Origin IGS: attgccgttattgcccgttgtttcttcgttcagtgggttttcaccctcgttgttttcaattatcttatcgtcgtccataaacagttggatagtctctatttttgaggctcaaaggtacgaagaaaactcgaaacatgcaaattagagcagcgaaacaaacatctatttattataggtgaaaggaagccataatgaatctgaacggagttgatgttatttcccctgcttgttttcttctttttcttaggggattgtattatctttgtacgtagaaaatagaattatttaagctttgagaaaaatttatcagaactttgataataatttatctaagctttgataaatcattatcaaagcttagataattctacagaatacgtatagaattatgattttgtaggcatctaaatatgattttatacgtatctaaacagaaaaggaatcaagaaagggaacattgaaaatacaaacaagctcatcaggcaatacataccaaagaaagcaaactttgatgatttcacagacaaaaagattgcgaccatacagaagaaaataaacagaagacctaaattttcaaacaccaaaatgcgagttctacagaaaaatataataattttgcacttgctgcttgactctacgaattaattataacgtcattctttcgcaaactttcacaacttttagttcccttattccgttaaaaagccgtaactttgtgccaaattccgaataaacaaagataaaagaaatatatt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aatatatttcttttatctttgtttattcggaatttggcacaaagttacggctttttaacggaataagggaactaaaagttgtgaaagtttgcgaaagaatgacgttataattaattcgtagagtcaagcagcaagtgcaaaattattatatttttctgtagaactcgcattttggtgtttgaaaatttaggtcttctgtttattttcttctgtatggtcgcaatctttttgtctgtgaaatcatcaaagtttgctttctttggtatgtattgcctgatgagcttgtttgtattttcaatgttccctttcttgattccttttctgtttagatacgtataaaatcatatttagatgcctacaaaatcataattctatacgtattctgtagaattatctaagctttgataatgatttatcaaagcttagataaattattatcaaagttctgataaatttttctcaaagcttaaataattctattttctacgtacaaagataatacaatcccctaagaaaaagaagaaaacaagcaggggaaataacatcaactccgttcagattcattatggcttcctttcacctataataaatagatgtttgtttcgctgctctaatttgcatgtttcgagttttcttcgtacctttgagcctcaaaaatagagactatccaactgtttatggacgacgataagataattgaaaacaacgagggtgaaaacccactgaacgaagaaacaacgggcaataacggcaat Mask Tandem Repeat Region ================================================ attgccgttattgcccgttgtttcttcgttcagtgggttttcaccctcgttgttttcaattatcttatcgtcgtccataaacagttggatagtctctatttttgaggctcaaaggtacgaagaaaactcgaaacatgcaaattagagcagcgaaacaaacatctatttattataggtgaaaggaagccataatgaatctgaacggagttgatgttatttcccctgcttgttttcttctttttcttaggggattgtattatctttgtacgtagaaaatagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntctacagaatacgtatagaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagaaaaggaatcaagaaagggaacattgaaaatacaaacaagctcatcaggcaatacataccaaagaaagcaaactttgatgatttcacagacaaaaagattgcgaccatacagaagaaaataaacagaagacctaaattttcaaacaccaaaatgcgagttctacagaaaaatataataattttgcacttgctgcttgactctacgaattaattataacgtcattctttcgcaaactttcacaacttttagttcccttattccgttaaaaagccgtaactttgtgccaaattccgaataaacaaagataaaagaaatatatt Find is-nt database================================================ Query_seq: PI1736:PI1737|PI1736:PI1737:topoisomerase IV, subunit A:glycyl-tRNA synthetase:->->:1657151..1657905 755 attgccgttattgcccgttgtttcttcgttcagtgggttttcaccctcgttgttttcaattatcttatcgtcgtccataaacagttggatagtctctatttttgaggctcaaaggtacgaagaaaactcgaaacatgcaaattagagcagcgaaacaaacatctatttattataggtgaaaggaagccataatgaatctgaacggagttgatgttatttcccctgcttgttttcttctttttcttaggggattgtattatctttgtacgtagaaaatagaattatttaagctttgagaaaaatttatcagaactttgataataatttatctaagctttgataaatcattatcaaagcttagataattctacagaatacgtatagaattatgattttgtaggcatctaaatatgattttatacgtatctaaacagaaaaggaatcaagaaagggaacattgaaaatacaaacaagctcatcaggcaatacataccaaagaaagcaaactttgatgatttcacagacaaaaagattgcgaccatacagaagaaaataaacagaagacctaaattttcaaacaccaaaatgcgagttctacagaaaaatataataattttgcacttgctgcttgactctacgaattaattataacgtcattctttcgcaaactttcacaacttttagttcccttattccgttaaaaagccgtaactttgtgccaaattccgaataaacaaagataaaagaaatatatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1736:PI1737|PI1736:PI1737:topoisomerase IV, subunit A:glycyl-tRNA synthetase:->->:1657151..1657905 755 attgccgttattgcccgttgtttcttcgttcagtgggttttcaccctcgttgttttcaattatcttatcgtcgtccataaacagttggatagtctctatttttgaggctcaaaggtacgaagaaaactcgaaacatgcaaattagagcagcgaaacaaacatctatttattataggtgaaaggaagccataatgaatctgaacggagttgatgttatttcccctgcttgttttcttctttttcttaggggattgtattatctttgtacgtagaaaatagaattatttaagctttgagaaaaatttatcagaactttgataataatttatctaagctttgataaatcattatcaaagcttagataattctacagaatacgtatagaattatgattttgtaggcatctaaatatgattttatacgtatctaaacagaaaaggaatcaagaaagggaacattgaaaatacaaacaagctcatcaggcaatacataccaaagaaagcaaactttgatgatttcacagacaaaaagattgcgaccatacagaagaaaataaacagaagacctaaattttcaaacaccaaaatgcgagttctacagaaaaatataataattttgcacttgctgcttgactctacgaattaattataacgtcattctttcgcaaactttcacaacttttagttcccttattccgttaaaaagccgtaactttgtgccaaattccgaataaacaaagataaaagaaatatatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 44 Min: 346 Max: 570 Len: 225 Subject: UniRef90_P37247 Cluster: Transposase for insertion sequence element IS4351; n=2; Bacteroides fragilis|Rep: Transposase for insertion sequence element IS4351 - Bacteroides fragilis HSP 1 e-value: 1.0E-6 bit: 50.1 Len: 225 Query Start:346 Query End:570 Subject Strand: null Subject Start: 226 Subject End: 301 ......................................................................................................................................................................................................................................................................................................................................................... H Y Q S L D N S T E Y V * N Y D F V G - I * I * F Y T Y L N R K G I K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................................... H T I T A D N G K E F A K H E E I A Q K L E I K F Y F C K P Y H S W E R G A N E N T N G L I R Q Y I P K G K D F S E V T N K Q I K W I E N K L N N R P R ......................................................................................................................................................................................... Subject: IS|IS4351.aa1 HSP 1 e-value: 1.0E-6 bit: 50.1 Len: 225 Query Start:346 Query End:570 Subject Strand: null Subject Start: 226 Subject End: 301 ......................................................................................................................................................................................................................................................................................................................................................... H Y Q S L D N S T E Y V * N Y D F V G - I * I * F Y T Y L N R K G I K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ......................................................................................................................................................................................................................................................................................................................................................... H T I T A D N G K E F A K H E E I A Q K L E I K F Y F C K P Y H S W E R G A N E N T N G L I R Q Y I P K G K D F S E V T N K Q I K W I E N K L N N R P R ......................................................................................................................................................................................... Subject: gi|91215770|ref|ZP_01252740.1| Transposase, IS30 family protein [Psychroflexus torquis ATCC 700755] HSP 1 e-value: 3.0E-6 bit: 49.3 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 275 Subject End: 316 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E R G S N E N L N G L I R Q Y L P K K T D F T K I T D Y Q V K Q I Q E K L N L R P R ......................................................................................................................................................................................... Subject: gi|91217031|ref|ZP_01253994.1| Transposase, IS30 family protein [Psychroflexus torquis ATCC 700755] HSP 1 e-value: 3.0E-6 bit: 49.3 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 275 Subject End: 316 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E R G S N E N L N G L I R Q Y L P K K T D F T K I T D Y Q V K Q I Q E K L N L R P R ......................................................................................................................................................................................... Subject: gi|91218069|ref|ZP_01255020.1| Transposase, IS30 family protein [Psychroflexus torquis ATCC 700755] HSP 1 e-value: 3.0E-6 bit: 49.3 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 275 Subject End: 316 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E R G S N E N L N G L I R Q Y L P K K T D F T K I T D Y Q V K Q I Q E K L N L R P R ......................................................................................................................................................................................... Subject: gi|91218395|ref|ZP_01255338.1| Transposase, IS30 family protein [Psychroflexus torquis ATCC 700755] HSP 1 e-value: 3.0E-6 bit: 49.3 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 275 Subject End: 316 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E R G S N E N L N G L I R Q Y L P K K T D F T K I T D Y Q V K Q I Q E K L N L R P R ......................................................................................................................................................................................... Subject: UniRef90_Q1VPP6 Cluster: Transposase, IS30 family protein; n=1; Psychroflexus torquis ATCC 700755|Rep: Transposase, IS30 family protein - Psychroflexus torquis ATCC 700755 HSP 1 e-value: 3.0E-6 bit: 49.3 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 275 Subject End: 316 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E R G S N E N L N G L I R Q Y L P K K T D F T K I T D Y Q V K Q I Q E K L N L R P R ......................................................................................................................................................................................... Subject: gi|92089153|ref|ZP_01274105.1| Integrase, catalytic region [Lactobacillus reuteri 100-23] HSP 1 e-value: 6.0E-6 bit: 48.1 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 280 Subject End: 321 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ Q R G T N E N T N G L I R E Y F P K R T D I D N Y T E Q D V E H C Q K Q L N Q R P R ......................................................................................................................................................................................... Subject: gi|116334292|ref|YP_795819.1| Transposase, IS30 family [Lactobacillus brevis ATCC 367] HSP 1 e-value: 6.0E-6 bit: 48.1 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 253 Subject End: 294 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ Q R G T N E N T N G L I R E Y F P K R T D I D N Y T E Q D V E H C Q K Q L N Q R P R ......................................................................................................................................................................................... Subject: gi|116334297|ref|YP_795824.1| Transposase, IS30 family [Lactobacillus brevis ATCC 367] HSP 1 e-value: 6.0E-6 bit: 48.1 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 253 Subject End: 294 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ Q R G T N E N T N G L I R E Y F P K R T D I D N Y T E Q D V E H C Q K Q L N Q R P R ......................................................................................................................................................................................... Subject: gi|116334374|ref|YP_795901.1| Transposase, IS30 family [Lactobacillus brevis ATCC 367] HSP 1 e-value: 6.0E-6 bit: 48.1 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 253 Subject End: 294 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ Q R G T N E N T N G L I R E Y F P K R T D I D N Y T E Q D V E H C Q K Q L N Q R P R ......................................................................................................................................................................................... Subject: gi|116334503|ref|YP_796030.1| Transposase, IS30 family [Lactobacillus brevis ATCC 367] HSP 1 e-value: 6.0E-6 bit: 48.1 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 253 Subject End: 294 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ Q R G T N E N T N G L I R E Y F P K R T D I D N Y T E Q D V E H C Q K Q L N Q R P R ......................................................................................................................................................................................... Subject: gi|15676151|ref|NP_273282.1| transposase, IS30 family [Neisseria meningitidis MC58] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|15676354|ref|NP_273490.1| transposase, IS30 family [Neisseria meningitidis MC58] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|15676535|ref|NP_273678.1| transposase, IS30 family [Neisseria meningitidis MC58] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|15676703|ref|NP_273847.1| transposase, IS30 family [Neisseria meningitidis MC58] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|15676730|ref|NP_273875.1| transposase, IS30 family [Neisseria meningitidis MC58] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|15676806|ref|NP_273951.1| transposase, IS30 family [Neisseria meningitidis MC58] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|15676910|ref|NP_274056.1| transposase, IS30 family [Neisseria meningitidis MC58] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|15676936|ref|NP_274084.1| transposase, IS30 family [Neisseria meningitidis MC58] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|15676979|ref|NP_274130.1| transposase, IS30 family [Neisseria meningitidis MC58] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|15677122|ref|NP_274274.1| transposase, IS30 family [Neisseria meningitidis MC58] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|15677128|ref|NP_274281.1| transposase, IS30 family [Neisseria meningitidis MC58] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|15677560|ref|NP_274716.1| transposase, IS30 family [Neisseria meningitidis MC58] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|15677611|ref|NP_274770.1| transposase, IS30 family [Neisseria meningitidis MC58] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|15677961|ref|NP_275133.1| transposase, IS30 family [Neisseria meningitidis MC58] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|15793066|ref|NP_282888.1| IS1655 transposase [Neisseria meningitidis Z2491] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|15793743|ref|NP_283565.1| IS1655 transposase [Neisseria meningitidis