Origin IGS: ttccaatctgtctatttattcaacttatcttcttaaaaccacttcattgctttgcaactactcgttttccgagattctaatttcgatacaaatatacaaaaaacatatataaaaaatagaatattgcaagatataataaacaccgcctacaattcttttccaatactttttaggaggaatattttctttttatcgcacgactaaaatactgaaaaacacttctgcttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaacatattttataacacactgatagataaacagttagataaaagacgttgttatgaaaaatatttacacccttattgtctacttttcagctaattttcgattcgcaaaaccgtgtattaggatattgcgaatcgaatacttaggaagtggaaagtcaacta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tagttgactttccacttcctaagtattcgattcgcaatatcctaatacacggttttgcgaatcgaaaattagctgaaaagtagacaataagggtgtaaatatttttcataacaacgtcttttatctaactgtttatctatcagtgtgttataaaatatgttgttttgcgttccaaaagcggctgttttgcaaggtaaaagagccgcttttggcgtgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatttttacaaaagcagaagtgtttttcagtattttagtcgtgcgataaaaagaaaatattcctcctaaaaagtattggaaaagaattgtaggcggtgtttattatatcttgcaatattctattttttatatatgttttttgtatatttgtatcgaaattagaatctcggaaaacgagtagttgcaaagcaatgaagtggttttaagaagataagttgaataaatagacagattggaa Mask Tandem Repeat Region ================================================ ttccaatctgtctatttattcaacttatcttcttaaaaccacttcattgctttgcaactactcgttttccgagattctaatttcgatacaaatatacaaaaaacatatataaaaaatagaatattgcaagatataataaacaccgcctacaattcttttccaatactttttaggaggaatattttctttttatcgcacgactaaaatactgaaaaacacttctgcttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaacatattttataacacactgatagataaacagttagataaaagacgttgttatgaaaaatatttacacccttattgtctacttttcagctaattttcgattcgcaaaaccgtgtattaggatattgcgaatcgaatacttaggaagtggaaagtcaacta Find is-nt database================================================ Query_seq: PI1588:PI1589|PI1588:PI1589:DNA polymerase III, epsilon chain:conserved hypothetical protein:->->:1516991..1517497 507 ttccaatctgtctatttattcaacttatcttcttaaaaccacttcattgctttgcaactactcgttttccgagattctaatttcgatacaaatatacaaaaaacatatataaaaaatagaatattgcaagatataataaacaccgcctacaattcttttccaatactttttaggaggaatattttctttttatcgcacgactaaaatactgaaaaacacttctgcttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaacatattttataacacactgatagataaacagttagataaaagacgttgttatgaaaaatatttacacccttattgtctacttttcagctaattttcgattcgcaaaaccgtgtattaggatattgcgaatcgaatacttaggaagtggaaagtcaacta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1588:PI1589|PI1588:PI1589:DNA polymerase III, epsilon chain:conserved hypothetical protein:->->:1516991..1517497 507 ttccaatctgtctatttattcaacttatcttcttaaaaccacttcattgctttgcaactactcgttttccgagattctaatttcgatacaaatatacaaaaaacatatataaaaaatagaatattgcaagatataataaacaccgcctacaattcttttccaatactttttaggaggaatattttctttttatcgcacgactaaaatactgaaaaacacttctgcttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaacatattttataacacactgatagataaacagttagataaaagacgttgttatgaaaaatatttacacccttattgtctacttttcagctaattttcgattcgcaaaaccgtgtattaggatattgcgaatcgaatacttaggaagtggaaagtcaacta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1588:PI1589|PI1588:PI1589:DNA polymerase III, epsilon chain:conserved hypothetical protein:->->:1516991..1517497 507 ttccaatctgtctatttattcaacttatcttcttaaaaccacttcattgctttgcaactactcgttttccgagattctaatttcgatacaaatatacaaaaaacatatataaaaaatagaatattgcaagatataataaacaccgcctacaattcttttccaatactttttaggaggaatattttctttttatcgcacgactaaaatactgaaaaacacttctgcttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaacatattttataacacactgatagataaacagttagataaaagacgttgttatgaaaaatatttacacccttattgtctacttttcagctaattttcgattcgcaaaaccgtgtattaggatattgcgaatcgaatacttaggaagtggaaagtcaacta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ttccaatctgtctatttattcaacttatcttcttaaaaccacttcattgctttgcaactactcgttttccgagattctaatttcgatacaaatatacaaaaaacatatataaaaaatagaatattgcaagatataataaacaccgcctacaattcttttccaatactttttaggaggaatattttctttttatcgcacgactaaaatactgaaaaacacttctgcttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaacatattttataacacactgatagataaacagttagataaaagacgttgttatgaaaaatatttacacccttattgtctacttttcagctaattttcgattcgcaaaaccgtgtattaggatattgcgaatcgaatacttaggaagtggaaagtcaacta Predict ORF larger than 30AA ================================================ Protein_Len: 34 Strand: + Start: 8 End: 109 ....... M S I Y S T Y L L K T T S L L C N Y S F S E I L I S I Q I Y K K H I .............................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 52 Strand: + Start: 46 End: 201 ............................................. M A L Q L L V F R D S N F D T N I Q K T Y I K N R I L Q D I I N T A Y N S F P I L F R R N I F F L S H D .................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 152 End: 436 ....................................................................................................................................................... M L F Q Y F L G G I F S F Y R T T K I L K N T S A F V K I I P L K S D N C A L T L R K R R F C T P K A A L L P C K T A A ....................................................................... Protein_Len: 41 Strand: + Start: 384 End: 506 ............................................................................................................................................................................................................................................................................................................................................................................................... M K D V V M K N I Y T L I V Y F S A N F R F A K P C I R I L R I E Y L G S G K S T . Protein_Len: 60 Strand: - Start: 204 End: 407 ........................................................................................................................................................................................................... Q L F L E T L F H C S R K S T A F A Y T K C A L L P E K V K C F L R K Q F A F C C I K Y C V S L Y V T L Y F V N N H F M .................................................................................................... Protein_Len: 53 Strand: - Start: 193 End: 351 ................................................................................................................................................................................................ R V V L I S F F V E A K T F I I G N F L S L Q A K V N R F R L N Q V G F A A R K G Q L V A A K P V C F L M ............................................................................................................................................................ Protein_Len: 40 Strand: - Start: 61 End: 180 ............................................................ E N E S I R I E I C I Y L F C I Y F I S Y Q L I Y Y V G G V I R K W Y K K P P M ....................................................................................................................................................................................................................................................................................................................................... Protein_Len: 36 Strand: - Start: 36 End: 143 ................................... F W K M A K C S S T K R S E L K S V F I C F V Y I F F L I N C S I I F M ............................................................................................................................................................................................................................................................................................................................................................................ ttccaatctgtctatttattcaacttatcttcttaaaaccacttcattgctttgcaactactcgttttccgagattctaatttcgatacaaatatacaaaaaacatatataaaaaatagaatattgcaagatataataaacaccgcctacaattcttttccaatactttttaggaggaatattttctttttatcgcacgactaaaatactgaaaaacacttctgcttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaacatattttataacacactgatagataaacagttagataaaagacgttgttatgaaaaatatttacacccttattgtctacttttcagctaattttcgattcgcaaaaccgtgtattaggatattgcgaatcgaatacttaggaagtggaaagtcaacta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ttccaatctgtctatttattcaacttatcttcttaaaaccacttcattgctttgcaactactcgttttccgagattctaatttcgatacaaatatacaaaaaacatatataaaaaatagaatattgcaagatataataaacaccgcctacaattcttttccaatactttttaggaggaatattttctttttatcgcacgactaaaatactgaaaaacacttctgcttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaacatattttataacacactgatagataaacagttagataaaagacgttgttatgaaaaatatttacacccttattgtctacttttcagctaattttcgattcgcaaaaccgtgtattaggatattgcgaatcgaatacttaggaagtggaaagtcaacta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 56 HP_score: -4.7 Tail_Score: -3.54424 Start: 280 End: 330 Full_Region: ttttgcgttccaaaa gcggctgttttgcaaggtaaaag agccg cttttggcgtgcaaaacctacgc tttcgcaacgtcaaa .......................................................................................................................................................................................................................................................................................gcggctgttttgcaaggtaaaagagccgcttttggcgtgcaaaacctacgc................................................................................................................................................................................. TransTerm Strand: + Conf: 91 HP_score: -10.3 Tail_Score: -4.07568 Start: 302 End: 330 Full_Region: TTTTGCACGCCAAAA GCGGCTCTTTTAC CTT GCAAAACAGCCGC TTTTGGAACGCAAAA .............................................................................................................................................................................................................................................................................................................GCGGCTCTTTTACCTTGCAAAACAGCCGC................................................................................................................................................................................. TransTerm Strand: - Conf: 100 HP_score: -12.5 Tail_Score: -4.13767 Start: 302 End: 330 Full_Region: ttttgcgttccaaaa gcggctgttttgc aag gtaaaagagccgc ttttggcgtgcaaaa .............................................................................................................................................................................................................................................................................................................gcggctgttttgcaaggtaaaagagccgc................................................................................................................................................................................. TransTerm Strand: - Conf: 70 HP_score: -8.0 Tail_Score: -3.05816 Start: 440 End: 484 Full_Region: tttccacttcctaag tattcgattcgcaatatcct aatac acggttttgcgaatcgaaaa ttagctgaaaagtag .......................................................................................................................................................................................................................................................................................................................................................................................................................................................tattcgattcgcaatatcctaatacacggttttgcgaatcgaaaa....................... TransTerm Strand: + Conf: 72 HP_score: -9.1 Tail_Score: -2.71731 Start: 442 End: 482 Full_Region: ACTTTTCAGCTAATT TTCGATTCGCAAAACCGTG TAT TAGGATATTGCGAATCGAA TACTTAGGAAGTGGA .........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATTCGCAAAACCGTGTATTAGGATATTGCGAATCGAA......................... Find igs database================================================ Query_seq: PI1588:PI1589|PI1588:PI1589:DNA polymerase III, epsilon chain:conserved hypothetical protein:->->:1516991..1517497 507 ttccaatctgtctatttattcaacttatcttcttaaaaccacttcattgctttgcaactactcgttttccgagattctaatttcgatacaaatatacaaaaaacatatataaaaaatagaatattgcaagatataataaacaccgcctacaattcttttccaatactttttaggaggaatattttctttttatcgcacgactaaaatactgaaaaacacttctgcttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaacatattttataacacactgatagataaacagttagataaaagacgttgttatgaaaaatatttacacccttattgtctacttttcagctaattttcgattcgcaaaaccgtgtattaggatattgcgaatcgaatacttaggaagtggaaagtcaacta Intra-Species Hit: Count: 38 Min: 1 Max: 507 Len: 507 Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 0.0 bit: 728.0 Len: 367 Query Start:141 Query End:507 Subject Strand: POSITIVE Subject Start: 141 Subject End: 507 ............................................................................................................................................caccgcctacaattcttttccaatactttttaggaggaatattttctttttatcgcacgactaaaatactgaaaaacacttctgcttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaacatattttataacacactgatagataaacagttagataaaagacgttgttatgaaaaatatttacacccttattgtctacttttcagctaattttcgattcgcaaaaccgtgtattaggatattgcgaatcgaatacttaggaagtggaaagtcaacta ............................................................................................................................................caccgcctacaattcttttccaatactttttaggaggaatattttctttttatcgcacgactaaaatactgaaaaacacttctgcttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaacatattttataacacactgatagataaacagttagataaaagacgttgttatgaaaaatatttacacccttattgtctacttttcagctaattttcgattcgcaaaaccgtgtattaggatattgcgaatcgaatacttaggaagtggaaagtcaacta HSP 2 e-value: 1.0E-40 bit: 168.0 Len: 85 Query Start:1 Query End:85 Subject Strand: POSITIVE Subject Start: 1 Subject End: 85 ttccaatctgtctatttattcaacttatcttcttaaaaccacttcattgctttgcaactactcgttttccgagattctaatttcg...................................................................................................................................................................................................................................................................................................................................................................................................................................... ttccaatctgtctatttattcaacttatcttcttaaaaccacttcattgctttgcaactactcgttttccgagattctaatttcg...................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 4.0E-34 bit: 147.0 Len: 122 Query Start:227 Query End:348 Subject Strand: NEGATIVE Subject Start: 187 Subject End: 308 ..................................................................................................................................................................................................................................tttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... ..................................................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaa............................................................................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 48 Query Start:277 Query End:324 Subject Strand: POSITIVE Subject Start: 202 Subject End: 249 ....................................................................................................................................................................................................................................................................................aaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaac....................