Origin IGS: ctgtgcaaacgatgcagtcattcccaataggaataatactgctgataataatagttttttcatacttgtaataattttgttagatagtgaataaaattttaatactaatatcaatagtgtttaagcgtctattttcatctggctggatatactttgctagattcatacccttgtacttttcacagcctaaaaataatcgtaccaatctttcaagctgctgaagaaaggaaatcaccatacgaagccaattacattgctgttgtcattgtgaataataccaatgacatatacaacattcttgatttctttaaataatccatagtcattcagtttttagttataattatattgtcaatcacatagctcgtcaaataatttaattagtttagtatatacttaattcctgcacacagtgcagctattttgcaaatatagcaatgcttctatgttcaagtgcaatattaaagatttttgttgaaatacgcaagtttttttataaaaaatatcatcagcactaaaaacaaaaaccattttatatggcacattggagttgtagaaagaaaataagtggttataaaagactatacagtaagacctctgtaaaacccattctgtaccaaaacgctgttactgataaccaacaaattgcatttgttatttcgttgttttgattgagttttgcagaggtctcaatagatgattctacatcaaccatcagttctttttagtggacctgcggagagtcgaactccggtccgcacaaggaaaccatacgctttctacatgcttatttcagcctttggttttcgagcattggcaagacctgaaccaccaaccaatgccttatcctctaaatttcatttgggcagcgaggcatacccaaactatttccgatttaacctgcaccgctttaccctccgattcggaacaacatctttggagcagtgtctcgttcaactatctaatagtcgaataaagccagtaatctactgtacttcgattaggcagcgagagcgtaattgttttcgccaattaattgtttgataaccgatatttaggagccagctaccaatgctccgcatgcttacataccatttcgtcttgccgtcaaatccatacaagcccgaattattatatcacaatatataatttgcaaagatattgtaagtttctgacatgaccaaacttttaaccgctttttaagttcaataaagtaaagttctcatagagtttgactattctactacagatatttagacgtaagtgaaccgtaaatggcttatattgaaaatgtacaaacagaacgatagagaagcttttcagaggtttcaatattacgtctgattaaaactattctcttcagttccttgtaagaaagaatgagaattccaaaataagaaaaggctgaatcagattactctgtcccagcctttgaatggttattctttaattcttcagattcaaatca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgatttgaatctgaagaattaaagaataaccattcaaaggctgggacagagtaatctgattcagccttttcttattttggaattctcattctttcttacaaggaactgaagagaatagttttaatcagacgtaatattgaaacctctgaaaagcttctctatcgttctgtttgtacattttcaatataagccatttacggttcacttacgtctaaatatctgtagtagaatagtcaaactctatgagaactttactttattgaacttaaaaagcggttaaaagtttggtcatgtcagaaacttacaatatctttgcaaattatatattgtgatataataattcgggcttgtatggatttgacggcaagacgaaatggtatgtaagcatgcggagcattggtagctggctcctaaatatcggttatcaaacaattaattggcgaaaacaattacgctctcgctgcctaatcgaagtacagtagattactggctttattcgactattagatagttgaacgagacactgctccaaagatgttgttccgaatcggagggtaaagcggtgcaggttaaatcggaaatagtttgggtatgcctcgctgcccaaatgaaatttagaggataaggcattggttggtggttcaggtcttgccaatgctcgaaaaccaaaggctgaaataagcatgtagaaagcgtatggtttccttgtgcggaccggagttcgactctccgcaggtccactaaaaagaactgatggttgatgtagaatcatctattgagacctctgcaaaactcaatcaaaacaacgaaataacaaatgcaatttgttggttatcagtaacagcgttttggtacagaatgggttttacagaggtcttactgtatagtcttttataaccacttattttctttctacaactccaatgtgccatataaaatggtttttgtttttagtgctgatgatattttttataaaaaaacttgcgtatttcaacaaaaatctttaatattgcacttgaacatagaagcattgctatatttgcaaaatagctgcactgtgtgcaggaattaagtatatactaaactaattaaattatttgacgagctatgtgattgacaatataattataactaaaaactgaatgactatggattatttaaagaaatcaagaatgttgtatatgtcattggtattattcacaatgacaacagcaatgtaattggcttcgtatggtgatttcctttcttcagcagcttgaaagattggtacgattatttttaggctgtgaaaagtacaagggtatgaatctagcaaagtatatccagccagatgaaaatagacgcttaaacactattgatattagtattaaaattttattcactatctaacaaaattattacaagtatgaaaaaactattattatcagcagtattattcctattgggaatgactgcatcgtttgcacag Mask Tandem Repeat Region ================================================ ctgtgcaaacgatgcagtcattcccaataggaataatactgctgataataatagttttttcatacttgtaataattttgttagatagtgaataaaattttaatactaatatcaatagtgtttaagcgtctattttcatctggctggatatactttgctagattcatacccttgtacttttcacagcctaaaaataatcgtaccaatctttcaagctgctgaagaaaggaaatcaccatacgaagccaattacattgctgttgtcattgtgaataataccaatgacatatacaacattcttgatttctttaaataatccatagtcattcagtttttagttataattatattgtcaatcacatagctcgtcaaataatttaattagtttagtatatacttaattcctgcacacagtgcagctattttgcaaatatagcaatgcttctatgttcaagtgcaatattaaagatttttgttgaaatacgcaagtttttttataaaaaatatcatcagcactaaaaacaaaaaccattttatatggcacattggagttgtagaaagaaaataagtggttataaaagactatacagtaagacctctgtaaaacccattctgtaccaaaacgctgttactgataaccaacaaattgcatttgttatttcgttgttttgattgagttttgcagaggtctcaatagatgattctacatcaaccatcagttctttttagtggacctgcggagagtcgaactccggtccgcacaaggaaaccatacgctttctacatgcttatttcagcctttggttttcgagcattggcaagacctgaaccaccaaccaatgccttatcctctaaatttcatttgggcagcgaggcatacccaaactatttccgatttaacctgcaccgctttaccctccgattcggaacaacatctttggagcagtgtctcgttcaactatctaatagtcgaataaagccagtaatctactgtacttcgattaggcagcgagagcgtaattgttttcgccaattaattgtttgataaccgatatttaggagccagctaccaatgctccgcatgcttacataccatttcgtcttgccgtcaaatccatacaagcccgaattattatatcacaatatataatttgcaaagatattgtaagtttctgacatgaccaaacttttaaccgctttttaagttcaataaagtaaagttctcatagagtttgactattctactacagatatttagacgtaagtgaaccgtaaatggcttatattgaaaatgtacaaacagaacgatagagaagcttttcagaggtttcaatattacgtctgattaaaactattctcttcagttccttgtaagaaagaatgagaattccaaaataagaaaaggctgaatcagattactctgtcccagcctttgaatggttattctttaattcttcagattcaaatca Find is-nt database================================================ Query_seq: PI1568:PI1569|PI1568:PI1569:OmpA family protein:hypothetical