Z2491] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|15794381|ref|NP_284203.1| IS1655 transposase [Neisseria meningitidis Z2491] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|15794386|ref|NP_284208.1| IS1655 transposase [Neisseria meningitidis Z2491] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|15794704|ref|NP_284526.1| IS1655 transposase [Neisseria meningitidis Z2491] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|121634730|ref|YP_974975.1| putative transposase for IS1655 [Neisseria meningitidis FAM18] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|121634794|ref|YP_975039.1| putative transposase for IS1655 [Neisseria meningitidis FAM18] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|121634817|ref|YP_975062.1| transposase for IS1655 [Neisseria meningitidis FAM18] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|121634859|ref|YP_975104.1| transposase for IS1655 [Neisseria meningitidis FAM18] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|121635133|ref|YP_975378.1| Putative transposase for IS1655 [Neisseria meningitidis FAM18] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|121635571|ref|YP_975816.1| putative transposase for IS1655 [Neisseria meningitidis FAM18] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|121634168|ref|YP_974413.1| insertion element IS1655 transposase [Neisseria meningitidis FAM18] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|121635268|ref|YP_975513.1| putative insertion element is1655 transposase (fragment) [Neisseria meningitidis FAM18] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 233 Subject End: 274 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|121635671|ref|YP_975916.1| insertion element IS1655 transposase [Neisseria meningitidis FAM18] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|121635791|ref|YP_976036.1| insertion element IS1655 transposase [Neisseria meningitidis FAM18] HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: IS|IS1655.aa1 HSP 1 e-value: 7.0E-6 bit: 47.8 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 259 Subject End: 300 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ E K G L N E N T N G L I R Q Y F P K Q T D F R N I S D R E I R R V Q D E L N H R P R ......................................................................................................................................................................................... Subject: gi|91218400|ref|ZP_01255343.1| transposase for IS1655 [Psychroflexus torquis ATCC 700755] HSP 1 e-value: 1.0E-5 bit: 47.4 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 98 Subject End: 139 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K Q G S N E N L N G L I R Q Y L P K K T D F T K I T D Y Q V K Q I Q E K L N L R S R ......................................................................................................................................................................................... Subject: UniRef90_Q1VPP1 Cluster: Transposase for IS1655; n=1; Psychroflexus torquis ATCC 700755|Rep: Transposase for IS1655 - Psychroflexus torquis ATCC 700755 HSP 1 e-value: 1.0E-5 bit: 47.4 Len: 126 Query Start:445 Query End:570 Subject Strand: null Subject Start: 98 Subject End: 139 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K ......................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................ K Q G S N E N L N G L I R Q Y L P K K T D F T K I T D Y Q V K Q I Q E K L N L R S R ......................................................................................................................................................................................... Find nr database================================================ Query_seq: PI1736:PI1737|PI1736:PI1737:topoisomerase IV, subunit A:glycyl-tRNA synthetase:->->:1657151..1657905 755 attgccgttattgcccgttgtttcttcgttcagtgggttttcaccctcgttgttttcaattatcttatcgtcgtccataaacagttggatagtctctatttttgaggctcaaaggtacgaagaaaactcgaaacatgcaaattagagcagcgaaacaaacatctatttattataggtgaaaggaagccataatgaatctgaacggagttgatgttatttcccctgcttgttttcttctttttcttaggggattgtattatctttgtacgtagaaaatagaattatttaagctttgagaaaaatttatcagaactttgataataatttatctaagctttgataaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcaaacaccaaaatgcgagttctacagaaaaatataataattttgcacttgctgcttgactctacgaattaattataacgtcattctttcgcaaactttcacaacttttagttcccttattccgttaaaaagccgtaactttgtgccaaattccgaataaacaaagataaaagaaatatatt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 attgccgttattgcccgttgtttcttcgttcagtgggttttcaccctcgttgttttcaattatcttatcgtcgtccataaacagttggatagtctctatttttgaggctcaaaggtacgaagaaaactcgaaacatgcaaattagagcagcgaaacaaacatctatttattataggtgaaaggaagccataatgaatctgaacggagttgatgttatttcccctgcttgttttcttctttttcttaggggattgtattatctttgtacgtagaaaatagaattatttaagctttgagaaaaatttatcagaactttgataataatttatctaagctttgataaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcaaacaccaaaatgcgagttctacagaaaaatataataattttgcacttgctgcttgactctacgaattaattataacgtcattctttcgcaaactttcacaacttttagttcccttattccgttaaaaagccgtaactttgtgccaaattccgaataaacaaagataaaagaaatatatt