Origin IGS:
taagcacaaacgagggtgcatagaacgcccaaacagctgcacactcgttcccaaatcctccactttttacagcaacggctctgtacactgtattcttcagcagcgcacagagccgtttgttttcactattttatagcgttttcactatattctttcttttccttgaatgcagtttgcacctatcaaagtttttattttacaaattatttacacgtaaataaatatttttctacgtgtaagtaataatttctttacgtgtaaataaatatttctttacgtgtaagtaatttgtcagtgttcgataaaaacggcacaaggcgttagagcaagcaagggaatggcatacaaaaaacactcccaaacctatatgacgatgaggtttgggagcgtagaagaaatgtatttgatataaaaaactattttccctaactatgtctttgaaagtcttttctgctgcgctaaattttaaaatgcgttattctttcaatatcaaaagcaatgagcgacagtccattta
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
taaatggactgtcgctcattgcttttgatattgaaagaataacgcattttaaaatttagcgcagcagaaaagactttcaaagacatagttagggaaaatagttttttatatcaaatacatttcttctacgctcccaaacctcatcgtcatataggtttgggagtgttttttgtatgccattcccttgcttgctctaacgccttgtgccgtttttatcgaacactgacaaattacttacacgtaaagaaatatttatttacacgtaaagaaattattacttacacgtagaaaaatatttatttacgtgtaaataatttgtaaaataaaaactttgataggtgcaaactgcattcaaggaaaagaaagaatatagtgaaaacgctataaaatagtgaaaacaaacggctctgtgcgctgctgaagaatacagtgtacagagccgttgctgtaaaaagtggaggatttgggaacgagtgtgcagctgtttgggcgttctatgcaccctcgtttgtgctta

Mask Tandem Repeat Region ================================================
taagcacaaacgagggtgcatagaacgcccaaacagctgcacactcgttcccaaatcctccactttttacagcaacggctctgtacactgtattcttcagcagcgcacagagccgtttgttttcactattttatagcgttttcactatattctttcttttccttgaatgcagtttgcacctatcaaagtttttattttacaaattatttacacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtaatttgtcagtgttcgataaaaacggcacaaggcgttagagcaagcaagggaatggcatacaaaaaacactcccaaacctatatgacgatgaggtttgggagcgtagaagaaatgtatttgatataaaaaactattttccctaactatgtctttgaaagtcttttctgctgcgctaaattttaaaatgcgttattctttcaatatcaaaagcaatgagcgacagtccattta

Find is-nt database================================================
Query_seq: PI1740:PI1741|PI1740:PI1741:DedA family protein:lipid-A-disaccharide synthase:->->:1662377..1662893 517
taagcacaaacgagggtgcatagaacgcccaaacagctgcacactcgttcccaaatcctccactttttacagcaacggctctgtacactgtattcttcagcagcgcacagagccgtttgttttcactattttatagcgttttcactatattctttcttttccttgaatgcagtttgcacctatcaaagtttttattttacaaattatttacacgtaaataaatatttttctacgtgtaagtaataatttctttacgtgtaaataaatatttctttacgtgtaagtaatttgtcagtgttcgataaaaacggcacaaggcgttagagcaagcaagggaatggcatacaaaaaacactcccaaacctatatgacgatgaggtttgggagcgtagaagaaatgtatttgatataaaaaactattttccctaactatgtctttgaaagtcttttctgctgcgctaaattttaaaatgcgttattctttcaatatcaaaagcaatgagcgacagtccattta
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: PI1740:PI1741|PI1740:PI1741:DedA family protein:lipid-A-disaccharide synthase:->->:1662377..1662893 517
taagcacaaacgagggtgcatagaacgcccaaacagctgcacactcgttcccaaatcctccactttttacagcaacggctctgtacactgtattcttcagcagcgcacagagccgtttgttttcactattttatagcgttttcactatattctttcttttccttgaatgcagtttgcacctatcaaagtttttattttacaaattatttacacgtaaataaatatttttctacgtgtaagtaataatttctttacgtgtaaataaatatttctttacgtgtaagtaatttgtcagtgttcgataaaaacggcacaaggcgttagagcaagcaagggaatggcatacaaaaaacactcccaaacctatatgacgatgaggtttgggagcgtagaagaaatgtatttgatataaaaaactattttccctaactatgtctttgaaagtcttttctgctgcgctaaattttaaaatgcgttattctttcaatatcaaaagcaatgagcgacagtccattta
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find nr database================================================
Query_seq: PI1740:PI1741|PI1740:PI1741:DedA family protein:lipid-A-disaccharide synthase:->->:1662377..1662893 517
taagcacaaacgagggtgcatagaacgcccaaacagctgcacactcgttcccaaatcctccactttttacagcaacggctctgtacactgtattcttcagcagcgcacagagccgtttgttttcactattttatagcgttttcactatattctttcttttccttgaatgcagtttgcacctatcaaagtttttattttacaaattatttacacgtaaataaatatttttctacgtgtaagtaataatttctttacgtgtaaataaatatttctttacgtgtaagtaatttgtcagtgttcgataaaaacggcacaaggcgttagagcaagcaagggaatggcatacaaaaaacactcccaaacctatatgacgatgaggtttgggagcgtagaagaaatgtatttgatataaaaaactattttccctaactatgtctttgaaagtcttttctgctgcgctaaattttaaaatgcgttattctttcaatatcaaaagcaatgagcgacagtccattta
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

