Origin IGS: tagacaatacaacaaaccgccttgacagctctgtcaaggcggtttgttgttaatgtgcgttcggtataagaaagcggttcaagtaggcatctcttaggtatttttggcattcttctctaatagaataatgagagtttttaggtttaactttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaacatactgacgtatagagtgttatgcgataattatgcctgtaaaaaatatttacactcttatcgccttcttttccctcataaaataacgtgagttcagtgtaagaatttaaggacgaagacagctctcttctttctgattatcagcatatcaaatcataatcaattctttattggcattgccttgataaataatatactgcttaattcttacatcaaactcacgtttgttattgtttcctttta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taaaaggaaacaataacaaacgtgagtttgatgtaagaattaagcagtatattatttatcaaggcaatgccaataaagaattgattatgatttgatatgctgataatcagaaagaagagagctgtcttcgtccttaaattcttacactgaactcacgttattttatgagggaaaagaaggcgataagagtgtaaatattttttacaggcataattatcgcataacactctatacgtcagtatgttacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcggttatcactttttaacggaattatctttacaaagttaaacctaaaaactctcattattctattagagaagaatgccaaaaatacctaagagatgcctacttgaaccgctttcttataccgaacgcacattaacaacaaaccgccttgacagagctgtcaaggcggtttgttgtattgtcta Mask Tandem Repeat Region ================================================ tagacaatacaacaaaccgccttgacagctctgtcaaggcggtttgttgttaatgtgcgttcggtataagaaagcggttcaagtaggcatctcttaggtatttttggcattcttctctaatagaataatgagagtttttaggtttaactttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaacatactgacgtatagagtgttatgcgataattatgcctgtaaaaaatatttacactcttatcgccttcttttccctcataaaataacgtgagttcagtgtaagaatttaaggacgaagacagctctcttctttctgattatcagcatatcaaatcataatcaattctttattggcattgccttgataaataatatactgcttaattcttacatcaaactcacgtttgttattgtttcctttta Find is-nt database================================================ Query_seq: PI1499:PI1500|PI1499:PI1500:hypothetical protein:hypothetical protein:->->:1420241..1420765 525 tagacaatacaacaaaccgccttgacagctctgtcaaggcggtttgttgttaatgtgcgttcggtataagaaagcggttcaagtaggcatctcttaggtatttttggcattcttctctaatagaataatgagagtttttaggtttaactttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaacatactgacgtatagagtgttatgcgataattatgcctgtaaaaaatatttacactcttatcgccttcttttccctcataaaataacgtgagttcagtgtaagaatttaaggacgaagacagctctcttctttctgattatcagcatatcaaatcataatcaattctttattggcattgccttgataaataatatactgcttaattcttacatcaaactcacgtttgttattgtttcctttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1499:PI1500|PI1499:PI1500:hypothetical protein:hypothetical protein:->->:1420241..1420765 525 tagacaatacaacaaaccgccttgacagctctgtcaaggcggtttgttgttaatgtgcgttcggtataagaaagcggttcaagtaggcatctcttaggtatttttggcattcttctctaatagaataatgagagtttttaggtttaactttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaacatactgacgtatagagtgttatgcgataattatgcctgtaaaaaatatttacactcttatcgccttcttttccctcataaaataacgtgagttcagtgtaagaatttaaggacgaagacagctctcttctttctgattatcagcatatcaaatcataatcaattctttattggcattgccttgataaataatatactgcttaattcttacatcaaactcacgtttgttattgtttcctttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1499:PI1500|PI1499:PI1500:hypothetical protein:hypothetical protein:->->:1420241..1420765 525 tagacaatacaacaaaccgccttgacagctctgtcaaggcggtttgttgttaatgtgcgttcggtataagaaagcggttcaagtaggcatctcttaggtatttttggcattcttctctaatagaataatgagagtttttaggtttaactttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaacatactgacgtatagagtgttatgcgataattatgcctgtaaaaaatatttacactcttatcgccttcttttccctcataaaataacgtgagttcagtgtaagaatttaaggacgaagacagctctcttctttctgattatcagcatatcaaatcataatcaattctttattggcattgccttgataaataatatactgcttaattcttacatcaaactcacgtttgttattgtttcctttta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tagacaatacaacaaaccgccttgacagctctgtcaaggcggtttgttgttaatgtgcgttcggtataagaaagcggttcaagtaggcatctcttaggtatttttggcattcttctctaatagaataatgagagtttttaggtttaactttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaacatactgacgtatagagtgttatgcgataattatgcctgtaaaaaatatttacactcttatcgccttcttttccctcataaaataacgtgagttcagtgtaagaatttaaggacgaagacagctctcttctttctgattatcagcatatcaaatcataatcaattctttattggcattgccttgataaataatatactgcttaattcttacatcaaactcacgtttgttattgtttcctttta Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 104 End: 370 ....................................................................................................... M A F F S N R I M R V F R F N F V K I I P L K S D N R A L T L R K R L F C D A K P T L L P C K T A A F G T Q N N R F C N ........................................................................................................................................................... Protein_Len: 36 Strand: + Start: 416 End: 523 ............................................................................................................................................................................................................................................................................................................................................................................................................................... M I I S I S N H N Q F F I G I A L I N N I L L N S Y I K L T F V I V S F .. Protein_Len: 59 Strand: - Start: 228 End: 404 ................................................................................................................................................................................................................................... A K V T C F L R K Q F A F C Y T K Y C V S T Y L T I R Y N H R Y F I N V S K D G E K G E Y F L T L E T Y S N L S S S M ......................................................................................................................... Protein_Len: 60 Strand: - Start: 97 End: 285 ................................................................................................ A N K E L L I I L T K L N L K T F I I G N F L S L R A K V N R F R S K Q S A F G V S K G H L V A A K P V C F L L N Q L M ................................................................................................................................................................................................................................................ Protein_Len: 36 Strand: - Start: 3 End: 110 .. V I C C V A K V A R D L R N T T L T R E T Y S L P E L L C R K P I K P M ............................................................................................................................................................................................................................................................................................................................................................................................................................... tagacaatacaacaaaccgccttgacagctctgtcaaggcggtttgttgttaatgtgcgttcggtataagaaagcggttcaagtaggcatctcttaggtatttttggcattcttctctaatagaataatgagagtttttaggtttaactttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaacatactgacgtatagagtgttatgcgataattatgcctgtaaaaaatatttacactcttatcgccttcttttccctcataaaataacgtgagttcagtgtaagaatttaaggacgaagacagctctcttctttctgattatcagcatatcaaatcataatcaattctttattggcattgccttgataaataatatactgcttaattcttacatcaaactcacgtttgttattgtttcctttta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tagacaatacaacaaaccgccttgacagctctgtcaaggcggtttgttgttaatgtgcgttcggtataagaaagcggttcaagtaggcatctcttaggtatttttggcattcttctctaatagaataatgagagtttttaggtttaactttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaacatactgacgtatagagtgttatgcgataattatgcctgtaaaaaatatttacactcttatcgccttcttttccctcataaaataacgtgagttcagtgtaagaatttaaggacgaagacagctctcttctttctgattatcagcatatcaaatcataatcaattctttattggcattgccttgataaataatatactgcttaattcttacatcaaactcacgtttgttattgtttcctttta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 100 HP_score: -17.7 Tail_Score: -4.50257 Start: 17 End: 42 Full_Region: cacattaacaacaaa ccgccttgaca gagc tgtcaaggcgg tttgttgtattgtct ................ccgccttgacagagctgtcaaggcgg................