Predict ORF larger than 30AA ================================================ Protein_Len: 34 Strand: + Start: 1 End: 102 M A V I A R C F F V Q W V F T L V V F N Y L I V V H K Q L D S L Y F ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 47 Strand: + Start: 2 End: 142 . M P L L P V V S S F S G F S P S L F S I I L S S S I N S W I V S I F E A Q R Y E E N S K H A N ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: + Start: 458 End: 553 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M K I Q T S S S G N T Y Q R K Q T L M I S Q T K R L R P Y R R K .......................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 442 End: 642 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................... M K K G N I E N T N K L I R Q Y I P K K A N F D D F T D K K I A T I Q K K I N R R P K F S N T K M R V L Q K N I I I L H ................................................................................................................. Protein_Len: 34 Strand: + Start: 629 End: 730 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M T L R I N Y N V I L S Q T F T T F S S L I P L K S R N F V P N S E ......................... Protein_Len: 34 Strand: - Start: 649 End: 750 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L T M R E C V K V V K L E R I G N F L R L K T G F E S Y V F I F S M ..... Protein_Len: 39 Strand: - Start: 430 End: 546 ............................................................................................................................................................................................................................................................................................................................................................................................................................................. V S F S D L F P V N F I C V L E D P L V Y W L F C V K I I E C V F L N R G Y M ................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 420 End: 614 ................................................................................................................................................................................................................................................................................................................................................................................................................................... F P I L F P F M S F V F L S M L C Y M G F F A F K S S K V S L F I A V M C F F I F L L G L N E F V L I R T R C F F I I M ............................................................................................................................................. Protein_Len: 54 Strand: - Start: 99 End: 260 .................................................................................................. K Q P E F T R L F S S V H L N S C R F L C R N I I P S L F G Y H I Q V S N I N N G R S T K K K K K P S Q I M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 33 Strand: - Start: 68 End: 166 ................................................................... R R G Y V T P Y D R N K L S L P V F F V R F M C I L A A F C V D M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 33 Strand: - Start: 1 End: 99 N G N N G T T E E N L P N E G E N N E I I K D D D M F L Q I T E M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ attgccgttattgcccgttgtttcttcgttcagtgggttttcaccctcgttgttttcaattatcttatcgtcgtccataaacagttggatagtctctatttttgaggctcaaaggtacgaagaaaactcgaaacatgcaaattagagcagcgaaacaaacatctatttattataggtgaaaggaagccataatgaatctgaacggagttgatgttatttcccctgcttgttttcttctttttcttaggggattgtattatctttgtacgtagaaaatagaattatttaagctttgagaaaaatttatcagaactttgataataatttatctaagctttgataaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcaaacaccaaaatgcgagttctacagaaaaatataataattttgcacttgctgcttgactctacgaattaattataacgtcattctttcgcaaactttcacaacttttagttcccttattccgttaaaaagccgtaactttgtgccaaattccgaataaacaaagataaaagaaatatatt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ attgccgttattgcccgttgtttcttcgttcagtgggttttcaccctcgttgttttcaattatcttatcgtcgtccataaacagttggatagtctctatttttgaggctcaaaggtacgaagaaaactcgaaacatgcaaattagagcagcgaaacaaacatctatttattataggtgaaaggaagccataatgaatctgaacggagttgatgttatttcccctgcttgttttcttctttttcttaggggattgtattatctttgtacgtagaaaatagaattatttaagctttgagaaaaatttatcagaactttgataataatttatctaagctttgataaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcaaacaccaaaatgcgagttctacagaaaaatataataattttgcacttgctgcttgactctacgaattaattataacgtcattctttcgcaaactttcacaacttttagttcccttattccgttaaaaagccgtaactttgtgccaaattccgaataaacaaagataaaagaaatatatt Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 90 HP_score: -8.3 Tail_Score: -4.84017 Start: 303 End: 344 Full_Region: aagctttgataatga tttatcaaagcttagataa atta ttatcaaagttctgataaa tttttctcaaagctt ..............................................................................................................................................................................................................................................................................................................tttatcaaagcttagataaattattatcaaagttctgataaa........................