protein:->->:1491104..1492571 1468 ctgtgcaaacgatgcagtcattcccaataggaataatactgctgataataatagttttttcatacttgtaataattttgttagatagtgaataaaattttaatactaatatcaatagtgtttaagcgtctattttcatctggctggatatactttgctagattcatacccttgtacttttcacagcctaaaaataatcgtaccaatctttcaagctgctgaagaaaggaaatcaccatacgaagccaattacattgctgttgtcattgtgaataataccaatgacatatacaacattcttgatttctttaaataatccatagtcattcagtttttagttataattatattgtcaatcacatagctcgtcaaataatttaattagtttagtatatacttaattcctgcacacagtgcagctattttgcaaatatagcaatgcttctatgttcaagtgcaatattaaagatttttgttgaaatacgcaagtttttttataaaaaatatcatcagcactaaaaacaaaaaccattttatatggcacattggagttgtagaaagaaaataagtggttataaaagactatacagtaagacctctgtaaaacccattctgtaccaaaacgctgttactgataaccaacaaattgcatttgttatttcgttgttttgattgagttttgcagaggtctcaatagatgattctacatcaaccatcagttctttttagtggacctgcggagagtcgaactccggtccgcacaaggaaaccatacgctttctacatgcttatttcagcctttggttttcgagcattggcaagacctgaaccaccaaccaatgccttatcctctaaatttcatttgggcagcgaggcatacccaaactatttccgatttaacctgcaccgctttaccctccgattcggaacaacatctttggagcagtgtctcgttcaactatctaatagtcgaataaagccagtaatctactgtacttcgattaggcagcgagagcgtaattgttttcgccaattaattgtttgataaccgatatttaggagccagctaccaatgctccgcatgcttacataccatttcgtcttgccgtcaaatccatacaagcccgaattattatatcacaatatataatttgcaaagatattgtaagtttctgacatgaccaaacttttaaccgctttttaagttcaataaagtaaagttctcatagagtttgactattctactacagatatttagacgtaagtgaaccgtaaatggcttatattgaaaatgtacaaacagaacgatagagaagcttttcagaggtttcaatattacgtctgattaaaactattctcttcagttccttgtaagaaagaatgagaattccaaaataagaaaaggctgaatcagattactctgtcccagcctttgaatggttattctttaattcttcagattcaaatca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1568:PI1569|PI1568:PI1569:OmpA family protein:hypothetical protein:->->:1491104..1492571 1468 ctgtgcaaacgatgcagtcattcccaataggaataatactgctgataataatagttttttcatacttgtaataattttgttagatagtgaataaaattttaatactaatatcaatagtgtttaagcgtctattttcatctggctggatatactttgctagattcatacccttgtacttttcacagcctaaaaataatcgtaccaatctttcaagctgctgaagaaaggaaatcaccatacgaagccaattacattgctgttgtcattgtgaataataccaatgacatatacaacattcttgatttctttaaataatccatagtcattcagtttttagttataattatattgtcaatcacatagctcgtcaaataatttaattagtttagtatatacttaattcctgcacacagtgcagctattttgcaaatatagcaatgcttctatgttcaagtgcaatattaaagatttttgttgaaatacgcaagtttttttataaaaaatatcatcagcactaaaaacaaaaaccattttatatggcacattggagttgtagaaagaaaataagtggttataaaagactatacagtaagacctctgtaaaacccattctgtaccaaaacgctgttactgataaccaacaaattgcatttgttatttcgttgttttgattgagttttgcagaggtctcaatagatgattctacatcaaccatcagttctttttagtggacctgcggagagtcgaactccggtccgcacaaggaaaccatacgctttctacatgcttatttcagcctttggttttcgagcattggcaagacctgaaccaccaaccaatgccttatcctctaaatttcatttgggcagcgaggcatacccaaactatttccgatttaacctgcaccgctttaccctccgattcggaacaacatctttggagcagtgtctcgttcaactatctaatagtcgaataaagccagtaatctactgtacttcgattaggcagcgagagcgtaattgttttcgccaattaattgtttgataaccgatatttaggagccagctaccaatgctccgcatgcttacataccatttcgtcttgccgtcaaatccatacaagcccgaattattatatcacaatatataatttgcaaagatattgtaagtttctgacatgaccaaacttttaaccgctttttaagttcaataaagtaaagttctcatagagtttgactattctactacagatatttagacgtaagtgaaccgtaaatggcttatattgaaaatgtacaaacagaacgatagagaagcttttcagaggtttcaatattacgtctgattaaaactattctcttcagttccttgtaagaaagaatgagaattccaaaataagaaaaggctgaatcagattactctgtcccagcctttgaatggttattctttaattcttcagattcaaatca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1568:PI1569|PI1568:PI1569:OmpA family protein:hypothetical protein:->->:1491104..1492571 1468 ctgtgcaaacgatgcagtcattcccaataggaataatactgctgataataatagttttttcatacttgtaataattttgttagatagtgaataaaattttaatactaatatcaatagtgtttaagcgtctattttcatctggctggatatactttgctagattcatacccttgtacttttcacagcctaaaaataatcgtaccaatctttcaagctgctgaagaaaggaaatcaccatacgaagccaattacattgctgttgtcattgtgaataataccaatgacatatacaacattcttgatttctttaaataatccatagtcattcagtttttagttataattatattgtcaatcacatagctcgtcaaataatttaattagtttagtatatacttaattcctgcacacagtgcagctattttgcaaatatagcaatgcttctatgttcaagtgcaatattaaagatttttgttgaaatacgcaagtttttttataaaaaatatcatcagcactaaaaacaaaaaccattttatatggcacattggagttgtagaaagaaaataagtggttataaaagactatacagtaagacctctgtaaaacccattctgtaccaaaacgctgttactgataaccaacaaattgcatttgttatttcgttgttttgattgagttttgcagaggtctcaatagatgattctacatcaaccatcagttctttttagtggacctgcggagagtcgaactccggtccgcacaaggaaaccatacgctttctacatgcttatttcagcctttggttttcgagcattggcaagacctgaaccaccaaccaatgccttatcctctaaatttcatttgggcagcgaggcatacccaaactatttccgatttaacctgcaccgctttaccctccgattcggaacaacatctttggagcagtgtctcgttcaactatctaatagtcgaataaagccagtaatctactgtacttcgattaggcagcgagagcgtaattgttttcgccaattaattgtttgataaccgatatttaggagccagctaccaatgctccgcatgcttacataccatttcgtcttgccgtcaaatccatacaagcccgaattattatatcacaatatataatttgcaaagatattgtaagtttctgacatgaccaaacttttaaccgctttttaagttcaataaagtaaagttctcatagagtttgactattctactacagatatttagacgtaagtgaaccgtaaatggcttatattgaaaatgtacaaacagaacgatagagaagcttttcagaggtttcaatattacgtctgattaaaactattctcttcagttccttgtaagaaagaatgagaattccaaaataagaaaaggctgaatcagattactctgtcccagcctttgaatggttattctttaattcttcagattcaaatca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 