Origin IGS: catttagttctctacggttacagccctgtattcagccttttccgccgacttgctgtgattctttataagtttgtaatttacactcatatattgttctatttaattctttcttgcttccttttctgtttagaatacgtataaaatcatatttagatacctacaaaatcataattatatacgcattccgtttaattatctaagctttgagaaatacttatcaaagcttagataaattattatcacagttctgataaaaacttctcaaagctttgataattctattttctacgtacaaagataatacaatcccctaagaaaaagaagaaaacaagcagggaaaataacatcagctccgtattctttccatttcttgttatatgtttgcatcatactaagcctatgaagcattcagaattatcacatattctatattcaccctgcttctttcttgatgttaggaaggtgataaatcacgcccttacaacaccaatgcaaatacaatacactggccctacgaacaatgcggcaacagcgtaggaaccgatttatcgcattcctaacacacaaaaaaaatca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgattttttttgtgtgttaggaatgcgataaatcggttcctacgctgttgccgcattgttcgtagggccagtgtattgtatttgcattggtgttgtaagggcgtgatttatcaccttcctaacatcaagaaagaagcagggtgaatatagaatatgtgataattctgaatgcttcataggcttagtatgatgcaaacatataacaagaaatggaaagaatacggagctgatgttattttccctgcttgttttcttctttttcttaggggattgtattatctttgtacgtagaaaatagaattatcaaagctttgagaagtttttatcagaactgtgataataatttatctaagctttgataagtatttctcaaagcttagataattaaacggaatgcgtatataattatgattttgtaggtatctaaatatgattttatacgtattctaaacagaaaaggaagcaagaaagaattaaatagaacaatatatgagtgtaaattacaaacttataaagaatcacagcaagtcggcggaaaaggctgaatacagggctgtaaccgtagagaactaaatg Mask Tandem Repeat Region ================================================ catttagttctctacggttacagccctgtattcagccttttccgccgacttgctgtgattctttataagtttgtaatttacactcatatattgttctatttaattctttcttgcttccttttctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcattccgtttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttctattttctacgtacaaagataatacaatcccctaagaaaaagaagaaaacaagcagggaaaataacatcagctccgtattctttccatttcttgttatatgtttgcatcatactaagcctatgaagcattcagaattatcacatattctatattcaccctgcttctttcttgatgttaggaaggtgataaatcacgcccttacaacaccaatgcaaatacaatacactggccctacgaacaatgcggcaacagcgtaggaaccgatttatcgcattcctaacacacaaaaaaaatca Find is-nt database================================================ Query_seq: PI1749:PI1750|PI1749:PI1750:conserved hypothetical protein:sulfate transporter:->->:1671698..1672273 576 catttagttctctacggttacagccctgtattcagccttttccgccgacttgctgtgattctttataagtttgtaatttacactcatatattgttctatttaattctttcttgcttccttttctgtttagaatacgtataaaatcatatttagatacctacaaaatcataattatatacgcattccgtttaattatctaagctttgagaaatacttatcaaagcttagataaattattatcacagttctgataaaaacttctcaaagctttgataattctattttctacgtacaaagataatacaatcccctaagaaaaagaagaaaacaagcagggaaaataacatcagctccgtattctttccatttcttgttatatgtttgcatcatactaagcctatgaagcattcagaattatcacatattctatattcaccctgcttctttcttgatgttaggaaggtgataaatcacgcccttacaacaccaatgcaaatacaatacactggccctacgaacaatgcggcaacagcgtaggaaccgatttatcgcattcctaacacacaaaaaaaatca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1749:PI1750|PI1749:PI1750:conserved hypothetical protein:sulfate transporter:->->:1671698..1672273 576 catttagttctctacggttacagccctgtattcagccttttccgccgacttgctgtgattctttataagtttgtaatttacactcatatattgttctatttaattctttcttgcttccttttctgtttagaatacgtataaaatcatatttagatacctacaaaatcataattatatacgcattccgtttaattatctaagctttgagaaatacttatcaaagcttagataaattattatcacagttctgataaaaacttctcaaagctttgataattctattttctacgtacaaagataatacaatcccctaagaaaaagaagaaaacaagcagggaaaataacatcagctccgtattctttccatttcttgttatatgtttgcatcatactaagcctatgaagcattcagaattatcacatattctatattcaccctgcttctttcttgatgttaggaaggtgataaatcacgcccttacaacaccaatgcaaatacaatacactggccctacgaacaatgcggcaacagcgtaggaaccgatttatcgcattcctaacacacaaaaaaaatca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1749:PI1750|PI1749:PI1750:conserved hypothetical protein:sulfate transporter:->->:1671698..1672273 576 catttagttctctacggttacagccctgtattcagccttttccgccgacttgctgtgattctttataagtttgtaatttacactcatatattgttctatttaattctttcttgcttccttttctgtttagaatacgtataaaatcatatttagatacctacaaaatcataattatatacgcattccgtttaattatctaagctttgagaaatacttatcaaagcttagataaattattatcacagttctgataaaaacttctcaaagctttgataattctattttctacgtacaaagataatacaatcccctaagaaaaagaagaaaacaagcagggaaaataacatcagctccgtattctttccatttcttgttatatgtttgcatcatactaagcctatgaagcattcagaattatcacatattctatattcaccctgcttctttcttgatgttaggaaggtgataaatcacgcccttacaacaccaatgcaaatacaatacactggccctacgaacaatgcggcaacagcgtaggaaccgatttatcgcattcctaacacacaaaaaaaatca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 