taagcacaaacgagggtgcatagaacgcccaaacagctgcacactcgttcccaaatcctccactttttacagcaacggctctgtacactgtattcttcagcagcgcacagagccgtttgttttcactattttatagcgttttcactatattctttcttttccttgaatgcagtttgcacctatcaaagtttttattttacaaattatttacacgtaaataaatatttttctacgtgtaagtaataatttctttacgtgtaaataaatatttctttacgtgtaagtaatttgtcagtgttcgataaaaacggcacaaggcgttagagcaagcaagggaatggcatacaaaaaacactcccaaacctatatgacgatgaggtttgggagcgtagaagaaatgtatttgatataaaaaactattttccctaactatgtctttgaaagtcttttctgctgcgctaaattttaaaatgcgttattctttcaatatcaaaagcaatgagcgacagtccattta
Predict ORF larger than 30AA ================================================
Protein_Len: 38	Strand: +	Start: 20	End: 133
................... M  E  R  P  N  S  C  T  L  V  P  K  S  S  T  F  Y  S  N  G  S  V  H  C  I  L  Q  Q  R  T  E  P  F  V  F  T  I  L ................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 46	Strand: +	Start: 81	End: 218
................................................................................ M  Y  T  V  F  F  S  S  A  Q  S  R  L  F  S  L  F  Y  S  V  F  T  I  F  F  L  F  L  E  C  S  L  H  L  S  K  F  L  F  Y  K  L  F  T  R  K ...........................................................................................................................................................................................................................................................................................................
Protein_Len: 60	Strand: +	Start: 16	End: 240
............... M  H  R  T  P  K  Q  L  H  T  R  S  Q  I  L  H  F  L  Q  Q  R  L  C  T  L  Y  S  S  A  A  H  R  A  V  C  F  H  Y  F  I  A  F  S  L  Y  S  F  F  S  L  N  A  V  C  T  Y  Q  S  F  Y .....................................................................................................................................................................................................................................................................................
Protein_Len: 41	Strand: +	Start: 287	End: 409
.............................................................................................................................................................................................................................................................................................. M  C  Q  C  S  I  K  T  A  Q  G  V  R  A  S  K  G  M  A  Y  K  K  H  S  Q  T  Y  M  T  M  R  F  G  S  V  E  E  M  Y  L  I ............................................................................................................
Protein_Len: 60	Strand: -	Start: 233	End: 472
........................................................................................................................................................................................................................................ L  T  R  Y  F  R  C  L  A  N  S  C  A  L  S  H  C  V  F  F  V  G  L  G  I  H  R  H  P  K  P  A  Y  F  F  H  I  Q  Y  L  F  S  N  E  R  V  I  D  K  F  T  K  E  A  A  S  F  K  L  M .............................................
Protein_Len: 36	Strand: -	Start: 3	End: 110
.. A  C  V  L  T  C  L  V  G  L  C  S  C  V  R  E  W  I  R  W  K  K  C  C  R  S  Q  V  S  Y  E  E  A  A  C  M .......................................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 34	Strand: -	Start: 2	End: 103
. L  V  F  S  P  A  Y  F  A  W  V  A  A  C  E  N  G  F  G  G  S  K  V  A  V  A  R  Y  V  T  N  K  L  M ..............................................................................................................................................................................................................................................................................................................................................................................................................................