ctgtgcaaacgatgcagtcattcccaataggaataatactgctgataataatagttttttcatacttgtaataattttgttagatagtgaataaaattttaatactaatatcaatagtgtttaagcgtctattttcatctggctggatatactttgctagattcatacccttgtacttttcacagcctaaaaataatcgtaccaatctttcaagctgctgaagaaaggaaatcaccatacgaagccaattacattgctgttgtcattgtgaataataccaatgacatatacaacattcttgatttctttaaataatccatagtcattcagtttttagttataattatattgtcaatcacatagctcgtcaaataatttaattagtttagtatatacttaattcctgcacacagtgcagctattttgcaaatatagcaatgcttctatgttcaagtgcaatattaaagatttttgttgaaatacgcaagtttttttataaaaaatatcatcagcactaaaaacaaaaaccattttatatggcacattggagttgtagaaagaaaataagtggttataaaagactatacagtaagacctctgtaaaacccattctgtaccaaaacgctgttactgataaccaacaaattgcatttgttatttcgttgttttgattgagttttgcagaggtctcaatagatgattctacatcaaccatcagttctttttagtggacctgcggagagtcgaactccggtccgcacaaggaaaccatacgctttctacatgcttatttcagcctttggttttcgagcattggcaagacctgaaccaccaaccaatgccttatcctctaaatttcatttgggcagcgaggcatacccaaactatttccgatttaacctgcaccgctttaccctccgattcggaacaacatctttggagcagtgtctcgttcaactatctaatagtcgaataaagccagtaatctactgtacttcgattaggcagcgagagcgtaattgttttcgccaattaattgtttgataaccgatatttaggagccagctaccaatgctccgcatgcttacataccatttcgtcttgccgtcaaatccatacaagcccgaattattatatcacaatatataatttgcaaagatattgtaagtttctgacatgaccaaacttttaaccgctttttaagttcaataaagtaaagttctcatagagtttgactattctactacagatatttagacgtaagtgaaccgtaaatggcttatattgaaaatgtacaaacagaacgatagagaagcttttcagaggtttcaatattacgtctgattaaaactattctcttcagttccttgtaagaaagaatgagaattccaaaataagaaaaggctgaatcagattactctgtcccagcctttgaatggttattctttaattcttcagattcaaatca Predict ORF larger than 30AA ================================================ Protein_Len: 45 Strand: + Start: 84 End: 218 ................................................................................... M V N K I L I L I S I V F K R L F S S G W I Y F A R F I P L Y F S Q P K N N R T N L S S C .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 58 Strand: + Start: 139 End: 312 .......................................................................................................................................... M A G Y T L L D S Y P C T F H S L K I I V P I F Q A A E E R K S P Y E A N Y I A V V I V N N T N D I Y N I L D F F K .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 41 Strand: + Start: 393 End: 515 ........................................................................................................................................................................................................................................................................................................................................................................................................ M L N S C T Q C S Y F A N I A M L L C S S A I L K I F V E I R K F F Y K K Y H Q H ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 31 Strand: + Start: 472 End: 564 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M L K Y A S F F I K N I I S T K N K N H F I W H I G V V E R K ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 44 Strand: + Start: 537 End: 668 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M A H W S C R K K I S G Y K R L Y S K T S V K P I L Y Q N A V T D N Q Q I A F V I S L F ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 60 Strand: + Start: 707 End: 973 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M N H Q F F L V D L R R V E L R S A Q G N H T L S T C L F Q P L V F E H W Q D L N H Q P M P Y P L N F I W A A R H T Q T ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 697 End: 1041 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M I L H Q P S V L F S G P A E S R T P V R T R K P Y A F Y M L I S A F G F R A L A R P E P P T N A L S S K F H L G S E A ........................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: + Start: 1051 End: 1146 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M F R S Q L P M L R M L T Y H F V L P S N P Y K P E L L Y H N I .................................................................................................................................................................................................................................................................................................................................. Protein_Len: 47 Strand: + Start: 1037 End: 1177 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M F D N R Y L G A S Y Q C S A C L H T I S S C R Q I H T S P N Y Y I T I Y N L Q R Y C K F L T ................................................................................................................................................................................................................................................................................................... Protein_Len: 