Origin IGS: tttgtatccttatattatttcaattagacaataacaaaaagcgaatatgctgcttttgtttattgccttaaatacaaagactgtgccattgcaaaagcgggcgtcttgtgtattctaacacaaagataagaaaaaaatggcaattactcaataaaaaactacttttttaattctaccgattgtagttttttcgctcttttggtagaaagagaactgtgcgagccgtatttcgggtagttaatagattggtaggggcgggcaaatggttttactttgtctgaataggtttatcctttcaggcatctttctgcttcgcttgtattctgtattttataaacggaaaaaagacaaaaatagtgtaaatattttttacaagcataactgttgtgtaaccgttttattatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaactaccgcttcaatataggggtgtgaatcatttcgtttcttatatccgcattgatttttctttggtgtcaggaacgtgataaatcacgcctctacctgccgatgtgcattctaaaaacgtgagttctattgttcaaaaggttgaacaccgctttataaaacataaaaaagcaatatcctttccaacagctttctcgattgaaagtttgtggaaaggatattgcttttattattctatacccattgtttgctgtgcaaggcacaagcattaatggtttgtaggcattggctta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taagccaatgcctacaaaccattaatgcttgtgccttgcacagcaaacaatgggtatagaataataaaagcaatatcctttccacaaactttcaatcgagaaagctgttggaaaggatattgcttttttatgttttataaagcggtgttcaaccttttgaacaatagaactcacgtttttagaatgcacatcggcaggtagaggcgtgatttatcacgttcctgacaccaaagaaaaatcaatgcggatataagaaacgaaatgattcacacccctatattgaagcggtagttttgtaaagataattcgttgagaaaacggtaatttcgatttgacgttgcaaaagcgtaggttttgcaaggcaaaagagccgcttttaccgtgcaaaagcggctcttttacaatgcgaaacaataggttttataacacactgataataaaacggttacacaacagttatgcttgtaaaaaatatttacactatttttgtcttttttccgtttataaaatacagaatacaagcgaagcagaaagatgcctgaaaggataaacctattcagacaaagtaaaaccatttgcccgcccctaccaatctattaactacccgaaatacggctcgcacagttctctttctaccaaaagagcgaaaaaactacaatcggtagaattaaaaaagtagttttttattgagtaattgccatttttttcttatctttgtgttagaatacacaagacgcccgcttttgcaatggcacagtctttgtatttaaggcaataaacaaaagcagcatattcgctttttgttattgtctaattgaaataatataaggatacaaa Mask Tandem Repeat Region ================================================ tttgtatccttatattatttcaattagacaataacaaaaagcgaatatgctgcttttgtttattgccttaaatacaaagactgtgccattgcaaaagcgggcgtcttgtgtattctaacacaaagataagaaaaaaatggcaattactcaataaaaaactacttttttaattctaccgattgtagttttttcgctcttttggtagaaagagaactgtgcgagccgtatttcgggtagttaatagattggtaggggcgggcaaatggttttactttgtctgaataggtttatcctttcaggcatctttctgcttcgcttgtattctgtattttataaacggaaaaaagacaaaaatagtgtaaatattttttacaagcataactgttgtgtaaccgttttattatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaactaccgcttcaatataggggtgtgaatcatttcgtttcttatatccgcattgatttttctttggtgtcaggaacgtgataaatcacgcctctacctgccgatgtgcattctaaaaacgtgagttctattgttcaaaaggttgaacaccgctttataaaacataaaaaagcaatatcctttccaacagctttctcgattgaaagtttgtggaaaggatattgcttttattattctatacccattgtttgctgtgcaaggcacaagcattaatggtttgtaggcattggctta Find is-nt database================================================ Query_seq: PI1728:PI1729|PI1728:PI1729:ATP-dependent Clp protease, proteolytic subunit:FKBP-type peptidyl-prolyl cis-trans isomerase, trigger factor:->->:1647719..1648555 837 tttgtatccttatattatttcaattagacaataacaaaaagcgaatatgctgcttttgtttattgccttaaatacaaagactgtgccattgcaaaagcgggcgtcttgtgtattctaacacaaagataagaaaaaaatggcaattactcaataaaaaactacttttttaattctaccgattgtagttttttcgctcttttggtagaaagagaactgtgcgagccgtatttcgggtagttaatagattggtaggggcgggcaaatggttttactttgtctgaataggtttatcctttcaggcatctttctgcttcgcttgtattctgtattttataaacggaaaaaagacaaaaatagtgtaaatattttttacaagcataactgttgtgtaaccgttttattatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaactaccgcttcaatataggggtgtgaatcatttcgtttcttatatccgcattgatttttctttggtgtcaggaacgtgataaatcacgcctctacctgccgatgtgcattctaaaaacgtgagttctattgttcaaaaggttgaacaccgctttataaaacataaaaaagcaatatcctttccaacagctttctcgattgaaagtttgtggaaaggatattgcttttattattctatacccattgtttgctgtgcaaggcacaagcattaatggtttgtaggcattggctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1728:PI1729|PI1728:PI1729:ATP-dependent Clp protease, proteolytic subunit:FKBP-type peptidyl-prolyl cis-trans isomerase, trigger factor:->->:1647719..1648555 837 tttgtatccttatattatttcaattagacaataacaaaaagcgaatatgctgcttttgtttattgccttaaatacaaagactgtgccattgcaaaagcgggcgtcttgtgtattctaacacaaagataagaaaaaaatggcaattactcaataaaaaactacttttttaattctaccgattgtagttttttcgctcttttggtagaaagagaactgtgcgagccgtatttcgggtagttaatagattggtaggggcgggcaaatggttttactttgtctgaataggtttatcctttcaggcatctttctgcttcgcttgtattctgtattttataaacggaaaaaagacaaaaatagtgtaaatattttttacaagcataactgttgtgtaaccgttttattatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaactaccgcttcaatataggggtgtgaatcatttcgtttcttatatccgcattgatttttctttggtgtcaggaacgtgataaatcacgcctctacctgccgatgtgcattctaaaaacgtgagttctattgttcaaaaggttgaacaccgctttataaaacataaaaaagcaatatcctttccaacagctttctcgattgaaagtttgtggaaaggatattgcttttattattctatacccattgtttgctgtgcaaggcacaagcattaatggtttgtaggcattggctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1728:PI1729|PI1728:PI1729:ATP-dependent Clp protease, proteolytic subunit:FKBP-type peptidyl-prolyl cis-trans isomerase, trigger factor:->->:1647719..1648555 837 tttgtatccttatattatttcaattagacaataacaaaaagcgaatatgctgcttttgtttattgccttaaatacaaagactgtgccattgcaaaagcgggcgtcttgtgtattctaacacaaagataagaaaaaaatggcaattactcaataaaaaactacttttttaattctaccgattgtagttttttcgctcttttggtagaaagagaactgtgcgagccgtatttcgggtagttaatagattggtaggggcgggcaaatggttttactttgtctgaataggtttatcctttcaggcatctttctgcttcgcttgtattctgtattttataaacggaaaaaagacaaaaatagtgtaaatattttttacaagcataactgttgtgtaaccgttttattatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaactaccgcttcaatataggggtgtgaatcatttcgtttcttatatccgcattgatttttctttggtgtcaggaacgtgataaatcacgcctctacctgccgatgtgcattctaaaaacgtgagttctattgttcaaaaggttgaacaccgctttataaaacataaaaaagcaatatcctttccaacagctttctcgattgaaagtttgtggaaaggatattgcttttattattctatacccattgtttgctgtgcaaggcacaagcattaatggtttgtaggcattggctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tttgtatccttatattatttcaattagacaataacaaaaagcgaatatgctgcttttgtttattgccttaaatacaaagactgtgccattgcaaaagcgggcgtcttgtgtattctaacacaaagataagaaaaaaatggcaattactcaataaaaaactacttttttaattctaccgattgtagttttttcgctcttttggtagaaagagaactgtgcgagccgtatttcgggtagttaatagattggtaggggcgggcaaatggttttactttgtctgaataggtttatcctttcaggcatctttctgcttcgcttgtattctgtattttataaacggaaaaaagacaaaaatagtgtaaatattttttacaagcataactgttgtgtaaccgttttattatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaactaccgcttcaatataggggtgtgaatcatttcgtttcttatatccgcattgatttttctttggtgtcaggaacgtgataaatcacgcctctacctgccgatgtgcattctaaaaacgtgagttctattgttcaaaaggttgaacaccgctttataaaacataaaaaagcaatatcctttccaacagctttctcgattgaaagtttgtggaaaggatattgcttttattattctatacccattgtttgctgtgcaaggcacaagcattaatggtttgtaggcattggctta Predict ORF larger than 30AA ================================================ Protein_Len: 32 Strand: + Start: 31 End: 126 .............................. M T K S E Y A A F V Y C L K Y K D C A I A K A G V L C I L T Q R ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: + Start: 72 End: 167 ....................................................................... M Q R L C H C K S G R L V Y S N T K I R K K W Q L L N K K L L F .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 245 End: 436 .................................................................................................................................................................................................................................................... M G R G G Q M V L L C L N R F I L S G I F L L R L Y S V F Y K R K K D K N S V N I F Y K H N C C V T V L L S V C Y K T Y ................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 32 Strand: + Start: 473 End: 568 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M P C K T Y A F A T S N R N Y R F L N E L S L Q N Y R F N I G V ............................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 424 End: 621 ....................................................................................................................................................................................................................................................................................................................................................................................................................................... M F R I V K E P L L H G K S G S F A L Q N L R F C N V K S K L P F S Q R I I F T K L P L Q Y R G V N H F V S Y I R I D F ........................................................................................................................................................................................................................ Protein_Len: 31 Strand: + Start: 572 End: 664 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M I S F L I S A L I F L W C Q E R D K S R L Y L P M C I L K T ............................