Origin IGS: taagaaacaactatgttccgcacctcgtaatcgaggtgcggaacactgctttcaaagggtatatgataccgccaagaacgtagaacttacgttagtttgatataagaaagcaagttaaacaagcaatcctatagatattcttttacccactaatgaacttttacccaccaatgaaatagtgggagtttttccgcttaactttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgattagagagttaagcaacagttgaacttgcgaaaaatatttacacctttatcgtcttcttttctgtcgatttcgggaagcacgccacgccgcctatatccgaaataagggtgtaaaacatacaaagaaagccaccgtaacgaaaggtcgttgcggtggcttttgctttttaaaatagcttcagtggctgtaaaagcctta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taaggcttttacagccactgaagctattttaaaaagcaaaagccaccgcaacgacctttcgttacggtggctttctttgtatgttttacacccttatttcggatataggcggcgtggcgtgcttcccgaaatcgacagaaaagaagacgataaaggtgtaaatatttttcgcaagttcaactgttgcttaactctctaatcatcagagagttataaaacctattgttttgcgttccaaaaacggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaacggaattatctttacaaagttaagcggaaaaactcccactatttcattggtgggtaaaagttcattagtgggtaaaagaatatctataggattgcttgtttaacttgctttcttatatcaaactaacgtaagttctacgttcttggcggtatcatataccctttgaaagcagtgttccgcacctcgattacgaggtgcggaacatagttgtttctta Mask Tandem Repeat Region ================================================ taagaaacaactatgttccgcacctcgtaatcgaggtgcggaacactgctttcaaagggtatatgataccgccaagaacgtagaacttacgttagtttgatataagaaagcaagttaaacaagcaatcctatagatattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatagtgggagtttttccgcttaactttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgattagagagttaagcaacagttgaacttgcgaaaaatatttacacctttatcgtcttcttttctgtcgatttcgggaagcacgccacgccgcctatatccgaaataagggtgtaaaacatacaaagaaagccaccgtaacgaaaggtcgttgcggtggcttttgctttttaaaatagcttcagtggctgtaaaagcctta Find is-nt database================================================ Query_seq: PI1494:PI1495|PI1494:PI1495:conserved hypothetical protein:conserved hypothetical protein:->->:1414029..1414571 543 taagaaacaactatgttccgcacctcgtaatcgaggtgcggaacactgctttcaaagggtatatgataccgccaagaacgtagaacttacgttagtttgatataagaaagcaagttaaacaagcaatcctatagatattcttttacccactaatgaacttttacccaccaatgaaatagtgggagtttttccgcttaactttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgattagagagttaagcaacagttgaacttgcgaaaaatatttacacctttatcgtcttcttttctgtcgatttcgggaagcacgccacgccgcctatatccgaaataagggtgtaaaacatacaaagaaagccaccgtaacgaaaggtcgttgcggtggcttttgctttttaaaatagcttcagtggctgtaaaagcctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1494:PI1495|PI1494:PI1495:conserved hypothetical protein:conserved hypothetical protein:->->:1414029..1414571 543 taagaaacaactatgttccgcacctcgtaatcgaggtgcggaacactgctttcaaagggtatatgataccgccaagaacgtagaacttacgttagtttgatataagaaagcaagttaaacaagcaatcctatagatattcttttacccactaatgaacttttacccaccaatgaaatagtgggagtttttccgcttaactttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgattagagagttaagcaacagttgaacttgcgaaaaatatttacacctttatcgtcttcttttctgtcgatttcgggaagcacgccacgccgcctatatccgaaataagggtgtaaaacatacaaagaaagccaccgtaacgaaaggtcgttgcggtggcttttgctttttaaaatagcttcagtggctgtaaaagcctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1494:PI1495|PI1494:PI1495:conserved hypothetical protein:conserved hypothetical protein:->->:1414029..1414571 543 taagaaacaactatgttccgcacctcgtaatcgaggtgcggaacactgctttcaaagggtatatgataccgccaagaacgtagaacttacgttagtttgatataagaaagcaagttaaacaagcaatcctatagatattcttttacccactaatgaacttttacccaccaatgaaatagtgggagtttttccgcttaactttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgattagagagttaagcaacagttgaacttgcgaaaaatatttacacctttatcgtcttcttttctgtcgatttcgggaagcacgccacgccgcctatatccgaaataagggtgtaaaacatacaaagaaagccaccgtaacgaaaggtcgttgcggtggcttttgctttttaaaatagcttcagtggctgtaaaagcctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taagaaacaactatgttccgcacctcgtaatcgaggtgcggaacactgctttcaaagggtatatgataccgccaagaacgtagaacttacgttagtttgatataagaaagcaagttaaacaagcaatcctatagatattcttttacccactaatgaacttttacccaccaatgaaatagtgggagtttttccgcttaactttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgattagagagttaagcaacagttgaacttgcgaaaaatatttacacctttatcgtcttcttttctgtcgatttcgggaagcacgccacgccgcctatatccgaaataagggtgtaaaacatacaaagaaagccaccgtaacgaaaggtcgttgcggtggcttttgctttttaaaatagcttcagtggctgtaaaagcctta Predict ORF larger than 30AA ================================================ Protein_Len: 30 Strand: + Start: 232 End: 321 ....................................................................................................................................................................................................................................... M R F D I A K A A L L R C K T Y A F T V Q N S R F W N A K Q .............................................................................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 131 End: 364 .................................................................................................................................. M D I L L P T N E L L P T N E I V G V F P L N F V K I I P L K S D N C A L T L R K R L F C D A K P T L L P C K T A V F G ................................................................................................................................................................................... Protein_Len: 57 Strand: - Start: 348 End: 518 ........................................................................................................................................................................................................................................................................................................................................................... L T L C C N F K R F I N V G K D D E K R D I E P L V G R R R Y G F Y P H L V Y L S L W R L S L D N R H S K S K L M ......................... Protein_Len: 60 Strand: - Start: 118 End: 321 ..................................................................................................................... K G V L S S K G V L S I T P T K G S L K T F I I G N F L S L Q A K V N R F R S K Q S A F G V S K G H L V A T K P V C F M .............................................................................................................................................................................................................................. taagaaacaactatgttccgcacctcgtaatcgaggtgcggaacactgctttcaaagggtatatgataccgccaagaacgtagaacttacgttagtttgatataagaaagcaagttaaacaagcaatcctatagatattcttttacccactaatgaacttttacccaccaatgaaatagtgggagtttttccgcttaactttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgattagagagttaagcaacagttgaacttgcgaaaaatatttacacctttatcgtcttcttttctgtcgatttcgggaagcacgccacgccgcctatatccgaaataagggtgtaaaacatacaaagaaagccaccgtaacgaaaggtcgttgcggtggcttttgctttttaaaatagcttcagtggctgtaaaagcctta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taagaaacaactatgttccgcacctcgtaatcgaggtgcggaacactgctttcaaagggtatatgataccgccaagaacgtagaacttacgttagtttgatataagaaagcaagttaaacaagcaatcctatagatattcttttacccactaatgaacttttacccaccaatgaaatagtgggagtttttccgcttaactttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgattagagagttaagcaacagttgaacttgcgaaaaatatttacacctttatcgtcttcttttctgtcgatttcgggaagcacgccacgccgcctatatccgaaataagggtgtaaaacatacaaagaaagccaccgtaacgaaaggtcgttgcggtggcttttgctttttaaaatagcttcagtggctgtaaaagcctta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 43 HP_score: -3.5 Tail_Score: -2.63289 Start: 164 End: 183 Full_Region: ACTAATGAACTTTTA CCCACCA ATGAAA TAGTGGG AGTTTTTCCGCTTAA ...................................................................................................................................................................CCCACCAATGAAATAGTGGG........................................