catttagttctctacggttacagccctgtattcagccttttccgccgacttgctgtgattctttataagtttgtaatttacactcatatattgttctatttaattctttcttgcttccttttctgtttagaatacgtataaaatcatatttagatacctacaaaatcataattatatacgcattccgtttaattatctaagctttgagaaatacttatcaaagcttagataaattattatcacagttctgataaaaacttctcaaagctttgataattctattttctacgtacaaagataatacaatcccctaagaaaaagaagaaaacaagcagggaaaataacatcagctccgtattctttccatttcttgttatatgtttgcatcatactaagcctatgaagcattcagaattatcacatattctatattcaccctgcttctttcttgatgttaggaaggtgataaatcacgcccttacaacaccaatgcaaatacaatacactggccctacgaacaatgcggcaacagcgtaggaaccgatttatcgcattcctaacacacaaaaaaaatca Predict ORF larger than 30AA ================================================ Protein_Len: 36 Strand: + Start: 90 End: 197 ......................................................................................... M V L F N S F L L P F L F R I R I K S Y L D T Y K I I I I Y A F R L I I ........................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 298 End: 534 ......................................................................................................................................................................................................................................................................................................... M I Q S P K K K K K T S R E N N I S S V F F P F L V I C L H H T K P M K H S E L S H I L Y S P C F F L D V R K V I N H A .......................................... Protein_Len: 35 Strand: + Start: 470 End: 574 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M T P L Q H Q C K Y N T L A L R T M R Q Q R R N R F I A F L T H K K N .. Protein_Len: 44 Strand: - Start: 436 End: 567 ................................................................................................................................................................................................................................................................................................................................................................................................................................................... G A E K K I N P L H Y I V G K C C W H L Y L V S A R R V I R C C R L F R N I A N R V C M ......... Protein_Len: 40 Strand: - Start: 289 End: 408 ................................................................................................................................................................................................................................................................................................ T C L Y Y L G R L F L L F C A P F I V D A G Y E K W K K N Y T Q M M S L R H L M ........................................................................................................................................................................ Protein_Len: 32 Strand: - Start: 282 End: 377 ......................................................................................................................................................................................................................................................................................... K R R V F I I C D G L F F F F V L L S F L M L E T N K G N R T M ....................................................................................................................................................................................................... Protein_Len: 35 Strand: - Start: 35 End: 139 .................................. G K G G V Q Q S E K Y T Q L K C E Y I T R N L E K K S G K R N L I R M ..................