Origin IGS: taaataagaaagacaggcatatcgtttcgcctttctgtatagaaacaacccttttatccatcgtccaacttctcctatatacctttattatataggcgaaaaaacattataaaagtgtaaatatttttcacaagtatatccattgcgtaacaagctatctgtcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaaaggtttaatataggcgtttgatttattattttcctcatatctgcgctgctttttcgtgggtggaaggaacgtagtaacccactcccctacacattcaattcacctttccaacaaaagattacgaaaaacatttctaaactttttgtgcttctgaacaaaaagcagtacctttgtaaat .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 atttacaaaggtactgctttttgttcagaagcacaaaaagtttagaaatgtttttcgtaatcttttgttggaaaggtgaattgaatgtgtaggggagtgggttactacgttccttccacccacgaaaaagcagcgcagatatgaggaaaataataaatcaaacgcctatattaaacctttgattttgtaaagataattcggagggaaaatgataatttcgatttgacgttgcgaaagcgtatgttttgcgatgcaaaagagccgcttttaccgtgcaaaacctacgcttttacaatgcaaaacaataggttttataacacgctgacagatagcttgttacgcaatggatatacttgtgaaaaatatttacacttttataatgttttttcgcctatataataaaggtatataggagaagttggacgatggataaaagggttgtttctatacagaaaggcgaaacgatatgcctgtctttcttattta Mask Tandem Repeat Region ================================================ taaataagaaagacaggcatatcgtttcgcctttctgtatagaaacaacccttttatccatcgtccaacttctcctatatacctttattatataggcgaaaaaacattataaaagtgtaaatatttttcacaagtatatccattgcgtaacaagctatctgtcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaaaggtttaatataggcgtttgatttattattttcctcatatctgcgctgctttttcgtgggtggaaggaacgtagtaacccactcccctacacattcaattcacctttccaacaaaagattacgaaaaacatttctaaactttttgtgcttctgaacaaaaagcagtacctttgtaaat Find is-nt database================================================ Query_seq: PI1688:PI1689|PI1688:PI1689:possible GTPase:conserved hypothetical protein:->->:1603964..1604449 486 taaataagaaagacaggcatatcgtttcgcctttctgtatagaaacaacccttttatccatcgtccaacttctcctatatacctttattatataggcgaaaaaacattataaaagtgtaaatatttttcacaagtatatccattgcgtaacaagctatctgtcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaaaggtttaatataggcgtttgatttattattttcctcatatctgcgctgctttttcgtgggtggaaggaacgtagtaacccactcccctacacattcaattcacctttccaacaaaagattacgaaaaacatttctaaactttttgtgcttctgaacaaaaagcagtacctttgtaaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1688:PI1689|PI1688:PI1689:possible GTPase:conserved hypothetical protein:->->:1603964..1604449 486 taaataagaaagacaggcatatcgtttcgcctttctgtatagaaacaacccttttatccatcgtccaacttctcctatatacctttattatataggcgaaaaaacattataaaagtgtaaatatttttcacaagtatatccattgcgtaacaagctatctgtcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaaaggtttaatataggcgtttgatttattattttcctcatatctgcgctgctttttcgtgggtggaaggaacgtagtaacccactcccctacacattcaattcacctttccaacaaaagattacgaaaaacatttctaaactttttgtgcttctgaacaaaaagcagtacctttgtaaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1688:PI1689|PI1688:PI1689:possible GTPase:conserved hypothetical protein:->->:1603964..1604449 486 taaataagaaagacaggcatatcgtttcgcctttctgtatagaaacaacccttttatccatcgtccaacttctcctatatacctttattatataggcgaaaaaacattataaaagtgtaaatatttttcacaagtatatccattgcgtaacaagctatctgtcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaaaggtttaatataggcgtttgatttattattttcctcatatctgcgctgctttttcgtgggtggaaggaacgtagtaacccactcccctacacattcaattcacctttccaacaaaagattacgaaaaacatttctaaactttttgtgcttctgaacaaaaagcagtacctttgtaaat Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taaataagaaagacaggcatatcgtttcgcctttctgtatagaaacaacccttttatccatcgtccaacttctcctatatacctttattatataggcgaaaaaacattataaaagtgtaaatatttttcacaagtatatccattgcgtaacaagctatctgtcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaaaggtttaatataggcgtttgatttattattttcctcatatctgcgctgctttttcgtgggtggaaggaacgtagtaacccactcccctacacattcaattcacctttccaacaaaagattacgaaaaacatttctaaactttttgtgcttctgaacaaaaagcagtacctttgtaaat Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 209 End: 313 ................................................................................................................................................................................................................ M H G K S G S F A S Q N I R F R N V K S K L S F S L R I I F T K S K V ............................................................................................................................................................................. Protein_Len: 32 Strand: + Start: 231 End: 326 ...................................................................................................................................................................................................................................... M H R K T Y A F A T S N R N Y H F P S E L S L Q N Q R F N I G V ................................................................................................................................................................ Protein_Len: 37 Strand: + Start: 349 End: 459 ............................................................................................................................................................................................................................................................................................................................................................ M R C F F V G G R N V V T H S P T H S I H L S N K R L R K T F L N F L C F ........................... Protein_Len: 51 Strand: + Start: 333 End: 485 ............................................................................................................................................................................................................................................................................................................................................ M I F L I S A L L F R G W K E R S N P L P Y T F N S P F Q Q K I T K N I S K L F V L L N K K Q Y L C K . Protein_Len: 36 Strand: - Start: 300 End: 407 ........................................................................................................................................................................................................................................................................................................... L I L P K I Y A N S K N N E E Y R R Q K K T P P L F T T V W E G V C E M ............................................................................... Protein_Len: 60 Strand: - Start: 91 End: 294 .......................................................................................... H L Y K E C T Y G N R L L S D T L T N Y F R N N Q M T F A Y T K C P L L P E K A D C F M R K R L T L D F N D N E R R I M ................................................................................................................................................................................................ Protein_Len: 30 Strand: - Start: 2 End: 91 . F L F S L C I T E G K Q I S V V R K D M T W S R R Y V K I M ........................................................................................................................................................................................................................................................................................................................................................................................................... taaataagaaagacaggcatatcgtttcgcctttctgtatagaaacaacccttttatccatcgtccaacttctcctatatacctttattatataggcgaaaaaacattataaaagtgtaaatatttttcacaagtatatccattgcgtaacaagctatctgtcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaaaggtttaatataggcgtttgatttattattttcctcatatctgcgctgctttttcgtgggtggaaggaacgtagtaacccactcccctacacattcaattcacctttccaacaaaagattacgaaaaacatttctaaactttttgtgcttctgaacaaaaagcagtacctttgtaaat Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taaataagaaagacaggcatatcgtttcgcctttctgtatagaaacaacccttttatccatcgtccaacttctcctatatacctttattatataggcgaaaaaacattataaaagtgtaaatatttttcacaagtatatccattgcgtaacaagctatctgtcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaaaggtttaatataggcgtttgatttattattttcctcatatctgcgctgctttttcgtgggtggaaggaacgtagtaacccactcccctacacattcaattcacctttccaacaaaagattacgaaaaacatttctaaactttttgtgcttctgaacaaaaagcagtacctttgtaaat Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 75 HP_score: -9.1 Tail_Score: -3.54424 Start: 200 End: 250 Full_Region: TTTTGCATTGTAAAA GCGTAGGTTTTGCACGGTAAAAG CGGCT CTTTTGCATCGCAAAACATACGC TTTCGCAACGTCAAA .......................................................................................................................................................................................................GCGTAGGTTTTGCACGGTAAAAGCGGCTCTTTTGCATCGCAAAACATACGC............................