Origin IGS: ttcagcaatataaaagtagtcctgtctatattctcaaaaggaaccacaatggctaaaaacagccttgattctgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgataaagcagttacgcaatagctatgtttgcgaaaaatatttacagacttgtagcctttttcaggctataaaacaatgtaaaaggaacaagataacggataaaaaagtcttttcattcggaacggctaaacagcagcattattttcccactgtgtttccaccgttccgcaaaatta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taattttgcggaacggtggaaacacagtgggaaaataatgctgctgtttagccgttccgaatgaaaagacttttttatccgttatcttgttccttttacattgttttatagcctgaaaaaggctacaagtctgtaaatatttttcgcaaacatagctattgcgtaactgctttatcatcaatgtgttataaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaacgtcaaatcgaaattatagttttcttaatgaattatctttacagaatcaaggctgtttttagccattgtggttccttttgagaatatagacaggactacttttatattgctgaa Mask Tandem Repeat Region ================================================ ttcagcaatataaaagtagtcctgtctatattctcaaaaggaaccacaatggctaaaaacagccttgattctgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgataaagcagttacgcaatagctatgtttgcgaaaaatatttacagacttgtagcctttttcaggctataaaacaatgtaaaaggaacaagataacggataaaaaagtcttttcattcggaacggctaaacagcagcattattttcccactgtgtttccaccgttccgcaaaatta Find is-nt database================================================ Query_seq: PI1577:PI1578|PI1577:PI1578:conserved hypothetical protein:rod shape-determining protein:->->:1503940..1504327 388 ttcagcaatataaaagtagtcctgtctatattctcaaaaggaaccacaatggctaaaaacagccttgattctgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgataaagcagttacgcaatagctatgtttgcgaaaaatatttacagacttgtagcctttttcaggctataaaacaatgtaaaaggaacaagataacggataaaaaagtcttttcattcggaacggctaaacagcagcattattttcccactgtgtttccaccgttccgcaaaatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1577:PI1578|PI1577:PI1578:conserved hypothetical protein:rod shape-determining protein:->->:1503940..1504327 388 ttcagcaatataaaagtagtcctgtctatattctcaaaaggaaccacaatggctaaaaacagccttgattctgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgataaagcagttacgcaatagctatgtttgcgaaaaatatttacagacttgtagcctttttcaggctataaaacaatgtaaaaggaacaagataacggataaaaaagtcttttcattcggaacggctaaacagcagcattattttcccactgtgtttccaccgttccgcaaaatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1577:PI1578|PI1577:PI1578:conserved hypothetical protein:rod shape-determining protein:->->:1503940..1504327 388 ttcagcaatataaaagtagtcctgtctatattctcaaaaggaaccacaatggctaaaaacagccttgattctgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgataaagcagttacgcaatagctatgtttgcgaaaaatatttacagacttgtagcctttttcaggctataaaacaatgtaaaaggaacaagataacggataaaaaagtcttttcattcggaacggctaaacagcagcattattttcccactgtgtttccaccgttccgcaaaatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ttcagcaatataaaagtagtcctgtctatattctcaaaaggaaccacaatggctaaaaacagccttgattctgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgataaagcagttacgcaatagctatgtttgcgaaaaatatttacagacttgtagcctttttcaggctataaaacaatgtaaaaggaacaagataacggataaaaaagtcttttcattcggaacggctaaacagcagcattattttcccactgtgtttccaccgttccgcaaaatta Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 109 End: 387 ............................................................................................................ M T L R K R L F C A A K P T L L P C K T A A F G M Q N N R F Y N T L M I K Q L R N S Y V C E K Y L Q T C S L F Q A I K Q . Protein_Len: 34 Strand: - Start: 149 End: 250 .................................................................................................................................................... A K V T C F L R K Q F A F C Y T K Y C M S S L A T V C Y S H K R F M .......................................................................................................................................... Protein_Len: 31 Strand: - Start: 99 End: 191 .................................................................................................. L K S K V N R F R S K Q A A F G V S K G H L V A A K P I C F M ..................................................................................................................................................................................................... ttcagcaatataaaagtagtcctgtctatattctcaaaaggaaccacaatggctaaaaacagccttgattctgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgataaagcagttacgcaatagctatgtttgcgaaaaatatttacagacttgtagcctttttcaggctataaaacaatgtaaaaggaacaagataacggataaaaaagtcttttcattcggaacggctaaacagcagcattattttcccactgtgtttccaccgttccgcaaaatta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ttcagcaatataaaagtagtcctgtctatattctcaaaaggaaccacaatggctaaaaacagccttgattctgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgataaagcagttacgcaatagctatgtttgcgaaaaatatttacagacttgtagcctttttcaggctataaaacaatgtaaaaggaacaagataacggataaaaaagtcttttcattcggaacggctaaacagcagcattattttcccactgtgtttccaccgttccgcaaaatta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -14.8 Tail_Score: -4.13767 Start: 123 End: 173 Full_Region: TTTGACGTTGCGAAA GCGGCTCTTTTGCGCTGCAAAACC TAC GCTTTTACCGTGCAAAACAGCCGC TTTTGGAATGCAAAA ..........................................................................................................................GCGGCTCTTTTGCGCTGCAAAACCTACGCTTTTACCGTGCAAAACAGCCGC....................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -14.8 Tail_Score: -3.54424 Start: 123 End: 173 Full_Region: ttttgcattccaaaa gcggctgttttgcacggtaaaagc gta ggttttgcagcgcaaaagagccgc tttcgcaacgtcaaa ..........................................................................................................................gcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgc....................................................................................................................................................................................................................... TransTerm Strand: - Conf: 47 HP_score: -3.6 Tail_Score: -2.98312 Start: 260 End: 284 Full_Region: ttccttttacattgt tttatagcct gaaaa aggctacaag tctgtaaatattttt ...................................................................................................................................................................................................................................................................tttatagcctgaaaaaggctacaag........................................................................................................ Find igs database================================================ Query_seq: PI1577:PI1578|PI1577:PI1578:conserved hypothetical protein:rod shape-determining protein:->->:1503940..1504327 388 ttcagcaatataaaagtagtcctgtctatattctcaaaaggaaccacaatggctaaaaacagccttgattctgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgataaagcagttacgcaatagctatgtttgcgaaaaatatttacagacttgtagcctttttcaggctataaaacaatgtaaaaggaacaagataacggataaaaaagtcttttcattcggaacggctaaacagcagcattattttcccactgtgtttccaccgttccgcaaaatta Intra-Species Hit: Count: 40 Min: 1 Max: 388 Len: 388 Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 0.0 bit: 769.0 Len: 388 Query Start:1 Query End:388 Subject Strand: POSITIVE Subject Start: 1 Subject End: 388 