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: + Conf: 79 HP_score: -6.7 Tail_Score: -4.56597 Start: 254 End: 302 Full_Region: TTGACATTGCGAAAG CGGCTCTTTTGCGATGCAAAACC TAC GCTTTTACCGTGCAAAACAGCCG TTTTTGGAACGCAAA .............................................................................................................................................................................................................................................................CGGCTCTTTTGCGATGCAAAACCTACGCTTTTACCGTGCAAAACAGCCG................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 100 HP_score: -18.7 Tail_Score: -4.77757 Start: 473 End: 502 Full_Region: AAACATACAAAGAAA GCCACCGTAACGA AAGG TCGTTGCGGTGGC TTTTGCTTTTTAAAA ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCGTAACGAAAGGTCGTTGCGGTGGC......................................... TransTerm Strand: - Conf: 100 HP_score: -16.5 Tail_Score: -4.69487 Start: 473 End: 502 Full_Region: ttttaaaaagcaaaa gccaccgcaacga cctt tcgttacggtggc tttctttgtatgttt ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gccaccgcaacgacctttcgttacggtggc......................................... Find igs database================================================ Query_seq: PI1494:PI1495|PI1494:PI1495:conserved hypothetical protein:conserved hypothetical protein:->->:1414029..1414571 543 taagaaacaactatgttccgcacctcgtaatcgaggtgcggaacactgctttcaaagggtatatgataccgccaagaacgtagaacttacgttagtttgatataagaaagcaagttaaacaagcaatcctatagatattcttttacccactaatgaacttttacccaccaatgaaatagtgggagtttttccgcttaactttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgattagagagttaagcaacagttgaacttgcgaaaaatatttacacctttatcgtcttcttttctgtcgatttcgggaagcacgccacgccgcctatatccgaaataagggtgtaaaacatacaaagaaagccaccgtaacgaaaggtcgttgcggtggcttttgctttttaaaatagcttcagtggctgtaaaagcctta Intra-Species Hit: Count: 49 Min: 1 Max: 543 Len: 543 Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 0.0 bit: 1076.0 Len: 543 Query Start:1 Query End:543 Subject Strand: POSITIVE Subject Start: 1 Subject End: 543 taagaaacaactatgttccgcacctcgtaatcgaggtgcggaacactgctttcaaagggtatatgataccgccaagaacgtagaacttacgttagtttgatataagaaagcaagttaaacaagcaatcctatagatattcttttacccactaatgaacttttacccaccaatgaaatagtgggagtttttccgcttaactttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgattagagagttaagcaacagttgaacttgcgaaaaatatttacacctttatcgtcttcttttctgtcgatttcgggaagcacgccacgccgcctatatccgaaataagggtgtaaaacatacaaagaaagccaccgtaacgaaaggtcgttgcggtggcttttgctttttaaaatagcttcagtggctgtaaaagcctta taagaaacaactatgttccgcacctcgtaatcgaggtgcggaacactgctttcaaagggtatatgataccgccaagaacgtagaacttacgttagtttgatataagaaagcaagttaaacaagcaatcctatagatattcttttacccactaatgaacttttacccaccaatgaaatagtgggagtttttccgcttaactttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgattagagagttaagcaacagttgaacttgcgaaaaatatttacacctttatcgtcttcttttctgtcgatttcgggaagcacgccacgccgcctatatccgaaataagggtgtaaaacatacaaagaaagccaccgtaacgaaaggtcgttgcggtggcttttgctttttaaaatagcttcagtggctgtaaaagcctta Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 5.0E-68 bit: 260.0 Len: 195 Query Start:200 Query End:394 Subject Strand: POSITIVE Subject Start: 51 Subject End: 245 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgattagagagttaagcaacagttgaacttgcgaaaaatatttacacctttat..................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacacttttat..................................................................................................................................................... Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 3.0E-66 bit: 254.0 Len: 140 Query Start:195 Query End:334 Subject Strand: POSITIVE Subject Start: 144 Subject End: 283 ..................................................................................................................................................................................................ttaactttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataac................................................................................................................................................................................................................. ..................................................................................................................................................................................................ttaactttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaac................................................................................................................................................................................................................. Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 3.0E-63 bit: 244.0 Len: 223 Query Start:172 Query End:394 Subject Strand: POSITIVE Subject Start: 84 Subject End: 306 ...........................................................................................................................................................................tgaaatagtgggagtttttccgcttaactttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgattagagagttaagcaacagttgaacttgcgaaaaatatttacacctttat..................................................................................................................................................... ...........................................................................................................................................................................tgaaacagtgagagattttctgtttaattttgtaaagataattctgttaaaaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttataatgcgttgatggttagatagttaagtaataattatctttacgaaaaatatttacacctttat..................................................................................................................................................... Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 7.0E-61 bit: 236.0 Len: 195 Query Start:200 Query End:394 Subject Strand: NEGATIVE Subject Start: 30 Subject End: 224 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgattagagagttaagcaacagttgaacttgcgaaaaatatttacacctttat..................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataattctgttaaaaactgataactgcgctttgacgttgcgaaagcggctcttttacgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgtaatacgttgatgattagatagttaagcaatagatatatgtgcgaaaaatatttacacatttat..................................................................................................................................................... Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 3.0E-60 bit: 234.0 Len: 158 Query Start:172 Query End:329 Subject Strand: POSITIVE Subject Start: 141 Subject End: 298 ...........................................................................................................................................................................tgaaatagtgggagtttttccgcttaactttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... ...........................................................................................................................................................................tgaaatagtgagagttttttggtttaatcttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 3.0E-60 bit: 234.0 Len: 142 Query Start:188 Query End:329 Subject Strand: POSITIVE Subject Start: 468 Subject End: 609 ...........................................................................................................................................................................................tttccgcttaactttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... ...........................................................................................................................................................................................tttcggcttaactttgtaaagataattctgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaataggtttt...................................................................................................................................................................................................................... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 1.0E-56 bit: 222.0 Len: 208 Query Start:199 Query End:406 Subject Strand: POSITIVE Subject Start: 59 Subject End: 266 ......................................................................................................................................................................................................ctttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgattagagagttaagcaacagttgaacttgcgaaaaatatttacacctttatcgtcttcttttc......................................................................................................................................... ......................................................................................................................................................................................................ctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttacacgtctatcatctttttttc......................................................................................................................................... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 2.0E-55 bit: 218.0 Len: 130 Query Start:200 Query End:329 Subject Strand: NEGATIVE Subject Start: 97 Subject End: 226 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataattctgttaaaaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 6.0E-55 bit: 216.0 Len: 133 Query Start:194 Query End:326 Subject Strand: POSITIVE Subject Start: 304 Subject End: 436 .................................................................................................................................................................................................cttaactttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggt......................................................................................................................................................................................................................... .................................................................................................................................................................................................cttagctttgtaaagataatttctttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggt......................................................................................................................................................................................................................... Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 6.0E-55 bit: 216.0 Len: 149 Query Start:199 Query End:347 Subject Strand: NEGATIVE Subject Start: 237 Subject End: 385 ......................................................................................................................................................................................................ctttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgatta.................................................................................................................................................................................................... ......................................................................................................................................................................................................ctttgtaaagataattctcttaaaaagtgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccacttttggaacgcaaaacaataggttttgtaacacactgatgatta.................................................................................................................................................................................................... Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 1.0E-53 bit: 212.0 Len: 135 Query Start:200 Query End:334 Subject Strand: NEGATIVE Subject Start: 106 Subject End: 240 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataac................................................................................................................................................................................................................. .......................................................................................................................................................................................................tttgtaaaaataattccgttaaaaagcgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataac................................................................................................................................................................................................................. Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 4.0E-53 bit: 210.0 Len: 130 Query Start:200 Query End:329 Subject Strand: NEGATIVE Subject Start: 152 Subject End: 281 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgtaaaacaataggtttt...................................................................................................................................................................................................................... Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 4.0E-53 bit: 210.0 Len: 130 Query Start:200 Query End:329 Subject Strand: POSITIVE Subject Start: 115 Subject End: 244 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggtttt...................................................................................................................................................................................................................