Origin IGS:
tgactttttaacggaattctctttacgaagttaaacagaaagactctcactgcttcaccagtaggtttgttaaaaaatatctgcgatatagcctaccctaccaactttcttataccgaactaacgttatatatacattcgtcagacagtaataatcaagatgtttagaagttataaacatctaagaaatatacagaaactattaatgcaaaccataaaaaatatatcattctataacaaatatttaatttcctttctgattgtaaaaaataataattatatttgcaacaccactacataaaggttgattaatacttaaaagcatataccaaaggcagcaaaagggagtcagctgtcgtacctaaacaaaaaagtagctcccctatttaacaactataatctattggaaatatgaaaagaaagcacttacacgtaatcggtttcttgcttgcagcattattcctatctatgcctaccaaggctcaaacacaggaagatacttacaagagactgccattgaaccaacaaaaagcacccatgggaaatttacctccagaactaaaagggttggaatttgacgatttctatggtgcaaactatttcccacaaaaggtaggagaaccctacacgcctatcttttatgtgttctat
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
atagaacacataaaagataggcgtgtagggttctcctaccttttgtgggaaatagtttgcaccatagaaatcgtcaaattccaacccttttagttctggaggtaaatttcccatgggtgctttttgttggttcaatggcagtctcttgtaagtatcttcctgtgtttgagccttggtaggcatagataggaataatgctgcaagcaagaaaccgattacgtgtaagtgctttcttttcatatttccaatagattatagttgttaaataggggagctacttttttgtttaggtacgacagctgactcccttttgctgcctttggtatatgcttttaagtattaatcaacctttatgtagtggtgttgcaaatataattattattttttacaatcagaaaggaaattaaatatttgttatagaatgatatattttttatggtttgcattaatagtttctgtatatttcttagatgtttataacttctaaacatcttgattattactgtctgacgaatgtatatataacgttagttcggtataagaaagttggtagggtaggctatatcgcagatattttttaacaaacctactggtgaagcagtgagagtctttctgtttaacttcgtaaagagaattccgttaaaaagtca

Mask Tandem Repeat Region ================================================
tgactttttaacggaattctctttacgaagttaaacagaaagactctcactgcttcaccagtaggtttgttaaaaaatatctgcgatatagcctaccctaccaactttcttataccgaactaacgttatatatacattcgtcagacagtaataatcaagatgtttagaagttataaacatctaagaaatatacagaaactattaatgcaaaccataaaaaatatatcattctataacaaatatttaatttcctttctgattgtaaaaaataataattatatttgcaacaccactacataaaggttgattaatacttaaaagcatataccaaaggcagcaaaagggagtcagctgtcgtacctaaacaaaaaagtagctcccctatttaacaactataatctattggaaatatgaaaagaaagcacttacacgtaatcggtttcttgcttgcagcattattcctatctatgcctaccaaggctcaaacacaggaagatacttacaagagactgccattgaaccaacaaaaagcacccatgggaaatttacctccagaactaaaagggttggaatttgacgatttctatggtgcaaactatttcccacaaaaggtaggagaaccctacacgcctatcttttatgtgttctat

Find is-nt database================================================
Query_seq: PI1601:PI1602|PI1601:PI1602:hypothetical protein:conserved hypothetical protein; possible internalin-related protein:->->:1530515..1531164 650
tgactttttaacggaattctctttacgaagttaaacagaaagactctcactgcttcaccagtaggtttgttaaaaaatatctgcgatatagcctaccctaccaactttcttataccgaactaacgttatatatacattcgtcagacagtaataatcaagatgtttagaagttataaacatctaagaaatatacagaaactattaatgcaaaccataaaaaatatatcattctataacaaatatttaatttcctttctgattgtaaaaaataataattatatttgcaacaccactacataaaggttgattaatacttaaaagcatataccaaaggcagcaaaagggagtcagctgtcgtacctaaacaaaaaagtagctcccctatttaacaactataatctattggaaatatgaaaagaaagcacttacacgtaatcggtttcttgcttgcagcattattcctatctatgcctaccaaggctcaaacacaggaagatacttacaagagactgccattgaaccaacaaaaagcacccatgggaaatttacctccagaactaaaagggttggaatttgacgatttctatggtgcaaactatttcccacaaaaggtaggagaaccctacacgcctatcttttatgtgttctat
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: PI1601:PI1602|PI1601:PI1602:hypothetical protein:conserved hypothetical protein; possible internalin-related protein:->->:1530515..1531164 650