ttcagcaatataaaagtagtcctgtctatattctcaaaaggaaccacaatggctaaaaacagccttgattctgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgataaagcagttacgcaatagctatgtttgcgaaaaatatttacagacttgtagcctttttcaggctataaaacaatgtaaaaggaacaagataacggataaaaaagtcttttcattcggaacggctaaacagcagcattattttcccactgtgtttccaccgttccgcaaaatta ttcagcaatataaaagtagtcctgtctatattctcaaaaggaaccacaatggctaaaaacagccttgattctgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgataaagcagttacgcaatagctatgtttgcgaaaaatatttacagacttgtagcctttttcaggctataaaacaatgtaaaaggaacaagataacggataaaaaagtcttttcattcggaacggctaaacagcagcattattttcccactgtgtttccaccgttccgcaaaatta Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 1.0E-52 bit: 208.0 Len: 137 Query Start:67 Query End:203 Subject Strand: POSITIVE Subject Start: 153 Subject End: 289 ..................................................................gattctgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataa......................................................................................................................................................................................... ..................................................................gattttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataa......................................................................................................................................................................................... Subject: pint_PI2056_PI2057|conserved hypothetical protein:conserved hypothetical protein; possible metal-dependent membrane protease|POSITIVE:POSITIVE|[2014489,2015078]|590 HSP 1 e-value: 7.0E-51 bit: 202.0 Len: 138 Query Start:62 Query End:199 Subject Strand: POSITIVE Subject Start: 334 Subject End: 471 .............................................................gccttgattctgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................................................................. .............................................................gccttgattttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggtttt............................................................................................................................................................................................. Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 2.0E-47 bit: 190.0 Len: 144 Query Start:72 Query End:215 Subject Strand: NEGATIVE Subject Start: 316 Subject End: 459 .......................................................................tgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgat............................................................................................................................................................................. .......................................................................tgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagcagctcttttgcaacgcaaaacctatgcttttaccgtgcaaaacagccgcttttaggatgcaaaacaataggttttgtaacgcactgatgat............................................................................................................................................................................. Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 4.0E-46 bit: 186.0 Len: 114 Query Start:99 Query End:212 Subject Strand: NEGATIVE Subject Start: 75 Subject End: 188 ..................................................................................................taatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgat................................................................................................................................................................................ ..................................................................................................taatttcgatttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacacgttgat................................................................................................................................................................................ Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 2.0E-45 bit: 184.0 Len: 101 Query Start:99 Query End:199 Subject Strand: POSITIVE Subject Start: 143 Subject End: 243 ..................................................................................................taatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................................................................. ..................................................................................................taatttcgatttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt............................................................................................................................................................................................. Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 2.0E-45 bit: 184.0 Len: 105 Query Start:108 Query End:212 Subject Strand: POSITIVE Subject Start: 98 Subject End: 202 ...........................................................................................................tttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgat................................................................................................................................................................................ ...........................................................................................................tttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgat................................................................................................................................................................................ Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 2.0E-45 bit: 184.0 Len: 105 Query Start:108 Query End:212 Subject Strand: NEGATIVE Subject Start: 98 Subject End: 202 ...........................................................................................................tttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgat................................................................................................................................................................................ ...........................................................................................................tttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgat................................................................................................................................................................................ Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 9.0E-44 bit: 178.0 Len: 150 Query Start:108 Query End:257 Subject Strand: NEGATIVE Subject Start: 37 Subject End: 186 ...........................................................................................................tttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgataaagcagttacgcaatagctatgtttgcgaaaaatatttaca................................................................................................................................... ...........................................................................................................tttgacgttgcgaaagcggctcttttacgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgtaatacgttgatgattagatagttaagcaatagatatatgtgcgaaaaatatttaca................................................................................................................................... Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 6.0E-42 bit: 172.0 Len: 107 Query Start:108 Query End:214 Subject Strand: POSITIVE Subject Start: 253 Subject End: 359 ...........................................................................................................tttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatga.............................................................................................................................................................................. ...........................................................................................................tttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatga.............................................................................................................................................................................. Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 2.0E-41 bit: 170.0 Len: 102 Query Start:98 Query End:199 Subject Strand: NEGATIVE Subject Start: 387 Subject End: 488 .................................................................................................ataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................................................................. .................................................................................................ataatttcgatttggcattgcgaaagcggctgttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................................................................. Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 2.0E-41 bit: 170.0 Len: 150 Query Start:108 Query End:257 Subject Strand: POSITIVE Subject Start: 89 Subject End: 238 ...........................................................................................................tttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgataaagcagttacgcaatagctatgtttgcgaaaaatatttaca................................................................................................................................... ...........................................................................................................tttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttaca................................................................................................................................... Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 1.0E-39 bit: 165.0 Len: 115 Query Start:98 Query End:212 Subject Strand: NEGATIVE Subject Start: 398 Subject End: 512 .................................................................................................ataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgat................................................................................................................................................................................ .................................................................................................ataatttcgttttgacgttgcgaaagcggctgttttgcgaggtaaaacctacgcttttgccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaacacgttgat................................................................................................................................................................................ Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 6.0E-39 bit: 163.0 Len: 118 Query Start:108 Query End:225 Subject Strand: NEGATIVE Subject Start: 229 Subject End: 346 ...........................................................................................................tttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgataaagcagtta................................................................................................................................................................... ...........................................................................................................tttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccacttttggaacgcaaaacaataggttttgtaacacactgatgattaagaagtta................................................................................................................................................................... Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 6.0E-39 bit: 163.0 Len: 102 Query Start:98 Query End:199 Subject Strand: POSITIVE Subject Start: 39 Subject End: 140 .................................................................................................ataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................................................................. .................................................................................................ataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggtttt............................................................................................................................................................................................. Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 121 Query Start:92 Query End:212 Subject Strand: NEGATIVE Subject Start: 28 Subject End: 148 ...........................................................................................aaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgat................................................................................................................................................................................ ...........................................................................................aaaacaataatttcgttttgacgttgcgaaagcggctcttttacaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggttttgtaaagcattgat................................................................................................................................................................................ Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 109 Query Start:92 Query End:200 Subject Strand: POSITIVE Subject Start: 238 Subject End: 346 ...........................................................................................aaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttta............................................................................................................................................................................................ ...........................................................................................aaaacgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttta............................................................................................................................................................................................ Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 9.0E-38 bit: 159.0 Len: 104 Query Start:108 Query End:211 Subject Strand: POSITIVE Subject Start: 185 Subject End: 288 ...........................................................................................................tttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattga................................................................................................................................................................................. ...........................................................................................................tttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacattga................................................................................................................................................................................. Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 1.0E-36 bit: 155.0 Len: 106 Query Start:108 Query End:213 Subject Strand: NEGATIVE Subject Start: 291 Subject End: 396 ...........................................................................................................tttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatg............................................................................................................................................................................... ...........................................................................................................tttgacgttgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacacgttgatg............................................................................................................................................................................... Subject: pint_PI0694_PI0695|Na+/dicarboxylate or sulfate symporter:xanthine/uracil permease family protein|POSITIVE:POSITIVE|[631238,631552]|315 HSP 1 e-value: 1.0E-36 bit: 155.0 Len: 138 Query Start:62 Query End:199 Subject Strand: POSITIVE Subject Start: 81 Subject End: 218 .............................................................gccttgattctgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................................................................. .............................................................gccttggttttgtaaagataattccgacggaaaacggtaatttcgatttgacactgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................................................................. Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 5.0E-36 bit: 153.0 Len: 165 Query Start:108 Query End:272 Subject Strand: NEGATIVE Subject Start: 79 Subject End: 243 ...........................................................................................................tttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgataaagcagttacgcaatagctatgtttgcgaaaaatatttacagacttgtagcctttt.................................................................................................................... ...........................................................................................................tttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgtaaaacaataggttttgtaaggcgttgataaacaaagagttgcgcaatagaattacttgtgaaaaatatttacagatttgttgcctttt.................................................................................................................... Subject: pint_PI1803_PI1804|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1737852,1738248]|397 HSP 1 e-value: 5.0E-36 bit: 153.0 Len: 129 Query Start:72 Query End:200 Subject Strand: POSITIVE Subject Start: 269 Subject End: 397 .......................................................................tgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttta............................................................................................................................................................................................ .......................................................................tgtaaagattattccgaaagaaaacggtaatttcgatttggcattgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttacaatgcaaaacaataggtttta............................................................................................................................................................................................ Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 3.0E-34 bit: 147.0 Len: 102 Query Start:98 Query End:199 Subject Strand: POSITIVE Subject Start: 120 Subject End: 221 .................................................................................................ataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................................................................. .................................................................................................ataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggtttt............................................................................................................................................................................................. Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 2.0E-32 bit: 141.0 Len: 147 Query Start:112 Query End:258 Subject Strand: POSITIVE Subject Start: 299 Subject End: 445 ...............................................................................................................acgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgataaagcagttacgcaatagctatgtttgcgaaaaatatttacag.................................................................................................................................. ...............................................................................................................acgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttacag.................................................................................................................................. Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 142 Query Start:65 Query End:206 Subject Strand: NEGATIVE Subject Start: 167 Subject End: 308 ................................................................ttgattctgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacac...................................................................................................................................................................................... ................................................................ttgattttgtaaagataattcggagggaaaatgataatttcgatttgacgttgcgaaagcgtatgttttgcgatgcaaaagagccgcttttaccgtgcaaaacctacgcttttacaatgcaaaacaataggttttataacac...................................................................................................................................................................................... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 150 Query Start:108 Query End:257 Subject Strand: NEGATIVE Subject Start: 121 Subject End: 270 ...........................................................................................................tttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgataaagcagttacgcaatagctatgtttgcgaaaaatatttaca................................................................................................................................... ...........................................................................................................tttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttacaaagcgttgataataaagcagttacgcaaaagatattgttgtgaaaaatatttaca................................................................................................................................... Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 5.0E-24 bit: 113.0 Len: 101 Query Start:99 Query End:199 Subject Strand: NEGATIVE Subject Start: 57 Subject End: 157 ..................................................................................................taatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................................................................. ..................................................................................................taatttcgatttggcgttgcgaaagcggctgttttgcagcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt............................................................................................................................................................................................. Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 2.0E-23 bit: 111.0 Len: 128 Query Start:72 Query End:199 Subject Strand: POSITIVE Subject Start: 147 Subject End: 274 .......................................................................tgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................................................................. .......................................................................tgtaaagataattcgttgaaaaaatgataatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt............................................................................................................................................................................................. Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 2.0E-23 bit: 111.0 Len: 132 Query Start:72 Query End:203 Subject Strand: NEGATIVE Subject Start: 229 Subject End: 359 .......................................................................tgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataa......................................................................................................................................................................................... .......................................................................tgtaaagataattcattga-aaaacgataatttcgatttggcattgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacacttttggaatgcaaaacaataggttttataa......................................................................................................................................................................................... Subject: pint_PI0195_PI0196|epimerase/reductase:hypothetical protein|POSITIVE:POSITIVE|[188263,188574]|312 HSP 1 e-value: 7.0E-23 bit: 109.0 Len: 131 Query Start:69 Query End:199 Subject Strand: POSITIVE Subject Start: 145 Subject End: 275 ....................................................................ttctgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................................................................. ....................................................................ttctgtaaaaataattcgtagagaaaatgacaatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt............................................................................................................................................................................................. Subject: pint_PI1728_PI1729|ATP-dependent Clp protease, proteolytic subunit:FKBP-type peptidyl-prolyl cis-trans isomerase, trigger factor|POSITIVE:POSITIVE|[1647719,1648555]|837 HSP 1 e-value: 3.0E-22 bit: 107.0 Len: 186 Query Start:72 Query End:257 Subject Strand: NEGATIVE Subject Start: 358 Subject End: 543 .......................................................................tgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgataaagcagttacgcaatagctatgtttgcgaaaaatatttaca................................................................................................................................... .......................................................................tgtaaagataattcgttgagaaaacggtaatttcgatttgacgttgcaaaagcgtaggttttgcaaggcaaaagagccgcttttaccgtgcaaaagcggctcttttacaatgcgaaacaataggttttataacacactgataataaaacggttacacaacagttatgcttgtaaaaaatatttaca................................................................................................................................... HSP 2 e-value: 9.0E-7 bit: 56.0 Len: 36 Query Start:120 Query End:155 Subject Strand: POSITIVE Subject Start: 461 Subject End: 496 .......................................................................................................................aaagcggctcttttgcgctgcaaaacctacgctttt......................................................................................................................................................................................................................................... .......................................................................................................................aaagcggctcttttgccttgcaaaacctacgctttt......................................................................................................................................................................................................................................... Subject: pint_PI1915_PI1916|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1859967,1860350]|384 HSP 1 e-value: 1.0E-21 bit: 105.0 Len: 112 Query Start:92 Query End:203 Subject Strand: POSITIVE Subject Start: 137 Subject End: 248 ...........................................................................................aaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacc-tacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataa......................................................................................................................................................................................... ...........................................................................................aaaacgataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggttttataa......................................................................................................................................................................................... HSP 2 e-value: 1.0E-9 bit: 65.9 Len: 57 Query Start:120 Query End:176 Subject Strand: NEGATIVE Subject Start: 165 Subject End: 221 .......................................................................................................................aaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttt.................................................................................................................................................................................................................... .......................................................................................................................aaagcggctgttttgcaacgtaaaacatacgcttttaccgtgcaaaacagccgcttt.................................................................................................................................................................................................................... Subject: pint_PI1981_PI1982|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1938199,1938578]|380 HSP 1 e-value: 4.0E-21 bit: 103.0 Len: 104 Query Start:100 Query End:203 Subject Strand: POSITIVE Subject Start: 175 Subject End: 278 ...................................................................................................aatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataa......................................................................................................................................................................................... ...................................................................................................aatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataa......................................................................................................................................................................................... Subject: pint_PI1958_PI1959|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1917430,1917847]|418 HSP 1 e-value: 4.0E-21 bit: 103.0 Len: 104 Query Start:100 Query End:203 Subject Strand: POSITIVE Subject Start: 213 Subject End: 316 ...................................................................................................aatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataa......................................................................................................................................................................................... ...................................................................................................aatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataa......................................................................................................................................................................................... Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 4.0E-21 bit: 103.0 Len: 108 Query Start:108 Query End:215 Subject Strand: POSITIVE Subject Start: 150 Subject End: 257 ...........................................................................................................tttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgat............................................................................................................................................................................. ...........................................................................................................tttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgat............................................................................................................................................................................. Subject: pint_PI0854_PI0855|MiaB-like tRNA modifying enzyme:hypothetical protein|POSITIVE:POSITIVE|[788060,789233]|1174 HSP 1 e-value: 7.0E-20 bit: 99.6 Len: 106 Query Start:98 Query End:203 Subject Strand: POSITIVE Subject Start: 770 Subject End: 875 .................................................................................................ataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataa......................................................................................................................................................................................... .................................................................................................ataatttcgatttggcgttgcgaaagcgtaggttttgcaacgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttataa......................................................................................................................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:120 Query End:154 Subject Strand: NEGATIVE Subject Start: 792 Subject End: 826 .......................................................................................................................aaagcggctcttttgcgctgcaaaacctacgcttt.......................................................................................................................................................................................................................................... .......................................................................................................................aaagcggctgttttgcgttgcaaaacctacgcttt.......................................................................................................................................................................................................................................... Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 102 Query Start:98 Query End:199 Subject Strand: NEGATIVE Subject Start: 107 Subject End: 208 .................................................................................................ataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................................................................. .................................................................................................ataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacagccgcttttgccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt............................................................................................................................................................................................. Subject: pint_PI1441_PI1442|hypothetical protein:radical-activating enzyme (pyruvate-formate lyase-activating enzyme)|POSITIVE:POSITIVE|[1363734,1364088]|355 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 128 Query Start:72 Query End:199 Subject Strand: NEGATIVE Subject Start: 86 Subject End: 213 .......................................................................tgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................................................................. .......................................................................tgtaaagataatttacaaggaaaacggtattttcgatttgacgttgcgaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt............................................................................................................................................................................................. HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:120 Query End:154 Subject Strand: POSITIVE Subject Start: 131 Subject End: 165 .......................................................................................................................aaagcggctcttttgcgctgcaaaacctacgcttt.......................................................................................................................................................................................................................................... .......................................................................................................................aaagcggctcttttgcattgcaaaacctacgcttt.......................................................................................................................................................................................................................................... Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 4.0E-15 bit: 83.8 Len: 106 Query Start:108 Query End:213 Subject Strand: POSITIVE Subject Start: 226 Subject End: 331 ...........................................................................................................tttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatg............................................................................................................................................................................... ...........................................................................................................tttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatg............................................................................................................................................................................... Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 6.0E-14 bit: 79.8 Len: 128 Query Start:72 Query End:199 Subject Strand: POSITIVE Subject Start: 144 Subject End: 271 .......................................................................tgtaaagataattcattaagaaaactataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt............................................................................................................................................................................................. .......................................................................tgtaaggataattcgtaaggaaaatgataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggtttt............................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUCAGCAAUAUAAAAGUAGUCCUGUCUAUAUUCUCAAAAGGAACCACAAUGGCUAAAAACAGCCUUGAUUCUGUAAAGAUAAUUCAUUAAGAAAACUAUAAUUUCGAUUUGACGUUGCGAAAGCGGCUCUUUUGCGCUGCAAAACCUACGCUUUUACCGUGCAAAACAGCCGCUUUUGGAAUGCAAAACAAUAGGUUUUAUAACACAUUGAUGAUAAAGCAGUUACGCAAUAGCUAUGUUUGCGAAAAAUAUUUACAGACUUGUAGCCUUUUUCAGGCUAUAAAACAAUGUAAAAGGAACAAGAUAACGGAUAAAAAAGUCUUUUCAUUCGGAACGGCUAAACAGCAGCAUUAUUUUCCCACUGUGUUUCCACCGUUCCGCAAAAUUA ..................(((((((((...((((....)))).((.(((.((((......)))))))..((((((((......(((((((......(((((..((..((((.((((.(((((((((((.((((((((.(.((((.......)))).).)))))))).))))))))))).))))))))......))..))))).....)))))))...........(((((.........))))).......)))))))).(((((((((.....)))))))))............))....)))))..)))).................((((((((..(((((.(((.............))))))))...))))))))........ (-98.12) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUUUUGCGGAACGGUGGAAACACAGUGGGAAAAUAAUGCUGCUGUUUAGCCGUUCCGAAUGAAAAGACUUUUUUAUCCGUUAUCUUGUUCCUUUUACAUUGUUUUAUAGCCUGAAAAAGGCUACAAGUCUGUAAAUAUUUUUCGCAAACAUAGCUAUUGCGUAACUGCUUUAUCAUCAAUGUGUUAUAAAACCUAUUGUUUUGCAUUCCAAAAGCGGCUGUUUUGCACGGUAAAAGCGUAGGUUUUGCAGCGCAAAAGAGCCGCUUUCGCAACGUCAAAUCGAAAUUAUAGUUUUCUUAAUGAAUUAUCUUUACAGAAUCAAGGCUGUUUUUAGCCAUUGUGGUUCCUUUUGAGAAUAUAGACAGGACUACUUUUAUAUUGCUGAA ...(((..(((((((((..((((((((((.........))))).))))).)))))))))...)))...............((..(((((((...............((((..((..((((((((((((.((((((((.((..((((.......((((((((((....(((........(((((.(((....))).)))))....))).....(((((((((.((((((.(.((((((.(...).)))))).).)))))).))))))))))))).((......)).....)))))).......))))..)).)))))))).....(((((....))))).))))))..)))))).))..)))))))))))..))............... (-101.50) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 962 180 131 129 80 pint:PI0055|5end_hypothetical_protein_54815..55045_POSITIVE 943 160 113 60 13 pint:PI1694|5end_hypothetical_protein_1609717..1609947_POSITIVE 906 170 121 231 182 pint:PI2003|5end_hypothetical_protein_1960823..1961053_POSITIVE 906 170 121 70 21 pint:PI2002|5end_hypothetical_protein_1960662..1960892_POSITIVE 906 170 121 58 9 pint:PI1129|5end_hypothetical_protein_1055377..1055607_POSITIVE 888 190 141 90 41 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 888 190 141 90 41 pint:PI1346|5end_hypothetical_protein_1260814..1261044_POSITIVE 888 190 141 51 2 pint:PI1339|5end_hypothetical_protein_1256671..1256901_POSITIVE 888 190 141 216 167 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 888 190 141 221 172 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 888 190 141 51 2 pint:PI0104|5end_hypothetical_protein_99105..99335_POSITIVE 888 190 141 62 13 pint:PI0061|5end_hypothetical_protein_60500..60730_POSITIVE 888 190 141 51 2 pint:PI0053|5end_hypothetical_protein_54727..54957_POSITIVE 888 190 141 62 13 pint:PI0004|5end_hypothetical_protein_6199..6429_POSITIVE 873 160 111 60 11 pint:PI1601|5end_hypothetical_protein_1530282..1530512_POSITIVE 861 190 144 47 1 pint:PI1905|5end_hypothetical_protein_1847628..1847858_POSITIVE 859 190 141 90 41 pint:PI1567|5end_hypothetical_protein_1489229..1489459_POSITIVE 855 160 111 60 11 pint:PI1076|5end_hypothetical_protein_998893..999123_POSITIVE 854 180 131 88 39 pint:PI1168|5end_hypothetical_protein_1089696..1089926_POSITIVE 854 180 131 80 31 pint:PI1167|5end_hypothetical_protein_1089688..1089918_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 962 180 131 122 73 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 962 180 131 63 14 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 926 160 111 102 53 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 906 170 121 53 4 pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE 906 160 111 142 93 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 887 160 111 142 93 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 857 159 111 151 103 pint:PI1601|3end_hypothetical_protein_1530454..1530604_POSITIVE 852 160 111 146 97 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 839 159 111 151 103 pint:PI1076|3end_hypothetical_protein_999065..999215_POSITIVE 826 199 151 54 6 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 826 199 151 54 6 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE 814 169 121 151 103 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 798 160 113 116 69 pint:PI1356|3end_hypothetical_protein_1273340..1273490_POSITIVE 798 169 121 151 103 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 797 199 152 48 1 pint:PI0669|3end_hypothetical_protein_611147..611297_POSITIVE 791 169 121 151 103 pint:PI0670|3end_hypothetical_protein_611280..611430_POSITIVE 754 199 151 50 2 pint:PI1051|3end_hypothetical_protein_970228..970378_POSITIVE 751 160 111 142 93 pint:PI0004|3end_hypothetical_protein_6389..6539_POSITIVE 679 147 101 151 105 pint:PI1829|3end_hypothetical_protein_1769439..1769589_POSITIVE 678 160 113 142 95 pint:PI0158|3end_hypothetical_protein_151298..151448_POSITIVE