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 81 HP_score: -9.0 Tail_Score: -4.07568 Start: 202 End: 252 Full_Region: TTTGACATTGCGAAA GCGGCTCTTTTGCGATGCAAAACC TAC GCTTTTACCGTGCAAAACAGCCGC TTTTGGAACGCAAAA .........................................................................................................................................................................................................GCGGCTCTTTTGCGATGCAAAACCTACGCTTTTACCGTGCAAAACAGCCGC................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 75 HP_score: -9.0 Tail_Score: -3.59262 Start: 202 End: 252 Full_Region: ttttgcgttccaaaa gcggctgttttgcacggtaaaagc gta ggttttgcatcgcaaaagagccgc tttcgcaatgtcaaa .........................................................................................................................................................................................................gcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgc................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 45 HP_score: -3.8 Tail_Score: -2.55061 Start: 320 End: 336 Full_Region: TGCGATAATTATGCC TGTAAA AAATA TTTACA CTCTTATCGCCTTCT ...............................................................................................................................................................................................................................................................................................................................TGTAAAAAATATTTACA............................................................................................................................................................................................. TransTerm Strand: + Conf: 57 HP_score: -3.3 Tail_Score: -4.1021 Start: 397 End: 412 Full_Region: TAAGAATTTAAGGAC GAAGA CAGCTC TCTTC TTTCTGATTATCAGC ............................................................................................................................................................................................................................................................................................................................................................................................................GAAGACAGCTCTCTTC................................................................................................................. Find igs database================================================ Query_seq: PI1499:PI1500|PI1499:PI1500:hypothetical protein:hypothetical protein:->->:1420241..1420765 525 tagacaatacaacaaaccgccttgacagctctgtcaaggcggtttgttgttaatgtgcgttcggtataagaaagcggttcaagtaggcatctcttaggtatttttggcattcttctctaatagaataatgagagtttttaggtttaactttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaacatactgacgtatagagtgttatgcgataattatgcctgtaaaaaatatttacactcttatcgccttcttttccctcataaaataacgtgagttcagtgtaagaatttaaggacgaagacagctctcttctttctgattatcagcatatcaaatcataatcaattctttattggcattgccttgataaataatatactgcttaattcttacatcaaactcacgtttgttattgtttcctttta Intra-Species Hit: Count: 46 Min: 1 Max: 525 Len: 525 Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 0.0 bit: 1041.0 Len: 525 Query Start:1 Query End:525 Subject Strand: POSITIVE Subject Start: 1 Subject End: 525 tagacaatacaacaaaccgccttgacagctctgtcaaggcggtttgttgttaatgtgcgttcggtataagaaagcggttcaagtaggcatctcttaggtatttttggcattcttctctaatagaataatgagagtttttaggtttaactttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaacatactgacgtatagagtgttatgcgataattatgcctgtaaaaaatatttacactcttatcgccttcttttccctcataaaataacgtgagttcagtgtaagaatttaaggacgaagacagctctcttctttctgattatcagcatatcaaatcataatcaattctttattggcattgccttgataaataatatactgcttaattcttacatcaaactcacgtttgttattgtttcctttta tagacaatacaacaaaccgccttgacagctctgtcaaggcggtttgttgttaatgtgcgttcggtataagaaagcggttcaagtaggcatctcttaggtatttttggcattcttctctaatagaataatgagagtttttaggtttaactttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaacatactgacgtatagagtgttatgcgataattatgcctgtaaaaaatatttacactcttatcgccttcttttccctcataaaataacgtgagttcagtgtaagaatttaaggacgaagacagctctcttctttctgattatcagcatatcaaatcataatcaattctttattggcattgccttgataaataatatactgcttaattcttacatcaaactcacgtttgttattgtttcctttta HSP 2 e-value: 3.0E-10 bit: 67.9 Len: 42 Query Start:9 Query End:50 Subject Strand: NEGATIVE Subject Start: 9 Subject End: 50 ........acaacaaaccgccttgacagctctgtcaaggcggtttgttgt........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ........acaacaaaccgccttgacagagctgtcaaggcggtttgttgt........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 3.0E-66 bit: 254.0 Len: 140 Query Start:144 Query End:283 Subject Strand: POSITIVE Subject Start: 195 Subject End: 334 ...............................................................................................................................................ttaactttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaac.................................................................................................................................................................................................................................................. ...............................................................................................................................................ttaactttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataac.................................................................................................................................................................................................................................................. Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 1.0E-65 bit: 252.0 Len: 159 Query Start:124 Query End:282 Subject Strand: POSITIVE Subject Start: 144 Subject End: 302 ...........................................................................................................................aataatgagagtttttaggtttaactttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... ...........................................................................................................................aatagtgagagttttttggtttaatcttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 4.0E-65 bit: 250.0 Len: 134 Query Start:149 Query End:282 Subject Strand: POSITIVE Subject Start: 51 Subject End: 184 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-6 bit: 54.0 Len: 43 Query Start:409 Query End:451 Subject Strand: POSITIVE Subject Start: 308 Subject End: 350 ........................................................................................................................................................................................................................................................................................................................................................................................................................cttctttctgattatcagcatatcaaatcataatcaattcttt.......................