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 31 Strand: - Start: 7 End: 99 ...... N E V T V A R Y E A K E A S K S H N K I L K Y N V S M Y Q E M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. catttagttctctacggttacagccctgtattcagccttttccgccgacttgctgtgattctttataagtttgtaatttacactcatatattgttctatttaattctttcttgcttccttttctgtttagaatacgtataaaatcatatttagatacctacaaaatcataattatatacgcattccgtttaattatctaagctttgagaaatacttatcaaagcttagataaattattatcacagttctgataaaaacttctcaaagctttgataattctattttctacgtacaaagataatacaatcccctaagaaaaagaagaaaacaagcagggaaaataacatcagctccgtattctttccatttcttgttatatgtttgcatcatactaagcctatgaagcattcagaattatcacatattctatattcaccctgcttctttcttgatgttaggaaggtgataaatcacgcccttacaacaccaatgcaaatacaatacactggccctacgaacaatgcggcaacagcgtaggaaccgatttatcgcattcctaacacacaaaaaaaatca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 83 Start: 171 End: 200 ..........................................................................................................................................................................TTAGATAATTAAACGGAATGCGTATATAAT........................................................................................................................................................................................................................................................................................................................................................................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ catttagttctctacggttacagccctgtattcagccttttccgccgacttgctgtgattctttataagtttgtaatttacactcatatattgttctatttaattctttcttgcttccttttctgtttagaatacgtataaaatcatatttagatacctacaaaatcataattatatacgcattccgtttaattatctaagctttgagaaatacttatcaaagcttagataaattattatcacagttctgataaaaacttctcaaagctttgataattctattttctacgtacaaagataatacaatcccctaagaaaaagaagaaaacaagcagggaaaataacatcagctccgtattctttccatttcttgttatatgtttgcatcatactaagcctatgaagcattcagaattatcacatattctatattcaccctgcttctttcttgatgttaggaaggtgataaatcacgcccttacaacaccaatgcaaatacaatacactggccctacgaacaatgcggcaacagcgtaggaaccgatttatcgcattcctaacacacaaaaaaaatca Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 90 HP_score: -12.1 Tail_Score: -3.34233 Start: 190 End: 236 Full_Region: TATACGCATTCCGTT TAATTATCTAAGCTTTGAGAA ATAC TTATCAAAGCTTAGATAAATTA TTATCACAGTTCTGA .............................................................................................................................................................................................TAATTATCTAAGCTTTGAGAAATACTTATCAAAGCTTAGATAAATTA.................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 91 HP_score: -11.9 Tail_Score: -3.8062 Start: 192 End: 233 Full_Region: TACGCATTCCGTTTA ATTATCTAAGCTTTGAGAA ATAC TTATCAAAGCTTAGATAAA TTATTATCACAGTTC ...............................................................................................................................................................................................ATTATCTAAGCTTTGAGAAATACTTATCAAAGCTTAGATAAA....................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -15.4 Tail_Score: -2.8789 Start: 193 End: 232 Full_Region: ACGCATTCCGTTTAA TTATCTAAGCTTTGAGAA ATAC TTATCAAAGCTTAGATAA ATTATTATCACAGTT ................................................................................................................................................................................................TTATCTAAGCTTTGAGAAATACTTATCAAAGCTTAGATAA........................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 86 HP_score: -12.7 Tail_Score: -2.71144 Start: 196 End: 229 Full_Region: tgtgataataattta tctaagctttgataa gtat ttctcaaagcttaga taattaaacggaatg ...................................................................................................................................................................................................tctaagctttgataagtatttctcaaagcttaga........................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 66 HP_score: -7.9 Tail_Score: -3.0471 Start: 218 End: 273 Full_Region: TTTGAGAAATACTTA TCAAAGCTTAGATAAATTATTATCA CAGTTC TGATAAAAACTTCTCAAAGCTTTGA TAATTCTATTTTCTA .........................................................................................................................................................................................................................TCAAAGCTTAGATAAATTATTATCACAGTTCTGATAAAAACTTCTCAAAGCTTTGA............................