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................aaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaac....................................................................................................................................................................................... Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 4.0E-31 bit: 137.0 Len: 145 Query Start:226 Query End:370 Subject Strand: NEGATIVE Subject Start: 97 Subject End: 241 .................................................................................................................................................................................................................................ttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaacatattttataacacactgata......................................................................................................................................... .................................................................................................................................................................................................................................ttttgtaaaaataattccgttaaaaagcgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgata......................................................................................................................................... Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 2.0E-27 bit: 125.0 Len: 123 Query Start:226 Query End:348 Subject Strand: POSITIVE Subject Start: 50 Subject End: 172 .................................................................................................................................................................................................................................ttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... .................................................................................................................................................................................................................................ttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 3.0E-26 bit: 121.0 Len: 189 Query Start:227 Query End:415 Subject Strand: POSITIVE Subject Start: 60 Subject End: 248 ..................................................................................................................................................................................................................................tttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaacatattttataacacactgatagataaacagttagataaaagacgttgttatgaaaaatatttacac............................................................................................ ..................................................................................................................................................................................................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttacac............................................................................................ Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 4.0E-25 bit: 117.0 Len: 123 Query Start:226 Query End:348 Subject Strand: NEGATIVE Subject Start: 313 Subject End: 435 .................................................................................................................................................................................................................................ttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... .................................................................................................................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacgttgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaa............................................................................................................................................................... Subject: pint_PI1937_PI1938|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1891147,1891993]|847 HSP 1 e-value: 2.0E-24 bit: 115.0 Len: 118 Query Start:231 Query End:348 Subject Strand: POSITIVE Subject Start: 507 Subject End: 624 ......................................................................................................................................................................................................................................taaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... ......................................................................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaa............................................................................................................................................................... Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 6.0E-24 bit: 113.0 Len: 121 Query Start:228 Query End:348 Subject Strand: POSITIVE Subject Start: 170 Subject End: 290 ...................................................................................................................................................................................................................................ttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... ...................................................................................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 1.0E-22 bit: 109.0 Len: 135 Query Start:227 Query End:361 Subject Strand: POSITIVE Subject Start: 200 Subject End: 334 ..................................................................................................................................................................................................................................tttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaacatattttataac.................................................................................................................................................. ..................................................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataac.................................................................................................................................................. Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 4.0E-22 bit: 107.0 Len: 146 Query Start:203 Query End:348 Subject Strand: NEGATIVE Subject Start: 355 Subject End: 500 ..........................................................................................................................................................................................................aaaatactgaaaaacacttctgcttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... ..........................................................................................................................................................................................................aaaatactcaaaaacacggttgattttgtaaagataacattgttaaaaagtgataactgcgctttgacattgcgaaagcgtaggttttgcgatgcaaaagcgccacttttaccgtgcaaaacctacgcttttggaatgcaaaacaa............................................................................................................................................................... Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 4.0E-22 bit: 107.0 Len: 122 Query Start:227 Query End:348 Subject Strand: POSITIVE Subject Start: 149 Subject End: 270 ..................................................................................................................................................................................................................................tttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... ..................................................