35 Strand: - Start: 1283 End: 1387 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. I S F T C V S R Y L L K E S T E I N R R I L V I R K L E K Y S L I L M ................................................................................. Protein_Len: 48 Strand: - Start: 1192 End: 1335 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... G S K L N L L T F N E Y L K V I R S C I N L R L H V T F P K Y Q F H V F L V I S F S K L P K L M ..................................................................................................................................... Protein_Len: 41 Strand: - Start: 1088 End: 1210 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M G N R R A T L D M C A R I I I D C Y I I Q L S I T L K Q C S W V K L R K K L E M .................................................................................................................................................................................................................................................................. Protein_Len: 44 Strand: - Start: 990 End: 1121 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Q V E I L C R S R L Q K R W N I T Q Y G I N L L W S G I S R M S V Y W K T K G D F G Y M ........................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 37 Strand: - Start: 847 End: 957 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. G R F K M Q A A L C V W V I E S K V Q V A K G E S E S C C R Q L L T E N M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 48 Strand: - Start: 575 End: 718 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. L L S Y L L V E T F G M R Y W F A T V S L W C I A N T I E N N Q N L K A S T E I S S E V D V M M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 37 Strand: - Start: 465 End: 575 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L N K N F Y A L K K I F F I M L V L F L F W K I H C M P T T S L F Y T T M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 400 End: 585 ............................................................................................................................................................................................................................................................................................................................................................................................................... C V T C S N Q L Y L L A E I N L H L I L S K Q Q F V C T K K Y F I D D A S F V F V M K Y P V N S N Y F S F L H N Y F V M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: - Start: 235 End: 330 .......................................................................................................................................................................................................................................... W V F G I V N S N D N H I I G I V Y V V N K I E K F L G Y D N M .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 52 Strand: - Start: 83 End: 238 .................................................................................. I T F L I K I S I D I T N L R R N E D P Q I Y K A L N M G K Y K E C G L F L R V L R E L Q Q L F S I V M .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 38 Strand: - Start: 1 End: 114 Q A F S A T M G L L F L V A S L L L K K M S T I I K N S L S Y F K L V L I M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ctgtgcaaacgatgcagtcattcccaataggaataatactgctgataataatagttttttcatacttgtaataattttgttagatagtgaataaaattttaatactaatatcaatagtgtttaagcgtctattttcatctggctggatatactttgctagattcatacccttgtacttttcacagcctaaaaataatcgtaccaatctttcaagctgctgaagaaaggaaatcaccatacgaagccaattacattgctgttgtcattgtgaataataccaatgacatatacaacattcttgatttctttaaataatccatagtcattcagtttttagttataattatattgtcaatcacatagctcgtcaaataatttaattagtttagtatatacttaattcctgcacacagtgcagctattttgcaaatatagcaatgcttctatgttcaagtgcaatattaaagatttttgttgaaatacgcaagtttttttataaaaaatatcatcagcactaaaaacaaaaaccattttatatggcacattggagttgtagaaagaaaataagtggttataaaagactatacagtaagacctctgtaaaacccattctgtaccaaaacgctgttactgataaccaacaaattgcatttgttatttcgttgttttgattgagttttgcagaggtctcaatagatgattctacatcaaccatcagttctttttagtggacctgcggagagtcgaactccggtccgcacaaggaaaccatacgctttctacatgcttatttcagcctttggttttcgagcattggcaagacctgaaccaccaaccaatgccttatcctctaaatttcatttgggcagcgaggcatacccaaactatttccgatttaacctgcaccgctttaccctccgattcggaacaacatctttggagcagtgtctcgttcaactatctaatagtcgaataaagccagtaatctactgtacttcgattaggcagcgagagcgtaattgttttcgccaattaattgtttgataaccgatatttaggagccagctaccaatgctccgcatgcttacataccatttcgtcttgccgtcaaatccatacaagcccgaattattatatcacaatatataatttgcaaagatattgtaagtttctgacatgaccaaacttttaaccgctttttaagttcaataaagtaaagttctcatagagtttgactattctactacagatatttagacgtaagtgaaccgtaaatggcttatattgaaaatgtacaaacagaacgatagagaagcttttcagaggtttcaatattacgtctgattaaaactattctcttcagttccttgtaagaaagaatgagaattccaaaataagaaaaggctgaatcagattactctgtcccagcctttgaatggttattctttaattcttcagattcaaatca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 