Origin IGS: tgcacatctattatataggtggaaaacaagtaagaaaggtgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaacaaacctgccgaactctta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taagagttcggcaggtttgttttgtaaagataattctgttaaaaactgataactgcgttttgacattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgcaatacgctgacagtaaggtggttatgcgataggtgtgcttgtgaaaaatatttacacctttcttacttgttttccacctatataatagatgtgca Mask Tandem Repeat Region ================================================ tgcacatctattatataggtggaaaacaagtaagaaaggtgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaacaaacctgccgaactctta Find is-nt database================================================ Query_seq: PI1485:PI1486|PI1485:PI1486:hypothetical protein:alginate O-acetylation protein:->->:1405400..1405646 247 tgcacatctattatataggtggaaaacaagtaagaaaggtgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaacaaacctgccgaactctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1485:PI1486|PI1485:PI1486:hypothetical protein:alginate O-acetylation protein:->->:1405400..1405646 247 tgcacatctattatataggtggaaaacaagtaagaaaggtgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaacaaacctgccgaactctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1485:PI1486|PI1485:PI1486:hypothetical protein:alginate O-acetylation protein:->->:1405400..1405646 247 tgcacatctattatataggtggaaaacaagtaagaaaggtgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaacaaacctgccgaactctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tgcacatctattatataggtggaaaacaagtaagaaaggtgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaacaaacctgccgaactctta Predict ORF larger than 30AA ================================================ Protein_Len: 34 Strand: + Start: 47 End: 148 .............................................. M F H K H T Y R I T T L L S A Y C K T Y C F A F Q K R L F C T V K A ................................................................................................... Protein_Len: 51 Strand: + Start: 94 End: 246 ............................................................................................. M Q N L L F C V P K A A L L H G K S V G F A L Q N S R F R N V K T Q L S V F N R I I F T K Q T C R T L . Protein_Len: 31 Strand: + Start: 155 End: 247 .......................................................................................................................................................... M R C K T A A F A M S K R S Y Q F L T E L S L Q N K P A E L L Protein_Len: 30 Strand: - Start: 106 End: 195 ......................................................................................................... Q K A N W F R S K Q V T F A Y T K R Q L V A A K A I D F R M .................................................... Protein_Len: 60 Strand: - Start: 3 End: 218 .. H L Y K E C A C R D C L W R V T L T N C F R N N Q T G F A A R K C P L L T P K A N C F L R K R L T L V C N D T K L L I M ............................. tgcacatctattatataggtggaaaacaagtaagaaaggtgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaacaaacctgccgaactctta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tgcacatctattatataggtggaaaacaagtaagaaaggtgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaacaaacctgccgaactctta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -13.4 Tail_Score: -3.59262 Start: 124 End: 174 Full_Region: TTTTGCGTTCCAAAA GCGGCTCTTTTGCACGGTAAAAGC GTA GGTTTTGCGTTGCAAAACAGCCGC TTTCGCAATGTCAAA ...........................................................................................................................GCGGCTCTTTTGCACGGTAAAAGCGTAGGTTTTGCGTTGCAAAACAGCCGC......................................................................... TransTerm Strand: - Conf: 86 HP_score: -11.2 Tail_Score: -4.07568 Start: 124 End: 174 Full_Region: tttgacattgcgaaa gcggctgttttgcaacgcaaaacc tac gcttttaccgtgcaaaagagccgc ttttggaacgcaaaa ...........................................................................................................................gcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgc......................................................................... Find igs database================================================ Query_seq: PI1485:PI1486|PI1485:PI1486:hypothetical protein:alginate O-acetylation protein:->->:1405400..1405646 247 tgcacatctattatataggtggaaaacaagtaagaaaggtgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaacaaacctgccgaactctta Intra-Species Hit: Count: 55 Min: 1 Max: 247 Len: 247 Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 1.0E-137 bit: 490.0 Len: 247 Query Start:1 Query End:247 Subject Strand: POSITIVE Subject Start: 1 Subject End: 247 tgcacatctattatataggtggaaaacaagtaagaaaggtgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaacaaacctgccgaactctta tgcacatctattatataggtggaaaacaagtaagaaaggtgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaacaaacctgccgaactctta Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 7.0E-59 bit: 228.0 Len: 191 Query Start:39 Query End:229 Subject Strand: NEGATIVE Subject Start: 49 Subject End: 239 ......................................gtgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaac.................. ......................................gtgtaaatatttttcacaagcttacctattacgtaactatctaaccatcagcgtattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaacggaattatctttacaaaac.................. Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 4.0E-57 bit: 222.0 Len: 144 Query Start:86 Query End:229 Subject Strand: NEGATIVE Subject Start: 165 Subject End: 308 .....................................................................................tcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaac.................. .....................................................................................tcagcgcattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaacagccgctttcgcaatgtcaaaacgcagttatcaatttttaagagaattatctttacaaaac.................. Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 2.0E-56 bit: 220.0 Len: 139 Query Start:90 Query End:228 Subject Strand: POSITIVE Subject Start: 87 Subject End: 225 .........................................................................................cgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaa................... .........................................................................................cgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 2.0E-56 bit: 220.0 Len: 139 Query Start:91 Query End:229 Subject Strand: NEGATIVE Subject Start: 145 Subject End: 283 ..........................................................................................gtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaac.................. ..........................................................................................gtattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcattttttaagagaattatctttacaaaac.................. Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 2.0E-56 bit: 220.0 Len: 135 Query Start:94 Query End:228 Subject Strand: POSITIVE Subject Start: 301 Subject End: 435 .............................................................................................ttgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaa................... .............................................................................................ttgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaa................... Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 3.0E-55 bit: 216.0 Len: 193 Query Start:40 Query End:232 Subject Strand: NEGATIVE Subject Start: 110 Subject End: 302 .......................................tgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaacaaa............... .......................................tgtaaatatttttcacaagcacaccaatcgtataacttactcgctgtcaatgcgttgcaaaacctattgttttgcattccaaaagcggctgttttgcacgctaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcgctttttaacagaataatctttacaaaacaaa............... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 3.0E-55 bit: 216.0 Len: 137 Query Start:93 Query End:229 Subject Strand: POSITIVE Subject Start: 92 Subject End: 228 ............................................................................................attgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaac.................. ............................................................................................attgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaac.................. Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 1.0E-51 bit: 204.0 Len: 131 Query Start:98 Query End:228 Subject Strand: NEGATIVE Subject Start: 111 Subject End: 241 .................................................................................................aaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaa................... .................................................................................................aaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcagtttttaacagaattatctttacaaaa................... Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 1.0E-51 bit: 204.0 Len: 155 Query Start:72 Query End:226 Subject Strand: NEGATIVE Subject Start: 170 Subject End: 324 .......................................................................taaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaa..................... .......................................................................taaccacctaaccatcagcgcattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaatgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacggaattatctttacaa..................... Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 1.0E-51 bit: 204.0 Len: 131 Query Start:97 Query End:227 Subject Strand: POSITIVE Subject Start: 254 Subject End: 384 ................................................................................................caaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaa.................... ................................................................................................caaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa.................... Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 2.0E-49 bit: 196.0 Len: 131 Query Start:97 Query End:227 Subject Strand: NEGATIVE Subject Start: 149 Subject End: 279 ................................................................................................caaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaa.................... ................................................................................................caaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcggttatcactttttaacggaattatctttacaaa.................... Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 1.0E-48 bit: 194.0 Len: 130 Query Start:98 Query End:227 Subject Strand: NEGATIVE Subject Start: 200 Subject End: 329 .................................................................................................aaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaa.................... .................................................................................................aaaacctattgttttgcgttccaaaaacggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaacggaattatctttacaaa.................... Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 2.0E-47 bit: 190.0 Len: 132 Query Start:98 Query End:229 Subject Strand: POSITIVE Subject Start: 111 Subject End: 242 .................................................................................................aaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaac.................. .................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaac.................. Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 6.0E-47 bit: 188.0 Len: 131 Query Start:97 Query End:227 Subject Strand: NEGATIVE Subject Start: 480 Subject End: 610 ................................................................................................caaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaa.................... ................