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 50 HP_score: -2.0 Tail_Score: -3.88618 Start: 223 End: 268 Full_Region: GAAATACTTATCAAA GCTTAGATAAATTATTATCA CAGTTC TGATAAAAACTTCTCAAAGC TTTGATAATTCTATT ..............................................................................................................................................................................................................................GCTTAGATAAATTATTATCACAGTTCTGATAAAAACTTCTCAAAGC.................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 57 HP_score: -4.2 Tail_Score: -3.80551 Start: 223 End: 268 Full_Region: aatagaattatcaaa gctttgagaagtttttatca gaactg tgataataatttatctaagc tttgataagtatttc ..............................................................................................................................................................................................................................gctttgagaagtttttatcagaactgtgataataatttatctaagc.................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PI1749:PI1750|PI1749:PI1750:conserved hypothetical protein:sulfate transporter:->->:1671698..1672273 576 catttagttctctacggttacagccctgtattcagccttttccgccgacttgctgtgattctttataagtttgtaatttacactcatatattgttctatttaattctttcttgcttccttttctgtttagaatacgtataaaatcatatttagatacctacaaaatcataattatatacgcattccgtttaattatctaagctttgagaaatacttatcaaagcttagataaattattatcacagttctgataaaaacttctcaaagctttgataattctattttctacgtacaaagataatacaatcccctaagaaaaagaagaaaacaagcagggaaaataacatcagctccgtattctttccatttcttgttatatgtttgcatcatactaagcctatgaagcattcagaattatcacatattctatattcaccctgcttctttcttgatgttaggaaggtgataaatcacgcccttacaacaccaatgcaaatacaatacactggccctacgaacaatgcggcaacagcgtaggaaccgatttatcgcattcctaacacacaaaaaaaatca Intra-Species Hit: Count: 2 Min: 1 Max: 565 Len: 565 Subject: pint_PI1749_PI1750|conserved hypothetical protein:sulfate transporter|POSITIVE:POSITIVE|[1671698,1672273]|576 HSP 1 e-value: 0.0 bit: 1120.0 Len: 565 Query Start:1 Query End:565 Subject Strand: POSITIVE Subject Start: 1 Subject End: 565 catttagttctctacggttacagccctgtattcagccttttccgccgacttgctgtgattctttataagtttgtaatttacactcatatattgttctatttaattctttcttgcttccttttctgtttagaatacgtataaaatcatatttagatacctacaaaatcataattatatacgcattccgtttaattatctaagctttgagaaatacttatcaaagcttagataaattattatcacagttctgataaaaacttctcaaagctttgataattctattttctacgtacaaagataatacaatcccctaagaaaaagaagaaaacaagcagggaaaataacatcagctccgtattctttccatttcttgttatatgtttgcatcatactaagcctatgaagcattcagaattatcacatattctatattcaccctgcttctttcttgatgttaggaaggtgataaatcacgcccttacaacaccaatgcaaatacaatacactggccctacgaacaatgcggcaacagcgtaggaaccgatttatcgcattcctaacacac........... catttagttctctacggttacagccctgtattcagccttttccgccgacttgctgtgattctttataagtttgtaatttacactcatatattgttctatttaattctttcttgcttccttttctgtttagaatacgtataaaatcatatttagatacctacaaaatcataattatatacgcattccgtttaattatctaagctttgagaaatacttatcaaagcttagataaattattatcacagttctgataaaaacttctcaaagctttgataattctattttctacgtacaaagataatacaatcccctaagaaaaagaagaaaacaagcagggaaaataacatcagctccgtattctttccatttcttgttatatgtttgcatcatactaagcctatgaagcattcagaattatcacatattctatattcaccctgcttctttcttgatgttaggaaggtgataaatcacgcccttacaacaccaatgcaaatacaatacactggccctacgaacaatgcggcaacagcgtaggaaccgatttatcgcattcctaacacac........... Subject: pint_PI1736_PI1737|topoisomerase IV, subunit A:glycyl-tRNA synthetase|POSITIVE:POSITIVE|[1657151,1657905]|755 HSP 1 e-value: 2.0E-89 bit: 331.0 Len: 251 Query Start:106 Query End:356 Subject Strand: NEGATIVE Subject Start: 202 Subject End: 451 .........................................................................................................ctttcttgcttccttttctgtttagaatacgtataaaatcatatttagatacctacaaaatcataattatatacgcattccgtttaattatctaagctttgagaaatacttatcaaagcttagataaattattatcacagttctgataaaaacttctcaaagctttgataattctattttctacgtacaaagataatacaatcccctaagaaaaagaagaaaacaagcagggaaaataacatcagctccgt............................................................................................................................................................................................................................ .........................................................................................................ctttcttgattccttttctgtttaga-tacgtataaaatcatatttagatgcctacaaaatcataattctatacgtattctgtagaattatctaagctttgataatgatttatcaaagcttagataaattattatcaaagttctgataaatttttctcaaagcttaaataattctattttctacgtacaaagataatacaatcccctaagaaaaagaagaaaacaagcaggggaaataacatcaactccgt............................