87 Start: 343 End: 372 ......................................................................................................................................................................................................................................................................................................................................................TTTGACGAGCTATGTGATTGACAATATAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 20 End: 49 ...................ATTCCCAATAGGAATAATACTGCTGATAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 82 Start: 1304 End: 1333 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAACCTCTGAAAAGCTTCTCTATCGT....................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 96 End: 125 ...............................................................................................CTTAAACACTATTGATATTAGTATTAAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 1128 End: 1157 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAAATTATATATTGTGATATAATAAT....................................................................................................................................................................................................................................................................................................................... Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ ctgtgcaaacgatgcagtcattcccaataggaataatactgctgataataatagttttttcatacttgtaataattttgttagatagtgaataaaattttaatactaatatcaatagtgtttaagcgtctattttcatctggctggatatactttgctagattcatacccttgtacttttcacagcctaaaaataatcgtaccaatctttcaagctgctgaagaaaggaaatcaccatacgaagccaattacattgctgttgtcattgtgaataataccaatgacatatacaacattcttgatttctttaaataatccatagtcattcagtttttagttataattatattgtcaatcacatagctcgtcaaataatttaattagtttagtatatacttaattcctgcacacagtgcagctattttgcaaatatagcaatgcttctatgttcaagtgcaatattaaagatttttgttgaaatacgcaagtttttttataaaaaatatcatcagcactaaaaacaaaaaccattttatatggcacattggagttgtagaaagaaaataagtggttataaaagactatacagtaagacctctgtaaaacccattctgtaccaaaacgctgttactgataaccaacaaattgcatttgttatttcgttgttttgattgagttttgcagaggtctcaatagatgattctacatcaaccatcagttctttttagtggacctgcggagagtcgaactccggtccgcacaaggaaaccatacgctttctacatgcttatttcagcctttggttttcgagcattggcaagacctgaaccaccaaccaatgccttatcctctaaatttcatttgggcagcgaggcatacccaaactatttccgatttaacctgcaccgctttaccctccgattcggaacaacatctttggagcagtgtctcgttcaactatctaatagtcgaataaagccagtaatctactgtacttcgattaggcagcgagagcgtaattgttttcgccaattaattgtttgataaccgatatttaggagccagctaccaatgctccgcatgcttacataccatttcgtcttgccgtcaaatccatacaagcccgaattattatatcacaatatataatttgcaaagatattgtaagtttctgacatgaccaaacttttaaccgctttttaagttcaataaagtaaagttctcatagagtttgactattctactacagatatttagacgtaagtgaaccgtaaatggcttatattgaaaatgtacaaacagaacgatagagaagcttttcagaggtttcaatattacgtctgattaaaactattctcttcagttccttgtaagaaagaatgagaattccaaaataagaaaaggctgaatcagattactctgtcccagcctttgaatggttattctttaattcttcagattcaaatca Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 76 HP_score: -10.0 Tail_Score: -2.79272 Start: 404 End: 418 Full_Region: GTATATACTTAATTC CTGCAC ACA GTGCAG CTATTTTGCAAATAT ...................................................................................................................................................................................................................................................................................................................................................................................................................CTGCACACAGTGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 82 HP_score: -3.4 Tail_Score: -5.65496 Start: 528 End: 540 Full_Region: tacaactccaatgtg ccat ataaa atgg tttttgtttttagtg ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ccatataaaatgg................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 90 HP_score: -8.4 Tail_Score: -5.093 Start: 1403 End: 1430 Full_Region: gaataaccattcaaa ggctgggacaga gtaa tctgattcagcc ttttcttattttgga ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ggctgggacagagtaatctgattcagcc...................................... Find igs database================================================ Query_seq: PI1568:PI1569|PI1568:PI1569:OmpA family protein:hypothetical protein:->->:1491104..1492571 1468 