taagcacaaacgagggtgcatagaacgcccaaacagctgcacactcgttcccaaatcctccactttttacagcaacggctctgtacactgtattcttcagcagcgcacagagccgtttgttttcactattttatagcgttttcactatattctttcttttccttgaatgcagtttgcacctatcaaagtttttattttacaaattatttacacgtaaataaatatttttctacgtgtaagtaataatttctttacgtgtaaataaatatttctttacgtgtaagtaatttgtcagtgttcgataaaaacggcacaaggcgttagagcaagcaagggaatggcatacaaaaaacactcccaaacctatatgacgatgaggtttgggagcgtagaagaaatgtatttgatataaaaaactattttccctaactatgtctttgaaagtcttttctgctgcgctaaattttaaaatgcgttattctttcaatatcaaaagcaatgagcgacagtccattta
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================
PromScan Matrix: RpoD-17	Strand: -	Score: 81	Start: 194	End: 223
.................................................................................................................................................................................................ATTTATTTACGTGTAAATAATTTGTAAAAT......................................................................................................................................................................................................................................................................................................

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

taagcacaaacgagggtgcatagaacgcccaaacagctgcacactcgttcccaaatcctccactttttacagcaacggctctgtacactgtattcttcagcagcgcacagagccgtttgttttcactattttatagcgttttcactatattctttcttttccttgaatgcagtttgcacctatcaaagtttttattttacaaattatttacacgtaaataaatatttttctacgtgtaagtaataatttctttacgtgtaaataaatatttctttacgtgtaagtaatttgtcagtgttcgataaaaacggcacaaggcgttagagcaagcaagggaatggcatacaaaaaacactcccaaacctatatgacgatgaggtttgggagcgtagaagaaatgtatttgatataaaaaactattttccctaactatgtctttgaaagtcttttctgctgcgctaaattttaaaatgcgttattctttcaatatcaaaagcaatgagcgacagtccattta
Predict TransTerm conf > 70================================================
TransTerm Strand: +	Conf: 100	HP_score: -10.0	Tail_Score: -4.71418	Start: 76	End: 115	Full_Region: CACTTTTTACAGCAA CGGCTCTGTACACTGT ATTCTTCA GCAGCGCACAGAGCCG TTTGTTTTCACTATT
...........................................................................CGGCTCTGTACACTGTATTCTTCAGCAGCGCACAGAGCCG..................................................................................................................................................................................................................................................................................................................................................................................................................
TransTerm Strand: -	Conf: 93	HP_score: -13.7	Tail_Score: -3.2614	Start: 76	End: 115	Full_Region: aatagtgaaaacaaa cggctctgtgcgctg ctgaagaata cagtgtacagagccg ttgctgtaaaaagtg
...........................................................................cggctctgtgcgctgctgaagaatacagtgtacagagccg..................................................................................................................................................................................................................................................................................................................................................................................................................
TransTerm Strand: -	Conf: 73	HP_score: -7.4	Tail_Score: -3.89346	Start: 204	End: 243	Full_Region: cacgtaaagaaatta ttacttacacgtagaaaa atat ttatttacgtgtaaataa tttgtaaaataaaaa
...........................................................................................................................................................................................................ttacttacacgtagaaaaatatttatttacgtgtaaataa..................................................................................................................................................................................................................................................................................
TransTerm Strand: -	Conf: 100	HP_score: -11.1	Tail_Score: -5.37043	Start: 353	End: 389	Full_Region: aatacatttcttcta cgctcccaaacctcat cgtcat ataggtttgggagtg ttttttgtatgccat
................................................................................................................................................................................................................................................................................................................................................................cgctcccaaacctcatcgtcatataggtttgggagtg................................................................................................................................