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................cttctttctcattataagcatatcgaatcgtaatcaattcttt.......................................................................... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 6.0E-61 bit: 236.0 Len: 139 Query Start:144 Query End:282 Subject Strand: POSITIVE Subject Start: 475 Subject End: 613 ...............................................................................................................................................ttaactttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... ...............................................................................................................................................ttaactttgtaaagataattctgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 6.0E-58 bit: 226.0 Len: 150 Query Start:129 Query End:278 Subject Strand: POSITIVE Subject Start: 92 Subject End: 241 ................................................................................................................................tgagagtttttaggtttaactttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt....................................................................................................................................................................................................................................................... ................................................................................................................................tgagagattttctgtttaattttgtaaagataattctgttaaaaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt....................................................................................................................................................................................................................................................... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 2.0E-57 bit: 224.0 Len: 137 Query Start:148 Query End:284 Subject Strand: POSITIVE Subject Start: 59 Subject End: 195 ...................................................................................................................................................ctttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaaca................................................................................................................................................................................................................................................. ...................................................................................................................................................ctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaaca................................................................................................................................................................................................................................................. Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 4.0E-56 bit: 220.0 Len: 135 Query Start:148 Query End:282 Subject Strand: POSITIVE Subject Start: 309 Subject End: 443 ...................................................................................................................................................ctttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... ...................................................................................................................................................ctttgtaaagataatttctttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtcttgtaa................................................................................................................................................................................................................................................... Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 4.0E-56 bit: 220.0 Len: 143 Query Start:148 Query End:290 Subject Strand: NEGATIVE Subject Start: 243 Subject End: 385 ...................................................................................................................................................ctttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaacatactga........................................................................................................................................................................................................................................... ...................................................................................................................................................ctttgtaaagataattctcttaaaaagtgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccacttttggaacgcaaaacaataggttttgtaacacactga........................................................................................................................................................................................................................................... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 4.0E-56 bit: 220.0 Len: 131 Query Start:149 Query End:279 Subject Strand: NEGATIVE Subject Start: 96 Subject End: 226 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg...................................................................................................................................................................................................................................................... ....................................................................................................................................................tttgtaaagataattctgttaaaaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg...................................................................................................................................................................................................................................................... Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 1.0E-55 bit: 218.0 Len: 134 Query Start:149 Query End:282 Subject Strand: NEGATIVE Subject Start: 91 Subject End: 224 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... ....................................................................................................................................................tttgtaaagataattctgttaaaaactgataactgcgctttgacgttgcgaaagcggctcttttacgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 1.0E-55 bit: 218.0 Len: 134 Query Start:149 Query End:282 Subject Strand: NEGATIVE Subject Start: 148 Subject End: 281 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... ....................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgtaaaacaataggttttgtaa................................................................................................................................................................................................................................................... Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 9.0E-54 bit: 212.0 Len: 131 Query Start:149 Query End:279 Subject Strand: POSITIVE Subject Start: 115 Subject End: 245 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg...................................................................................................................................................................................................................................................... ....................................................................................................................................................tttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg...................................................................................................................................................................................................................................................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 4.0E-53 bit: 210.0 Len: 134 Query Start:149 Query End:282 Subject Strand: POSITIVE Subject Start: 147 Subject End: 280 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... ....................................................................................................................................................tttgtaaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 4.0E-53 bit: 210.0 Len: 134 Query Start:149 Query End:282 Subject Strand: POSITIVE Subject Start: 167 Subject End: 300 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... ....................................................................................................................................................tttgtaaagataattctcttaaaaattgataactgcgttttgacattgcgaaagcggctgttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 6.0E-52 bit: 206.0 Len: 136 Query Start:147 Query End:282 Subject Strand: POSITIVE Subject Start: 213 Subject End: 348 ..................................................................................................................................................actttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... ..................................................................................................................................................actttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 6.0E-52 bit: 206.0 Len: 136 Query Start:149 Query End:284 Subject Strand: NEGATIVE Subject Start: 105 Subject End: 240 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaaca................................................................................................................................................................................................................................................. ....................................................................................................................................................tttgtaaaaataattccgttaaaaagcgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataaca................................................................................................................................................................................................................................................. Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 1.0E-49 bit: 198.0 Len: 136 Query Start:149 Query End:284 Subject Strand: NEGATIVE Subject Start: 299 Subject End: 434 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaaca................................................................................................................................................................................................................................................. ....................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttgacgttgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaaca................................................................................................................................................................................................................................................. Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 5.0E-49 bit: 196.0 Len: 131 Query Start:149 Query End:279 Subject Strand: NEGATIVE Subject Start: 97 Subject End: 227 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg...................................................................................................................................................................................................................................................... ....................................................................................................................................................tttgtaaagataattctgttaaaaactgataactgcgttttgacattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttg...................................................................................................................................................................................................................................................... Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 3.0E-47 bit: 190.0 Len: 140 Query Start:143 Query End:282 Subject Strand: NEGATIVE Subject Start: 693 Subject End: 832 ..............................................................................................................................................tttaactttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... ..............................................................................................................................................tttaattttgtaaaaataattctgttaaaaagtgataactgtactttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatacaaaacaataggttttgtaa................................................................................................................................................................................................................................................... Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 3.0E-47 bit: 190.0 Len: 120 Query Start:148 Query End:267 Subject Strand: POSITIVE Subject Start: 256 Subject End: 375 ...................................................................................................................................................ctttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaa.................................................................................................................................................................................................................................................................. ...................................................................................................................................................ctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa.................................................................................................................................................................................................................................................................. Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 3.0E-47 bit: 190.0 Len: 128 Query Start:152 Query End:279 Subject Strand: POSITIVE Subject Start: 105 Subject End: 232 .......................................................................................................................................................gtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg...................................................................................................................................................................................................................................................... .......................................................................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg...................................................................................................................................................................................................................................................... Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 5.0E-46 bit: 186.0 Len: 134 Query Start:149 Query End:282 Subject Strand: POSITIVE Subject Start: 114 Subject End: 247 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... ....................................................................................................................................................tttgtaaagataatttctttgaaaaatggtaatttcgatttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 8.0E-45 bit: 182.0 Len: 136 Query Start:147 Query End:282 Subject Strand: NEGATIVE Subject Start: 383 Subject End: 518 ..................................................................................................................................................actttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... ..................................................................................................................................................actttgtaaagataattctgatgaaaaatgataatttcgatttggcattgcgaaagcggctgttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 1.0E-43 bit: 178.0 Len: 130 Query Start:149 Query End:278 Subject Strand: POSITIVE Subject Start: 142 Subject End: 271 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt....................................................................................................................................................................................................................................................... ....................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt....................................................................................................................................................................................................................................................... Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 1.0E-43 bit: 178.0 Len: 134 Query Start:149 Query End:282 Subject Strand: POSITIVE Subject Start: 186 Subject End: 319 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... ....................................................................................................................................................tttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaa................................................................................................................................................................................................................................................... Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 1.0E-37 bit: 159.0 Len: 136 Query Start:149 Query End:284 Subject Strand: NEGATIVE Subject Start: 405 Subject End: 540 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaaca................................................................................................................................................................................................................................................. ....................................................................................................................................................tttgtaaagataattacattgaaaattgataatttcgttttgacgttgcgaaagcggctgttttgcgaggtaaaacctacgcttttgccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaaca................................................................................................................................................................................................................................................. Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 5.0E-37 bit: 157.0 Len: 131 Query Start:149 Query End:279 Subject Strand: POSITIVE Subject Start: 92 Subject End: 222 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg...................................................................................................................................................................................................................................................... ....................................................................................................................................................tttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttg...................................................................................................................................................................................................................................................... Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 2.0E-36 bit: 155.0 Len: 134 Query Start:149 Query End:282 Subject Strand: POSITIVE Subject Start: 11 Subject End: 144 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... ....................................................................................................................................................tttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 1.0E-34 bit: 149.0 Len: 131 Query Start:148 Query End:278 Subject Strand: NEGATIVE Subject Start: 179 Subject End: 309 ...................................................................................................................................................ctttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt....................................................................................................................................................................................................................................................... ...................................................................................................................................................ctttgtaaagataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt....................................................................................................................................................................................................................................................... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 5.0E-34 bit: 147.0 Len: 134 Query Start:149 Query End:282 Subject Strand: POSITIVE Subject Start: 192 Subject End: 325 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... ....................................................................................................................................................tttgtaaagataatttcgttaaaaagtgataactgcactttgacgttgcgaaagcggctgttttacgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttaggacgcaaaacaatagattttgtaa................................................................................................................................................................................................................................................... Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 5.0E-34 bit: 147.0 Len: 134 Query Start:149 Query End:282 Subject Strand: POSITIVE Subject Start: 202 Subject End: 334 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... ....................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 5.0E-34 bit: 147.0 Len: 130 Query Start:149 Query End:278 Subject Strand: POSITIVE Subject Start: 216 Subject End: 345 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt....................................................................................................................................................................................................................................................... ....................................................................................................................................................tttgtaaagataatttcgctgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt....................................................................................................................................................................................................................................................... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 1.0E-31 bit: 139.0 Len: 150 Query Start:187 Query End:336 Subject Strand: NEGATIVE Subject Start: 274 Subject End: 423 ..........................................................................................................................................................................................tttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaacatactgacgtatagagtgttatgcgataattatgcctgtaaaaaatatttaca............................................................................................................................................................................................. ..........................................................................................................................................................................................tttgacgttgcgaaagcagctcttttgcaacgcaaaacctatgcttttaccgtgcaaaacagccgcttttaggatgcaaaacaataggttttgtaacgcactgatgattaggctgttatgcgaaaatttttcttgtgaaaaatatttaca............................................................................................................................................................................................. Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 1.0E-31 bit: 139.0 Len: 186 Query Start:151 Query End:336 Subject Strand: POSITIVE Subject Start: 190 Subject End: 375 ......................................................................................................................................................tgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaacatactgacgtatagagtgttatgcgataattatgcctgtaaaaaatatttaca............................................................................................................................................................................................. ......................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttaca............................................................................................................................................................................................. Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 1.0E-31 bit: 139.0 Len: 134 Query Start:149 Query End:282 Subject Strand: POSITIVE Subject Start: 80 Subject End: 213 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... ....................................................................................................................................................tttgtaaagataatttcgttgaaaagtggtaattgcgctttggcattgcgaaagcggctgttttgcgatgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 4.0E-31 bit: 137.0 Len: 141 Query Start:150 Query End:290 Subject Strand: POSITIVE Subject Start: 113 Subject End: 253 .....................................................................................................................................................ttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaacatactga........................................................................................................................................................................................................................................... .....................................................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactga........................................................................................................................................................................................................................................... Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 2.0E-27 bit: 125.0 Len: 131 Query Start:149 Query End:279 Subject Strand: NEGATIVE Subject Start: 346 Subject End: 476 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg...................................................................................................................................................................................................................................................... ....................................................................................................................................................tttgtaaagataacattgttaaaaagtgataactgcgctttgacattgcgaaagcgtaggttttgcgatgcaaaagcgccacttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttg...................................................................................................................................................................................................................................................... Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 4.0E-22 bit: 107.0 Len: 122 Query Start:149 Query End:270 Subject Strand: POSITIVE Subject Start: 227 Subject End: 348 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................................................................................................................... ....................................................................................................................................................tttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................................................................................................................................................................................................