ctgtgcaaacgatgcagtcattcccaataggaataatactgctgataataatagttttttcatacttgtaataattttgttagatagtgaataaaattttaatactaatatcaatagtgtttaagcgtctattttcatctggctggatatactttgctagattcatacccttgtacttttcacagcctaaaaataatcgtaccaatctttcaagctgctgaagaaaggaaatcaccatacgaagccaattacattgctgttgtcattgtgaataataccaatgacatatacaacattcttgatttctttaaataatccatagtcattcagtttttagttataattatattgtcaatcacatagctcgtcaaataatttaattagtttagtatatacttaattcctgcacacagtgcagctattttgcaaatatagcaatgcttctatgttcaagtgcaatattaaagatttttgttgaaatacgcaagtttttttataaaaaatatcatcagcactaaaaacaaaaaccattttatatggcacattggagttgtagaaagaaaataagtggttataaaagactatacagtaagacctctgtaaaacccattctgtaccaaaacgctgttactgataaccaacaaattgcatttgttatttcgttgttttgattgagttttgcagaggtctcaatagatgattctacatcaaccatcagttctttttagtggacctgcggagagtcgaactccggtccgcacaaggaaaccatacgctttctacatgcttatttcagcctttggttttcgagcattggcaagacctgaaccaccaaccaatgccttatcctctaaatttcatttgggcagcgaggcatacccaaactatttccgatttaacctgcaccgctttaccctccgattcggaacaacatctttggagcagtgtctcgttcaactatctaatagtcgaataaagccagtaatctactgtacttcgattaggcagcgagagcgtaattgttttcgccaattaattgtttgataaccgatatttaggagccagctaccaatgctccgcatgcttacataccatttcgtcttgccgtcaaatccatacaagcccgaattattatatcacaatatataatttgcaaagatattgtaagtttctgacatgaccaaacttttaaccgctttttaagttcaataaagtaaagttctcatagagtttgactattctactacagatatttagacgtaagtgaaccgtaaatggcttatattgaaaatgtacaaacagaacgatagagaagcttttcagaggtttcaatattacgtctgattaaaactattctcttcagttccttgtaagaaagaatgagaattccaaaataagaaaaggctgaatcagattactctgtcccagcctttgaatggttattctttaattcttcagattcaaatca Intra-Species Hit: Count: 1 Min: 1 Max: 1468 Len: 1468 Subject: pint_PI1568_PI1569|OmpA family protein:hypothetical protein|POSITIVE:POSITIVE|[1491104,1492571]|1468 HSP 1 e-value: 0.0 bit: 2868.0 Len: 1468 Query Start:1 Query End:1468 Subject Strand: POSITIVE Subject Start: 1 Subject End: 1468 ctgtgcaaacgatgcagtcattcccaataggaataatactgctgataataatagttttttcatacttgtaataattttgttagatagtgaataaaattttaatactaatatcaatagtgtttaagcgtctattttcatctggctggatatactttgctagattcatacccttgtacttttcacagcctaaaaataatcgtaccaatctttcaagctgctgaagaaaggaaatcaccatacgaagccaattacattgctgttgtcattgtgaataataccaatgacatatacaacattcttgatttctttaaataatccatagtcattcagtttttagttataattatattgtcaatcacatagctcgtcaaataatttaattagtttagtatatacttaattcctgcacacagtgcagctattttgcaaatatagcaatgcttctatgttcaagtgcaatattaaagatttttgttgaaatacgcaagnnnnnnnataaaaaatatcatcagcactaaaaacaaaaaccattttatatggcacattggagttgtagaaagaaaataagtggttataaaagactatacagtaagacctctgtaaaacccattctgtaccaaaacgctgttactgataaccaacaaattgcatttgttatttcgttgttttgattgagttttgcagaggtctcaatagatgattctacatcaaccatcagttctttttagtggacctgcggagagtcgaactccggtccgcacaaggaaaccatacgctttctacatgcttatttcagcctttggttttcgagcattggcaagacctgaaccaccaaccaatgccttatcctctaaatttcatttgggcagcgaggcatacccaaactatttccgatttaacctgcaccgctttaccctccgattcggaacaacatctttggagcagtgtctcgttcaactatctaatagtcgaataaagccagtaatctactgtacttcgattaggcagcgagagcgtaattgttttcgccaattaattgtttgataaccgatatttaggagccagctaccaatgctccgcatgcttacataccatttcgtcttgccgtcaaatccatacaagcccgaattattatatcacaatatataatttgcaaagatattgtaagtttctgacatgaccaaacttttaaccgctttttaagttcaataaagtaaagttctcatagagtttgactattctactacagatatttagacgtaagtgaaccgtaaatggcttatattgaaaatgtacaaacagaacgatagagaagcttttcagaggtttcaatattacgtctgattaaaactattctcttcagttccttgtaagaaagaatgagaattccaaaataagaaaaggctgaatcagattactctgtcccagcctttgaatggttattctttaattcttcagattcaaatca ctgtgcaaacgatgcagtcattcccaataggaataatactgctgataataatagttttttcatacttgtaataattttgttagatagtgaataaaattttaatactaatatcaatagtgtttaagcgtctattttcatctggctggatatactttgctagattcatacccttgtacttttcacagcctaaaaataatcgtaccaatctttcaagctgctgaagaaaggaaatcaccatacgaagccaattacattgctgttgtcattgtgaataataccaatgacatatacaacattcttgatttctttaaataatccatagtcattcagtttttagttataattatattgtcaatcacatagctcgtcaaataatttaattagtttagtatatacttaattcctgcacacagtgcagctattttgcaaatatagcaatgcttctatgttcaagtgcaatattaaagatttttgttgaaatacgcaagtttttttataaaaaatatcatcagcactaaaaacaaaaaccattttatatggcacattggagttgtagaaagaaaataagtggttataaaagactatacagtaagacctctgtaaaacccattctgtaccaaaacgctgttactgataaccaacaaattgcatttgttatttcgttgttttgattgagttttgcagaggtctcaatagatgattctacatcaaccatcagttctttttagtggacctgcggagagtcgaactccggtccgcacaaggaaaccatacgctttctacatgcttatttcagcctttggttttcgagcattggcaagacctgaaccaccaaccaatgccttatcctctaaatttcatttgggcagcgaggcatacccaaactatttccgatttaacctgcaccgctttaccctccgattcggaacaacatctttggagcagtgtctcgttcaactatctaatagtcgaataaagccagtaatctactgtacttcgattaggcagcgagagcgtaattgttttcgccaattaattgtttgataaccgatatttaggagccagctaccaatgctccgcatgcttacataccatttcgtcttgccgtcaaatccatacaagcccgaattattatatcacaatatataatttgcaaagatattgtaagtttctgacatgaccaaacttttaaccgctttttaagttcaataaagtaaagttctcatagagtttgactattctactacagatatttagacgtaagtgaaccgtaaatggcttatattgaaaatgtacaaacagaacgatagagaagcttttcagaggtttcaatattacgtctgattaaaactattctcttcagttccttgtaagaaagaatgagaattccaaaataagaaaaggctgaatcagattactctgtcccagcctttgaatggttattctttaattcttcagattcaaatca Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ CUGUGCAAACGAUGCAGUCAUUCCCAAUAGGAAUAAUACUGCUGAUAAUAAUAGUUUUUUCAUACUUGUAAUAAUUUUGUUAGAUAGUGAAUAAAAUUUUAAUACUAAUAUCAAUAGUGUUUAAGCGUCUAUUUUCAUCUGGCUGGAUAUACUUUGCUAGAUUCAUACCCUUGUACUUUUCACAGCCUAAAAAUAAUCGUACCAAUCUUUCAAGCUGCUGAAGAAAGGAAAUCACCAUACGAAGCCAAUUACAUUGCUGUUGUCAUUGUGAAUAAUACCAAUGACAUAUACAACAUUCUUGAUUUCUUUAAAUAAUCCAUAGUCAUUCAGUUUUUAGUUAUAAUUAUAUUGUCAAUCACAUAGCUCGUCAAAUAAUUUAAUUAGUUUAGUAUAUACUUAAUUCCUGCACACAGUGCAGCUAUUUUGCAAAUAUAGCAAUGCUUCUAUGUUCAAGUGCAAUAUUAAAGAUUUUUGUUGAAAUACGCAAGUUUUUUUAUAAAAAAUAUCAUCAGCACUAAAAACAAAAACCAUUUUAUAUGGCACAUUGGAGUUGUAGAAAGAAAAUAAGUGGUUAUAAAAGACUAUACAGUAAGACCUCUGUAAAACCCAUUCUGUACCAAAACGCUGUUACUGAUAACCAACAAAUUGCAUUUGUUAUUUCGUUGUUUUGAUUGAGUUUUGCAGAGGUCUCAAUAGAUGAUUCUACAUCAACCAUCAGUUCUUUUUAGUGGACCUGCGGAGAGUCGAACUCCGGUCCGCACAAGGAAACCAUACGCUUUCUACAUGCUUAUUUCAGCCUUUGGUUUUCGAGCAUUGGCAAGACCUGAACCACCAACCAAUGCCUUAUCCUCUAAAUUUCAUUUGGGCAGCGAGGCAUACCCAAACUAUUUCCGAUUUAACCUGCACCGCUUUACCCUCCGAUUCGGAACAACAUCUUUGGAGCAGUGUCUCGUUCAACUAUCUAAUAGUCGAAUAAAGCCAGUAAUCUACUGUACUUCGAUUAGGCAGCGAGAGCGUAAUUGUUUUCGCCAAUUAAUUGUUUGAUAACCGAUAUUUAGGAGCCAGCUACCAAUGCUCCGCAUGCUUACAUACCAUUUCGUCUUGCCGUCAAAUCCAUACAAGCCCGAAUUAUUAUAUCACAAUAUAUAAUUUGCAAAGAUAUUGUAAGUUUCUGACAUGACCAAACUUUUAACCGCUUUUUAAGUUCAAUAAAGUAAAGUUCUCAUAGAGUUUGACUAUUCUACUACAGAUAUUUAGACGUAAGUGAACCGUAAAUGGCUUAUAUUGAAAAUGUACAAACAGAACGAUAGAGAAGCUUUUCAGAGGUUUCAAUAUUACGUCUGAUUAAAACUAUUCUCUUCAGUUCCUUGUAAGAAAGAAUGAGAAUUCCAAAAUAAGAAAAGGCUGAAUCAGAUUACUCUGUCCCAGCCUUUGAAUGGUUAUUCUUUAAUUCUUCAGAUUCAAAUCA ..((((((..(((((....(((((.....)))))(((((((.(((((.((..(((((((((((...(.(((((....))))).)..))))).)))))).......)).))))).)))))))...))))).......(((((((.(......)...)))))))........))))))..................((((.......((((.((((..((((((((((((((((((........(((..........)))..((((((((.(.......))))))))).............)))))))))).....(((....(((((((((..............((((((((..........(((((.................((((((.....(((.....((((((...)))))).....((((((((((((........)))))))....))))).....))).(((((((.((((.((....)).)))).)))))))...........))))))....(((((((........(((......(((((((((((((.......((((((..((((((((........(((((((((((((((.((.((.(((.((......)).))).......((((((((.((....)).)))).))))....)).)).))))))))))))))).....((((......)))).......)).))))))..(((((((...((((.......))))))))))).......))))))...))))))))).))))......)))..))))))))))))...((((((((...............((((((..(..(((((((...)))))))..)..)))))).........................(((..((.......((((...))))...........(((((((((.((.((((...((((.....(((((((((.(((..(((((...........)))))))).(((((((((....))))))))).......)))))))))....)))).....)))).)).)))...)))))))).)))..............))))))))................................)))))))).(((((((((.....))))))))).)))).)))))((((((((.....(((((................)))))......))))))))..............)))..((((((((((.((((((......(((((.(((((....(((....)))...)))))...))))).......)).))))...))))))))))............))))))))..)))).))))((((((((((((.(((........((((((((...((((....))))...))))))))...)))..))))))..))))))..))))....... (-340.91) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGAUUUGAAUCUGAAGAAUUAAAGAAUAACCAUUCAAAGGCUGGGACAGAGUAAUCUGAUUCAGCCUUUUCUUAUUUUGGAAUUCUCAUUCUUUCUUACAAGGAACUGAAGAGAAUAGUUUUAAUCAGACGUAAUAUUGAAACCUCUGAAAAGCUUCUCUAUCGUUCUGUUUGUACAUUUUCAAUAUAAGCCAUUUACGGUUCACUUACGUCUAAAUAUCUGUAGUAGAAUAGUCAAACUCUAUGAGAACUUUACUUUAUUGAACUUAAAAAGCGGUUAAAAGUUUGGUCAUGUCAGAAACUUACAAUAUCUUUGCAAAUUAUAUAUUGUGAUAUAAUAAUUCGGGCUUGUAUGGAUUUGACGGCAAGACGAAAUGGUAUGUAAGCAUGCGGAGCAUUGGUAGCUGGCUCCUAAAUAUCGGUUAUCAAACAAUUAAUUGGCGAAAACAAUUACGCUCUCGCUGCCUAAUCGAAGUACAGUAGAUUACUGGCUUUAUUCGACUAUUAGAUAGUUGAACGAGACACUGCUCCAAAGAUGUUGUUCCGAAUCGGAGGGUAAAGCGGUGCAGGUUAAAUCGGAAAUAGUUUGGGUAUGCCUCGCUGCCCAAAUGAAAUUUAGAGGAUAAGGCAUUGGUUGGUGGUUCAGGUCUUGCCAAUGCUCGAAAACCAAAGGCUGAAAUAAGCAUGUAGAAAGCGUAUGGUUUCCUUGUGCGGACCGGAGUUCGACUCUCCGCAGGUCCACUAAAAAGAACUGAUGGUUGAUGUAGAAUCAUCUAUUGAGACCUCUGCAAAACUCAAUCAAAACAACGAAAUAACAAAUGCAAUUUGUUGGUUAUCAGUAACAGCGUUUUGGUACAGAAUGGGUUUUACAGAGGUCUUACUGUAUAGUCUUUUAUAACCACUUAUUUUCUUUCUACAACUCCAAUGUGCCAUAUAAAAUGGUUUUUGUUUUUAGUGCUGAUGAUAUUUUUUAUAAAAAAACUUGCGUAUUUCAACAAAAAUCUUUAAUAUUGCACUUGAACAUAGAAGCAUUGCUAUAUUUGCAAAAUAGCUGCACUGUGUGCAGGAAUUAAGUAUAUACUAAACUAAUUAAAUUAUUUGACGAGCUAUGUGAUUGACAAUAUAAUUAUAACUAAAAACUGAAUGACUAUGGAUUAUUUAAAGAAAUCAAGAAUGUUGUAUAUGUCAUUGGUAUUAUUCACAAUGACAACAGCAAUGUAAUUGGCUUCGUAUGGUGAUUUCCUUUCUUCAGCAGCUUGAAAGAUUGGUACGAUUAUUUUUAGGCUGUGAAAAGUACAAGGGUAUGAAUCUAGCAAAGUAUAUCCAGCCAGAUGAAAAUAGACGCUUAAACACUAUUGAUAUUAGUAUUAAAAUUUUAUUCACUAUCUAACAAAAUUAUUACAAGUAUGAAAAAACUAUUAUUAUCAGCAGUAUUAUUCCUAUUGGGAAUGACUGCAUCGUUUGCACAG ....(((((..(((.(((((..(((((((......((((((((((.((((....)))).))))))))))..)))))))..))))))))........((((((((((.(((((((..((((((..(((((.((.........)).)))))))))))))))).)))))))..)))))....))))).....(((.....((((((((..((((((...((((((((((.(((((((((..(((...)))........(((((((.((((......((((((...((((.(((.(((((((..(.(((((...(((.....(((((((......))))))).....))).))))).)..)))))))....))).)))).........(((.(((((((.(((((((((((..........))))))))))).....