tgactttttaacggaattctctttacgaagttaaacagaaagactctcactgcttcaccagtaggtttgttaaaaaatatctgcgatatagcctaccctaccaactttcttataccgaactaacgttatatatacattcgtcagacagtaataatcaagatgtttagaagttataaacatctaagaaatatacagaaactattaatgcaaaccataaaaaatatatcattctataacaaatatttaatttcctttctgattgtaaaaaataataattatatttgcaacaccactacataaaggttgattaatacttaaaagcatataccaaaggcagcaaaagggagtcagctgtcgtacctaaacaaaaaagtagctcccctatttaacaactataatctattggaaatatgaaaagaaagcacttacacgtaatcggtttcttgcttgcagcattattcctatctatgcctaccaaggctcaaacacaggaagatacttacaagagactgccattgaaccaacaaaaagcacccatgggaaatttacctccagaactaaaagggttggaatttgacgatttctatggtgcaaactatttcccacaaaaggtaggagaaccctacacgcctatcttttatgtgttctat
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find nr database================================================
Query_seq: PI1601:PI1602|PI1601:PI1602:hypothetical protein:conserved hypothetical protein; possible internalin-related protein:->->:1530515..1531164 650
tgactttttaacggaattctctttacgaagttaaacagaaagactctcactgcttcaccagtaggtttgttaaaaaatatctgcgatatagcctaccctaccaactttcttataccgaactaacgttatatatacattcgtcagacagtaataatcaagatgtttagaagttataaacatctaagaaatatacagaaactattaatgcaaaccataaaaaatatatcattctataacaaatatttaatttcctttctgattgtaaaaaataataattatatttgcaacaccactacataaaggttgattaatacttaaaagcatataccaaaggcagcaaaagggagtcagctgtcgtacctaaacaaaaaagtagctcccctatttaacaactataatctattggaaatatgaaaagaaagcacttacacgtaatcggtttcttgcttgcagcattattcctatctatgcctaccaaggctcaaacacaggaagatacttacaagagactgccattgaaccaacaaaaagcacccatgggaaatttacctccagaactaaaagggttggaatttgacgatttctatggtgcaaactatttcccacaaaaggtaggagaaccctacacgcctatcttttatgtgttctat
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

tgactttttaacggaattctctttacgaagttaaacagaaagactctcactgcttcaccagtaggtttgttaaaaaatatctgcgatatagcctaccctaccaactttcttataccgaactaacgttatatatacattcgtcagacagtaataatcaagatgtttagaagttataaacatctaagaaatatacagaaactattaatgcaaaccataaaaaatatatcattctataacaaatatttaatttcctttctgattgtaaaaaataataattatatttgcaacaccactacataaaggttgattaatacttaaaagcatataccaaaggcagcaaaagggagtcagctgtcgtacctaaacaaaaaagtagctcccctatttaacaactataatctattggaaatatgaaaagaaagcacttacacgtaatcggtttcttgcttgcagcattattcctatctatgcctaccaaggctcaaacacaggaagatacttacaagagactgccattgaaccaacaaaaagcacccatgggaaatttacctccagaactaaaagggttggaatttgacgatttctatggtgcaaactatttcccacaaaaggtaggagaaccctacacgcctatcttttatgtgttctat
Predict ORF larger than 30AA ================================================
Protein_Len: 35	Strand: +	Start: 16	End: 120
............... M  L  F  T  K  L  N  R  K  T  L  T  A  S  P  V  G  L  L  K  N  I  C  D  I  A  Y  P  T  N  F  L  I  P  N ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 56	Strand: +	Start: 130	End: 297
................................................................................................................................. M  Y  I  R  Q  T  V  I  I  K  M  F  R  S  Y  K  H  L  R  N  I  Q  K  L  L  M  Q  T  I  K  N  I  S  F  Y  N  K  Y  L  I  S  F  L  I  V  K  N  N  N  Y  I  C  N  T  T  T .................................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 60	Strand: +	Start: 395	End: 574
.......................................................................................................................................................................................................................................................................................................................................................................................................... M  I  Y  W  K  Y  E  K  K  A  L  T  R  N  R  F  L  A  C  S  I  I  P  I  Y  A  Y  Q  G  S  N  T  G  R  Y  L  Q  E  T  A  I  E  P  T  K  S  T  H  G  K  F  T  S  R  T  K  R  V  G  I ............................................................................