Find igs database================================================
Query_seq: PI1740:PI1741|PI1740:PI1741:DedA family protein:lipid-A-disaccharide synthase:->->:1662377..1662893 517
taagcacaaacgagggtgcatagaacgcccaaacagctgcacactcgttcccaaatcctccactttttacagcaacggctctgtacactgtattcttcagcagcgcacagagccgtttgttttcactattttatagcgttttcactatattctttcttttccttgaatgcagtttgcacctatcaaagtttttattttacaaattatttacacgtaaataaatatttttctacgtgtaagtaataatttctttacgtgtaaataaatatttctttacgtgtaagtaatttgtcagtgttcgataaaaacggcacaaggcgttagagcaagcaagggaatggcatacaaaaaacactcccaaacctatatgacgatgaggtttgggagcgtagaagaaatgtatttgatataaaaaactattttccctaactatgtctttgaaagtcttttctgctgcgctaaattttaaaatgcgttattctttcaatatcaaaagcaatgagcgacagtccattta
Intra-Species Hit: Count: 3	Min: 1	Max: 517	Len: 517
Subject: pint_PI1740_PI1741|DedA family protein:lipid-A-disaccharide synthase|POSITIVE:POSITIVE|[1662377,1662893]|517
HSP  1	e-value: 0.0	bit: 1025.0	Len: 517	Query Start:1	Query End:517	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 517
taagcacaaacgagggtgcatagaacgcccaaacagctgcacactcgttcccaaatcctccactttttacagcaacggctctgtacactgtattcttcagcagcgcacagagccgtttgttttcactattttatagcgttttcactatattctttcttttccttgaatgcagtttgcacctatcaaagtttttattttacaaattatttacacgtaaataaatatttttctacgtgtaagtaataatttctttacgtgtaaataaatatttctttacgtgtaagtaatttgtcagtgttcgataaaaacggcacaaggcgttagagcaagcaagggaatggcatacaaaaaacactcccaaacctatatgacgatgaggtttgggagcgtagaagaaatgtatttgatataaaaaactattttccctaactatgtctttgaaagtcttttctgctgcgctaaattttaaaatgcgttattctttcaatatcaaaagcaatgagcgacagtccattta
taagcacaaacgagggtgcatagaacgcccaaacagctgcacactcgttcccaaatcctccactttttacagcaacggctctgtacactgtattcttcagcagcgcacagagccgtttgttttcactattttatagcgttttcactatattctttcttttccttgaatgcagtttgcacctatcaaagtttttattttacaaattatttacacgtaaataaatatttttctacgtgtaagtaataatttctttacgtgtaaataaatatttctttacgtgtaagtaatttgtcagtgttcgataaaaacggcacaaggcgttagagcaagcaagggaatggcatacaaaaaacactcccaaacctatatgacgatgaggtttgggagcgtagaagaaatgtatttgatataaaaaactattttccctaactatgtctttgaaagtcttttctgctgcgctaaattttaaaatgcgttattctttcaatatcaaaagcaatgagcgacagtccattta

Subject: pint_PI1476_PI1477|acyl-CoA synthase/O-succinylbenzoic acid-CoA ligase:TonB-dependent outer membrane receptor|POSITIVE:POSITIVE|[1399465,1399873]|409
HSP  1	e-value: 4.0E-16	bit: 87.7	Len: 100	Query Start:196	Query End:295	Subject Strand: NEGATIVE	Subject Start: 163	Subject End: 262
...................................................................................................................................................................................................tttacaaattatttacacgtaaataaatatttttctacgtgtaagtaataatttctttacgtgtaaataaatatttctttacgtgtaagtaatttgtcag..............................................................................................................................................................................................................................
...................................................................................................................................................................................................tttacaaattacttacgtgtagaaaaatatttatttacacgtaagtaataatttctctacacgtaaataaatatttctttacgtgtaaataatttttcag..............................................................................................................................................................................................................................
HSP  2	e-value: 1.0E-12	bit: 75.8	Len: 101	Query Start:201	Query End:301	Subject Strand: POSITIVE	Subject Start: 168	Subject End: 268
........................................................................................................................................................................................................aaattatttacacgtaaataaatatttttctacgtgta-agtaataatttctttacgtgtaaataaatatttctttacgtgtaagtaatttgtcagtgttcg........................................................................................................................................................................................................................
........................................................................................................................................................................................................aaattatttacacgtaaagaaatatttatttacgtgtagagaaattattac-ttacgtgtaaataaatatttttctacacgtaagtaatttgtaaatgttcg........................................................................................................................................................................................................................

Subject: pint_PI1571_PI1573|surface antigen BspA:transcription-repair coupling factor|POSITIVE:POSITIVE|[1495841,1496568]|728
HSP  1	e-value: 1.0E-12	bit: 75.8	Len: 101	Query Start:201	Query End:301	Subject Strand: POSITIVE	Subject Start: 435	Subject End: 535
........................................................................................................................................................................................................aaattatttacacgtaaataaatatttttctacgtgta-agtaataatttctttacgtgtaaataaatatttctttacgtgtaagtaatttgtcagtgttcg........................................................................................................................................................................................................................
........................................................................................................................................................................................................aaattatttacacgtaaataaatatttctttacgtgtatggaaattattac-ttacgtgtaaataaatatttttctacacgcaagtaatttgtcaatgttcg........................................................................................................................................................................................................................
HSP  2	e-value: 5.0E-6	bit: 54.0	Len: 55	Query Start:236	Query End:290	Subject Strand: NEGATIVE	Subject Start: 435	Subject End: 489
...........................................................................................................................................................................................................................................gtaagtaataatttctttacgtgtaaataaatatttctttacgtgtaagtaattt...................................................................................................................................................................................................................................
...........................................................................................................................................................................................................................................gtaagtaataatttccatacacgtaaagaaatatttatttacgtgtaaataattt...................................................................................................................................................................................................................................