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 628 End: 813 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M T P L P A D V H S K N V S S I V Q K V E H R F I K H K K A I S F P T A F S I E S L W K G Y C F Y Y S I P I V C C A R H ........................ Protein_Len: 39 Strand: + Start: 707 End: 823 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M K K Q Y P F Q Q L S R L K V C G K D I A F I I L Y P L F A V Q G T S I N G L .............. Protein_Len: 58 Strand: - Start: 640 End: 813 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... R G I H M R F V H T R N N L L N F V A K Y F M F F C Y G K W C S E R N F T Q P F S I A K I I R Y G N N A T C P V L M ........................ Protein_Len: 60 Strand: - Start: 291 End: 506 .................................................................................................................................................................................................................................................................................................. I K Y V S F L C F Y H L Y K K C A Y S N H L R K I I L T N Y F R N N R M T F S G S K C P L L P E K A K C F R R K Q L T M ........................................................................................................................................................................................................................................................................................................................................... tttgtatccttatattatttcaattagacaataacaaaaagcgaatatgctgcttttgtttattgccttaaatacaaagactgtgccattgcaaaagcgggcgtcttgtgtattctaacacaaagataagaaaaaaatggcaattactcaataaaaaactacttttttaattctaccgattgtagttttttcgctcttttggtagaaagagaactgtgcgagccgtatttcgggtagttaatagattggtaggggcgggcaaatggttttactttgtctgaataggtttatcctttcaggcatctttctgcttcgcttgtattctgtattttataaacggaaaaaagacaaaaatagtgtaaatattttttacaagcataactgttgtgtaaccgttttattatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaactaccgcttcaatataggggtgtgaatcatttcgtttcttatatccgcattgatttttctttggtgtcaggaacgtgataaatcacgcctctacctgccgatgtgcattctaaaaacgtgagttctattgttcaaaaggttgaacaccgctttataaaacataaaaaagcaatatcctttccaacagctttctcgattgaaagtttgtggaaaggatattgcttttattattctatacccattgtttgctgtgcaaggcacaagcattaatggtttgtaggcattggctta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 83 Start: 653 End: 682 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAACAATAGAACTCACGTTTTTAGAAT........................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 123 End: 152 ..........................................................................................................................ATTGAGTAATTGCCATTTTTTTCTTATCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ PromScan Matrix: RpoN Strand: - Score: 84 Start: 714 End: 730 .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAAAGGATATTGCT........................................................................................................... PromScan Matrix: RpoN Strand: + Score: 84 Start: 753 End: 769 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGGATATTGCT.................................................................... PromScan Matrix: RpoN Strand: - Score: 83 Start: 73 End: 89 ........................................................................ATGGCACAGTCTTTGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ tttgtatccttatattatttcaattagacaataacaaaaagcgaatatgctgcttttgtttattgccttaaatacaaagactgtgccattgcaaaagcgggcgtcttgtgtattctaacacaaagataagaaaaaaatggcaattactcaataaaaaactacttttttaattctaccgattgtagttttttcgctcttttggtagaaagagaactgtgcgagccgtatttcgggtagttaatagattggtaggggcgggcaaatggttttactttgtctgaataggtttatcctttcaggcatctttctgcttcgcttgtattctgtattttataaacggaaaaaagacaaaaatagtgtaaatattttttacaagcataactgttgtgtaaccgttttattatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaactaccgcttcaatataggggtgtgaatcatttcgtttcttatatccgcattgatttttctttggtgtcaggaacgtgataaatcacgcctctacctgccgatgtgcattctaaaaacgtgagttctattgttcaaaaggttgaacaccgctttataaaacataaaaaagcaatatcctttccaacagctttctcgattgaaagtttgtggaaaggatattgcttttattattctatacccattgtttgctgtgcaaggcacaagcattaatggtttgtaggcattggctta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 73 HP_score: -3.4 Tail_Score: -5.19916 Start: 173 End: 185 Full_Region: ACTACTTTTTTAATT CTAC CGATT GTAG TTTTTTCGCTCTTTT ............................................................................................................................................................................CTACCGATTGTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 58 HP_score: -5.7 Tail_Score: -3.62572 Start: 275 End: 302 Full_Region: CAAATGGTTTTACTT TGTCTGAATAGG TTTAT CCTTTCAGGCA TCTTTCTGCTTCGCT ..................................................................................................................................................................................................................................................................................TGTCTGAATAGGTTTATCCTTTCAGGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 48 HP_score: -3.8 Tail_Score: -3.13008 Start: 358 End: 374 Full_Region: cacaacagttatgct tgtaaa aaata tttaca ctatttttgtctttt .....................................................................................................................................................................................................................................................................................................................................................................tgtaaaaaatatttaca............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -18.3 Tail_Score: -4.27316 Start: 442 End: 470 Full_Region: TTTCGCATTGTAAAA GAGCCGCTTTTGC ACG GTAAAAGCGGCTC TTTTGCCTTGCAAAA .........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCGCTTTTGCACGGTAAAAGCGGCTC............................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 63 HP_score: -4.7 Tail_Score: -4.09685 Start: 442 End: 492 Full_Region: TTTCGCATTGTAAAA GAGCCGCTTTTGCACGGTAAAAG CGGCT CTTTTGCCTTGCAAAACCTACGC TTTTGCAACGTCAAA .........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCGCTTTTGCACGGTAAAAGCGGCTCTTTTGCCTTGCAAAACCTACGC......................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -16.1 Tail_Score: -4.13767 Start: 442 End: 470 Full_Region: ttttgcaaggcaaaa gagccgcttttac cgt gcaaaagcggctc ttttacaatgcgaaa .........................................................................................................................................................................................................................................................................................................................................................................................................................................................gagccgcttttaccgtgcaaaagcggctc............................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -17.8 Tail_Score: -4.97957 Start: 715 End: 768 Full_Region: ATAAAACATAAAAAA GCAATATCCTTTCCAACAGCTTTC TCGATT GAAAGTTTGTGGAAAGGATATTGC TTTTATTATTCTATA ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATCCTTTCCAACAGCTTTCTCGATTGAAAGTTTGTGGAAAGGATATTGC..................................................................... TransTerm Strand: - Conf: 100 HP_score: -15.6 Tail_Score: -5.65678 Start: 715 End: 768 Full_Region: tatagaataataaaa gcaatatcctttccacaaactttc aatcga gaaagctgttggaaaggatattgc ttttttatgttttat ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcaatatcctttccacaaactttcaatcgagaaagctgttggaaaggatattgc..................................................................... Find igs database================================================ Query_seq: PI1728:PI1729|PI1728:PI1729:ATP-dependent Clp protease, proteolytic subunit:FKBP-type peptidyl-prolyl cis-trans isomerase, trigger factor:->->:1647719..1648555 837 