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 81 HP_score: -9.1 Tail_Score: -4.13767 Start: 200 End: 250 Full_Region: tttgacgttgcgaaa gcgtatgttttgcgatgcaaaag agccg cttttaccgtgcaaaacctacgc ttttacaatgcaaaa .......................................................................................................................................................................................................gcgtatgttttgcgatgcaaaagagccgcttttaccgtgcaaaacctacgc............................................................................................................................................................................................................................................ Find igs database================================================ Query_seq: PI1688:PI1689|PI1688:PI1689:possible GTPase:conserved hypothetical protein:->->:1603964..1604449 486 taaataagaaagacaggcatatcgtttcgcctttctgtatagaaacaacccttttatccatcgtccaacttctcctatatacctttattatataggcgaaaaaacattataaaagtgtaaatatttttcacaagtatatccattgcgtaacaagctatctgtcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaaaggtttaatataggcgtttgatttattattttcctcatatctgcgctgctttttcgtgggtggaaggaacgtagtaacccactcccctacacattcaattcacctttccaacaaaagattacgaaaaacatttctaaactttttgtgcttctgaacaaaaagcagtacctttgtaaat Intra-Species Hit: Count: 43 Min: 1 Max: 486 Len: 486 Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 0.0 bit: 963.0 Len: 486 Query Start:1 Query End:486 Subject Strand: POSITIVE Subject Start: 1 Subject End: 486 taaataagaaagacaggcatatcgtttcgcctttctgtatagaaacaacccttttatccatcgtccaacttctcctatatacctttattatataggcgaaaaaacattataaaagtgtaaatatttttcacaagtatatccattgcgtaacaagctatctgtcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaaaggtttaatataggcgtttgatttattattttcctcatatctgcgctgctttttcgtgggtggaaggaacgtagtaacccactcccctacacattcaattcacctttccaacaaaagattacgaaaaacatttctaaactttttgtgcttctgaacaaaaagcagtacctttgtaaat taaataagaaagacaggcatatcgtttcgcctttctgtatagaaacaacccttttatccatcgtccaacttctcctatatacctttattatataggcgaaaaaacattataaaagtgtaaatatttttcacaagtatatccattgcgtaacaagctatctgtcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaaaggtttaatataggcgtttgatttattattttcctcatatctgcgctgctttttcgtgggtggaaggaacgtagtaacccactcccctacacattcaattcacctttccaacaaaagattacgaaaaacatttctaaactttttgtgcttctgaacaaaaagcagtacctttgtaaat Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 131 Query Start:174 Query End:304 Subject Strand: NEGATIVE Subject Start: 144 Subject End: 274 .............................................................................................................................................................................aaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaa...................................................................................................................................................................................... .............................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgtcaaatcgaaattatcattttttcaacgaattatctttacaaaa...................................................................................................................................................................................... HSP 2 e-value: 5.0E-6 bit: 54.0 Len: 43 Query Start:109 Query End:151 Subject Strand: NEGATIVE Subject Start: 297 Subject End: 339 ............................................................................................................ataaaagtgtaaatatttttcacaagtatatccattgcgtaac............................................................................................................................................................................................................................................................................................................................................... ............................................................................................................ataaaagtgtaaatatttttcacaagcgtaaccattgcataac............................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0854_PI0855|MiaB-like tRNA modifying enzyme:hypothetical protein|POSITIVE:POSITIVE|[788060,789233]|1174 HSP 1 e-value: 5.0E-43 bit: 176.0 Len: 153 Query Start:170 Query End:322 Subject Strand: NEGATIVE Subject Start: 723 Subject End: 875 .........................................................................................................................................................................ttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaaaggtttaatatagg.................................................................................................................................................................... .........................................................................................................................................................................ttataaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgttgcaaaacctacgctttcgcaacgccaaatcgaaattatcatttttcttgcgaactttctttacaaaattatagctttaatgtagg.................................................................................................................................................................... Subject: pint_PI1728_PI1729|ATP-dependent Clp protease, proteolytic subunit:FKBP-type peptidyl-prolyl cis-trans isomerase, trigger factor|POSITIVE:POSITIVE|[1647719,1648555]|837 HSP 1 e-value: 2.0E-39 bit: 165.0 Len: 143 Query Start:162 Query End:304 Subject Strand: POSITIVE Subject Start: 404 Subject End: 546 .................................................................................................................................................................tcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaa...................................................................................................................................................................................... .................................................................................................................................................................tcagtgtgttataaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaacgaattatctttacaaaa...................................................................................................................................................................................... Subject: pint_PI1441_PI1442|hypothetical protein:radical-activating enzyme (pyruvate-formate lyase-activating enzyme)|POSITIVE:POSITIVE|[1363734,1364088]|355 HSP 1 e-value: 2.0E-39 bit: 165.0 Len: 131 Query Start:174 Query End:304 Subject Strand: POSITIVE Subject Start: 86 Subject End: 216 .............................................................................................................................................................................aaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaa...................................................................................................................................................................................... .............................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgctttcgcaacgtcaaatcgaaaataccgttttccttgtaaattatctttacaaaa...................................................................................................................................................................................... Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 3.0E-38 bit: 161.0 Len: 137 Query Start:174 Query End:310 Subject Strand: NEGATIVE Subject Start: 135 Subject End: 271 .............................................................................................................................................................................aaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaaag................................................................................................................................................................................ .............................................................................................................................................................................aaaacctattgttttgcattgtaaaagcgtaggttttacacggtcaaagcggctgttttgcgatgcaaaacagccgctttcgcaatgccaaatcgaaattatcattttccttacgaattatccttacaaaaccaaag................................................................................................................................................................................ Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 4.0E-37 bit: 157.0 Len: 151 Query Start:160 Query End:310 Subject Strand: POSITIVE Subject Start: 219 Subject End: 368 ...............................................................................................................................................................tgtcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaaag................................................................................................................................................................................ ...............................................................................................................................................................tgtcagtgtattataaaacctattgttttgcattccaaaagtgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaatgccaaatcgaaattatcgtttt-tcaatgaattatctttacaaaaccaaag................................................................................................................................................................................ Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 1.0E-34 bit: 149.0 Len: 131 Query Start:174 Query End:304 Subject Strand: POSITIVE Subject Start: 57 Subject End: 187 .............................................................................................................................................................................aaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaa...................................................................................................................................................................................... .............................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaa...................................................................................................................................................................................... Subject: pint_PI0195_PI0196|epimerase/reductase:hypothetical protein|POSITIVE:POSITIVE|[188263,188574]|312 HSP 1 e-value: 1.0E-34 bit: 149.0 Len: 139 Query Start:163 Query End:301 Subject Strand: NEGATIVE Subject Start: 148 Subject End: 286 ..................................................................................................................................................................cagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttaca......................................................................................................................................................................................... ..................................................................................................................................................................cagcgtattacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgatgcaaaacagccgctttcgcaatgccaaatcgaaattgtcattttctctacgaattatttttaca......................................................................................................................................................................................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 2.0E-33 bit: 145.0 Len: 145 Query Start:114 Query End:258 Subject Strand: POSITIVE Subject Start: 131 Subject End: 275 .................................................................................................................agtgtaaatatttttcacaagtatatccattgcgtaacaagctatctgtcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaa.................................................................................................................................................................................................................................... .................................................................................................................agtgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaa.................................................................................................................................................................................................................................... Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 3.0E-32 bit: 141.0 Len: 131 Query Start:174 Query End:304 Subject Strand: POSITIVE Subject Start: 107 Subject End: 237 .............................................................................................................................................................................aaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaa...................................................................................................................................................................................... .............................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttacacggcaaaagcggctgttttgcgttgcaaaacagccgctttcgcaatgccaaatcgaaattatcatttttcttacgaataatctttacaaaa...................................................................................................................................................................................... Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 4.0E-31 bit: 137.0 Len: 137 Query Start:174 Query End:310 Subject Strand: NEGATIVE Subject Start: 73 Subject End: 209 .............................................................................................................................................................................aaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaaag................................................................................................................................................................................ .............................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcatcgcaaaacagccgctttcgcaatgccaaagcgcaattaccacttttcaacgaaattatctttacaaaagcaaag................................................................................................................................................................................ Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 6.0E-30 bit: 133.0 Len: 139 Query Start:174 Query End:312 Subject Strand: POSITIVE Subject Start: 387 Subject End: 525 .............................................................................................................................................................................aaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaaaggt.............................................................................................................................................................................. .............................