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 9.0E-51 bit: 202.0 Len: 130 Query Start:200 Query End:329 Subject Strand: POSITIVE Subject Start: 147 Subject End: 276 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 9.0E-51 bit: 202.0 Len: 130 Query Start:200 Query End:329 Subject Strand: POSITIVE Subject Start: 167 Subject End: 296 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataattctcttaaaaattgataactgcgttttgacattgcgaaagcggctgttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 44 Query Start:102 Query End:145 Subject Strand: POSITIVE Subject Start: 82 Subject End: 125 .....................................................................................................ataagaaagcaagttaaacaagcaatcctatagatattctttta.............................................................................................................................................................................................................................................................................................................................................................................................................. .....................................................................................................ataagaaagcaggttaggcaagcaatcctgtagatattctttta.............................................................................................................................................................................................................................................................................................................................................................................................................. Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 1.0E-49 bit: 198.0 Len: 132 Query Start:198 Query End:329 Subject Strand: POSITIVE Subject Start: 213 Subject End: 344 .....................................................................................................................................................................................................actttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... .....................................................................................................................................................................................................actttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt...................................................................................................................................................................................................................... Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 2.0E-48 bit: 194.0 Len: 130 Query Start:200 Query End:329 Subject Strand: NEGATIVE Subject Start: 98 Subject End: 227 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataattctgttaaaaactgataactgcgttttgacattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 2.0E-48 bit: 194.0 Len: 130 Query Start:200 Query End:329 Subject Strand: NEGATIVE Subject Start: 305 Subject End: 434 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttgacgttgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt...................................................................................................................................................................................................................... Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 4.0E-47 bit: 190.0 Len: 120 Query Start:199 Query End:318 Subject Strand: POSITIVE Subject Start: 256 Subject End: 375 ......................................................................................................................................................................................................ctttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaa................................................................................................................................................................................................................................. ......................................................................................................................................................................................................ctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa................................................................................................................................................................................................................................. Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 127 Query Start:203 Query End:329 Subject Strand: POSITIVE Subject Start: 105 Subject End: 231 ..........................................................................................................................................................................................................gtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... ..........................................................................................................................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt...................................................................................................................................................................................................................... Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 5.0E-46 bit: 186.0 Len: 134 Query Start:200 Query End:333 Subject Strand: POSITIVE Subject Start: 142 Subject End: 275 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataa.................................................................................................................................................................................................................. .......................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataa.................................................................................................................................................................................................................. Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 3.0E-44 bit: 180.0 Len: 135 Query Start:195 Query End:329 Subject Strand: NEGATIVE Subject Start: 697 Subject End: 831 ..................................................................................................................................................................................................ttaactttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... ..................................................................................................................................................................................................ttaattttgtaaaaataattctgttaaaaagtgataactgtactttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatacaaaacaataggtttt...................................................................................................................................................................................................................... Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 1.0E-43 bit: 178.0 Len: 130 Query Start:200 Query End:329 Subject Strand: POSITIVE Subject Start: 114 Subject End: 243 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataatttctttgaaaaatggtaatttcgatttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 2.0E-42 bit: 174.0 Len: 132 Query Start:198 Query End:329 Subject Strand: NEGATIVE Subject Start: 387 Subject End: 518 .....................................................................................................................................................................................................actttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... .....................................................................................................................................................................................................actttgtaaagataattctgatgaaaaatgataatttcgatttggcattgcgaaagcggctgttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt...................................................................................................................................................................................................................... Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 3.0E-41 bit: 170.0 Len: 130 Query Start:200 Query End:329 Subject Strand: POSITIVE Subject Start: 186 Subject End: 315 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggtttt...................................................................................................................................................................................................................... Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 3.0E-41 bit: 170.0 Len: 130 Query Start:200 Query End:329 Subject Strand: NEGATIVE Subject Start: 88 Subject End: 217 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagattatttctttagaaaatggtaatttcgatttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt...................................................................................................................................................................................................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 2.0E-36 bit: 155.0 Len: 130 Query Start:200 Query End:329 Subject Strand: POSITIVE Subject Start: 92 Subject End: 221 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggtttt...................................................................................................................................................................................................................... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 3.0E-35 bit: 151.0 Len: 132 Query Start:199 Query End:330 Subject Strand: NEGATIVE Subject Start: 178 Subject End: 309 ......................................................................................................................................................................................................ctttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttta..................................................................................................................................................................................................................... ......................................................................................................................................................................................................ctttgtaaagataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttta..................................................................................................................................................................................................................... Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 1.0E-34 bit: 149.0 Len: 135 Query Start:200 Query End:334 Subject Strand: NEGATIVE Subject Start: 406 Subject End: 540 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataac................................................................................................................................................................................................................. .......................................................................................................................................................................................................tttgtaaagataattacattgaaaattgataatttcgttttgacgttgcgaaagcggctgttttgcgaggtaaaacctacgcttttgccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaac................................................................................................................................................................................................................. Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 1.0E-34 bit: 149.0 Len: 131 Query Start:200 Query End:330 Subject Strand: POSITIVE Subject Start: 216 Subject End: 346 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttta..................................................................................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataatttcgctgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttta..................................................................................................................................................................................................................... Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 5.0E-34 bit: 147.0 Len: 130 Query Start:200 Query End:329 Subject Strand: POSITIVE Subject Start: 11 Subject End: 140 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggtttt...................................................................................................................................................................................................................... Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 2.0E-33 bit: 145.0 Len: 145 Query Start:201 Query End:345 Subject Strand: POSITIVE Subject Start: 113 Subject End: 257 ........................................................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgat...................................................................................................................................................................................................... ........................................................................................................