Inter-species Hit: Count: 0

Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
UAAGCACAAACGAGGGUGCAUAGAACGCCCAAACAGCUGCACACUCGUUCCCAAAUCCUCCACUUUUUACAGCAACGGCUCUGUACACUGUAUUCUUCAGCAGCGCACAGAGCCGUUUGUUUUCACUAUUUUAUAGCGUUUUCACUAUAUUCUUUCUUUUCCUUGAAUGCAGUUUGCACCUAUCAAAGUUUUUAUUUUACAAAUUAUUUACACGUAAAUAAAUAUUUUUCUACGUGUAAGUAAUAAUUUCUUUACGUGUAAAUAAAUAUUUCUUUACGUGUAAGUAAUUUGUCAGUGUUCGAUAAAAACGGCACAAGGCGUUAGAGCAAGCAAGGGAAUGGCAUACAAAAAACACUCCCAAACCUAUAUGACGAUGAGGUUUGGGAGCGUAGAAGAAAUGUAUUUGAUAUAAAAAACUAUUUUCCCUAACUAUGUCUUUGAAAGUCUUUUCUGCUGCGCUAAAUUUUAAAAUGCGUUAUUCUUUCAAUAUCAAAAGCAAUGAGCGACAGUCCAUUUA
...(((..((((((.(((((......((.......))))))).)))))).....................((((((((((((((.(.((((........)))).).))))))))).)))))............((((((...((.......(((((.((((((((..(((.....((.(((......(((((((((((((((((((((((((((((((.((((((((...((((((((((.((....)).))))))))))...)))))))).)))))))))))))))))))).)).....)))))))))......))).))....)))..)))))))).((((((......((.(((((((((((.(((....)))))))))))))).)).(((((...((.(((......))).))..)))))......))))))...))))).......))..))))))..........))).......................((((..(....)..)))).. (-141.14)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
UAAAUGGACUGUCGCUCAUUGCUUUUGAUAUUGAAAGAAUAACGCAUUUUAAAAUUUAGCGCAGCAGAAAAGACUUUCAAAGACAUAGUUAGGGAAAAUAGUUUUUUAUAUCAAAUACAUUUCUUCUACGCUCCCAAACCUCAUCGUCAUAUAGGUUUGGGAGUGUUUUUUGUAUGCCAUUCCCUUGCUUGCUCUAACGCCUUGUGCCGUUUUUAUCGAACACUGACAAAUUACUUACACGUAAAGAAAUAUUUAUUUACACGUAAAGAAAUUAUUACUUACACGUAGAAAAAUAUUUAUUUACGUGUAAAUAAUUUGUAAAAUAAAAACUUUGAUAGGUGCAAACUGCAUUCAAGGAAAAGAAAGAAUAUAGUGAAAACGCUAUAAAAUAGUGAAAACAAACGGCUCUGUGCGCUGCUGAAGAAUACAGUGUACAGAGCCGUUGCUGUAAAAAGUGGAGGAUUUGGGAACGAGUGUGCAGCUGUUUGGGCGUUCUAUGCACCCUCGUUUGUGCUUA
.((((((.(((((((((....(((((......))))).....(.((..((...((((...((((((.......(((((..(((((.(((.((((((.((((....)))).....(((((........((((((((((((((...........))))))))))))))....)))))....)))))).))))).)))....((((((((.((((((((((((.....((((((((.(((((((((((.((((((((.(((((..((((..((....))..))))..))))).)))))))).))))))))))).))))))))...........))))))))....)))).)))..)))))....)))))..(((((((....))))))).....((....))..((((((((((((((((..........))))))))))))))))))))))...))))....))..)).)...))))).))))))))))(((.((.....)).)))............. (-153.59)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
555	280	231	157	108	pint:PI0130|5end_hypothetical_protein_122032..122262_POSITIVE
549	280	231	202	153	pint:PI0115|5end_hypothetical_protein_108062..108292_POSITIVE
549	280	231	188	139	pint:PI0111|5end_hypothetical_protein_108048..108278_POSITIVE
549	280	231	153	104	pint:PI0112|5end_hypothetical_protein_108013..108243_POSITIVE
460	280	231	131	82	pint:PI0312|5end_hypothetical_protein_294591..294821_POSITIVE
439	260	211	149	100	pint:PI0619|5end_hypothetical_protein_569364..569594_POSITIVE
435	299	251	154	104	pint:PI1462|5end_hypothetical_protein_1385094..1385324_POSITIVE