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaacagccgctttcgcaatgccaaatcgaaattatcatttttcatcagaattatctttacaaagtcagaggt.............................................................................................................................................................................. Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 2.0E-27 bit: 125.0 Len: 131 Query Start:174 Query End:304 Subject Strand: NEGATIVE Subject Start: 10 Subject End: 140 .............................................................................................................................................................................aaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaa...................................................................................................................................................................................... .............................................................................................................................................................................aaaacctattgttttgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccactttcgcaacgtcaaatcgaaattatcatttttcttcggaattatctttacaaaa...................................................................................................................................................................................... Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 137 Query Start:170 Query End:306 Subject Strand: NEGATIVE Subject Start: 153 Subject End: 289 .........................................................................................................................................................................ttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatc.................................................................................................................................................................................... .........................................................................................................................................................................ttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagcagctttcgcaacgtcaaatcgaaattatcgttttcttaacgaattatctttacaaaatc.................................................................................................................................................................................... Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 137 Query Start:170 Query End:306 Subject Strand: NEGATIVE Subject Start: 139 Subject End: 275 .........................................................................................................................................................................ttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatc.................................................................................................................................................................................... .........................................................................................................................................................................ttataaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaagagaattatctttacaaaatc.................................................................................................................................................................................... Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 137 Query Start:174 Query End:310 Subject Strand: NEGATIVE Subject Start: 195 Subject End: 330 .............................................................................................................................................................................aaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaaag................................................................................................................................................................................ .............................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgc-aaacagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaaccaaag................................................................................................................................................................................ Subject: pint_PI1981_PI1982|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1938199,1938578]|380 HSP 1 e-value: 1.0E-25 bit: 119.0 Len: 104 Query Start:170 Query End:273 Subject Strand: NEGATIVE Subject Start: 175 Subject End: 278 .........................................................................................................................................................................ttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaatt..................................................................................................................................................................................................................... .........................................................................................................................................................................ttataaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctgttttgaaatgcaaaacagccgctttcgcaatgtcaaaccgaaatt..................................................................................................................................................................................................................... Subject: pint_PI1958_PI1959|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1917430,1917847]|418 HSP 1 e-value: 1.0E-25 bit: 119.0 Len: 104 Query Start:170 Query End:273 Subject Strand: NEGATIVE Subject Start: 213 Subject End: 316 .........................................................................................................................................................................ttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaatt..................................................................................................................................................................................................................... .........................................................................................................................................................................ttataaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctgttttgcaatgcaaaacagccgcttttgcaatgtcaaaccgaaatt..................................................................................................................................................................................................................... Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 1.0E-25 bit: 119.0 Len: 196 Query Start:109 Query End:304 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 245 ............................................................................................................ataaaagtgtaaatatttttcacaagtatatccattgcgtaacaagctatctgtcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaa...................................................................................................................................................................................... ............................................................................................................ataaaagtgtaaatatttttcacaagcttacctattacgtaactatctaaccatcagcgtattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaacggaattatctttacaaaa...................................................................................................................................................................................... Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 142 Query Start:167 Query End:308 Subject Strand: NEGATIVE Subject Start: 65 Subject End: 206 ......................................................................................................................................................................gtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaa.................................................................................................................................................................................. ......................................................................................................................................................................gtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaacgtcaaatcgaaattatagttttcttaatgaattatctttacagaatcaa.................................................................................................................................................................................. Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 1.0E-21 bit: 105.0 Len: 169 Query Start:113 Query End:281 Subject Strand: NEGATIVE Subject Start: 136 Subject End: 304 ................................................................................................................aagtgtaaatatttttcacaagtatatccattgcgtaacaagctatctgtcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcatttt............................................................................................................................................................................................................. ................................................................................................................aagtgtaaatatttttcgcaaccgtatctcttgcgcaacacgctctttatcaacgcattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaatcgaaattaccatttt............................................................................................................................................................................................................. Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 1.0E-21 bit: 105.0 Len: 109 Query Start:174 Query End:282 Subject Strand: POSITIVE Subject Start: 88 Subject End: 196 .............................................................................................................................................................................aaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttc............................................................................................................................................................................................................ .............................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaatcgaaattaccattttc............................................................................................................................................................................................................ Subject: pint_PI1803_PI1804|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1737852,1738248]|397 HSP 1 e-value: 6.0E-21 bit: 103.0 Len: 132 Query Start:173 Query End:304 Subject Strand: NEGATIVE Subject Start: 266 Subject End: 397 ............................................................................................................................................................................taaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaa...................................................................................................................................................................................... ............................................................................................................................................................................taaaacctattgttttgcattgtaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaatgccaaatcgaaattaccgttttctttcggaataatctttacaaaa...................................................................................................................................................................................... HSP 2 e-value: 5.0E-6 bit: 54.0 Len: 35 Query Start:219 Query End:253 Subject Strand: POSITIVE Subject Start: 317 Subject End: 351 ..........................................................................................................................................................................................................................aaagcggctcttttgcatcgcaaaacatacgcttt......................................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt......................................................................................................................................................................................................................................... Subject: pint_PI0652_PI0653|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[595853,596185]|333 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 131 Query Start:174 Query End:304 Subject Strand: NEGATIVE Subject Start: 147 Subject End: 277 .............................................................................................................................................................................aaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaa...................................................................................................................................................................................... .............................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttgcaaggcaaaagagccgcttttggacggtaaaacctacactttcgcagtgccaaatcgaaattatcgtttttcttcagaattatctttacaaaa...................................................................................................................................................................................... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 9.0E-20 bit: 99.6 Len: 142 Query Start:169 Query End:310 Subject Strand: POSITIVE Subject Start: 327 Subject End: 468 ........................................................................................................................................................................gttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaaag................................................................................................................................................................................ ........................................................................................................................................................................gttacaaaacctattgttttgcatcctaaaagcggctgttttgcacggtaaaagcataggttttgcgttgcaaaagagctgctttcgcaacgtcaaatcgaaattatcgttttcttaacgaattatctttacaaaaccaaag................................................................................................................................................................................ Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 112 Query Start:166 Query End:277 Subject Strand: POSITIVE Subject Start: 403 Subject End: 514 .....................................................................................................................................................................cgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatca................................................................................................................................................................................................................. .....................................................................................................................................................................cgtgttacaaaacctattgttttgcattccaaaagcggctgttttgcacggcaaaagcgtaggttttacctcgcaaaacagccgctttcgcaacgtcaaaacgaaattatca................................................................................................................................................................................................................. Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 132 Query Start:173 Query End:304 Subject Strand: NEGATIVE Subject Start: 215 Subject End: 346 ............................................................................................................................................................................taaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaa...................................................................................................................................................................................... ............................................................................................................................................................................taaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgccaaatcgaaattatcgtttttcagcgaaattatctttacaaaa...................................................................................................................................................................................... Subject: pint_PI2056_PI2057|conserved hypothetical protein:conserved hypothetical protein; possible metal-dependent membrane protease|POSITIVE:POSITIVE|[2014489,2015078]|590 HSP 1 e-value: 5.0E-18 bit: 93.7 Len: 135 Query Start:174 Query End:308 Subject Strand: NEGATIVE Subject Start: 337 Subject End: 471 .............................................................................................................................................................................aaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaa.................................................................................................................................................................................. .............................................................................................................................................................................aaaacctattgtttcgcattccaaaagcggctgttttgcatggtaaaagcgtaagttttgcattacaaaagagccgctttcgcaacgtcaaatcgaaattattgttttcttaacgaattatctttacaaaatcaa.................................................................................................................................................................................. Subject: pint_PI0694_PI0695|Na+/dicarboxylate or sulfate symporter:xanthine/uracil permease family protein|POSITIVE:POSITIVE|[631238,631552]|315 HSP 1 e-value: 5.0E-18 bit: 93.7 Len: 131 Query Start:174 Query End:304 Subject Strand: NEGATIVE Subject Start: 88 Subject End: 218 .............................................................................................................................................................................aaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaa...................................................................................................................................................................................... .............................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcagtgtcaaatcgaaattaccgttttccgtcggaattatctttacaaaa...................................................................................................................................................................................... HSP 2 e-value: 5.0E-6 bit: 54.0 Len: 35 Query Start:219 Query End:253 Subject Strand: POSITIVE Subject Start: 139 Subject End: 173 ..........................................................................................................................................................................................................................aaagcggctcttttgcatcgcaaaacatacgcttt......................................................................................................................................................................................................................................... ..........................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt......................................................................................................................................................................................................................................... Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 9.0E-17 bit: 89.7 Len: 137 Query Start:174 Query End:310 Subject Strand: POSITIVE Subject Start: 41 Subject End: 177 .............................................................................................................................................................................aaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaaag................................................................................................................................................................................ .............................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgtaaaagagccgctttcgcaacgtcaaaacgaaattattgtttttcatcagaattatctttacaaaaccaaag................................................................................................................................................................................ Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 136 Query Start:170 Query End:305 Subject Strand: NEGATIVE Subject Start: 110 Subject End: 245 .........................................................................................................................................................................ttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaat..................................................................................................................................................................................... .........................................................................................................................................................................ttataaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcagtttttaacagaattatctttacaaaat..................................................................................................................................................................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 165 Query Start:111 Query End:275 Subject Strand: NEGATIVE Subject Start: 120 Subject End: 284 ..............................................................................................................aaaagtgtaaatatttttcacaagtatatccattgcgtaacaagctatctgtcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattat................................................................................................................................................................................................................... ..............................................................................................................aaaagtgtaaatatttttcacaagcatagttgttgtctaactcgctatatttcaacgtattgcaaaacctattgttttgcactccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgttttcgcaatgtcaaatcgaaattat................................................................................................................................................................................................................... Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 8.0E-14 bit: 79.8 Len: 196 Query Start:109 Query End:304 Subject Strand: POSITIVE Subject Start: 30 Subject End: 225 ............................................................................................................ataaaagtgtaaatatttttcacaagtatatccattgcgtaacaagctatctgtcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaa...................................................................................................................................................................................... ............................................................................................................ataaatgtgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa...................................................................................................................................................................................