Protein_Len: 60	Strand: +	Start: 402	End: 650
................................................................................................................................................................................................................................................................................................................................................................................................................. M  G  N  M  K  R  K  H  L  H  V  I  G  F  L  L  A  A  L  F  L  S  M  P  T  K  A  Q  T  Q  E  D  T  Y  K  R  L  P  L  N  Q  Q  K  A  P  M  G  N  L  P  P  E  L  K  G  L  E  F  D  D 
Protein_Len: 30	Strand: -	Start: 561	End: 650
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ F  P  Q  F  K  V  I  E  I  T  C  V  I  E  W  L  L  Y  S  F  G  V  R  R  D  K  I  H  E  M 
Protein_Len: 44	Strand: -	Start: 475	End: 606
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... W  P  E  F  V  P  L  Y  K  C  S  V  A  M  S  G  V  F  L  V  W  P  F  N  V  E  L  V  L  L  T  P  I  Q  R  N  R  H  H  L  S  N  G  M ............................................
Protein_Len: 30	Strand: -	Start: 389	End: 478
.................................................................................................................................................................................................................................................................................................................................................................................................... C  S  Y  D  I  P  F  I  F  L  F  C  K  C  T  I  P  K  K  S  A  A  N  N  R  D  I  G  V  M ............................................................................................................................................................................
Protein_Len: 35	Strand: -	Start: 247	End: 351
...................................................................................................................................................................................................................................................... N  G  K  Q  N  Y  F  I  I  I  I  N  A  V  G  S  C  L  P  Q  N  I  S  L  L  M  Y  W  L  C  C  F  P  T  M ...........................................................................................................................................................................................................................................................................................................
Protein_Len: 36	Strand: -	Start: 73	End: 180
........................................................................ F  I  D  A  I  Y  G  V  R  G  V  K  K  Y  R  V  L  T  I  Y  V  N  T  L  C  Y  Y  D  L  H  K  S  T  I  F  M ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

tgactttttaacggaattctctttacgaagttaaacagaaagactctcactgcttcaccagtaggtttgttaaaaaatatctgcgatatagcctaccctaccaactttcttataccgaactaacgttatatatacattcgtcagacagtaataatcaagatgtttagaagttataaacatctaagaaatatacagaaactattaatgcaaaccataaaaaatatatcattctataacaaatatttaatttcctttctgattgtaaaaaataataattatatttgcaacaccactacataaaggttgattaatacttaaaagcatataccaaaggcagcaaaagggagtcagctgtcgtacctaaacaaaaaagtagctcccctatttaacaactataatctattggaaatatgaaaagaaagcacttacacgtaatcggtttcttgcttgcagcattattcctatctatgcctaccaaggctcaaacacaggaagatacttacaagagactgccattgaaccaacaaaaagcacccatgggaaatttacctccagaactaaaagggttggaatttgacgatttctatggtgcaaactatttcccacaaaaggtaggagaaccctacacgcctatcttttatgtgttctat
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================
PromScan Matrix: RpoD-17	Strand: -	Score: 87	Start: 259	End: 288
..................................................................................................................................................................................................................................................................GTTGCAAATATAATTATTATTTTTTACAAT..........................................................................................................................................................................................................................................................................................................................................................................