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 6.0E-21 bit: 103.0 Len: 140 Query Start:209 Query End:348 Subject Strand: NEGATIVE Subject Start: 160 Subject End: 299 ................................................................................................................................................................................................................ctgaaaaacacttctgcttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... ................................................................................................................................................................................................................ctgaaaaatagttctgtttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgtaaaacaa............................................................................................................................................................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 6.0E-21 bit: 103.0 Len: 144 Query Start:226 Query End:369 Subject Strand: NEGATIVE Subject Start: 178 Subject End: 321 .................................................................................................................................................................................................................................ttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaacatattttataacacactgat.......................................................................................................................................... .................................................................................................................................................................................................................................ttttgtaaagataattcccttaaaaaaggataactgcgctttggcattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaacacgttttataacacgctgat.......................................................................................................................................... Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 123 Query Start:226 Query End:348 Subject Strand: POSITIVE Subject Start: 111 Subject End: 233 .................................................................................................................................................................................................................................ttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... .................................................................................................................................................................................................................................ttttgtaaagataattctgttaaaaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 123 Query Start:226 Query End:348 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 228 .................................................................................................................................................................................................................................ttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... .................................................................................................................................................................................................................................ttttgtaaagataattctgttaaaaactgataactgcgttttgacattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaa............................................................................................................................................................... Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 119 Query Start:227 Query End:345 Subject Strand: POSITIVE Subject Start: 257 Subject End: 375 ..................................................................................................................................................................................................................................tttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaa.................................................................................................................................................................. ..................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa.................................................................................................................................................................. Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 143 Query Start:227 Query End:369 Subject Strand: NEGATIVE Subject Start: 242 Subject End: 384 ..................................................................................................................................................................................................................................tttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaacatattttataacacactgat.......................................................................................................................................... ..................................................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccacttttggaacgcaaaacaataggttttgtaacacactgat.......................................................................................................................................... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 123 Query Start:226 Query End:348 Subject Strand: NEGATIVE Subject Start: 105 Subject End: 227 .................................................................................................................................................................................................................................ttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... .................................................................................................................................................................................................................................ttttgtaaagataattctgttaaaaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 123 Query Start:226 Query End:348 Subject Strand: POSITIVE Subject Start: 166 Subject End: 288 .................................................................................................................................................................................................................................ttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... .................................................................................................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgttttgacattgcgaaagcggctgttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 9.0E-20 bit: 99.6 Len: 122 Query Start:227 Query End:348 Subject Strand: POSITIVE Subject Start: 310 Subject End: 431 ..................................................................................................................................................................................................................................tttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... ..................................................................................................................................................................................................................................tttgtaaagataatttctttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 104 Query Start:245 Query End:348 Subject Strand: POSITIVE Subject Start: 120 Subject End: 223 ....................................................................................................................................................................................................................................................ttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... ....................................................................................................................................................................................................