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 40 Query Start:193 Query End:232 Subject Strand: POSITIVE Subject Start: 326 Subject End: 365 ................................................................................................................................................................................................ttatctaagctttgagaaatacttatcaaagcttagataa........................................................................................................................................................................................................................................................................................................................................................ ................................................................................................................................................................................................ttatctaagctttgataaatcattatcaaagcttagataa........................................................................................................................................................................................................................................................................................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CAUUUAGUUCUCUACGGUUACAGCCCUGUAUUCAGCCUUUUCCGCCGACUUGCUGUGAUUCUUUAUAAGUUUGUAAUUUACACUCAUAUAUUGUUCUAUUUAAUUCUUUCUUGCUUCCUUUUCUGUUUAGAAUACGUAUAAAAUCAUAUUUAGAUACCUACAAAAUCAUAAUUAUAUACGCAUUCCGUUUAAUUAUCUAAGCUUUGAGAAAUACUUAUCAAAGCUUAGAUAAAUUAUUAUCACAGUUCUGAUAAAAACUUCUCAAAGCUUUGAUAAUUCUAUUUUCUACGUACAAAGAUAAUACAAUCCCCUAAGAAAAAGAAGAAAACAAGCAGGGAAAAUAACAUCAGCUCCGUAUUCUUUCCAUUUCUUGUUAUAUGUUUGCAUCAUACUAAGCCUAUGAAGCAUUCAGAAUUAUCACAUAUUCUAUAUUCACCCUGCUUCUUUCUUGAUGUUAGGAAGGUGAUAAAUCACGCCCUUACAACACCAAUGCAAAUACAAUACACUGGCCCUACGAACAAUGCGGCAACAGCGUAGGAACCGAUUUAUCGCAUUCCUAACACAC ....(((..(.....(((((((((...((.....((.......))..))..)))))))))...((((.(..((((...))))..).))))..)..)))...............((((.((((((.....((((.((((((.(((.((((((((....)))...))).)).))).)))))).)))).....(((((((.((((((((((((....((((((.((((..(((((....)))))..)))).))))))....)))))))))))).))))))).((((.(((........))).))))..........)))))).)))).....((((((((...((((((.........................)))))).((..(((.(((((.......))))).)))..))........................))))))))......((.(((((((((.((((((((((..............(((.((...........)).))).((((((.....((......)).))))))....)))))))))).))))))))))). (-119.21) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GUGUGUUAGGAAUGCGAUAAAUCGGUUCCUACGCUGUUGCCGCAUUGUUCGUAGGGCCAGUGUAUUGUAUUUGCAUUGGUGUUGUAAGGGCGUGAUUUAUCACCUUCCUAACAUCAAGAAAGAAGCAGGGUGAAUAUAGAAUAUGUGAUAAUUCUGAAUGCUUCAUAGGCUUAGUAUGAUGCAAACAUAUAACAAGAAAUGGAAAGAAUACGGAGCUGAUGUUAUUUUCCCUGCUUGUUUUCUUCUUUUUCUUAGGGGAUUGUAUUAUCUUUGUACGUAGAAAAUAGAAUUAUCAAAGCUUUGAGAAGUUUUUAUCAGAACUGUGAUAAUAAUUUAUCUAAGCUUUGAUAAGUAUUUCUCAAAGCUUAGAUAAUUAAACGGAAUGCGUAUAUAAUUAUGAUUUUGUAGGUAUCUAAAUAUGAUUUUAUACGUAUUCUAAACAGAAAAGGAAGCAAGAAAGAAUUAAAUAGAACAAUAUAUGAGUGUAAAUUACAAACUUAUAAAGAAUCACAGCAAGUCGGCGGAAAAGGCUGAAUACAGGGCUGUAACCGUAGAGAACUAAAUG ..((((((((((.(.((((((((.......(((((.((((.((............(((((((((.......))))))))))).)))).))))))))))))).).))))))))))...((((.((((((((.(((((((((((........)))))).......(((.(((((.((((..(.....(((..........)))...)..)))).))))).))).))))).)))))))).))))(((((((((((..((((((......))))))...............(((((((.((((((((((((((.(((((((((.((..(((((....)))))..)).))))))))).)))))))))))))).)))))))