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 1.0E-19 bit: 99.6 Len: 150 Query Start:149 Query End:298 Subject Strand: NEGATIVE Subject Start: 171 Subject End: 320 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaacatactgacgtataga................................................................................................................................................................................................................................... ....................................................................................................................................................tttgtaaagataattcccttaaaaaaggataactgcgctttggcattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaacacgttttataacacgctgatgtataga................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-6 bit: 54.0 Len: 35 Query Start:199 Query End:233 Subject Strand: POSITIVE Subject Start: 236 Subject End: 270 ......................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt.................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt.................................................................................................................................................................................................................................................................................................... Subject: pint_PI0061_PI0062|hypothetical protein:endopeptidase|POSITIVE:POSITIVE|[60751, 61102]|352 HSP 1 e-value: 1.0E-19 bit: 99.6 Len: 118 Query Start:64 Query End:181 Subject Strand: NEGATIVE Subject Start: 7 Subject End: 124 ...............................................................gtataagaaagcggttcaagtaggcatctcttaggtatttttggcattcttctctaatagaataatgagagtttttaggtttaactttgtaaagataattccgttaaaaagtgataac........................................................................................................................................................................................................................................................................................................................................................ ...............................................................gtataagaaagcagttcaagcaggcatttctcagatgtttcaagtattcttcgctaataaaatagtgagagatttttagtttaactttgtaaagataattctgttaaaaagtgataac........................................................................................................................................................................................................................................................................................................................................................ Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 6.0E-18 bit: 93.7 Len: 131 Query Start:149 Query End:279 Subject Strand: POSITIVE Subject Start: 145 Subject End: 275 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg...................................................................................................................................................................................................................................................... ....................................................................................................................................................tttgtaaagataattcgttgaaaaaatgataatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttg...................................................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-6 bit: 54.0 Len: 35 Query Start:199 Query End:233 Subject Strand: NEGATIVE Subject Start: 195 Subject End: 229 ......................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt.................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt.................................................................................................................................................................................................................................................................................................... Subject: pint_PI1937_PI1938|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1891147,1891993]|847 HSP 1 e-value: 6.0E-15 bit: 83.8 Len: 138 Query Start:145 Query End:282 Subject Strand: POSITIVE Subject Start: 499 Subject End: 636 ................................................................................................................................................taactttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... ................................................................................................................................................taactttataaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaa................................................................................................................................................................................................................................................... Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 6.0E-15 bit: 83.8 Len: 130 Query Start:149 Query End:278 Subject Strand: NEGATIVE Subject Start: 179 Subject End: 308 ....................................................................................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt....................................................................................................................................................................................................................................................... ....................................................................................................................................................tttgtaaagataattttattaaaaagtggcaattgcgttttgacattgcaaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcgaaacaataggtttt....................................................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:199 Query End:234 Subject Strand: POSITIVE Subject Start: 224 Subject End: 259 ......................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt................................................................................................................................................................................................................................................................................................... ......................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt................................................................................................................................................................................................................................................................................................... Subject: pint_PI1324_PI1325|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1243086,1243554]|469 HSP 1 e-value: 5.0E-12 bit: 73.8 Len: 133 Query Start:150 Query End:282 Subject Strand: NEGATIVE Subject Start: 258 Subject End: 390 .....................................................................................................................................................ttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................................................................................................................................................................................................................................... .....................................................................................................................................................ttgtaaaaataattctgttaaaaagtgataactgcactttggcattgtaaaagcggctgttttgcatcgcaaaacagccgcttttggctggtaaaagagccgcttttacaatgtaaaacaataggttttgtaa................................................................................................................................................................................................................................................... Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 5.0E-12 bit: 73.8 Len: 105 Query Start:187 Query End:291 Subject Strand: NEGATIVE Subject Start: 220 Subject End: 324 ..........................................................................................................................................................................................tttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaacatactgac.......................................................................................................................................................................................................................................... ..........................................................................................................................................................................................tttggcattgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacacttttggaatgcaaaacaataggttttataatacactgac.......................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGACAAUACAACAAACCGCCUUGACAGCUCUGUCAAGGCGGUUUGUUGUUAAUGUGCGUUCGGUAUAAGAAAGCGGUUCAAGUAGGCAUCUCUUAGGUAUUUUUGGCAUUCUUCUCUAAUAGAAUAAUGAGAGUUUUUAGGUUUAACUUUGUAAAGAUAAUUCCGUUAAAAAGUGAUAACCGCGCUUUGACAUUGCGAAAGCGGCUCUUUUGCGAUGCAAAACCUACGCUUUUACCGUGCAAAACAGCCGCUUUUGGAACGCAAAACAAUAGGUUUUGUAACAUACUGACGUAUAGAGUGUUAUGCGAUAAUUAUGCCUGUAAAAAAUAUUUACACUCUUAUCGCCUUCUUUUCCCUCAUAAAAUAACGUGAGUUCAGUGUAAGAAUUUAAGGACGAAGACAGCUCUCUUCUUUCUGAUUAUCAGCAUAUCAAAUCAUAAUCAAUUCUUUAUUGGCAUUGCCUUGAUAAAUAAUAUACUGCUUAAUUCUUACAUCAAACUCACGUUUGUUAUUGUUUCCUUUUA ..((((..(((((((((((((((((((....)))))))))))))))))))...(((((((.((((((..((((((((((.......((((......((((.....(((....(((((............)))))....(((((((..(.((((((((........((((((..(((.....)))..))))))..(((....)))....)))))))).)..))))))).)))..)))))))).....)))))))))).....(((((((.....)))))))...)))))))))))))...))))..(((((((....(..((((((.....))))))..)))))))).............((((...((((((((((..(((((((((((..((((.(((((......))))).)))).......((((((((((..((...(((((.....)))))...))..))))))..........)))).)))))))))))..))))))))))..))))............ (-154.90) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAAGGAAACAAUAACAAACGUGAGUUUGAUGUAAGAAUUAAGCAGUAUAUUAUUUAUCAAGGCAAUGCCAAUAAAGAAUUGAUUAUGAUUUGAUAUGCUGAUAAUCAGAAAGAAGAGAGCUGUCUUCGUCCUUAAAUUCUUACACUGAACUCACGUUAUUUUAUGAGGGAAAAGAAGGCGAUAAGAGUGUAAAUAUUUUUUACAGGCAUAAUUAUCGCAUAACACUCUAUACGUCAGUAUGUUACAAAACCUAUUGUUUUGCGUUCCAAAAGCGGCUGUUUUGCACGGUAAAAGCGUAGGUUUUGCAUCGCAAAAGAGCCGCUUUCGCAAUGUCAAAGCGCGGUUAUCACUUUUUAACGGAAUUAUCUUUACAAAGUUAAACCUAAAAACUCUCAUUAUUCUAUUAGAGAAGAAUGCCAAAAAUACCUAAGAGAUGCCUACUUGAACCGCUUUCUUAUACCGAACGCACAUUAACAACAAACCGCCUUGACAGAGCUGUCAAGGCGGUUUGUUGUAUUGUCUA .....(....).......(((((((((((..(((((((((((((((((((((((...((((..(((((...........)))).)..)))).))))))))))...........(((((......)))))...))).))))))))))..))))))))))).........((...(((((((((....(((((((((.....))))).(((((..(((..((((....(((((.........(((..............((((((((((.(.(((((((((.((((((...((((((.(...).))))))...)))))).))))))))).).)))).))))))..((((...(((((.(((.(((....)))))).)))))..))))..........)))........)))))....))))..........)))...))))).))))....)))))))))...))....(.(((...(((((((((((((((((((....)))))))))))))))))))..)))).. (-159.73) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 985 250 201 71 22 pint:PI2002|5end_hypothetical_protein_1960662..1960892_POSITIVE 985 250 201 59 10 pint:PI1129|5end_hypothetical_protein_1055377..1055607_POSITIVE 961 250 201 202 153 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 952 249 201 231 183 pint:PI2003|5end_hypothetical_protein_1960823..1961053_POSITIVE 946 240 192 49 1 pint:PI2144|5end_hypothetical_protein_2091954..2092184_POSITIVE 938 260 211 81 32 pint:PI1346|5end_hypothetical_protein_1260814..1261044_POSITIVE 938 260 211 53 4 pint:PI0061|5end_hypothetical_protein_60500..60730_POSITIVE 938 260 211 53 4 pint:PI0004|5end_hypothetical_protein_6199..6429_POSITIVE 932 250 201 71 22 pint:PI1601|5end_hypothetical_protein_1530282..1530512_POSITIVE 914 260 211 81 32 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 914 260 211 207 158 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 911 250 201 79 30 pint:PI1168|5end_hypothetical_protein_1089696..1089926_POSITIVE 911 250 201 71 22 pint:PI1167|5end_hypothetical_protein_1089688..1089918_POSITIVE 909 250 201 71 22 pint:PI1829|5end_hypothetical_protein_1769255..1769485_POSITIVE 891 240 192 61 13 pint:PI1694|5end_hypothetical_protein_1609717..1609947_POSITIVE 890 270 223 48 1 pint:PI1905|5end_hypothetical_protein_1847628..1847858_POSITIVE 890 240 193 49 2 pint:PI1866|5end_hypothetical_protein_1811693..1811923_POSITIVE 887 250 201 71 22 pint:PI1567|5end_hypothetical_protein_1489229..1489459_POSITIVE 883 260 211 130 81 pint:PI0055|5end_hypothetical_protein_54815..55045_POSITIVE 872 240 192 61 13 pint:PI1934|5end_hypothetical_protein_1882363..1882593_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 985 250 201 54 5 pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE 985 250 201 113 64 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 962 240 191 143 94 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 922 240 192 143 95 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 908 270 221 133 84 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 894 248 201 151 104 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 883 260 211 64 15 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 872 240 192 143 95 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 861 250 201 127 78 pint:PI1356|3end_hypothetical_protein_1273340..1273490_POSITIVE 852 230 183 143 96 pint:PI1601|3end_hypothetical_protein_1530454..1530604_POSITIVE 844 279 231 55 7 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 844 279 231 49 1 pint:PI0669|3end_hypothetical_protein_611147..611297_POSITIVE 839 240 193 143 96 pint:PI0670|3end_hypothetical_protein_611280..611430_POSITIVE 832 240 194 147 101 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 807 240 191 143 94 pint:PI0004|3end_hypothetical_protein_6389..6539_POSITIVE 784 280 231 56 7 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE 732 218 171 121 74 pint:PI0200|3end_hypothetical_protein_191735..191885_POSITIVE 726 240 192 137 89 pint:PI0182|3end_hypothetical_protein_174277..174427_POSITIVE 724 230 183 143 96 pint:PI1076|3end_hypothetical_protein_999065..999215_POSITIVE 712 50 9 82 41 pint:PI1499|3end_hypothetical_protein_1420180..1420330_POSITIVE