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -13.6 Tail_Score: -3.4745 Start: 313 End: 356 Full_Region: gtagaattatctaag ctttgataatgatttatcaa agct tagataaattattatcaaag ttctgataaattttt ........................................................................................................................................................................................................................................................................................................................ctttgataatgatttatcaaagcttagataaattattatcaaag............................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -16.3 Tail_Score: -3.8062 Start: 325 End: 366 Full_Region: tacgtattctgtaga attatctaagctttgataa tgat ttatcaaagcttagataaa ttattatcaaagttc ....................................................................................................................................................................................................................................................................................................................................attatctaagctttgataatgatttatcaaagcttagataaa..................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -19.8 Tail_Score: -3.30243 Start: 326 End: 365 Full_Region: AACTTTGATAATAAT TTATCTAAGCTTTGATAA ATCA TTATCAAAGCTTAGATAA TTCTACAGAATACGT .....................................................................................................................................................................................................................................................................................................................................TTATCTAAGCTTTGATAAATCATTATCAAAGCTTAGATAA...................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -19.8 Tail_Score: -2.8789 Start: 326 End: 365 Full_Region: acgtattctgtagaa ttatctaagctttgataa tgat ttatcaaagcttagataa attattatcaaagtt .....................................................................................................................................................................................................................................................................................................................................ttatctaagctttgataatgatttatcaaagcttagataa...................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PI1736:PI1737|PI1736:PI1737:topoisomerase IV, subunit A:glycyl-tRNA synthetase:->->:1657151..1657905 755 attgccgttattgcccgttgtttcttcgttcagtgggttttcaccctcgttgttttcaattatcttatcgtcgtccataaacagttggatagtctctatttttgaggctcaaaggtacgaagaaaactcgaaacatgcaaattagagcagcgaaacaaacatctatttattataggtgaaaggaagccataatgaatctgaacggagttgatgttatttcccctgcttgttttcttctttttcttaggggattgtattatctttgtacgtagaaaatagaattatttaagctttgagaaaaatttatcagaactttgataataatttatctaagctttgataaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcaaacaccaaaatgcgagttctacagaaaaatataataattttgcacttgctgcttgactctacgaattaattataacgtcattctttcgcaaactttcacaacttttagttcccttattccgttaaaaagccgtaactttgtgccaaattccgaataaacaaagataaaagaaatatatt Intra-Species Hit: Count: 2 Min: 1 Max: 755 Len: 755 Subject: pint_PI1736_PI1737|topoisomerase IV, subunit A:glycyl-tRNA synthetase|POSITIVE:POSITIVE|[1657151,1657905]|755 HSP 1 e-value: 0.0 bit: 684.0 Len: 345 Query Start:1 Query End:345 Subject Strand: POSITIVE Subject Start: 1 Subject End: 345 attgccgttattgcccgttgtttcttcgttcagtgggttttcaccctcgttgttttcaattatcttatcgtcgtccataaacagttggatagtctctatttttgaggctcaaaggtacgaagaaaactcgaaacatgcaaattagagcagcgaaacaaacatctatttattataggtgaaaggaagccataatgaatctgaacggagttgatgttatttcccctgcttgttttcttctttttcttaggggattgtattatctttgtacgtagaaaatagaattatttaagctttgagaaaaatttatcagaactttgataataatttatctaagctttgataaat.......................................................................................................................................................................................................................................................................................................................................................................................................................... attgccgttattgcccgttgtttcttcgttcagtgggttttcaccctcgttgttttcaattatcttatcgtcgtccataaacagttggatagtctctatttttgaggctcaaaggtacgaagaaaactcgaaacatgcaaattagagcagcgaaacaaacatctatttattataggtgaaaggaagccataatgaatctgaacggagttgatgttatttcccctgcttgttttcttctttttcttaggggattgtattatctttgtacgtagaaaatagaattatttaagctttgagaaaaatttatcagaactttgataataatttatctaagctttgataaat.......................................................