((((((.......)))))).)))).)))))).)))))))))).)))))))....)))))..)))).)))).)))))).......(((......)))...)))))).))...))))))...))).(((((((((((......((..((((.(((((((((.((...)))))))))))...)))).))......(((((((((.((..........)).)))))))))(((((((((...(((......))).(((((((((.((((((((.........(((((((((.......))))...)))))....((((((...(((((((.......)))))))...(((((((((((.((((((((((((((((.......((((((((...))))))))((((....))))...))))))))......)))))))).)))))))))))........))))))..)))))..)))...))))))))).....................)))))))))....((.(((((((((((((((((((......(((((.((......)).(((((.((((((((((..((((.((((((..(((..(((((.........)))))))).)))))).))))..((((((...((((((.((..((((.....))))((((((.((((((((......))))))))........(((((.((....((((((((....(((..(((..(((((((...((((((((..........))))))))...)))))))..)))..)))....))))))))....))))))).))))))..)).))))))...((((((((((((((.((...((((...(.((......)).)...)))).)))))))...)))))))))..)))))).............)))))))))))))))........................))))))))))))).....))))))))))).)).((((((.....)))))).)))))))))))...... (-372.90) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 354 1100 1058 74 31 pint:PI1830|5end_conserved_hypothetical_protein_1769439..1769669_POSITIVE 352 777 733 132 88 pint:PI0938|5end_hypothetical_protein_869345..869575_POSITIVE 350 909 870 42 2 pint:PI1551|5end_HesA/MoeB/ThiF_family_protein_1467787..1468017_POSITIVE 334 1110 1065 201 141 pint:PI0932|5end_conserved_hypothetical_protein;_possible_hemin_receptor_863854..864084_POSITIVE 332 810 766 54 1 pint:PI1189|5end_conserved_hypothetical_protein_1107114..1107344_POSITIVE 332 776 734 59 13 pint:PI0723|5end_conserved_hypothetical_protein_656043..656273_POSITIVE 328 1107 1061 145 97 pint:PI1575|5end_LemA_protein_1501143..1501373_POSITIVE 327 449 403 62 15 pint:PI1524|5end_phosphatidylserine_decarboxylase_1445924..1446154_POSITIVE 323 847 804 205 155 pint:PI1251|5end_hypothetical_protein_1174740..1174970_POSITIVE 322 848 802 101 66 pint:PI1891|5end_hypothetical_protein_1835196..1835426_POSITIVE 322 826 786 66 21 pint:PI1812|5end_possible_alpha-amylase_1750759..1750989_POSITIVE 321 910 863 212 156 pint:PI0092|5end_regulatory_protein_RecX_89080..89310_POSITIVE 320 957 917 74 35 pint:PI1374|5end_tetraacyldisaccharide_4'-kinase_1294725..1294955_POSITIVE 319 920 871 149 86 pint:PI2084|5end_hypothetical_protein_2040387..2040617_POSITIVE 319 920 871 86 23 pint:PI2083|5end_hypothetical_protein_2040324..2040554_POSITIVE 319 917 872 158 103 pint:PI0604|5end_O-succinylbenzoic_acid--CoA_ligase_550825..551055_POSITIVE 319 1118 1071 177 132 pint:PI0260|5end_conjugative_transposon_protein,_TraJ_253023..253253_POSITIVE 318 1029 996 40 3 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 318 1031 996 37 3 pint:PI1829|5end_hypothetical_protein_1769255..1769485_POSITIVE 318 950 901 209 170 pint:PI1635|5end_hypothetical_protein_1553948..1554178_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 379 800 756 92 40 pint:PI1187|3end_conserved_hypothetical_protein_1107245..1107395_POSITIVE 363 910 862 100 50 pint:PI0225|3end_conserved_hypothetical_protein_222759..222909_POSITIVE 328 1107 1061 148 100 pint:PI1574|3end_conserved_hypothetical_protein_1501226..1501376_POSITIVE 319 1025 981 86 41 pint:PI1494|3end_conserved_hypothetical_protein_1413968..1414118_POSITIVE 319 917 872 94 39 pint:PI0603|3end_3-dehydroquinate_synthase_550841..550991_POSITIVE 319 1118 1071 117 72 pint:PI0259|3end_conserved_protein_found_in_conjugation,_TraI_253043..253193_POSITIVE 318 1029 996 143 106 pint:PI1905|3end_hypothetical_protein_1847854..1848004_POSITIVE 318 1031 996 141 107 pint:PI1829|3end_hypothetical_protein_1769439..1769589_POSITIVE 317 947 903 110 55 pint:PI0573|3end_aminopeptidase_C_(bleomycin_hydrolase)_519219..519369_POSITIVE 315 1028 989 118 77 pint:PI2131|3end_hypothetical_protein_2080868..2081018_POSITIVE 315 1109 1061 55 2 pint:PI0683|3end_hypothetical_protein_619797..619947_POSITIVE 315 1110 1064 144 87 pint:PI0349|3end_hypothetical_protein_323802..323952_POSITIVE 314 952 915 64 26 pint:PI1226|3end_hypothetical_protein_1148263..1148413_POSITIVE 313 930 902 75 44 pint:PI0261|3end_conjugative_transposon_protein,_TraK_254765..254915_POSITIVE 311 950 905 46 7 pint:PI0935|3end_collagenase,_protease_868320..868470_POSITIVE 310 759 717 132 83 pint:PI1230|3end_probable_metallo-beta-lactamase_family_protein_1152729..1152879_POSITIVE 307 637 592 76 38 pint:PI1567|3end_hypothetical_protein_1489521..1489671_POSITIVE 305 750 703 60 5 pint:PI0750|3end_zinc_protease_680633..680783_POSITIVE 304 1019 976 98 49 pint:PI0605|3end_chloromuconate_cycloisomerase_553026..553176_POSITIVE 303 879 834 138 91 pint:PI1789|3end_hypothetical_protein_1719037..1719187_POSITIVE