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaa............................................................................................................................................................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 6.0E-18 bit: 93.7 Len: 123 Query Start:226 Query End:348 Subject Strand: POSITIVE Subject Start: 146 Subject End: 268 .................................................................................................................................................................................................................................ttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... .................................................................................................................................................................................................................................ttttgtaaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 122 Query Start:227 Query End:348 Subject Strand: POSITIVE Subject Start: 480 Subject End: 601 ..................................................................................................................................................................................................................................tttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... ..................................................................................................................................................................................................................................tttgtaaagataattctgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaa............................................................................................................................................................... Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 123 Query Start:226 Query End:348 Subject Strand: POSITIVE Subject Start: 141 Subject End: 263 .................................................................................................................................................................................................................................ttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... .................................................................................................................................................................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaa............................................................................................................................................................... HSP 2 e-value: 1.0E-9 bit: 65.9 Len: 57 Query Start:277 Query End:333 Subject Strand: NEGATIVE Subject Start: 192 Subject End: 248 ....................................................................................................................................................................................................................................................................................aaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttt.............................................................................................................................................................................. ....................................................................................................................................................................................................................................................................................aaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaagagccgcttt.............................................................................................................................................................................. Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 123 Query Start:226 Query End:348 Subject Strand: NEGATIVE Subject Start: 187 Subject End: 309 .................................................................................................................................................................................................................................ttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... .................................................................................................................................................................................................................................ttttgtaaagataattttattaaaaagtggcaattgcgttttgacattgcaaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcgaaacaa............................................................................................................................................................... HSP 2 e-value: 5.0E-9 bit: 63.9 Len: 48 Query Start:277 Query End:324 Subject Strand: POSITIVE Subject Start: 202 Subject End: 249 ....................................................................................................................................................................................................................................................................................aaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaac....................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................aaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaac....................................................................................................................................................................................... Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 57 Query Start:226 Query End:282 Subject Strand: NEGATIVE Subject Start: 169 Subject End: 225 .................................................................................................................................................................................................................................ttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcg................................................................................................................................................................................................................................. .................................................................................................................................................................................................................................ttttgtaaagataattctgttaaaaactgataactgcgctttgacgttgcgaaagcg................................................................................................................................................................................................................................. HSP 2 e-value: 1.0E-9 bit: 65.9 Len: 41 Query Start:308 Query End:348 Subject Strand: NEGATIVE Subject Start: 103 Subject End: 143 ...................................................................................................................................................................................................................................................................................................................cttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................cttttaccgtgcaaaagagccgcttttggaacgcaaaacaa............................................................................................................................................................... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 57 Query Start:226 Query End:282 Subject Strand: POSITIVE Subject Start: 191 Subject End: 247 .................................................................................................................................................................................................................................ttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcg................................................................................................................................................................................................................................. .................................................................................................................................................................................................................................ttttgtaaagataatttcgttaaaaagtgataactgcactttgacgttgcgaaagcg................................................................................................................................................................................................................................. HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 57 Query Start:277 Query End:333 Subject Strand: NEGATIVE Subject Start: 242 Subject End: 298 ....................................................................................................................................................................................................................................................................................aaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttt.............................................................................................................................................................................. ....................................................................................................................................................................................................................................................................................aaagcgtaggttttgcacggtaaaagcggctgttttgcatcgtaaaacagccgcttt.............................................................................................................................................................................. Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 9.0E-14 bit: 79.8 Len: 52 Query Start:229 Query End:280 Subject Strand: POSITIVE Subject Start: 190 Subject End: 241 ....................................................................................................................................................................................................................................tgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaag................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaag................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 57 Query Start:277 Query End:333 Subject Strand: NEGATIVE Subject Start: 238 Subject End: 294 ....................................................................................................................................................................................................................................................................................aaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttt.............................................................................................................................................................................. ....................................................................................................................................................................................................................................................................................aaagcgtaggttttacacgataaaagcggctgttttgcgttgcaaaacagccacttt.............................................................................................................................................................................. Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 143 Query Start:227 Query End:369 Subject Strand: POSITIVE Subject Start: 215 Subject End: 357 ..................................................................................................................................................................................................................................tttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaacatattttataacacactgat.......................................................................................................................................... ..................................................................................................................................................................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgat.......................................................................................................................................... Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 123 Query Start:226 Query End:348 Subject Strand: NEGATIVE Subject Start: 705 Subject End: 827 .................................................................................................................................................................................................................................ttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... .................................................................................................................................................................................................................................ttttgtaaaaataattctgttaaaaagtgataactgtactttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatacaaaacaa............................................................................................................................................................... Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 123 Query Start:226 Query End:348 Subject Strand: POSITIVE Subject Start: 114 Subject End: 236 .................................................................................................................................................................................................................................ttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... .................................................................................................................................................................................................................................ttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaa............................................................................................................................................