tttgtatccttatattatttcaattagacaataacaaaaagcgaatatgctgcttttgtttattgccttaaatacaaagactgtgccattgcaaaagcgggcgtcttgtgtattctaacacaaagataagaaaaaaatggcaattactcaataaaaaactacttttttaattctaccgattgtagttttttcgctcttttggtagaaagagaactgtgcgagccgtatttcgggtagttaatagattggtaggggcgggcaaatggttttactttgtctgaataggtttatcctttcaggcatctttctgcttcgcttgtattctgtattttataaacggaaaaaagacaaaaatagtgtaaatattttttacaagcataactgttgtgtaaccgttttattatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaactaccgcttcaatataggggtgtgaatcatttcgtttcttatatccgcattgatttttctttggtgtcaggaacgtgataaatcacgcctctacctgccgatgtgcattctaaaaacgtgagttctattgttcaaaaggttgaacaccgctttataaaacataaaaaagcaatatcctttccaacagctttctcgattgaaagtttgtggaaaggatattgcttttattattctatacccattgtttgctgtgcaaggcacaagcattaatggtttgtaggcattggctta Intra-Species Hit: Count: 33 Min: 1 Max: 837 Len: 837 Subject: pint_PI1728_PI1729|ATP-dependent Clp protease, proteolytic subunit:FKBP-type peptidyl-prolyl cis-trans isomerase, trigger factor|POSITIVE:POSITIVE|[1647719,1648555]|837 HSP 1 e-value: 0.0 bit: 1618.0 Len: 837 Query Start:1 Query End:837 Subject Strand: POSITIVE Subject Start: 1 Subject End: 837 tttgtatccttatattatttcaattagacaataacaaaaagcgaatatgctgcttttgtttattgccttaaatacaaagactgtgccattgcaaaagcgggcgtcttgtgtattctaacacaaagataagnnnnnnntggcaattactcaataaaaaactacttttttaattctaccgattgtagttttttcgctcttttggtagaaagagaactgtgcgagccgtatttcgggtagttaatagattggtaggggcgggcaaatggttttactttgtctgaataggtttatcctttcaggcatctttctgcttcgcttgtattctgtattttataaacggaaaaaagacaaaaatagtgtaaatattttttacaagcataactgttgtgtaaccgttttattatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaactaccgcttcaatataggggtgtgaatcatttcgtttcttatatccgcattgatttttctttggtgtcaggaacgtgataaatcacgcctctacctgccgatgtgcattctaaaaacgtgagttctattgttcaaaaggttgaacaccgctttataaaacataaaaaagcaatatcctttccaacagctttctcgattgaaagtttgtggaaaggatattgcttttattattctatacccattgtttgctgtgcaaggcacaagcattaatggtttgtaggcattggctta tttgtatccttatattatttcaattagacaataacaaaaagcgaatatgctgcttttgtttattgccttaaatacaaagactgtgccattgcaaaagcgggcgtcttgtgtattctaacacaaagataagaaaaaaatggcaattactcaataaaaaactacttttttaattctaccgattgtagttttttcgctcttttggtagaaagagaactgtgcgagccgtatttcgggtagttaatagattggtaggggcgggcaaatggttttactttgtctgaataggtttatcctttcaggcatctttctgcttcgcttgtattctgtattttataaacggaaaaaagacaaaaatagtgtaaatattttttacaagcataactgttgtgtaaccgttttattatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaactaccgcttcaatataggggtgtgaatcatttcgtttcttatatccgcattgatttttctttggtgtcaggaacgtgataaatcacgcctctacctgccgatgtgcattctaaaaacgtgagttctattgttcaaaaggttgaacaccgctttataaaacataaaaaagcaatatcctttccaacagctttctcgattgaaagtttgtggaaaggatattgcttttattattctatacccattgtttgctgtgcaaggcacaagcattaatggtttgtaggcattggctta Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 2.0E-43 bit: 178.0 Len: 190 Query Start:358 Query End:547 Subject Strand: POSITIVE Subject Start: 175 Subject End: 363 .....................................................................................................................................................................................................................................................................................................................................................................tgtaaatattttttacaagcataactgttgtgtaaccgttttattatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaac.................................................................................................................................................................................................................................................................................................. .....................................................................................................................................................................................................................................................................................................................................................................tgtaaatatttttcacaagcacaactattgtgtaacctattgcttgtcagtgtattataaaacctattgttttgcattccaaaagtgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaatgccaaatcgaaattatcgtttt-tcaatgaattatctttacaaaac.................................................................................................................................................................................................................................................................................................. Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 3.0E-39 bit: 165.0 Len: 143 Query Start:404 Query End:546 Subject Strand: POSITIVE Subject Start: 162 Subject End: 304 ...................................................................................................................................................................................................................................................................................................................................................................................................................tcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaa................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................................tcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaa................................................................................................................................................................................................................................................................................................... Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 3.0E-36 bit: 155.0 Len: 150 Query Start:416 Query End:565 Subject Strand: NEGATIVE Subject Start: 125 Subject End: 274 ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaactaccgcttcaatataggg................................................................................................................................................................................................................................................................................ ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgtcaaatcgaaattatcattttttcaacgaattatctttacaaaactattgctttaatataggg................................................................................................................................................................................................................................................................................ Subject: pint_PI1441_PI1442|hypothetical protein:radical-activating enzyme (pyruvate-formate lyase-activating enzyme)|POSITIVE:POSITIVE|[1363734,1364088]|355 HSP 1 e-value: 2.0E-28 bit: 129.0 Len: 109 Query Start:416 Query End:524 Subject Strand: POSITIVE Subject Start: 86 Subject End: 194 ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttc......................................................................................................................................................................................................................................................................................................................... ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgctttcgcaacgtcaaatcgaaaataccgttttc......................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0854_PI0855|MiaB-like tRNA modifying enzyme:hypothetical protein|POSITIVE:POSITIVE|[788060,789233]|1174 HSP 1 e-value: 4.0E-26 bit: 121.0 Len: 105 Query Start:412 Query End:516 Subject Strand: NEGATIVE Subject Start: 771 Subject End: 875 ...........................................................................................................................................................................................................................................................................................................................................................................................................................ttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaatta................................................................................................................................................................................................................................................................................................................................. ...........................................................................................................................................................................................................................................................................................................................................................................................................................ttataaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgttgcaaaacctacgctttcgcaacgccaaatcgaaatta................................................................................................................................................................................................................................................................................................................................. Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 7.0E-25 bit: 117.0 Len: 135 Query Start:412 Query End:546 Subject Strand: NEGATIVE Subject Start: 155 Subject End: 289 ...........................................................................................................................................................................................................................................................................................................................................................................................................................ttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaa................................................................................................................................................................................................................................................................................................... ...........................................................................................................................................................................................................................................................................................................................................................................................................................ttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagcagctttcgcaacgtcaaatcgaaattatcgttttcttaacgaattatctttacaaaa................................................................................................................................................................................................................................................................................................... Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 3.0E-24 bit: 115.0 Len: 150 Query Start:358 Query End:507 Subject Strand: POSITIVE Subject Start: 121 Subject End: 270 .....................................................................................................................................................................................................................................................................................................................................................................tgtaaatattttttacaagcataactgttgtgtaaccgttttattatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaa.......................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................tgtaaatatttttcataagcatagttgttgtttaaccacttcataatcaaggcattgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaa.......................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 2.0E-22 bit: 109.0 Len: 151 Query Start:357 Query End:507 Subject Strand: POSITIVE Subject Start: 120 Subject End: 270 ....................................................................................................................................................................................................................................................................................................................................................................gtgtaaatattttttacaagcataactgttgtgtaaccgttttattatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaa.......................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................gtgtaaatatttttcacaacaatatcttttgcgtaactgctttattatcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaa.......................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 6.0E-22 bit: 107.0 Len: 186 Query Start:358 Query End:543 Subject Strand: NEGATIVE Subject Start: 72 Subject End: 257 .....................................................................................................................................................................................................................................................................................................................................................................tgtaaatattttttacaagcataactgttgtgtaaccgttttattatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttaca...................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................tgtaaatatttttcgcaaacatagctattgcgtaactgctttatcatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaacgtcaaatcgaaattatagttttcttaatgaattatctttaca...................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-6 bit: 56.0 Len: 36 Query Start:461 Query End:496 Subject Strand: POSITIVE Subject Start: 120 Subject End: 155 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaagcggctcttttgccttgcaaaacctacgctttt..................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaagcggctcttttgcgctgcaaaacctacgctttt..................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 2.0E-21 bit: 105.0 Len: 145 Query Start:403 Query End:547 Subject Strand: POSITIVE Subject Start: 319 Subject End: 463 ..................................................................................................................................................................................................................................................................................................................................................................................................................atcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaac.................................................................................................................................................................................................................................................................................................. ..................................................................................................................................................................................................................................................................................................................................................................................................................atcagtgcgttacaaaacctattgttttgcatcctaaaagcggctgttttgcacggtaaaagcataggttttgcgttgcaaaagagctgctttcgcaacgtcaaatcgaaattatcgttttcttaacgaattatctttacaaaac.................................................................................................................................................................................................................................................................................................. Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 4.0E-20 bit: 101.0 Len: 195 Query Start:353 Query End:547 Subject Strand: POSITIVE Subject Start: 128 Subject End: 322 ................................................................................................................................................................................................................................................................................................................................................................aatagtgtaaatattttttacaagcataactgttgtgtaaccgttttattatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaac.................