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

tgactttttaacggaattctctttacgaagttaaacagaaagactctcactgcttcaccagtaggtttgttaaaaaatatctgcgatatagcctaccctaccaactttcttataccgaactaacgttatatatacattcgtcagacagtaataatcaagatgtttagaagttataaacatctaagaaatatacagaaactattaatgcaaaccataaaaaatatatcattctataacaaatatttaatttcctttctgattgtaaaaaataataattatatttgcaacaccactacataaaggttgattaatacttaaaagcatataccaaaggcagcaaaagggagtcagctgtcgtacctaaacaaaaaagtagctcccctatttaacaactataatctattggaaatatgaaaagaaagcacttacacgtaatcggtttcttgcttgcagcattattcctatctatgcctaccaaggctcaaacacaggaagatacttacaagagactgccattgaaccaacaaaaagcacccatgggaaatttacctccagaactaaaagggttggaatttgacgatttctatggtgcaaactatttcccacaaaaggtaggagaaccctacacgcctatcttttatgtgttctat
Predict TransTerm conf > 70================================================
TransTerm Strand: -	Conf: 70	HP_score: -4.0	Tail_Score: -5.00884	Start: 78	End: 88	Full_Region: tggtagggtaggcta tatc gca gata ttttttaacaaacct
.............................................................................tatcgcagata..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

Find igs database================================================
Query_seq: PI1601:PI1602|PI1601:PI1602:hypothetical protein:conserved hypothetical protein; possible internalin-related protein:->->:1530515..1531164 650
tgactttttaacggaattctctttacgaagttaaacagaaagactctcactgcttcaccagtaggtttgttaaaaaatatctgcgatatagcctaccctaccaactttcttataccgaactaacgttatatatacattcgtcagacagtaataatcaagatgtttagaagttataaacatctaagaaatatacagaaactattaatgcaaaccataaaaaatatatcattctataacaaatatttaatttcctttctgattgtaaaaaataataattatatttgcaacaccactacataaaggttgattaatacttaaaagcatataccaaaggcagcaaaagggagtcagctgtcgtacctaaacaaaaaagtagctcccctatttaacaactataatctattggaaatatgaaaagaaagcacttacacgtaatcggtttcttgcttgcagcattattcctatctatgcctaccaaggctcaaacacaggaagatacttacaagagactgccattgaaccaacaaaaagcacccatgggaaatttacctccagaactaaaagggttggaatttgacgatttctatggtgcaaactatttcccacaaaaggtaggagaaccctacacgcctatcttttatgtgttctat
Intra-Species Hit: Count: 1	Min: 1	Max: 650	Len: 650
Subject: pint_PI1601_PI1602|hypothetical protein:conserved hypothetical protein; possible internalin-related protein|POSITIVE:POSITIVE|[1530515,1531164]|650
HSP  1	e-value: 0.0	bit: 1289.0	Len: 650	Query Start:1	Query End:650	Subject Strand: POSITIVE	Subject Start: 1	Subject End: 650
tgactttttaacggaattctctttacgaagttaaacagaaagactctcactgcttcaccagtaggtttgttaaaaaatatctgcgatatagcctaccctaccaactttcttataccgaactaacgttatatatacattcgtcagacagtaataatcaagatgtttagaagttataaacatctaagaaatatacagaaactattaatgcaaaccataaaaaatatatcattctataacaaatatttaatttcctttctgattgtaaaaaataataattatatttgcaacaccactacataaaggttgattaatacttaaaagcatataccaaaggcagcaaaagggagtcagctgtcgtacctaaacaaaaaagtagctcccctatttaacaactataatctattggaaatatgaaaagaaagcacttacacgtaatcggtttcttgcttgcagcattattcctatctatgcctaccaaggctcaaacacaggaagatacttacaagagactgccattgaaccaacaaaaagcacccatgggaaatttacctccagaactaaaagggttggaatttgacgatttctatggtgcaaactatttcccacaaaaggtaggagaaccctacacgcctatcttttatgtgttctat
tgactttttaacggaattctctttacgaagttaaacagaaagactctcactgcttcaccagtaggtttgttaaaaaatatctgcgatatagcctaccctaccaactttcttataccgaactaacgttatatatacattcgtcagacagtaataatcaagatgtttagaagttataaacatctaagaaatatacagaaactattaatgcaaaccataaaaaatatatcattctataacaaatatttaatttcctttctgattgtaaaaaataataattatatttgcaacaccactacataaaggttgattaatacttaaaagcatataccaaaggcagcaaaagggagtcagctgtcgtacctaaacaaaaaagtagctcccctatttaacaactataatctattggaaatatgaaaagaaagcacttacacgtaatcggtttcttgcttgcagcattattcctatctatgcctaccaaggctcaaacacaggaagatacttacaagagactgccattgaaccaacaaaaagcacccatgggaaatttacctccagaactaaaagggttggaatttgacgatttctatggtgcaaactatttcccacaaaaggtaggagaaccctacacgcctatcttttatgtgttctat