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 2.0E-11 bit: 71.9 Len: 136 Query Start:213 Query End:348 Subject Strand: POSITIVE Subject Start: 78 Subject End: 213 ....................................................................................................................................................................................................................aaaacacttctgcttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... ....................................................................................................................................................................................................................aaaacacctttgcttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaa............................................................................................................................................................... Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 8.0E-11 bit: 69.9 Len: 123 Query Start:226 Query End:348 Subject Strand: POSITIVE Subject Start: 144 Subject End: 266 .................................................................................................................................................................................................................................ttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... .................................................................................................................................................................................................................................ttttgtaaagataattcgttgaaaaaatgataatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaa............................................................................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:277 Query End:312 Subject Strand: NEGATIVE Subject Start: 216 Subject End: 251 ....................................................................................................................................................................................................................................................................................aaagcgtaggttttgcacgccaaaagcggctctttt................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................aaagcgtaggttttgcacggtaaaagcggctctttt................................................................................................................................................................................................... Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 8.0E-11 bit: 69.9 Len: 123 Query Start:226 Query End:348 Subject Strand: POSITIVE Subject Start: 185 Subject End: 307 .................................................................................................................................................................................................................................ttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... .................................................................................................................................................................................................................................ttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaa............................................................................................................................................................... Subject: pint_PI1728_PI1729|ATP-dependent Clp protease, proteolytic subunit:FKBP-type peptidyl-prolyl cis-trans isomerase, trigger factor|POSITIVE:POSITIVE|[1647719,1648555]|837 HSP 1 e-value: 3.0E-10 bit: 67.9 Len: 106 Query Start:265 Query End:370 Subject Strand: NEGATIVE Subject Start: 402 Subject End: 507 ........................................................................................................................................................................................................................................................................tttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaacatattttataacacactgata......................................................................................................................................... ........................................................................................................................................................................................................................................................................tttgacgttgcaaaagcgtaggttttgcaaggcaaaagagccgcttttaccgtgcaaaagcggctcttttacaatgcgaaacaataggttttataacacactgata......................................................................................................................................... Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 1.0E-9 bit: 65.9 Len: 57 Query Start:277 Query End:333 Subject Strand: NEGATIVE Subject Start: 130 Subject End: 186 ....................................................................................................................................................................................................................................................................................aaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttt.............................................................................................................................................................................. ....................................................................................................................................................................................................................................................................................aaagcgtaggttttacacggtaaaagcggctcttttgcatcgcaaaacagccgcttt.............................................................................................................................................................................. HSP 2 e-value: 8.0E-8 bit: 60.0 Len: 126 Query Start:223 Query End:348 Subject Strand: POSITIVE Subject Start: 76 Subject End: 201 ..............................................................................................................................................................................................................................tgcttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... ..............................................................................................................................................................................................................................tgcttttgtaaagataatttcgttgaaaagtggtaattgcgctttggcattgcgaaagcggctgttttgcgatgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaa............................................................................................................................................................... Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 2.0E-8 bit: 61.9 Len: 123 Query Start:226 Query End:348 Subject Strand: NEGATIVE Subject Start: 419 Subject End: 541 .................................................................................................................................................................................................................................ttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................... .................................................................................................................................................................................................................................ttttgtaaagataattacattgaaaattgataatttcgttttgacgttgcgaaagcggctgttttgcgaggtaaaacctacgcttttgccgtgcaaaacagccgcttttggaatgcaaaacaa............................................................................................................................................................... Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 8.0E-8 bit: 60.0 Len: 110 Query Start:265 Query End:374 Subject Strand: NEGATIVE Subject Start: 156 Subject End: 265 ........................................................................................................................................................................................................................................................................tttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaacatattttataacacactgatagata..................................................................................................................................... ........................................................................................................................................................................................................................................................................tttgacgttgcgaaagcgtatgttttgcgatgcaaaagagccgcttttaccgtgcaaaacctacgcttttacaatgcaaaacaataggttttataacacgctgacagata..................................................................................................................................... HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 49 Query Start:277 Query End:325 Subject Strand: POSITIVE Subject Start: 197 Subject End: 245 ....................................................................................................................................................................................................................................................................................aaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaaca...................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................aaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaaca...................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUCCAAUCUGUCUAUUUAUUCAACUUAUCUUCUUAAAACCACUUCAUUGCUUUGCAACUACUCGUUUUCCGAGAUUCUAAUUUCGAUACAAAUAUACAAAAAACAUAUAUAAAAAAUAGAAUAUUGCAAGAUAUAAUAAACACCGCCUACAAUUCUUUUCCAAUACUUUUUAGGAGGAAUAUUUUCUUUUUAUCGCACGACUAAAAUACUGAAAAACACUUCUGCUUUUGUAAAAAUAAUUCCGUUAAAAAGUGACAACUGCGCUUUGACGUUGCGAAAGCGUAGGUUUUGCACGCCAAAAGCGGCUCUUUUACCUUGCAAAACAGCCGCUUUUGGAACGCAAAACAACAUAUUUUAUAACACACUGAUAGAUAAACAGUUAGAUAAAAGACGUUGUUAUGAAAAAUAUUUACACCCUUAUUGUCUACUUUUCAGCUAAUUUUCGAUUCGCAAAACCGUGUAUUAGGAUAUUGCGAAUCGAAUACUUAGGAAGUGGAAAGUCAACUA ...((((..((((.(((((..(((((((((((...............(((.((((((...((((.....)))).(((((.(((..(((...................)))..))).)))))..)))))).........................................(((((((((....)))))))))..)))....(((((((.((............((((((((((.........((((((..((((.(....)))))))))))))))))))))....(((((((...((((((((((((.((((.......)))).))))))))))))...)))))))..))))))))).........)).)))))...))))..)))))))))))))...........................((((((((....((((..((((((((((((..((........))...))))))))))))...)))))))))))).......... (-111.21) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGUUGACUUUCCACUUCCUAAGUAUUCGAUUCGCAAUAUCCUAAUACACGGUUUUGCGAAUCGAAAAUUAGCUGAAAAGUAGACAAUAAGGGUGUAAAUAUUUUUCAUAACAACGUCUUUUAUCUAACUGUUUAUCUAUCAGUGUGUUAUAAAAUAUGUUGUUUUGCGUUCCAAAAGCGGCUGUUUUGCAAGGUAAAAGAGCCGCUUUUGGCGUGCAAAACCUACGCUUUCGCAACGUCAAAGCGCAGUUGUCACUUUUUAACGGAAUUAUUUUUACAAAAGCAGAAGUGUUUUUCAGUAUUUUAGUCGUGCGAUAAAAAGAAAAUAUUCCUCCUAAAAAGUAUUGGAAAAGAAUUGUAGGCGGUGUUUAUUAUAUCUUGCAAUAUUCUAUUUUUUAUAUAUGUUUUUUGUAUAUUUGUAUCGAAAUUAGAAUCUCGGAAAACGAGUAGUUGCAAAGCAAUGAAGUGGUUUUAAGAAGAUAAGUUGAAUAAAUAGACAGAUUGGAA ...(..((((.(((((((.......((((((((((((...((........))..)))))))))))).....((((((((((.((((((..((((...............((((((((.((((((...((((.........)))).....)))))).))))))))(((((..((((((((((((.((((((...)))))).))))))))))))..))))).)))).((((((.((...)).))))))..))))))))))))).....................((((...((((((((((.((((((.((((((((.....(((((((((......((((((((...((((....((((((((..(((.....)))..)))))))).))))))))))))...)))))))))......))))).)))...)))))))).)))))))).....))))..)))...)))))))............))))..)................... (-136.42) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 795 330 281 56 7 pint:PI1666|5end_conserved_hypothetical_protein_1579231..1579461_POSITIVE 736 280 231 154 105 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 726 300 251 226 177 pint:PI1949|5end_aminotransferase,_class_V_1903218..1903448_POSITIVE 726 300 251 92 43 pint:PI1948|5end_hypothetical_protein_1903084..1903314_POSITIVE 691 296 251 166 120 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 667 330 281 63 14 pint:PI0659|5end_hypothetical_protein_603203..603433_POSITIVE 667 330 281 205 156 pint:PI0196|5end_hypothetical_protein_188435..188665_POSITIVE 664 320 271 195 144 pint:PI1870|5end_hypothetical_protein_1815302..1815532_POSITIVE 663 280 231 149 100 pint:PI2111|5end_conserved_hypothetical_protein_2062771..2063001_POSITIVE 661 290 241 191 145 pint:PI2003|5end_hypothetical_protein_1960823..1961053_POSITIVE 658 290 241 228 179 pint:PI0552|5end_hypothetical_protein_502716..502946_POSITIVE 650 320 272 67 14 pint:PI1702|5end_hypothetical_protein_1620587..1620817_POSITIVE 648 348 302 63 6 pint:PI0061|5end_hypothetical_protein_60500..60730_POSITIVE 648 348 302 63 6 pint:PI0004|5end_hypothetical_protein_6199..6429_POSITIVE 646 330 281 77 28 pint:PI0037|5end_hypothetical_protein_39354..39584_POSITIVE 641 348 308 91 51 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 641 348 308 48 8 pint:PI1905|5end_hypothetical_protein_1847628..1847858_POSITIVE 634 330 281 185 137 pint:PI0211|5end_hypothetical_protein_204067..204297_POSITIVE 631 348 302 91 48 pint:PI1601|5end_hypothetical_protein_1530282..1530512_POSITIVE 628 320 275 222 177 pint:PI0561|5end_hypothetical_protein_508952..509182_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 898 310 261 143 94 pint:PI1666|3end_conserved_hypothetical_protein_1579418..1579568_POSITIVE 678 330 281 132 83 pint:PI1521|3end_hypothetical_protein_1441461..1441611_POSITIVE 660 280 231 65 16 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 658 290 241 115 66 pint:PI0551|3end_hypothetical_protein_502683..502833_POSITIVE 648 348 302 133 76 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 647 282 245 147 110 pint:PI0104|3end_hypothetical_protein_99346..99496_POSITIVE 641 348 308 46 6 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 628 320 275 100 55 pint:PI0560|3end_hypothetical_protein_508910..509060_POSITIVE 624 300 251 139 90 pint:PI0755|3end_hypothetical_protein_686884..687034_POSITIVE 618 290 241 119 70 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 612 348 309 40 1 pint:PI0669|3end_hypothetical_protein_611147..611297_POSITIVE 607 310 265 112 68 pint:PI0905|3end_hypothetical_protein_834697..834847_POSITIVE 602 290 241 122 76 pint:PI1601|3end_hypothetical_protein_1530454..1530604_POSITIVE 596 290 241 112 66 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 593 330 281 149 100 pint:PI1512|3end_hypothetical_protein_1429893..1430043_POSITIVE 593 280 236 105 61 pint:PI0004|3end_hypothetical_protein_6389..6539_POSITIVE 579 280 236 151 107 pint:PI0099|3end_hypothetical_protein_95777..95927_POSITIVE 574 335 293 46 4 pint:PI1520|3end_hypothetical_protein_1441370..1441520_POSITIVE 572 348 302 74 17 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 566 290 241 122 76 pint:PI1076|3end_hypothetical_protein_999065..999215_POSITIVE