....((((((((((((.(((((((......(((....)))..))))))).))))))))))))....)))))))))))...............(((.......(((((((...........))))))).......(((((...(((((.......))))).......)))))............))).... (-160.41) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 997 60 11 64 15 pint:PI1715|5end_conserved_hypothetical_protein;_possible_DNA-binding_protein,_histone-like_family_1631639..1631869_POSITIVE 744 230 181 183 134 pint:PI1716|5end_hypothetical_protein_1631588..1631818_POSITIVE 507 480 432 167 119 pint:PI0902|5end_hypothetical_protein_832291..832521_POSITIVE 417 457 412 231 187 pint:PI1714|5end_ISPg3-related_transposase_1630376..1630606_POSITIVE 413 480 438 179 138 pint:PI0866|5end_hypothetical_protein_803776..804006_POSITIVE 396 480 431 122 71 pint:PI0118|5end_hypothetical_protein_111321..111551_POSITIVE 387 539 492 199 144 pint:PI1038|5end_hypothetical_protein_958685..958915_POSITIVE 363 483 453 190 160 pint:PI1041|5end_hypothetical_protein_960443..960673_POSITIVE 344 543 501 182 138 pint:PI0667|5end_hypothetical_protein_610113..610343_POSITIVE 337 59 15 118 77 pint:PI1825|5end_2-C-methyl-D-erythritol_4-phosphate_cytidylyltransferase_1764996..1765226_POSITIVE 337 548 507 174 130 pint:PI0520|5end_hypothetical_protein_478755..478985_POSITIVE 334 558 514 59 1 pint:PI0238|5end_two-component_system_response_regulator_237054..237284_POSITIVE 333 478 445 137 103 pint:PI0069|5end_hypothetical_protein_67072..67302_POSITIVE 328 542 507 212 176 pint:PI1950|5end_iron-regulated_membrane_permease_1904468..1904698_POSITIVE 326 56 16 118 79 pint:PI1485|5end_hypothetical_protein_1405170..1405400_POSITIVE 323 518 473 193 142 pint:PI0817|5end_glycosyl_transferase,_group_1_family_protein_756861..757091_POSITIVE 319 57 12 148 105 pint:PI0528|5end_hypothetical_protein_482791..483021_POSITIVE 307 59 13 60 20 pint:PI0364|5end_hypothetical_protein_334002..334232_POSITIVE 305 57 12 169 123 pint:PI1980|5end_conserved_hypothetical_protein_1937470..1937700_POSITIVE 305 57 23 59 19 pint:PI1699|5end_conserved_hypothetical_protein_1616604..1616834_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 668 420 371 57 7 pint:PI1714|3end_ISPg3-related_transposase_1631352..1631502_POSITIVE 405 484 441 75 32 pint:PI1440|3end_conserved_hypothetical_protein_1363009..1363159_POSITIVE 362 499 453 63 8 pint:PI0117|3end_ribonuclease_HI_111314..111464_POSITIVE 356 486 445 56 14 pint:PI2088|3end_conserved_hypothetical_protein;_possible_PAP2_superfamily_protein_2045815..2045965_POSITIVE 343 544 507 63 27 pint:PI1380|3end_conserved_hypothetical_protein_1303242..1303392_POSITIVE 337 59 15 47 6 pint:PI1824|3end_ThiJ/PfpI_family_protein_1765005..1765155_POSITIVE 337 548 507 148 104 pint:PI0519|3end_5'-nucleotidase/2',3'-cyclic_phosphodiesterase_478809..478959_POSITIVE 334 56 13 62 17 pint:PI0358|3end_hypothetical_protein_328105..328255_POSITIVE 326 56 16 91 52 pint:PI1484|3end_conserved_hypothetical_protein_1405223..1405373_POSITIVE 322 59 11 92 34 pint:PI0652|3end_conserved_hypothetical_protein_595792..595942_POSITIVE 320 527 483 147 85 pint:PI0666|3end_chorismate_synthase_610171..610321_POSITIVE 314 484 441 39 3 pint:PI0962|3end_phosphoglycerate_mutase_892702..892852_POSITIVE 310 377 331 66 21 pint:PI0160|3end_conserved_hypothetical_protein_153268..153418_POSITIVE 305 57 23 44 4 pint:PI1698|3end_subtilisin-like_serine_protease_1616669..1616819_POSITIVE 305 545 502 117 59 pint:PI0201|3end_hypothetical_protein_195398..195548_POSITIVE 296 548 501 126 72 pint:PI1541|3end_hypothetical_protein_1461884..1462034_POSITIVE 295 510 462 116 62 pint:PI0366|3end_conserved_hypothetical_protein_337894..338044_POSITIVE 294 57 14 141 94 pint:PI1513|3end_conserved_hypothetical_protein_1432502..1432652_POSITIVE 293 545 505 83 34 pint:PI0607|3end_2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxy_lic_acid_synthase/2-oxoglutarate_decarboxylase_555548..555698_POSITIVE 289 559 520 139 91 pint:PI0330|3end_hypothetical_protein_312545..312695_POSITIVE