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgat...................................................................................................................................................................................................... Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 3.0E-32 bit: 141.0 Len: 134 Query Start:200 Query End:333 Subject Strand: POSITIVE Subject Start: 156 Subject End: 289 .......................................................................................................................................................................................................tttgtaaagataattccgttaa-aaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataa.................................................................................................................................................................................................................. .......................................................................................................................................................................................................tttgtaaagataattc-gttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataa.................................................................................................................................................................................................................. Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 1.0E-31 bit: 139.0 Len: 130 Query Start:200 Query End:329 Subject Strand: POSITIVE Subject Start: 192 Subject End: 321 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataatttcgttaaaaagtgataactgcactttgacgttgcgaaagcggctgttttacgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttaggacgcaaaacaatagatttt...................................................................................................................................................................................................................... Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 1.0E-31 bit: 139.0 Len: 130 Query Start:200 Query End:329 Subject Strand: POSITIVE Subject Start: 202 Subject End: 330 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggct-gtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt...................................................................................................................................................................................................................... Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 7.0E-30 bit: 133.0 Len: 191 Query Start:202 Query End:392 Subject Strand: POSITIVE Subject Start: 190 Subject End: 380 .........................................................................................................................................................................................................tgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgattagagagttaagcaacagttgaacttgcgaaaaatatttacaccttt....................................................................................................................................................... .........................................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatcttt....................................................................................................................................................... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 3.0E-29 bit: 131.0 Len: 149 Query Start:200 Query End:348 Subject Strand: NEGATIVE Subject Start: 313 Subject End: 461 .......................................................................................................................................................................................................tttgtaaagataattccgttaa-aaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgattag................................................................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataattc-gttaagaaaacgataatttcgatttgacgttgcgaaagcagctcttttgcaacgcaaaacctatgcttttaccgtgcaaaacagccgcttttaggatgcaaaacaataggttttgtaacgcactgatgattag................................................................................................................................................................................................... Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 3.0E-29 bit: 131.0 Len: 130 Query Start:200 Query End:329 Subject Strand: NEGATIVE Subject Start: 41 Subject End: 170 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataattctgatgaaaaacaataatttcgttttgacgttgcgaaagcggctcttttacaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggtttt...................................................................................................................................................................................................................... Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 3.0E-29 bit: 131.0 Len: 130 Query Start:200 Query End:329 Subject Strand: POSITIVE Subject Start: 80 Subject End: 209 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataatttcgttgaaaagtggtaattgcgctttggcattgcgaaagcggctgttttgcgatgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt...................................................................................................................................................................................................................... Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 7.0E-27 bit: 123.0 Len: 130 Query Start:200 Query End:329 Subject Strand: NEGATIVE Subject Start: 347 Subject End: 476 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataacattgttaaaaagtgataactgcgctttgacattgcgaaagcgtaggttttgcgatgcaaaagcgccacttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt...................................................................................................................................................................................................................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 7.0E-24 bit: 113.0 Len: 189 Query Start:200 Query End:388 Subject Strand: NEGATIVE Subject Start: 132 Subject End: 320 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgattagagagttaagcaacagttgaacttgcgaaaaatatttacac........................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataattcccttaaaaaaggataactgcgctttggcattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaacacgttttataacacgctgatgtatagatagttaccgaacagttatgcttgtgaaaaatatttacac........................................................................................................................................................... HSP 2 e-value: 5.0E-6 bit: 54.0 Len: 35 Query Start:250 Query End:284 Subject Strand: POSITIVE Subject Start: 236 Subject End: 270 .........................................