Inter-species Hit: Count: 0

Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
UGACUUUUUAACGGAAUUCUCUUUACGAAGUUAAACAGAAAGACUCUCACUGCUUCACCAGUAGGUUUGUUAAAAAAUAUCUGCGAUAUAGCCUACCCUACCAACUUUCUUAUACCGAACUAACGUUAUAUAUACAUUCGUCAGACAGUAAUAAUCAAGAUGUUUAGAAGUUAUAAACAUCUAAGAAAUAUACAGAAACUAUUAAUGCAAACCAUAAAAAAUAUAUCAUUCUAUAACAAAUAUUUAAUUUCCUUUCUGAUUGUAAAAAAUAAUAAUUAUAUUUGCAACACCACUACAUAAAGGUUGAUUAAUACUUAAAAGCAUAUACCAAAGGCAGCAAAAGGGAGUCAGCUGUCGUACCUAAACAAAAAAGUAGCUCCCCUAUUUAACAACUAUAAUCUAUUGGAAAUAUGAAAAGAAAGCACUUACACGUAAUCGGUUUCUUGCUUGCAGCAUUAUUCCUAUCUAUGCCUACCAAGGCUCAAACACAGGAAGAUACUUACAAGAGACUGCCAUUGAACCAACAAAAAGCACCCAUGGGAAAUUUACCUCCAGAACUAAAAGGGUUGGAAUUUGACGAUUUCUAUGGUGCAAACUAUUUCCCACAAAAGGUAGGAGAACCCUACACGCCUAUCUUUUAUGUGUUCUAU
...(((((((................(((((.....(((.....)))....))))).(((((((((((((((((.......(((......((((................((((...(((....)))...)))).....((.....((((.(((((((((((((((.......))))))))).......................((((((.......((((((...............))))))...........(((((((........)))))))..))))))..................)))))).)))).....)).........)))).)))...((((((..(((...((......)).....))).))))))...))))))).....)))))))))).....))))))).........(((((((..((((((((((.....((.(((.(((((......((((....))))........)))))))).))..))))))))))..................(((((.(((((((..(((..(((((..(.....)..)))))...)))...))))))))))))...............(((((((((.(.........).))))))))))))))))..... (-120.90)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
AUAGAACACAUAAAAGAUAGGCGUGUAGGGUUCUCCUACCUUUUGUGGGAAAUAGUUUGCACCAUAGAAAUCGUCAAAUUCCAACCCUUUUAGUUCUGGAGGUAAAUUUCCCAUGGGUGCUUUUUGUUGGUUCAAUGGCAGUCUCUUGUAAGUAUCUUCCUGUGUUUGAGCCUUGGUAGGCAUAGAUAGGAAUAAUGCUGCAAGCAAGAAACCGAUUACGUGUAAGUGCUUUCUUUUCAUAUUUCCAAUAGAUUAUAGUUGUUAAAUAGGGGAGCUACUUUUUUGUUUAGGUACGACAGCUGACUCCCUUUUGCUGCCUUUGGUAUAUGCUUUUAAGUAUUAAUCAACCUUUAUGUAGUGGUGUUGCAAAUAUAAUUAUUAUUUUUUACAAUCAGAAAGGAAAUUAAAUAUUUGUUAUAGAAUGAUAUAUUUUUUAUGGUUUGCAUUAAUAGUUUCUGUAUAUUUCUUAGAUGUUUAUAACUUCUAAACAUCUUGAUUAUUACUGUCUGACGAAUGUAUAUAUAACGUUAGUUCGGUAUAAGAAAGUUGGUAGGGUAGGCUAUAUCGCAGAUAUUUUUUAACAAACCUACUGGUGAAGCAGUGAGAGUCUUUCUGUUUAACUUCGUAAAGAGAAUUCCGUUAAAAAGUCA
.......(((((((....(((((((.((((...((((((.....))))))...((((.((.((((.(((.(((.((((.....((((.........(((.((......))))).))))....)))).)))))).))))..(((.((((((.((((.(((((((.(....((((....))))..).)))))))..))))))))))......(((....(((...(((((((..(((......((..((((........))))..))..)))..))).))))...)))...)))..))).)).))))))))..))).))))(((((..(((((....)))))..)))))..))))))).(((((..(((((((((((.(((((((((..((((....................))))...)))))))))......)))).)))))))...(((((((((.(((.(((((((((((((((.......))))))))........(((((.((((((.............))))))..))))))))))))....))).)).))))))))))))....((((((((((...(.(((((......))))).).....((((.((((......)))).))))....)))))))))).. (-146.77)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
315	476	431	121	56	pint:PI0288|5end_hypothetical_protein_(possible_ISPg3-related_transposase)_272272..272502_POSITIVE
315	472	431	217	178	pint:PI0026|5end_two-component_system_response_regulator_29756..29986_POSITIVE
310	123	81	128	80	pint:PI1727|5end__ATP-dependent_Clp_protease,_ATP-binding_subunit_1645680..1645910_POSITIVE
304	630	588	169	128	pint:PI2112|5end_phosphopantetheine_adenylyltransferase_2063194..2063424_POSITIVE