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................................................................................................................................................................................................................aatagtgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaac.................................................................................................................................................................................................................................................................................................. Subject: pint_PI2056_PI2057|conserved hypothetical protein:conserved hypothetical protein; possible metal-dependent membrane protease|POSITIVE:POSITIVE|[2014489,2015078]|590 HSP 1 e-value: 2.0E-19 bit: 99.6 Len: 142 Query Start:405 Query End:546 Subject Strand: NEGATIVE Subject Start: 341 Subject End: 482 ....................................................................................................................................................................................................................................................................................................................................................................................................................cagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaa................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................cagtgtattacaaaacctattgtttcgcattccaaaagcggctgttttgcatggtaaaagcgtaagttttgcattacaaaagagccgctttcgcaacgtcaaatcgaaattattgttttcttaacgaattatctttacaaaa................................................................................................................................................................................................................................................................................................... Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 6.0E-19 bit: 97.6 Len: 132 Query Start:416 Query End:547 Subject Strand: POSITIVE Subject Start: 57 Subject End: 188 ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaac-gaattatctttacaaaac.................................................................................................................................................................................................................................................................................................. ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttt-tcgtcggaattatctttacaaaac.................................................................................................................................................................................................................................................................................................. Subject: pint_PI1803_PI1804|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1737852,1738248]|397 HSP 1 e-value: 1.0E-16 bit: 89.7 Len: 133 Query Start:415 Query End:547 Subject Strand: NEGATIVE Subject Start: 265 Subject End: 397 ..............................................................................................................................................................................................................................................................................................................................................................................................................................taaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaac.................................................................................................................................................................................................................................................................................................. ..............................................................................................................................................................................................................................................................................................................................................................................................................................taaaacctattgttttgcattgtaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaatgccaaatcgaaattaccgttttctttcggaataatctttacaaaac.................................................................................................................................................................................................................................................................................................. Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 1.0E-16 bit: 89.7 Len: 189 Query Start:358 Query End:546 Subject Strand: POSITIVE Subject Start: 30 Subject End: 218 .....................................................................................................................................................................................................................................................................................................................................................................tgtaaatattttttacaagcataactgttgtgtaaccgttttattatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaa................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................tgtaaatatttttcacaagagtatctcttgtgtaatcgtcttgttatcaacgtgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaatcgaaattaccattttctaaagaaataatctttacaaaa................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-6 bit: 56.0 Len: 36 Query Start:461 Query End:496 Subject Strand: NEGATIVE Subject Start: 132 Subject End: 167 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaagcggctcttttgccttgcaaaacctacgctttt..................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt..................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 6.0E-16 bit: 87.7 Len: 132 Query Start:416 Query End:547 Subject Strand: NEGATIVE Subject Start: 140 Subject End: 271 ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaac.................................................................................................................................................................................................................................................................................................. ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattgtaaaagcgtaggttttacacggtcaaagcggctgttttgcgatgcaaaacagccgctttcgcaatgccaaatcgaaattatcattttccttacgaattatccttacaaaac.................................................................................................................................................................................................................................................................................................. Subject: pint_PI0195_PI0196|epimerase/reductase:hypothetical protein|POSITIVE:POSITIVE|[188263,188574]|312 HSP 1 e-value: 6.0E-16 bit: 87.7 Len: 128 Query Start:416 Query End:543 Subject Strand: NEGATIVE Subject Start: 148 Subject End: 275 ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttaca...................................................................................................................................................................................................................................................................................................... ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgatgcaaaacagccgctttcgcaatgccaaatcgaaattgtcattttctctacgaattatttttaca...................................................................................................................................................................................................................................................................................................... Subject: pint_PI1958_PI1959|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1917430,1917847]|418 HSP 1 e-value: 2.0E-15 bit: 85.7 Len: 135 Query Start:412 Query End:546 Subject Strand: NEGATIVE Subject Start: 182 Subject End: 316 ...........................................................................................................................................................................................................................................................................................................................................................................................................................ttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaa................................................................................................................................................................................................................................................................................................... ...........................................................................................................................................................................................................................................................................................................................................................................................................................ttataaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctgttttgcaatgcaaaacagccgcttttgcaatgtcaaaccgaaattgctgttttttatcagaattatctttacaaaa................................................................................................................................................................................................................................................................................................... Subject: pint_PI0694_PI0695|Na+/dicarboxylate or sulfate symporter:xanthine/uracil permease family protein|POSITIVE:POSITIVE|[631238,631552]|315 HSP 1 e-value: 1.0E-13 bit: 79.8 Len: 132 Query Start:416 Query End:547 Subject Strand: NEGATIVE Subject Start: 87 Subject End: 218 ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaac.................................................................................................................................................................................................................................................................................................. ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcagtgtcaaatcgaaattaccgttttccgtcggaattatctttacaaaac.................................................................................................................................................................................................................................................................................................. Subject: pint_PI1981_PI1982|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1938199,1938578]|380 HSP 1 e-value: 2.0E-12 bit: 75.8 Len: 138 Query Start:412 Query End:549 Subject Strand: NEGATIVE Subject Start: 141 Subject End: 278 ...........................................................................................................................................................................................................................................................................................................................................................................................................................ttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaacta................................................................................................................................................................................................................................................................................................ ...........................................................................................................................................................................................................................................................................................................................................................................................................................ttataaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctgttttgaaatgcaaaacagccgctttcgcaatgtcaaaccgaaattgctgttttttatcagaattatctttacaaaacta................................................................................................................................................................................................................................................................................................ Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 2.0E-12 bit: 75.8 Len: 110 Query Start:357 Query End:466 Subject Strand: NEGATIVE Subject Start: 139 Subject End: 248 ....................................................................................................................................................................................................................................................................................................................................................................gtgtaaatattttttacaagcataactgttgtgtaaccgttttattatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcg................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................gtgtaaatatttttcataagagtatctattgtttaactctttaattatcaatgtgttacaaaacctattgttttgcattctaaaagcggctgttttgcacggtaaaagcg................................................................................................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 2.0E-6 bit: 56.0 Len: 36 Query Start:461 Query End:496 Subject Strand: POSITIVE Subject Start: 110 Subject End: 145 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaagcggctcttttgccttgcaaaacctacgctttt..................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt..................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 2.0E-12 bit: 75.8 Len: 133 Query Start:415 Query End:547 Subject Strand: NEGATIVE Subject Start: 214 Subject End: 346 ..............................................................................................................................................................................................................................................................................................................................................................................................................................taaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacg-aattatctttacaaaac.................................................................................................................................................................................................................................................................................................. ..............................................................................................................................................................................................................................................................................................................................................................................................................................taaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgccaaatcgaaattatcgtttt-tcagcgaaattatctttacaaaac.................................................................................................................................................................................................................................................................................................. Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 3.0E-11 bit: 71.9 Len: 132 Query Start:416 Query End:547 Subject Strand: POSITIVE Subject Start: 107 Subject End: 238 ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaac.................................................................................................................................................................................................................................................................................................. ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttacacggcaaaagcggctgttttgcgttgcaaaacagccgctttcgcaatgccaaatcgaaattatcatttttcttacgaataatctttacaaaac.................................................................................................................................................................................................................................................................................................. Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 3.0E-11 bit: 71.9 Len: 131 Query Start:416 Query End:546 Subject Strand: NEGATIVE Subject Start: 79 Subject End: 209 ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacg-aattatctttacaaaa................................................................................................................................................................................................................................................................................................... ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcatcgcaaaacagccgctttcgcaatgccaaagcgcaattaccacttt-tcaacgaaattatctttacaaaa................................................................................................................................................................................................................................................................................................... Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 1.0E-10 bit: 69.9 Len: 107 Query Start:401 Query End:507 Subject Strand: POSITIVE Subject Start: 96 Subject End: 202 ................................................................................................................................................................................................................................................................................................................................................................................................................ttatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaa.......................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................ttatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaa.......................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1937_PI1938|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1891147,1891993]|847 HSP 1 e-value: 5.0E-10 bit: 67.9 Len: 150 Query Start:358 Query End:507 Subject Strand: NEGATIVE Subject Start: 541 Subject End: 690 .....................................................................................................................................................................................................................................................................................................................................................................tgtaaatattttttacaagcataactgttgtgtaaccgttttattatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaa.......................................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................tgtaaatatttttcgcaagcctttctgttgtttaaccctttcattaccaatggtttacaaagcctattgttttacgttctaaaagcgtaggttttgcaaggtaaaagcggctcttttggcgtgcaaaagttacgctttcgcaacgccaaa.......................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 5.0E-10 bit: 67.9 Len: 133 Query Start:416 Query End:548 Subject Strand: NEGATIVE Subject Start: 111 Subject End: 243 ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacg-aattatctttacaaaact................................................................................................................................................................................................................................................................................................. ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaatcgaaattaccatttt-tcaaagaaattatctttacaaaact................................................................................................................................................................................................................................................................................................. HSP 2 e-value: 2.0E-6 bit: 56.0 Len: 36 Query Start:461 Query End:496 Subject Strand: POSITIVE Subject Start: 164 Subject End: 199 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaagcggctcttttgccttgcaaaacctacgctttt..................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt..................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 5.0E-10 bit: 67.9 Len: 106 Query Start:402 Query End:507 Subject Strand: NEGATIVE Subject Start: 265 Subject End: 370 .................................................................................................................................................................................................................................................................................................................................................................................................................tatcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaa.......................................................................................................................................................................................................................................................................................................................................... .................................................................................................................................................................................................................................................................................................................................................................................................................tatcagtgtgttataaaatatgttgttttgcgttccaaaagcggctgttttgcaaggtaaaagagccgcttttggcgtgcaaaacctacgctttcgcaacgtcaaa.......................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 2.0E-9 bit: 65.9 Len: 132 Query Start:416 Query End:547 Subject Strand: POSITIVE Subject Start: 41 Subject End: 172 ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaac-gaattatctttacaaaac.................................................................................................................................................................................................................................................................................................. ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgtaaaagagccgctttcgcaacgtcaaaacgaaattattgtttt-tcatcagaattatctttacaaaac.................................................................................................................................................................................................................................................................................................. Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 2.0E-9 bit: 65.9 Len: 101 Query Start:416 Query End:516 Subject Strand: NEGATIVE Subject Start: 40 Subject End: 140 ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaatta................................................................................................................................................................................................................................................................................................................................. ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccactttcgcaacgtcaaatcgaaatta................................................................................................................................................................................................................................................................................................................................. Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 2.0E-6 bit: 56.0 Len: 108 Query Start:409 Query End:516 Subject Strand: POSITIVE Subject Start: 404 Subject End: 511 ........................................................................................................................................................................................................................................................................................................................................................................................................................gtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaatta................................................................................................................................................................................................................................................................................................................................. ........................................................................................................................................................................................................................................................................................................................................................................................................................gtgttacaaaacctattgttttgcattccaaaagcggctgttttgcacggcaaaagcgtaggttttacctcgcaaaacagccgctttcgcaacgtcaaaacgaaatta................................................................................................................................................................................................................................................................................................................................. Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 8.0E-6 bit: 54.0 Len: 130 Query Start:416 Query End:545 Subject Strand: POSITIVE Subject Start: 387 Subject End: 516 ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaac-gaattatctttacaaa.................................................................................................................................................................................................................................................................................................... ...............................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaacagccgctttcgcaatgccaaatcgaaattatcatttt-tcatcagaattatctttacaaa.................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUGUAUCCUUAUAUUAUUUCAAUUAGACAAUAACAAAAAGCGAAUAUGCUGCUUUUGUUUAUUGCCUUAAAUACAAAGACUGUGCCAUUGCAAAAGCGGGCGUCUUGUGUAUUCUAACACAAAGAUAAGAAAAAAAUGGCAAUUACUCAAUAAAAAACUACUUUUUUAAUUCUACCGAUUGUAGUUUUUUCGCUCUUUUGGUAGAAAGAGAACUGUGCGAGCCGUAUUUCGGGUAGUUAAUAGAUUGGUAGGGGCGGGCAAAUGGUUUUACUUUGUCUGAAUAGGUUUAUCCUUUCAGGCAUCUUUCUGCUUCGCUUGUAUUCUGUAUUUUAUAAACGGAAAAAAGACAAAAAUAGUGUAAAUAUUUUUUACAAGCAUAACUGUUGUGUAACCGUUUUAUUAUCAGUGUGUUAUAAAACCUAUUGUUUCGCAUUGUAAAAGAGCCGCUUUUGCACGGUAAAAGCGGCUCUUUUGCCUUGCAAAACCUACGCUUUUGCAACGUCAAAUCGAAAUUACCGUUUUCUCAACGAAUUAUCUUUACAAAACUACCGCUUCAAUAUAGGGGUGUGAAUCAUUUCGUUUCUUAUAUCCGCAUUGAUUUUUCUUUGGUGUCAGGAACGUGAUAAAUCACGCCUCUACCUGCCGAUGUGCAUUCUAAAAACGUGAGUUCUAUUGUUCAAAAGGUUGAACACCGCUUUAUAAAACAUAAAAAAGCAAUAUCCUUUCCAACAGCUUUCUCGAUUGAAAGUUUGUGGAAAGGAUAUUGCUUUUAUUAUUCUAUACCCAUUGUUUGCUGUGCAAGGCACAAGCAUUAAUGGUUUGUAGGCAUUGGCUUA ((((((..........(((((....((.((((((..(((((((.......)))))))..)))))).))..........(((.((.....(((((((((((((.((((((((......)))).)))).............(((....(((..(((((((....))))))).(((((((((..(.(((......))))..))))))))).))).....)))..))).......((((...(((((.((((((((.(((((((((((((((......((((((((.(((.....)))))))))))............(((((((((((((.........)))))).......(((((((.......))))))))))))))..))))))).)))..)))))...)))))))).)))))....))))...((((.(((..(((((((((((((((((((...)))))))))))))))))))..))).))))...))))))))))))))).....)))))...((((.....)))).........))))))...............(((((((((((.(.(((.(((((((.(((.(((....((....))..)))))).))))))).))).).)))))))))))...((((((((((........(((....)))....(((((((....)))))))..))..............(((((((((((((((((((..(((((((......)))))))..)))))))))))))))))))......(((((.((((((..((((((((...)))).)))).))))))..)))))))))))))... (-252.80) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAGCCAAUGCCUACAAACCAUUAAUGCUUGUGCCUUGCACAGCAAACAAUGGGUAUAGAAUAAUAAAAGCAAUAUCCUUUCCACAAACUUUCAAUCGAGAAAGCUGUUGGAAAGGAUAUUGCUUUUUUAUGUUUUAUAAAGCGGUGUUCAACCUUUUGAACAAUAGAACUCACGUUUUUAGAAUGCACAUCGGCAGGUAGAGGCGUGAUUUAUCACGUUCCUGACACCAAAGAAAAAUCAAUGCGGAUAUAAGAAACGAAAUGAUUCACACCCCUAUAUUGAAGCGGUAGUUUUGUAAAGAUAAUUCGUUGAGAAAACGGUAAUUUCGAUUUGACGUUGCAAAAGCGUAGGUUUUGCAAGGCAAAAGAGCCGCUUUUACCGUGCAAAAGCGGCUCUUUUACAAUGCGAAACAAUAGGUUUUAUAACACACUGAUAAUAAAACGGUUACACAACAGUUAUGCUUGUAAAAAAUAUUUACACUAUUUUUGUCUUUUUUCCGUUUAUAAAAUACAGAAUACAAGCGAAGCAGAAAGAUGCCUGAAAGGAUAAACCUAUUCAGACAAAGUAAAACCAUUUGCCCGCCCCUACCAAUCUAUUAACUACCCGAAAUACGGCUCGCACAGUUCUCUUUCUACCAAAAGAGCGAAAAAACUACAAUCGGUAGAAUUAAAAAAGUAGUUUUUUAUUGAGUAAUUGCCAUUUUUUUCUUAUCUUUGUGUUAGAAUACACAAGACGCCCGCUUUUGCAAUGGCACAGUCUUUGUAUUUAAGGCAAUAAACAAAAGCAGCAUAUUCGCUUUUUGUUAUUGUCUAAUUGAAAUAAUAUAAGGAUACAAA ...((((.(((.......(((((..((((.((((...))))))))...))))).(((((((((..(((((((((((((((((((((..(((((......))))).)).)))))))))))))))))))...))))))))).((.(((((((((....))))))....(((.((((((((((....((((....((....(((..((((((....))))))..)))...))...((....))..))))......)))))))...))))))..))).)).....(((((((..((((((.((((((((......(((((((.((((((((((((..((..((((....(((...((((((((..(.(((((((((((((((.......))))))))))))))).)..))))))))....((((((((......(((.......(((.(((....))).)))..(((((((.................((((((.((((..........)))).)))))))))))))....))).....((.((((((((.....))).))))).))..)))))))).......)))..(((((..............(((.....))).((((.......(((((......))))))))).............)))))..........))))..))..)))))..)))))))..)))))))))))))))((((....)))).))))))..))))))).))).))))...(((((((((((..(((((((((.(((((..(((......))))))))))))))))).........)))))))))))..... (-229.83) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 864 490 441 103 54 pint:PI1760|5end_hypothetical_protein_1684413..1684643_POSITIVE 862 500 451 85 36 pint:PI1702|5end_hypothetical_protein_1620587..1620817_POSITIVE 778 510 461 95 46 pint:PI0926|5end_hypothetical_protein_856824..857054_POSITIVE 705 490 441 230 179 pint:PI0561|5end_hypothetical_protein_508952..509182_POSITIVE 682 500 451 85 36 pint:PI0037|5end_hypothetical_protein_39354..39584_POSITIVE 662 500 451 213 164 pint:PI0196|5end_hypothetical_protein_188435..188665_POSITIVE 648 507 461 65 20 pint:PI1829|5end_hypothetical_protein_1769255..1769485_POSITIVE 642 500 451 212 163 pint:PI1437|5end_hypothetical_protein_1356088..1356318_POSITIVE 642 500 451 85 36 pint:PI1436|5end_hypothetical_protein_1355961..1356191_POSITIVE 639 500 451 71 22 pint:PI0659|5end_hypothetical_protein_603203..603433_POSITIVE 633 650 601 150 101 pint:PI0069|5end_hypothetical_protein_67072..67302_POSITIVE 629 507 461 226 181 pint:PI2003|5end_hypothetical_protein_1960823..1961053_POSITIVE 629 507 461 65 20 pint:PI2002|5end_hypothetical_protein_1960662..1960892_POSITIVE 629 507 461 53 8 pint:PI1129|5end_hypothetical_protein_1055377..1055607_POSITIVE 629 500 451 193 145 pint:PI0211|5end_hypothetical_protein_204067..204297_POSITIVE 615 540 491 165 116 pint:PI0119|5end_hypothetical_protein_111506..111736_POSITIVE 611 498 453 57 12 pint:PI1694|5end_hypothetical_protein_1609717..1609947_POSITIVE 610 507 461 53 8 pint:PI2144|5end_hypothetical_protein_2091954..2092184_POSITIVE 610 507 461 196 151 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 597 500 451 184 135 pint:PI1295|5end_hypothetical_protein_1208636..1208866_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 862 500 451 118 69 pint:PI0560|3end_hypothetical_protein_508910..509060_POSITIVE 829 500 451 140 91 pint:PI0905|3end_hypothetical_protein_834697..834847_POSITIVE 827 488 441 151 104 pint:PI1761|3end_hypothetical_protein_1684543..1684693_POSITIVE 673 500 451 140 91 pint:PI1521|3end_hypothetical_protein_1441461..1441611_POSITIVE 664 500 452 49 1 pint:PI1520|3end_hypothetical_protein_1441370..1441520_POSITIVE 629 507 461 48 3 pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE 629 507 461 107 62 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 629 507 461 147 102 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 629 507 461 147 102 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 610 507 461 147 102 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 582 507 461 121 76 pint:PI1356|3end_hypothetical_protein_1273340..1273490_POSITIVE 581 429 381 135 87 pint:PI0069|3end_hypothetical_protein_67379..67529_POSITIVE 577 650 601 51 2 pint:PI0962|3end_phosphoglycerate_mutase_892702..892852_POSITIVE 571 429 382 135 88 pint:PI1064|3end_hypothetical_protein_983324..983474_POSITIVE 555 507 461 151 106 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 555 498 451 149 94 pint:PI1601|3end_hypothetical_protein_1530454..1530604_POSITIVE 555 507 461 147 102 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 555 507 461 48 3 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 553 645 605 42 2 pint:PI0117|3end_ribonuclease_HI_111314..111464_POSITIVE 548 507 461 147 102 pint:PI0670|3end_hypothetical_protein_611280..611430_POSITIVE