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt................................................................................................................................................................................................................................................................... .........................................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt................................................................................................................................................................................................................................................................... Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 1.0E-22 bit: 109.0 Len: 135 Query Start:200 Query End:334 Subject Strand: POSITIVE Subject Start: 227 Subject End: 361 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataac................................................................................................................................................................................................................. .......................................................................................................................................................................................................tttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaacatattttataac................................................................................................................................................................................................................. Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 130 Query Start:200 Query End:329 Subject Strand: POSITIVE Subject Start: 145 Subject End: 274 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataattcgttgaaaaaatgataatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt...................................................................................................................................................................................................................... HSP 2 e-value: 5.0E-6 bit: 54.0 Len: 35 Query Start:250 Query End:284 Subject Strand: NEGATIVE Subject Start: 195 Subject End: 229 .........................................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt................................................................................................................................................................................................................................................................... .........................................................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt................................................................................................................................................................................................................................................................... Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 131 Query Start:200 Query End:330 Subject Strand: NEGATIVE Subject Start: 178 Subject End: 308 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttta..................................................................................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataattttattaaaaagtggcaattgcgttttgacattgcaaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcgaaacaataggtttta..................................................................................................................................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:250 Query End:285 Subject Strand: POSITIVE Subject Start: 224 Subject End: 259 .........................................................................................................................................................................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt.................................................................................................................................................................................................................................................................. .........................................................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt.................................................................................................................................................................................................................................................................. Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 4.0E-13 bit: 77.8 Len: 135 Query Start:200 Query End:334 Subject Strand: NEGATIVE Subject Start: 169 Subject End: 303 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataac................................................................................................................................................................................................................. .......................................................................................................................................................................................................tttgtaaagataattcggagggaaaatgataatttcgatttgacgttgcgaaagcgtatgttttgcgatgcaaaagagccgcttttaccgtgcaaaacctacgcttttacaatgcaaaacaataggttttataac................................................................................................................................................................................................................. Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 130 Query Start:200 Query End:329 Subject Strand: NEGATIVE Subject Start: 57 Subject End: 186 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... .......................................................................................................................................................................................................tttgtaaagataattccgacgaaaaacggtaatttcgatttggcgttgcgaaagcggctgttttgcagcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt...................................................................................................................................................................................................................... Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 134 Query Start:200 Query End:333 Subject Strand: NEGATIVE Subject Start: 229 Subject End: 361 .......................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataa.................................................................................................................................................................................................................. .......................................................................................................................................................................................................tttgtaaagataattcattgaaaaac-gataatttcgatttggcattgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacacttttggaatgcaaaacaataggttttataa.................................................................................................................................................................................................................. Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 6.0E-12 bit: 73.8 Len: 109 Query Start:221 Query End:329 Subject Strand: NEGATIVE Subject Start: 107 Subject End: 215 ............................................................................................................................................................................................................................aaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt...................................................................................................................................................................................................................... ............................................................................................................................................................................................................................aaaaatgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacagccgcttttgccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt...................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAGAAACAACUAUGUUCCGCACCUCGUAAUCGAGGUGCGGAACACUGCUUUCAAAGGGUAUAUGAUACCGCCAAGAACGUAGAACUUACGUUAGUUUGAUAUAAGAAAGCAAGUUAAACAAGCAAUCCUAUAGAUAUUCUUUUACCCACUAAUGAACUUUUACCCACCAAUGAAAUAGUGGGAGUUUUUCCGCUUAACUUUGUAAAGAUAAUUCCGUUAAAAAGUGAUAACUGCGCUUUGACAUUGCGAAAGCGGCUCUUUUGCGAUGCAAAACCUACGCUUUUACCGUGCAAAACAGCCGUUUUUGGAACGCAAAACAAUAGGUUUUAUAACUCUCUGAUGAUUAGAGAGUUAAGCAACAGUUGAACUUGCGAAAAAUAUUUACACCUUUAUCGUCUUCUUUUCUGUCGAUUUCGGGAAGCACGCCACGCCGCCUAUAUCCGAAAUAAGGGUGUAAAACAUACAAAGAAAGCCACCGUAACGAAAGGUCGUUGCGGUGGCUUUUGCUUUUUAAAAUAGCUUCAGUGGCUGUAAAAGCCUUA .....(((.....((((((((((((((....)))))))))))))).(((((((....(((((...)))))..(((.(((((((...)))))))...)))......))))))).)))....((((.(((.....))).........(((((((......(((((........)))))))))))).........))))..(((((((...........(((((..((((.......)))))))))....(((((((((((.(((((((....((((.......))))....))))))).)))))))))))...(((((..((((..(((.(.(((((((((((...))))))))))).).))).))))...))))).......(((((((((((((((.(.........).))).((((((......((......)).....)))))).))))))))))))...))))))).(((((((((((((((....)))))))))))))))..((((((....((((((.....)))))))))))).... (-168.20) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAGGCUUUUACAGCCACUGAAGCUAUUUUAAAAAGCAAAAGCCACCGCAACGACCUUUCGUUACGGUGGCUUUCUUUGUAUGUUUUACACCCUUAUUUCGGAUAUAGGCGGCGUGGCGUGCUUCCCGAAAUCGACAGAAAAGAAGACGAUAAAGGUGUAAAUAUUUUUCGCAAGUUCAACUGUUGCUUAACUCUCUAAUCAUCAGAGAGUUAUAAAACCUAUUGUUUUGCGUUCCAAAAACGGCUGUUUUGCACGGUAAAAGCGUAGGUUUUGCAUCGCAAAAGAGCCGCUUUCGCAAUGUCAAAGCGCAGUUAUCACUUUUUAACGGAAUUAUCUUUACAAAGUUAAGCGGAAAAACUCCCACUAUUUCAUUGGUGGGUAAAAGUUCAUUAGUGGGUAAAAGAAUAUCUAUAGGAUUGCUUGUUUAACUUGCUUUCUUAUAUCAAACUAACGUAAGUUCUACGUUCUUGGCGGUAUCAUAUACCCUUUGAAAGCAGUGUUCCGCACCUCGAUUACGAGGUGCGGAACAUAGUUGUUUCUUA .....(((((((..(((((((.(((.............((((((((((.(((((....))))).))))))))))(((((((...((((((((.(((((((((....(((((((...)).))))).))))..((....)).........))))).))))))))....(((((.((((..((((((.((.(((((((((.......))))))))).........(((..(((((.....(((.(((((.((((((...((((((.(...).))))))...)))))).))))).))))))))...))).))))))))...)))).....))))).......)))))))...))).(((.....(((((((......)))))))......))).))))))))))))))......(((((((..((..(.....)..))..)))))))........(((((.....)))))((..((.(((((...)))))))..)).(((.(((((((((((((((....))))))))))))))).)))........ (-173.10) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 961 300 251 231 182 pint:PI2003|5end_hypothetical_protein_1960823..1961053_POSITIVE 961 300 251 70 21 pint:PI2002|5end_hypothetical_protein_1960662..1960892_POSITIVE 961 300 251 58 9 pint:PI1129|5end_hypothetical_protein_1055377..1055607_POSITIVE 937 300 251 201 152 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 919 290 243 48 1 pint:PI2144|5end_hypothetical_protein_2091954..2092184_POSITIVE 908 300 251 70 21 pint:PI1601|5end_hypothetical_protein_1530282..1530512_POSITIVE 907 310 261 80 31 pint:PI1346|5end_hypothetical_protein_1260814..1261044_POSITIVE 907 310 261 52 3 pint:PI0061|5end_hypothetical_protein_60500..60730_POSITIVE 907 310 261 52 3 pint:PI0004|5end_hypothetical_protein_6199..6429_POSITIVE 887 300 251 78 29 pint:PI1168|5end_hypothetical_protein_1089696..1089926_POSITIVE 887 300 251 70 21 pint:PI1167|5end_hypothetical_protein_1089688..1089918_POSITIVE 885 300 251 70 21 pint:PI1829|5end_hypothetical_protein_1769255..1769485_POSITIVE 883 310 261 80 31 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 883 310 261 206 157 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 879 280 231 50 1 pint:PI1694|5end_hypothetical_protein_1609717..1609947_POSITIVE 863 290 244 48 2 pint:PI1866|5end_hypothetical_protein_1811693..1811923_POSITIVE 863 300 251 70 21 pint:PI1567|5end_hypothetical_protein_1489229..1489459_POSITIVE 863 290 241 202 153 pint:PI1486|5end_alginate_O-acetylation_protein_1405507..1405737_POSITIVE 852 310 261 129 80 pint:PI0055|5end_hypothetical_protein_54815..55045_POSITIVE 850 320 274 47 1 pint:PI1905|5end_hypothetical_protein_1847628..1847858_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 961 300 251 53 4 pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE 961 300 251 112 63 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 961 280 231 132 83 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 903 299 251 151 103 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 903 299 251 151 103 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 877 320 271 132 83 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 853 299 251 151 103 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 852 310 261 63 14 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 846 299 251 151 103 pint:PI0670|3end_hypothetical_protein_611280..611430_POSITIVE 837 300 251 126 77 pint:PI1356|3end_hypothetical_protein_1273340..1273490_POSITIVE 836 289 241 151 103 pint:PI1601|3end_hypothetical_protein_1530454..1530604_POSITIVE 834 280 231 132 83 pint:PI0004|3end_hypothetical_protein_6389..6539_POSITIVE 831 280 231 136 87 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 815 329 281 54 6 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 800 269 221 121 73 pint:PI0200|3end_hypothetical_protein_191735..191885_POSITIVE 786 329 282 48 1 pint:PI0669|3end_hypothetical_protein_611147..611297_POSITIVE 760 270 221 122 73 pint:PI0158|3end_hypothetical_protein_151298..151448_POSITIVE 752 280 231 142 93 pint:PI1076|3end_hypothetical_protein_999065..999215_POSITIVE 739 329 281 54 6 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE 699 290 243 136 89 pint:PI0182|3end_hypothetical_protein_174277..174427_POSITIVE