294	67	22	63	17	pint:PI1005|5end_hypothetical_protein_926201..926431_POSITIVE
294	125	83	189	145	pint:PI0668|5end_peptidyl-prolyl_cis-trans_isomerase_SlyD,_FKBP-type_(peptidylprolyl_isomerase)_610216..610446_POSITIVE
294	125	83	86	42	pint:PI0667|5end_hypothetical_protein_610113..610343_POSITIVE
294	576	531	86	35	pint:PI0384|5end_probable_radical_SAM_domain_protein_352884..353114_POSITIVE
288	100	52	187	127	pint:PI0568|5end_hypothetical_protein_512950..513180_POSITIVE
288	134	92	208	156	pint:PI0326|5end_ISPg3-related_transposase_306792..307022_POSITIVE
286	480	431	218	180	pint:PI0422|5end_conserved_hypothetical_protein_387406..387636_POSITIVE
285	475	435	166	128	pint:PI0932|5end_conserved_hypothetical_protein;_possible_hemin_receptor_863854..864084_POSITIVE
284	128	82	198	138	pint:PI1261|5end_ISPg3-related_transposase,_N-terminal_region_1183347..1183577_POSITIVE
283	475	435	74	32	pint:PI1364|5end_dipeptidyl_peptidase_IV_1281862..1282092_POSITIVE
283	481	445	101	61	pint:PI0945|5end_sodium:solute_symporter_family_protein_876249..876479_POSITIVE
280	104	61	139	91	pint:PI1206|5end_ATP-dependent_DNA_helicase,_UvrD/PcrA/Rep_family_1124698..1124928_POSITIVE
280	470	422	50	1	pint:PI0832|5end_sigma-54-dependent_transcriptional_regulator_768834..769064_POSITIVE
279	630	584	170	107	pint:PI0273|5end_hypothetical_protein_262956..263186_POSITIVE
279	630	584	70	7	pint:PI0274|5end_conserved_hypothetical_protein_262856..263086_POSITIVE
277	377	331	126	80	pint:PI1618|5end_hypothetical_protein_1542670..1542900_POSITIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
413	57	14	44	1	pint:PI1881|3end_ISPg3-related_transposase_1824530..1824680_POSITIVE
380	57	11	59	13	pint:PI1379|3end_hypothetical_protein_1302292..1302442_POSITIVE
364	468	422	128	80	pint:PI0019|3end_conserved_hypothetical_protein_24454..24604_POSITIVE
358	140	91	51	3	pint:PI1499|3end_hypothetical_protein_1420180..1420330_POSITIVE
315	476	431	121	56	pint:PI0287|3end_ISPg3-related_transposase_272352..272502_POSITIVE
298	34	3	45	14	pint:PI0010|3end_conserved_hypothetical_protein_11679..11829_POSITIVE
297	126	100	76	50	pint:PI2178|3end_1-hydroxy-2-methyl-2-(E)-butenyl_4-diphosphate_synthase,_GcpE_2119730..2119880_POSITIVE
294	125	83	64	20	pint:PI0666|3end_chorismate_synthase_610171..610321_POSITIVE
288	134	92	80	28	pint:PI0325|3end_ISPg3-related_transposase_fragment_306744..306894_POSITIVE
283	475	435	54	12	pint:PI1363|3end_hypothetical_protein_1281922..1282072_POSITIVE
283	356	321	148	103	pint:PI0811|3end_protease/hemagglutinin_PrtT,_streptopain_family_749937..750087_POSITIVE
279	630	584	77	14	pint:PI0272|3end_conserved_hypothetical_protein_262943..263093_POSITIVE
274	487	444	124	74	pint:PI0778|3end_hypothetical_protein_714885..715035_POSITIVE
274	648	602	69	24	pint:PI0546|3end_hypothetical_protein_498238..498388_POSITIVE
272	470	422	142	96	pint:PI1076|3end_hypothetical_protein_999065..999215_POSITIVE
271	128	92	43	1	pint:PI1260|3end_IS1001-related_transposase_1183272..1183422_POSITIVE
270	648	610	79	37	pint:PI1676|3end_phosphatidate_cytidylyltransferase_1591773..1591923_POSITIVE
265	378	334	138	97	pint:PI0615|3end_hydrolase,_haloacid_dehalogenase-like_family_565386..565536_POSITIVE
263	352	317	148	108	pint:PI1543|3end_hypothetical_protein_1463281..1463431_POSITIVE
263	534	491	59	1	pint:PI0007|3end_hypothetical_protein_7300..7450_POSITIVE