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-100 bit: 367.0 Len: 185 Query Start:571 Query End:755 Subject Strand: POSITIVE Subject Start: 571 Subject End: 755 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttttcaaacaccaaaatgcgagttctacagaaaaatataataattttgcacttgctgcttgactctacgaattaattataacgtcattctttcgcaaactttcacaacttttagttcccttattccgttaaaaagccgtaactttgtgccaaattccgaataaacaaagataaaagaaatatatt ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttttcaaacaccaaaatgcgagttctacagaaaaatataataattttgcacttgctgcttgactctacgaattaattataacgtcattctttcgcaaactttcacaacttttagttcccttattccgttaaaaagccgtaactttgtgccaaattccgaataaacaaagataaaagaaatatatt Subject: pint_PI1749_PI1750|conserved hypothetical protein:sulfate transporter|POSITIVE:POSITIVE|[1671698,1672273]|576 HSP 1 e-value: 2.0E-55 bit: 218.0 Len: 142 Query Start:202 Query End:343 Subject Strand: NEGATIVE Subject Start: 215 Subject End: 356 .........................................................................................................................................................................................................acggagttgatgttatttcccctgcttgttttcttctttttcttaggggattgtattatctttgtacgtagaaaatagaattatttaagctttgagaaaaatttatcagaactttgataataatttatctaagctttgataa............................................................................................................................................................................................................................................................................................................................................................................................................................ .........................................................................................................................................................................................................acggagctgatgttattttccctgcttgttttcttctttttcttaggggattgtattatctttgtacgtagaaaatagaattatcaaagctttgagaagtttttatcagaactgtgataataatttatctaagctttgataa............................................................................................................................................................................................................................................................................................................................................................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUUGCCGUUAUUGCCCGUUGUUUCUUCGUUCAGUGGGUUUUCACCCUCGUUGUUUUCAAUUAUCUUAUCGUCGUCCAUAAACAGUUGGAUAGUCUCUAUUUUUGAGGCUCAAAGGUACGAAGAAAACUCGAAACAUGCAAAUUAGAGCAGCGAAACAAACAUCUAUUUAUUAUAGGUGAAAGGAAGCCAUAAUGAAUCUGAACGGAGUUGAUGUUAUUUCCCCUGCUUGUUUUCUUCUUUUUCUUAGGGGAUUGUAUUAUCUUUGUACGUAGAAAAUAGAAUUAUUUAAGCUUUGAGAAAAAUUUAUCAGAACUUUGAUAAUAAUUUAUCUAAGCUUUGAUAAAUCAUUAUCAAAGCUUAGAUAAUUCUACAGAAUACGUAUAGAAUUAUGAUUUUGUAGGCAUCUAAAUAUGAUUUUAUACGUAUCUAAACAGAAAAGGAAUCAAGAAAGGGAACAUUGAAAAUACAAACAAGCUCAUCAGGCAAUACAUACCAAAGAAAGCAAACUUUGAUGAUUUCACAGACAAAAAGAUUGCGACCAUACAGAAGAAAAUAAACAGAAGACCUAAAUUUUCAAACACCAAAAUGCGAGUUCUACAGAAAAAUAUAAUAAUUUUGCACUUGCUGCUUGACUCUACGAAUUAAUUAUAACGUCAUUCUUUCGCAAACUUUCACAACUUUUAGUUCCCUUAUUCCGUUAAAAAGCCGUAACUUUGUGCCAAAUUCCGAAUAAACAAAGAUAAAAGAAAUAUAUU ...............(((((...((((((((((..(((((((....((((((((((....((((((......(((((........))))).(((((.......)))))...))))))(((.......))).............))))))))))......(((((((.....)))))))...))))))).........)))))))))).))))).....(((((((...................))))))).....((((((((((..((......((((((((((((((((((((.....((((((((((.(((.(((((....))))).))).)))))))))).....)))))))))))))))))))).(((.((((((((((((((((.((.((....))...)).)))))))))))))))))))..))......(((((.....((((((((..(((((..........(((.....))).........(((((........)))))....))))).......((((.((((((........(((((........(((((......)))))......(((...((((((....(((((...........))))).))))))...))).........................))))))))))).))))...........)))))))).....((...((((......))))..))...)))))......))))))))))............ (-177.51) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAUAUAUUUCUUUUAUCUUUGUUUAUUCGGAAUUUGGCACAAAGUUACGGCUUUUUAACGGAAUAAGGGAACUAAAAGUUGUGAAAGUUUGCGAAAGAAUGACGUUAUAAUUAAUUCGUAGAGUCAAGCAGCAAGUGCAAAAUUAUUAUAUUUUUCUGUAGAACUCGCAUUUUGGUGUUUGAAAAUUUAGGUCUUCUGUUUAUUUUCUUCUGUAUGGUCGCAAUCUUUUUGUCUGUGAAAUCAUCAAAGUUUGCUUUCUUUGGUAUGUAUUGCCUGAUGAGCUUGUUUGUAUUUUCAAUGUUCCCUUUCUUGAUUCCUUUUCUGUUUAGAUACGUAUAAAAUCAUAUUUAGAUGCCUACAAAAUCAUAAUUCUAUACGUAUUCUGUAGAAUUAUCUAAGCUUUGAUAAUGAUUUAUCAAAGCUUAGAUAAAUUAUUAUCAAAGUUCUGAUAAAUUUUUCUCAAAGCUUAAAUAAUUCUAUUUUCUACGUACAAAGAUAAUACAAUCCCCUAAGAAAAAGAAGAAAACAAGCAGGGGAAAUAACAUCAACUCCGUUCAGAUUCAUUAUGGCUUCCUUUCACCUAUAAUAAAUAGAUGUUUGUUUCGCUGCUCUAAUUUGCAUGUUUCGAGUUUUCUUCGUACCUUUGAGCCUCAAAAAUAGAGACUAUCCAACUGUUUAUGGACGACGAUAAGAUAAUUGAAAACAACGAGGGUGAAAACCCACUGAACGAAGAAACAACGGGCAAUAACGGCAAU ......