtttccttcagtgcgtgcnnnnnnnnnnnntgttttataggaatgcaaacttttgcactattatttcaaaatatttaacacatattttattattcattgaaagtcttatcccatactctcctatcattacagaagaaggaacagaagcaccccctgcgtacggaacttcccctatcaaacgtttcatttaagccgttccctaagaatcgaacattagtgtaaattcactacaagacggtcgttctacttgaaataaagccgttgtagtcgcagaaaaacttttgtcggagaatttatttacacgtaaagaaatattttacgtgtatggaaattattacttacgtgtagaaaaatatttatttacacgtaaagaatttatcggacttgcgtttctatcgcaccaaacttctgctgcgctttggttgctttaatttattttcaatattataaggaggaataattcaaaatttagtattatctttgcaag
aatttttaaatgtttaaataatactatattttttatggtttctcactaataataaccttaatttacatacatttgacttgtacaaaatcgttgtagtttccttcagtgcgtgcaaaaataaaaaatgttttataggaatgcaaacttttgcactattatttcaaaatatttaacacatattttattattcattgaaagtcttatcccatactctcctatcattacagaagaaggaacagaagcaccccctgcgtacggaacttcccctatcaaacgtttcatttaagccgttccctaagaatcgaacattagtgtaaattcactacaagacggtcgttctacttgaaataaagccgttgtagtcgcagaaaaacttttgtcggagaatttatttacacgtaaagaaatattttacgtgtatggaaattattacttacgtgtagaaaaatatttatttacacgtaaagaatttatcggacttgcgtttctatcgcaccaaacttctgctgcgctttggttgctttaatttattttcaatattataaggaggaataattcaaaatttagtattatctttgcaag

Inter-species Hit: Count: 0

Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
AAUUUUUAAAUGUUUAAAUAAUACUAUAUUUUUUAUGGUUUCUCACUAAUAAUAACCUUAAUUUACAUACAUUUGACUUGUACAAAAUCGUUGUAGUUUCCUUCAGUGCGUGCAAAAAUAAAAAAUGUUUUAUAGGAAUGCAAACUUUUGCACUAUUAUUUCAAAAUAUUUAACACAUAUUUUAUUAUUCAUUGAAAGUCUUAUCCCAUACUCUCCUAUCAUUACAGAAGAAGGAACAGAAGCACCCCCUGCGUACGGAACUUCCCCUAUCAAACGUUUCAUUUAAGCCGUUCCCUAAGAAUCGAACAUUAGUGUAAAUUCACUACAAGACGGUCGUUCUACUUGAAAUAAAGCCGUUGUAGUCGCAGAAAAACUUUUGUCGGAGAAUUUAUUUACACGUAAAGAAAUAUUUUACGUGUAUGGAAAUUAUUACUUACGUGUAGAAAAAUAUUUAUUUACACGUAAAGAAUUUAUCGGACUUGCGUUUCUAUCGCACCAAACUUCUGCUGCGCUUUGGUUGCUUUAAUUUAUUUUCAAUAUUAUAAGGAGGAAUAAUUCAAAAUUUAGUAUUAUCUUUGCAAG
..........(((..(.(((((((((.(((((..((.(((((((.((.((((((.............((((.......)))).......((((.(((..((...((((((.(((...........(((...(((((((((((....(((((((((.......(((((((.......)))))))........((((...(((((........(((.((........)).))).(((((....(((.....)))....(((((..............))))).........))))).))))).))))....)))))))))...((((((..(((((..(((.....))).....)))))))))))...............(((.((.(((((...(((((((((((.....)))))))))))...))))).....(((((((((((.((....)).)))))))))))........)).))).))))))))))).))).........)))))))))..))..))).))))..........)))))).))))))))).))..))))).))))))))).)..))).. (-121.89)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
CUUGCAAAGAUAAUACUAAAUUUUGAAUUAUUCCUCCUUAUAAUAUUGAAAAUAAAUUAAAGCAACCAAAGCGCAGCAGAAGUUUGGUGCGAUAGAAACGCAAGUCCGAUAAAUUCUUUACGUGUAAAUAAAUAUUUUUCUACACGUAAGUAAUAAUUUCCAUACACGUAAAAUAUUUCUUUACGUGUAAAUAAAUUCUCCGACAAAAGUUUUUCUGCGACUACAACGGCUUUAUUUCAAGUAGAACGACCGUCUUGUAGUGAAUUUACACUAAUGUUCGAUUCUUAGGGAACGGCUUAAAUGAAACGUUUGAUAGGGGAAGUUCCGUACGCAGGGGGUGCUUCUGUUCCUUCUUCUGUAAUGAUAGGAGAGUAUGGGAUAAGACUUUCAAUGAAUAAUAAAAUAUGUGUUAAAUAUUUUGAAAUAAUAGUGCAAAAGUUUGCAUUCCUAUAAAACAUUUUUUAUUUUUGCACGCACUGAAGGAAACUACAACGAUUUUGUACAAGUCAAAUGUAUGUAAAUUAAGGUUAUUAUUAGUGAGAAACCAUAAAAAAUAUAGUAUUAUUUAAACAUUUAAAAAUU
.......(((((((((((.(((((...(((..((((((((.....((((((......((((((......(((((((.((((.(((..((((.......)))).(((.((...(((.((((((((((..............)))))))))).)))........((((((((((.......)))))))))).........)).))).))).)))).))))).))......))))))))))))..(((((((.(((....(((((......)))))))).))).))))))))))..))..))).....(((((((((...(((((((((((((...(((..(......)..)))((((((((....)))))))))))))).....))))))).........((((((((.......))))))))........((((((((((.((((.....((((((....))))))...)))).))..((.((....)).))....))))))))..)))))))))...........((((.(((....)))..))))....))))).)))))))))))............... (-130.64)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