399	243	201	215	173	pint:PI0173|5end_hypothetical_protein_165305..165535_POSITIVE
384	299	251	169	121	pint:PI0983|5end_hypothetical_protein_909750..909980_POSITIVE
382	243	202	98	57	pint:PI1450|5end_hypothetical_protein_1372683..1372913_POSITIVE
377	239	199	229	189	pint:PI0599|5end_hypothetical_protein_547376..547606_POSITIVE
366	119	72	65	3	pint:PI2017|5end_conserved_hypothetical_protein_1974862..1975092_POSITIVE
364	385	341	128	81	pint:PI0789|5end_NAD-utilizing_dehydrogenase_726728..726958_POSITIVE
362	390	347	196	154	pint:PI0302|5end_hypothetical_protein_286325..286555_POSITIVE
359	347	308	73	36	pint:PI0780|5end_DNA_gyrase,_subunit_A_(DNA_topoisomerase_(ATP-hydrolyzing))_715902..716132_POSITIVE
355	117	71	153	106	pint:PI1779|5end_16S_rRNA_processing_protein_1711335..1711565_POSITIVE
353	250	201	231	182	pint:PI0311|5end_hypothetical_protein_294721..294951_POSITIVE
347	243	201	120	78	pint:PI0648|5end_hypothetical_protein_589448..589678_POSITIVE
347	232	200	231	199	pint:PI0114|5end_hypothetical_protein_108139..108369_POSITIVE
338	110	62	228	179	pint:PI0288|5end_hypothetical_protein_(possible_ISPg3-related_transposase)_272272..272502_POSITIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
513	289	241	56	8	pint:PI0598|3end_hypothetical_protein_547233..547383_POSITIVE
470	280	231	116	67	pint:PI2105|3end_hypothetical_protein_2059586..2059736_POSITIVE
435	299	251	53	3	pint:PI1461|3end_conserved_hypothetical_protein_1385073..1385223_POSITIVE
399	243	201	68	26	pint:PI0172|3end_ISPg3-related_transposase_165238..165388_POSITIVE
397	280	231	50	1	pint:PI2106|3end_hypothetical_protein_2059498..2059648_POSITIVE
377	316	273	47	4	pint:PI0491|3end_hypothetical_protein_451227..451377_POSITIVE
364	385	341	109	62	pint:PI0788|3end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726789..726939_POSITIVE
357	290	246	50	6	pint:PI2160|3end_hypothetical_protein_2108357..2108507_POSITIVE
355	117	71	137	90	pint:PI1778|3end_UDP-N-acetylglucosamine_1-carboxyvinyltransferase_1711399..1711549_POSITIVE
353	240	193	51	6	pint:PI1314|3end_hypothetical_protein_1231423..1231573_POSITIVE
339	115	71	122	78	pint:PI1380|3end_conserved_hypothetical_protein_1303242..1303392_POSITIVE
329	113	75	134	94	pint:PI0933|3end_hypothetical_protein_865884..866034_POSITIVE
328	280	231	98	49	pint:PI0725|3end_hypothetical_protein_658933..659083_POSITIVE
326	347	310	107	61	pint:PI0879|3end_hypothetical_protein_814051..814201_POSITIVE
325	210	163	147	101	pint:PI2039|3end_hypothetical_protein_1992991..1993141_POSITIVE
321	120	77	75	32	pint:PI0341|3end_conserved_hypothetical_protein_317615..317765_POSITIVE
320	118	76	112	61	pint:PI0819|3end_hypothetical_protein_759919..760069_POSITIVE
315	60	11	105	60	pint:PI0778|3end_hypothetical_protein_714885..715035_POSITIVE
313	347	306	72	35	pint:PI0554|3end_hypothetical_protein_504599..504749_POSITIVE
312	297	254	54	11	pint:PI0808|3end_ISPg3-related_transposase_746457..746607_POSITIVE