((((..(((((((.(((...(((......(((.(((((.(((((........(((((((.(.(((.((..(((.((((((......(((((...((.((((((((.(((..(..((((((((((.(((((((.......(((((......))))).....))).)))).)))))))....(((..((((((((((.(((((((((........((((...(((((...(((....)))))))).)))).(((((.((..(((((((.((.((((..((((..((....((((.(........)))))..........(((((((((.(........).)))))))))))..))))..)))).......((((((....((((((((((.((((((((((.((.(((((((((.(((((.(((((....))))).))))).))))))))).)).)))))))))).))))))))))....))))))...)).)))))))....)).)))))..))))))))).))))))))))..)))......)))....)..))).)))))))).)))))))..((((.....)))).......)))))).))).)).))).).)))))))........))))).))))).))).((.((((((...........)))))).))..))).))))))))))..))))....((.((((....))))..((..((.........))..))....))..... (-177.89) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 387 365 326 185 146 pint:PI1716|5end_hypothetical_protein_1631588..1631818_POSITIVE 328 229 181 143 103 pint:PI0056|5end_conserved_hypothetical_protein;_possible_DNA_uptake_protein_54967..55197_POSITIVE 325 46 2 229 183 pint:PI0431|5end_Xaa-Pro_aminopeptidase_403064..403294_POSITIVE 319 76 32 217 181 pint:PI1621|5end_hypothetical_protein_1545424..1545654_POSITIVE 313 309 264 224 179 pint:PI1715|5end_conserved_hypothetical_protein;_possible_DNA-binding_protein,_histone-like_family_1631639..1631869_POSITIVE 310 720 690 131 101 pint:PI0632|5end_NusB_family_protein_(N_utilization_substance_protein_B)_578476..578706_POSITIVE 309 52 13 56 8 pint:PI1475|5end_possible_short_chain_dehydrogenase_1397142..1397372_POSITIVE 308 48 2 218 166 pint:PI0353|5end_hypothetical_protein_324610..324840_POSITIVE 305 58 15 151 112 pint:PI1637|5end_hypothetical_protein_1554500..1554730_POSITIVE 304 50 4 230 174 pint:PI0736|5end_transcriptional_regulator,_TetR_family_670580..670810_POSITIVE 302 48 2 231 188 pint:PI1671|5end_hypothetical_protein_1586397..1586627_POSITIVE 302 52 14 222 184 pint:PI1454|5end_chromosomal_replication_initiator_protein,_DnaA_1376658..1376888_POSITIVE 297 56 12 200 159 pint:PI0628|5end_phosphoribosylglycinamide_formyltransferase_576027..576257_POSITIVE 297 50 4 188 137 pint:PI0058|5end_conserved_hypothetical_protein_56398..56628_POSITIVE 296 150 103 182 132 pint:PI2112|5end_phosphopantetheine_adenylyltransferase_2063194..2063424_POSITIVE 292 52 11 113 72 pint:PI1706|5end_GTP-binding_protein_1622770..1623000_POSITIVE 290 48 3 102 49 pint:PI2100|5end_conserved_hypothetical_protein_2053351..2053581_POSITIVE 289 628 581 57 13 pint:PI0550|5end_possible_glycosyl_hydrolase_500650..500880_POSITIVE 287 476 431 131 76 pint:PI0805|5end_conserved_hypothetical_protein_742729..742959_POSITIVE 287 49 4 218 154 pint:PI0529|5end_hypothetical_protein_483026..483256_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 328 229 181 140 100 pint:PI0055|3end_hypothetical_protein_55044..55194_POSITIVE 300 740 700 69 31 pint:PI0429|3end_hypothetical_protein_399602..399752_POSITIVE 296 49 1 71 18 pint:PI0745|3end_conserved_hypothetical_protein_675670..675820_POSITIVE 287 476 431 112 57 pint:PI0804|3end_conserved_hypothetical_protein;_possible_membrane_protein_742790..742940_POSITIVE 284 74 35 143 100 pint:PI0944|3end_hypothetical_protein_875249..875399_POSITIVE 284 219 174 142 97 pint:PI0509|3end_conserved_hypothetical_protein_469187..469337_POSITIVE 282 47 1 148 97 pint:PI0837|3end_conserved_hypothetical_protein_772681..772831_POSITIVE 280 270 221 110 46 pint:PI1629|3end_hypothetical_protein_1551966..1552116_POSITIVE 278 50 3 119 62 pint:PI1623|3end_hypothetical_protein_1549261..1549411_POSITIVE 278 50 3 149 92 pint:PI0331|3end_hypothetical_protein_312575..312725_POSITIVE 278 50 3 119 62 pint:PI0330|3end_hypothetical_protein_312545..312695_POSITIVE 277 47 1 135 69 pint:PI0746|3end_hypothetical_protein_676419..676569_POSITIVE 275 35 2 75 33 pint:PI0683|3end_hypothetical_protein_619797..619947_POSITIVE 274 733 692 150 105 pint:PI0232|3end_conserved_hypothetical_protein_231894..232044_POSITIVE 273 570 521 123 71 pint:PI0044|3end_thiamine_biosynthetic_enzyme_43857..44007_POSITIVE 271 239 192 134 91 pint:PI0734|3end_ABC_transporter,_ATP-binding_/_permease_668760..668910_POSITIVE 271 49 3 134 82 pint:PI0421|3end_hypothetical_protein_387774..387924_POSITIVE 269 55 12 89 50 pint:PI1740|3end_DedA_family_protein_1662316..1662466_POSITIVE 269 41 3 89 47 pint:PI1670|3end_hypothetical_protein_1587026..1587176_POSITIVE 269 47 3 44 2 pint:PI0307|3end_RNA_polymerase_sigma-70_factor,_ECF_subfamily_290667..290817_POSITIVE