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 8.0E-14 bit: 79.8 Len: 108 Query Start:174 Query End:281 Subject Strand: NEGATIVE Subject Start: 169 Subject End: 276 .............................................................................................................................................................................aaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcatttt............................................................................................................................................................................................................. .............................................................................................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcatttt............................................................................................................................................................................................................. Subject: pint_PI1915_PI1916|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1859967,1860350]|384 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 139 Query Start:170 Query End:308 Subject Strand: NEGATIVE Subject Start: 110 Subject End: 248 .........................................................................................................................................................................ttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaa.................................................................................................................................................................................. .........................................................................................................................................................................ttataaaacctattgttttgcattccaaaagcggctgttttgcaacgtaaaacatacgcttttaccgtgcaaaacagccgctttcgcaatgccaaatcgaaattatcgtttttcgtcagaattatttttacaaaatcaa.................................................................................................................................................................................. Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 135 Query Start:169 Query End:303 Subject Strand: NEGATIVE Subject Start: 200 Subject End: 334 ........................................................................................................................................................................gttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaa....................................................................................................................................................................................... ........................................................................................................................................................................gttataaaacctattgttttgcgttccaaaaacggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaacggaattatctttacaaa....................................................................................................................................................................................... Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 190 Query Start:115 Query End:304 Subject Strand: POSITIVE Subject Start: 39 Subject End: 228 ..................................................................................................................gtgtaaatatttttcacaagtatatccattgcgtaacaagctatctgtcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaa...................................................................................................................................................................................... ..................................................................................................................gtgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaa...................................................................................................................................................................................... Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 2.0E-11 bit: 71.9 Len: 104 Query Start:162 Query End:265 Subject Strand: POSITIVE Subject Start: 243 Subject End: 346 .................................................................................................................................................................tcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaa............................................................................................................................................................................................................................. .................................................................................................................................................................tcagtgtgttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaa............................................................................................................................................................................................................................. Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 3.0E-10 bit: 67.9 Len: 138 Query Start:174 Query End:311 Subject Strand: NEGATIVE Subject Start: 178 Subject End: 315 .............................................................................................................................................................................aaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaatcaaagg............................................................................................................................................................................... .............................................................................................................................................................................aaaacctattgtttcgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcacaaaagagccgctttcgcaacgccaaagcgcagttatcaatttttaagagaattatctttacaaaaacaaagg............................................................................................................................................................................... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 3.0E-10 bit: 67.9 Len: 130 Query Start:174 Query End:303 Subject Strand: NEGATIVE Subject Start: 480 Subject End: 609 .............................................................................................................................................................................aaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaa....................................................................................................................................................................................... .............................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcatggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacagaattatctttacaaa....................................................................................................................................................................................... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 2.0E-8 bit: 61.9 Len: 131 Query Start:174 Query End:304 Subject Strand: POSITIVE Subject Start: 97 Subject End: 227 .............................................................................................................................................................................aaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaa...................................................................................................................................................................................... .............................................................................................