542	480	431	175	126	pint:PI0648|5end_hypothetical_protein_589448..589678_POSITIVE
516	440	391	113	61	pint:PI1462|5end_hypothetical_protein_1385094..1385324_POSITIVE
457	440	391	226	174	pint:PI0702|5end_conserved_hypothetical_protein;_possible_tetracenomycin_C_synthesis_protein_homolog_638640..638870_POSITIVE
430	459	411	154	106	pint:PI1673|5end_hypothetical_protein_1587718..1587948_POSITIVE
405	440	391	150	98	pint:PI0983|5end_hypothetical_protein_909750..909980_POSITIVE
398	420	375	93	45	pint:PI1450|5end_hypothetical_protein_1372683..1372913_POSITIVE
395	469	429	120	80	pint:PI0579|5end_hypothetical_protein_523419..523649_POSITIVE
385	449	410	227	188	pint:PI0917|5end_phosphoglycolate_phosphatase_846371..846601_POSITIVE
378	474	433	162	118	pint:PI0619|5end_hypothetical_protein_569364..569594_POSITIVE
377	400	352	221	173	pint:PI0592|5end_DNA_mismatch_repair_protein_540795..541025_POSITIVE
337	520	474	84	25	pint:PI1625|5end_conserved_hypothetical_protein;_possible_phage_transposase_1549316..1549546_POSITIVE
337	520	474	84	25	pint:PI0332|5end_conserved_hypothetical_protein_312600..312830_POSITIVE
330	469	423	231	188	pint:PI1674|5end_hypothetical_protein_1587829..1588059_POSITIVE
321	280	234	207	159	pint:PI0197|5end_acetate_kinase_188602..188832_POSITIVE
319	280	233	102	59	pint:PI1550|5end_conserved_hypothetical_protein_1467360..1467590_POSITIVE
319	410	364	102	58	pint:PI0535|5end_hypothetical_protein_489508..489738_POSITIVE
318	470	421	169	119	pint:PI0115|5end_hypothetical_protein_108062..108292_POSITIVE
318	470	421	155	105	pint:PI0111|5end_hypothetical_protein_108048..108278_POSITIVE
318	470	421	120	70	pint:PI0112|5end_hypothetical_protein_108013..108243_POSITIVE
317	520	475	69	18	pint:PI0730|5end_hypothetical_protein_661685..661915_POSITIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
573	460	411	63	14	pint:PI0533|3end_ABC_transporter,_permease_protein_488421..488571_POSITIVE
435	466	422	47	4	pint:PI0797|3end_tRNA_pseudouridine_synthase_A_(pseudouridylate_synthase)_735752..735902_POSITIVE
407	474	434	55	15	pint:PI0701|3end_hypothetical_protein_638537..638687_POSITIVE
403	440	391	65	17	pint:PI1314|3end_hypothetical_protein_1231423..1231573_POSITIVE
372	471	434	111	70	pint:PI0725|3end_hypothetical_protein_658933..659083_POSITIVE
346	479	434	67	22	pint:PI2106|3end_hypothetical_protein_2059498..2059648_POSITIVE
339	519	476	149	108	pint:PI1623|3end_hypothetical_protein_1549261..1549411_POSITIVE
339	465	429	37	1	pint:PI1461|3end_conserved_hypothetical_protein_1385073..1385223_POSITIVE
319	280	233	44	1	pint:PI1549|3end_conserved_hypothetical_protein_1467382..1467532_POSITIVE
317	520	475	69	18	pint:PI0729|3end_integrase_661765..661915_POSITIVE
315	517	474	105	64	pint:PI0225|3end_conserved_hypothetical_protein_222759..222909_POSITIVE
314	469	434	145	110	pint:PI2105|3end_hypothetical_protein_2059586..2059736_POSITIVE
312	270	224	150	104	pint:PI0660|3end_conserved_hypothetical_protein_603997..604147_POSITIVE
310	260	211	56	11	pint:PI0814|3end_conserved_hypothetical_protein_754426..754576_POSITIVE
307	466	430	41	5	pint:PI0808|3end_ISPg3-related_transposase_746457..746607_POSITIVE
300	524	481	125	83	pint:PI0396|3end_possible_tetracycline_resistance_element_mobilization_regulatory_protein,_C-terminal_fragment_362396..362546_POSITIVE
298	518	475	144	107	pint:PI0587|3end_conserved_hypothetical_protein_535347..535497_POSITIVE
295	519	476	149	108	pint:PI0330|3end_hypothetical_protein_312545..312695_POSITIVE
293	288	242	49	2	pint:PI0984|3end_hypothetical_protein_910144..910294_POSITIVE
293	517	475	148	96	pint:PI0750|3end_zinc_protease_680633..680783_POSITIVE