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaa...................................................................................................................................................................................... Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 8.0E-8 bit: 60.0 Len: 110 Query Start:156 Query End:265 Subject Strand: NEGATIVE Subject Start: 265 Subject End: 374 ...........................................................................................................................................................tatctgtcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaa............................................................................................................................................................................................................................. ...........................................................................................................................................................tatctatcagtgtgttataaaatatgttgttttgcgttccaaaagcggctgttttgcaaggtaaaagagccgcttttggcgtgcaaaacctacgctttcgcaacgtcaaa............................................................................................................................................................................................................................. HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 49 Query Start:197 Query End:245 Subject Strand: POSITIVE Subject Start: 277 Subject End: 325 ....................................................................................................................................................................................................aaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaaca................................................................................................................................................................................................................................................. ....................................................................................................................................................................................................aaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaaca................................................................................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAUAAGAAAGACAGGCAUAUCGUUUCGCCUUUCUGUAUAGAAACAACCCUUUUAUCCAUCGUCCAACUUCUCCUAUAUACCUUUAUUAUAUAGGCGAAAAAACAUUAUAAAAGUGUAAAUAUUUUUCACAAGUAUAUCCAUUGCGUAACAAGCUAUCUGUCAGCGUGUUAUAAAACCUAUUGUUUUGCAUUGUAAAAGCGUAGGUUUUGCACGGUAAAAGCGGCUCUUUUGCAUCGCAAAACAUACGCUUUCGCAACGUCAAAUCGAAAUUAUCAUUUUCCCUCCGAAUUAUCUUUACAAAAUCAAAGGUUUAAUAUAGGCGUUUGAUUUAUUAUUUUCCUCAUAUCUGCGCUGCUUUUUCGUGGGUGGAAGGAACGUAGUAACCCACUCCCCUACACAUUCAAUUCACCUUUCCAACAAAAGAUUACGAAAAACAUUUCUAAACUUUUUGUGCUUCUGAACAAAAAGCAGUACCUUUGUAAAU .......(((((..((((..........)))).........(((.....(((((((((((.((......(((.((((((((.......)))))))).)))..........(((((((((((.((..(((.................((((((.(((.......))).))))))........(((.(((((.(((..((((((((.(((((((...(((((((.....)))))))...))))))).))))))))..))).).)))).)))..................)))..)).))))).((((((((.(((((...))))).)))))))).......................)))))).)))))))))))))...((((............))))...))).......)))))..(((((.(.....((((....))))....((((((((........)))))))).....).))))).... (-104.40) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AUUUACAAAGGUACUGCUUUUUGUUCAGAAGCACAAAAAGUUUAGAAAUGUUUUUCGUAAUCUUUUGUUGGAAAGGUGAAUUGAAUGUGUAGGGGAGUGGGUUACUACGUUCCUUCCACCCACGAAAAAGCAGCGCAGAUAUGAGGAAAAUAAUAAAUCAAACGCCUAUAUUAAACCUUUGAUUUUGUAAAGAUAAUUCGGAGGGAAAAUGAUAAUUUCGAUUUGACGUUGCGAAAGCGUAUGUUUUGCGAUGCAAAAGAGCCGCUUUUACCGUGCAAAACCUACGCUUUUACAAUGCAAAACAAUAGGUUUUAUAACACGCUGACAGAUAGCUUGUUACGCAAUGGAUAUACUUGUGAAAAAUAUUUACACUUUUAUAAUGUUUUUUCGCCUAUAUAAUAAAGGUAUAUAGGAGAAGUUGGACGAUGGAUAAAAGGGUUGUUUCUAUACAGAAAGGCGAAACGAUAUGCCUGUCUUUCUUAUUUA ................((((((((..(((((((............((((((((((((((((((.((((.....((((...(((...(((.((((((((((....)))).)))))).)))...........(((((......(((.............)))...((((((......(((((((..((((....)))).)))))))...............(.((((.(((((..((((((((.((((((((....(((((.....)))))....)))))))).))))))))..))))))))).).)))))).........))))).)))...)))).....)))).)))).)))....)))))))))))...(((((((..(((((((((.((((((((.......)))))))).))))..)))))....)))))))...)))))))..))))))))..((((.((((....))))))))....... (-121.52) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 898 250 201 77 28 pint:PI1702|5end_hypothetical_protein_1620587..1620817_POSITIVE 889 270 221 97 48 pint:PI0926|5end_hypothetical_protein_856824..857054_POSITIVE 864 249 201 231 183 pint:PI0561|5end_hypothetical_protein_508952..509182_POSITIVE 786 260 211 195 147 pint:PI0211|5end_hypothetical_protein_204067..204297_POSITIVE 784 230 181 57 8 pint:PI0037|5end_hypothetical_protein_39354..39584_POSITIVE 773 240 192 194 141 pint:PI1437|5end_hypothetical_protein_1356088..1356318_POSITIVE 773 240 192 67 14 pint:PI1436|5end_hypothetical_protein_1355961..1356191_POSITIVE 730 227 181 182 136 pint:PI0196|5end_hypothetical_protein_188435..188665_POSITIVE 700 260 211 118 66 pint:PI1760|5end_hypothetical_protein_1684413..1684643_POSITIVE 680 260 211 127 78 pint:PI0867|5end_hypothetical_protein_803859..804089_POSITIVE 680 260 211 127 78 pint:PI0119|5end_hypothetical_protein_111506..111736_POSITIVE 680 260 211 68 19 pint:PI0089|5end_hypothetical_protein_88162..88392_POSITIVE 679 260 211 186 137 pint:PI1295|5end_hypothetical_protein_1208636..1208866_POSITIVE 675 227 181 116 70 pint:PI1371|5end_hypothetical_protein_1292359..1292589_POSITIVE 675 258 211 81 34 pint:PI1204|5end_hypothetical_protein_1124430..1124660_POSITIVE 673 250 201 63 14 pint:PI0659|5end_hypothetical_protein_603203..603433_POSITIVE 671 258 211 63 16 pint:PI0638|5end_hypothetical_protein_582218..582448_POSITIVE 664 217 172 229 182 pint:PI0949|5end_endonuclease_882264..882494_POSITIVE 661 220 171 194 145 pint:PI0575|5end_hypothetical_protein_519561..519791_POSITIVE 641 220 173 139 92 pint:PI1804|5end_hypothetical_protein_1738109..1738339_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 922 260 211 120 71 pint:PI0560|3end_hypothetical_protein_508910..509060_POSITIVE 867 260 211 142 93 pint:PI0905|3end_hypothetical_protein_834697..834847_POSITIVE 730 250 201 132 83 pint:PI1521|3end_hypothetical_protein_1441461..1441611_POSITIVE 715 270 221 61 12 pint:PI1520|3end_hypothetical_protein_1441370..1441520_POSITIVE 627 260 211 120 71 pint:PI0819|3end_hypothetical_protein_759919..760069_POSITIVE 624 220 171 146 97 pint:PI1294|3end_hypothetical_protein_1208716..1208866_POSITIVE 615 220 171 146 97 pint:PI0659|3end_hypothetical_protein_603396..603546_POSITIVE 577 220 171 129 80 pint:PI0815|3end_hypothetical_protein_754677..754827_POSITIVE 577 220 171 129 80 pint:PI0081|3end_hypothetical_protein_80700..80850_POSITIVE 576 244 207 149 112 pint:PI1761|3end_hypothetical_protein_1684543..1684693_POSITIVE 567 258 211 91 44 pint:PI0567|3end_hypothetical_protein_513055..513205_POSITIVE 564 300 251 77 28 pint:PI0574|3end_hypothetical_protein_519444..519594_POSITIVE 553 220 173 129 82 pint:PI0095|3end_hypothetical_protein_91850..92000_POSITIVE 546 258 211 146 94 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 536 210 162 116 69 pint:PI1252|3end_hypothetical_protein_1175440..1175590_POSITIVE 532 224 181 145 102 pint:PI1797|3end_hypothetical_protein_1731559..1731709_POSITIVE 532 224 181 145 102 pint:PI0885|3end_hypothetical_protein_817563..817713_POSITIVE 532 224 181 145 102 pint:PI0866|3end_hypothetical_protein_803993..804143_POSITIVE 532 224 181 145 102 pint:PI0820|3end_hypothetical_protein_759980..760130_POSITIVE 532 224 181 145 102 pint:PI0089|3end_hypothetical_protein_88355..88505_POSITIVE