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcatggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacagaattatctttacaaa.................... Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 2.0E-46 bit: 186.0 Len: 142 Query Start:86 Query End:227 Subject Strand: NEGATIVE Subject Start: 215 Subject End: 356 .....................................................................................tcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaa.................... .....................................................................................tcagtgtattacaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcatcgtcaaaacgcagttatcactttttaagagaataatctttacaaa.................... Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 9.0E-46 bit: 184.0 Len: 117 Query Start:93 Query End:209 Subject Strand: NEGATIVE Subject Start: 120 Subject End: 236 ............................................................................................attgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaa...................................... ............................................................................................attgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaa...................................... Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 4.0E-45 bit: 182.0 Len: 132 Query Start:97 Query End:228 Subject Strand: POSITIVE Subject Start: 151 Subject End: 282 ................................................................................................caaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaa................... ................................................................................................caaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa................... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 4.0E-45 bit: 182.0 Len: 136 Query Start:97 Query End:232 Subject Strand: NEGATIVE Subject Start: 55 Subject End: 190 ................................................................................................caaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaacaaa............... ................................................................................................caaaacctattgttttgcattctaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttgtcactttttaacagaattatctttacaaagcaaa............... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 1.0E-44 bit: 180.0 Len: 139 Query Start:90 Query End:228 Subject Strand: NEGATIVE Subject Start: 91 Subject End: 229 .........................................................................................cgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaa................... .........................................................................................cgtattgcaaaacctattgttttgcactccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgttttcgcaatgtcaaatcgaaattattactttttaaagaaattatctttacaaaa................... Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 2.0E-43 bit: 176.0 Len: 133 Query Start:97 Query End:229 Subject Strand: POSITIVE Subject Start: 40 Subject End: 172 ................................................................................................caaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaac.................. ................................................................................................caaaacctattgttttgcattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgtaaaagagccgctttcgcaacgtcaaaacgaaattattgtttttcatcagaattatctttacaaaac.................. Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 9.0E-43 bit: 174.0 Len: 140 Query Start:90 Query End:229 Subject Strand: NEGATIVE Subject Start: 214 Subject End: 353 .........................................................................................cgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaac.................. .........................................................................................cgtattgtaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgccaaatcgaaattatcgtttttcagcgaaattatctttacaaaac.................. Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 4.0E-42 bit: 172.0 Len: 131 Query Start:97 Query End:227 Subject Strand: POSITIVE Subject Start: 386 Subject End: 516 ................................................................................................caaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaa.................... ................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaacagccgctttcgcaatgccaaatcgaaattatcatttttcatcagaattatctttacaaa.................... Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 2.0E-40 bit: 167.0 Len: 132 Query Start:97 Query End:228 Subject Strand: POSITIVE Subject Start: 696 Subject End: 827 ................................................................................................caaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaa................... ................................................................................................caaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaa................... Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 9.0E-40 bit: 165.0 Len: 131 Query Start:98 Query End:228 Subject Strand: NEGATIVE Subject Start: 141 Subject End: 271 .................................................................................................aaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaa................... .................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaagagaattatctttacaaaa................... Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 9.0E-40 bit: 165.0 Len: 127 Query Start:101 Query End:227 Subject Strand: NEGATIVE Subject Start: 310 Subject End: 436 ....................................................................................................acctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaa.................... ....................................................................................................acctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaaagaaattatctttacaaa.................... Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 9.0E-40 bit: 165.0 Len: 191 Query Start:38 Query End:228 Subject Strand: NEGATIVE Subject Start: 185 Subject End: 375 .....................................ggtgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaa................... .....................................ggtgtaaatatttttcacaacaatacctatcgcataacaaactaatcatcaacgccttacaaaacctattgtttcgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcacaaaagagccgctttcgcaacgccaaagcgcagttatcaatttttaagagaattatctttacaaaa................... Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 5.0E-38 bit: 159.0 Len: 131 Query Start:98 Query End:228 Subject Strand: NEGATIVE Subject Start: 155 Subject End: 285 .................................................................................................aaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagttt-ttaacagaattatctttacaaaa................... .................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagcagctttcgcaacgtcaaatcgaaattatcgttttcttaac-gaattatctttacaaaa................... Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 5.0E-38 bit: 159.0 Len: 192 Query Start:38 Query End:229 Subject Strand: POSITIVE Subject Start: 351 Subject End: 542 .....................................ggtgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaac.................. .....................................ggtgtaaatatttttcacaagaacatcaaataggtaaacactttactatcaacgtgttacaaaacctattgttttgcattccaaaagcggctgttttgcacggcaaaagcgtaggttttacctcgcaaaacagccgctttcgcaacgtcaaaacgaaattatcaattttcaatgtaattatctttacaaaac.................. Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 8.0E-37 bit: 155.0 Len: 142 Query Start:86 Query End:227 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 398 .....................................................................................tcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaa.................... .....................................................................................tcagtgtattgcaaaacctacgcttttgcgttccaaaagcggctgttttgtacggtaaaagcgtaggttttgcatcgcaaaagaaccgctttcgcaacgttaaagcgcagttatcactttttaacggaattatatttacaaa.................... Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 8.0E-37 bit: 155.0 Len: 134 Query Start:97 Query End:230 Subject Strand: NEGATIVE Subject Start: 8 Subject End: 141 ................................................................................................caaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaaca................. ................................................................................................caaaacctattgttttgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccactttcgcaacgtcaaatcgaaattatcatttttcttcggaattatctttacaaaaca................. Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 3.0E-36 bit: 153.0 Len: 133 Query Start:97 Query End:229 Subject Strand: NEGATIVE Subject Start: 112 Subject End: 244 ................................................................................................caaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaac.................. ................................................................................................caaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaatcgaaattaccatttttcaaagaaattatctttacaaaac.................. Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 3.0E-30 bit: 133.0 Len: 135 Query Start:91 Query End:225 Subject Strand: NEGATIVE Subject Start: 190 Subject End: 324 ..........................................................................................gtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttaca...................... ..........................................................................................gtattacaaaacctattgttttgcattccaaaagcgtaggttttacacgataaaagcggctgttttgcgttgcaaaacagccactttcgcaatgtcaaagcgcagttattactttttaacggaattatttttaca...................... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 1.0E-29 bit: 131.0 Len: 133 Query Start:97 Query End:229 Subject Strand: POSITIVE Subject Start: 331 Subject End: 463 ................................................................................................caaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagttt-ttaacagaattatctttacaaaac.................. ................................................................................................caaaacctattgttttgcatcctaaaagcggctgttttgcacggtaaaagcataggttttgcgttgcaaaagagctgctttcgcaacgtcaaatcgaaattatcgttttcttaac-gaattatctttacaaaac.................. Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 1.0E-29 bit: 131.0 Len: 130 Query Start:98 Query End:227 Subject Strand: POSITIVE Subject Start: 179 Subject End: 308 .................................................................................................aaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaa.................... .................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa.................... HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 35 Query Start:143 Query End:177 Subject Strand: NEGATIVE Subject Start: 224 Subject End: 258 ..............................................................................................................................................aaagcgtaggttttgcgttgcaaaacagccgcttt...................................................................... ..............................................................................................................................................aaagcgtaggttttgcaatgcaaaacagccgcttt...................................................................... Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 5.0E-29 bit: 129.0 Len: 133 Query Start:97 Query End:229 Subject Strand: NEGATIVE Subject Start: 200 Subject End: 331 ................................................................................................caaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaac.................. ................................................................................................caaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgcaaa-cagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaac.................. Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 2.0E-28 bit: 127.0 Len: 192 Query Start:35 Query End:226 Subject Strand: NEGATIVE Subject Start: 113 Subject End: 304 ..................................aaaggtgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaa..................... ..................................aaagctgtaaatatttttcacaagagtacctatcgtataactacctcatcatcagtgtgttataaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggttgttttgcatcgtaaaacagctgcttttgcaatgtcaaaaggcagttatcactttttaacggaattatttttacaa..................... Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 1.0E-26 bit: 121.0 Len: 189 Query Start:40 Query End:228 Subject Strand: POSITIVE Subject Start: 289 Subject End: 477 .......................................tgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaa................... .......................................tgtaaatatttttcacaagcacaacaaccacgtaatcatctgtttatcaacgcattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaa................... Subject: pint_PI0195_PI0196|epimerase/reductase:hypothetical protein|POSITIVE:POSITIVE|[188263,188574]|312 HSP 1 e-value: 2.0E-25 bit: 117.0 Len: 103 Query Start:87 Query End:189 Subject Strand: NEGATIVE Subject Start: 184 Subject End: 286 ......................................................................................cagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaa.......................................................... ......................................................................................cagcgtattacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgatgcaaaacagccgctttcgcaatgccaaa.......................................................... Subject: pint_PI1099_PI1100|low molecular weight protein-tyrosine-phosphatase:conserved hypothetical protein; possible rhodanese-domain protein|POSITIVE:POSITIVE|[1023697,1024049]|353 HSP 1 e-value: 7.0E-25 bit: 115.0 Len: 78 Query Start:152 Query End:229 Subject Strand: NEGATIVE Subject Start: 103 Subject End: 180 .......................................................................................................................................................gttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaac.................. .......................................................................................................................................................gttttgcgttgcaaaagagccgctttcgcaacgtcaaaacgcagttatcactttttaagggaattatctttacaaaac.................. HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 31 Query Start:94 Query End:124 Subject Strand: NEGATIVE Subject Start: 164 Subject End: 194 .............................................................................................ttgcaaaacctattgttttgcgttccaaaag........................................................................................................................... .............................................................................................ttgcaaaacctattgttttgcgttgcaaaag........................................................................................................................... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 1.0E-23 bit: 111.0 Len: 132 Query Start:97 Query End:228 Subject Strand: NEGATIVE Subject Start: 191 Subject End: 322 ................................................................................................caaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaa................... ................................................................................................caaaatctattgttttgcgtcctaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgtaaaacagccgctttcgcaacgtcaaagtgcagttatcactttttaacgaaattatctttacaaaa................... Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 5.0E-23 bit: 109.0 Len: 138 Query Start:93 Query End:230 Subject Strand: POSITIVE Subject Start: 102 Subject End: 239 ............................................................................................attgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttt-taacagaattatctttacaaaaca................. ............................................................................................attgcaaaacctattgttttgcattccaaaagcgtaggttttacacggcaaaagcggctgttttgcgttgcaaaacagccgctttcgcaatgccaaatcgaaattatcatttttcttac-gaataatctttacaaaaca................. Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 7.0E-22 bit: 105.0 Len: 137 Query Start:93 Query End:229 Subject Strand: POSITIVE Subject Start: 174 Subject End: 310 ............................................................................................attgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaac.................. ............................................................................................attgtaaaacctattgtttcgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgcttttgcaatgtcaaaacgcaattgccactttttaataaaattatctttacaaaac.................. Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 3.0E-21 bit: 103.0 Len: 132 Query Start:97 Query End:228 Subject Strand: NEGATIVE Subject Start: 79 Subject End: 210 ................................................................................................caaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaa................... ................................................................................................caaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcatcgcaaaacagccgctttcgcaatgccaaagcgcaattaccacttttcaacgaaattatctttacaaaa................... Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 1.0E-20 bit: 101.0 Len: 123 Query Start:106 Query End:228 Subject Strand: NEGATIVE Subject Start: 226 Subject End: 348 .........................................................................................................ttgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaa................... .........................................................................................................ttgttttgcgttccaaaagcggctgttttgcaaggtaaaagagccgcttttggcgtgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatttttacaaaa................... Subject: pint_PI1324_PI1325|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1243086,1243554]|469 HSP 1 e-value: 1.0E-20 bit: 101.0 Len: 187 Query Start:40 Query End:226 Subject Strand: POSITIVE Subject Start: 204 Subject End: 390 .......................................tgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaa..................... .......................................tgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa..................... Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 4.0E-20 bit: 99.6 Len: 190 Query Start:40 Query End:229 Subject Strand: POSITIVE Subject Start: 175 Subject End: 363 .......................................tgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaac.................. .......................................tgtaaatatttttcacaagcacaactattgtgtaacctattgcttgtcagtgtattataaaacctattgttttgcattccaaaagtgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaatgccaaatcgaaattatc-gtttttcaatgaattatctttacaaaac.................. HSP 2 e-value: 2.0E-6 bit: 54.0 Len: 35 Query Start:143 Query End:177 Subject Strand: NEGATIVE Subject Start: 278 Subject End: 312 ..............................................................................................................................................aaagcgtaggttttgcgttgcaaaacagccgcttt...................................................................... ..............................................................................................................................................aaagcgtaggttttgcaatgcaaaacagccgcttt...................................................................... Subject: pint_PI1981_PI1982|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1938199,1938578]|380 HSP 1 e-value: 7.0E-19 bit: 95.6 Len: 132 Query Start:98 Query End:229 Subject Strand: NEGATIVE Subject Start: 143 Subject End: 274 .................................................................................................aaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaac.................. .................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctgttttgaaatgcaaaacagccgctttcgcaatgtcaaaccgaaattgctgttttttatcagaattatctttacaaaac.................. Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 7.0E-19 bit: 95.6 Len: 136 Query Start:94 Query End:229 Subject Strand: NEGATIVE Subject Start: 143 Subject End: 278 .............................................................................................ttgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaac.................. .............................................................................................ttgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgtcaaatcgaaattatcattttttcaacgaattatctttacaaaac.................. HSP 2 e-value: 9.0E-9 bit: 61.9 Len: 35 Query Start:143 Query End:177 Subject Strand: POSITIVE Subject Start: 195 Subject End: 229 ..............................................................................................................................................aaagcgtaggttttgcgttgcaaaacagccgcttt...................................................................... ..............................................................................................................................................aaagcgtaggttttgcgttgcaaaagagccgcttt...................................................................... Subject: pint_PI1958_PI1959|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1917430,1917847]|418 HSP 1 e-value: 3.0E-18 bit: 93.7 Len: 131 Query Start:98 Query End:228 Subject Strand: NEGATIVE Subject Start: 182 Subject End: 312 .................................................................................................aaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaa................... .................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctgttttgcaatgcaaaacagccgcttttgcaatgtcaaaccgaaattgctgttttttatcagaattatctttacaaaa................... Subject: pint_PI1915_PI1916|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1859967,1860350]|384 HSP 1 e-value: 4.0E-17 bit: 89.7 Len: 57 Query Start:121 Query End:177 Subject Strand: POSITIVE Subject Start: 165 Subject End: 221 ........................................................................................................................aaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgcttt...................................................................... ........................................................................................................................aaagcggctgttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt...................................................................... HSP 2 e-value: 4.0E-14 bit: 79.8 Len: 131 Query Start:98 Query End:228 Subject Strand: NEGATIVE Subject Start: 114 Subject End: 244 .................................................................................................aaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgta-ggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaa................... .................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcaacgtaaaa-catacgcttttaccgtgcaaaacagccgctttcgcaatgccaaatcgaaattatcgtttttcgtcagaattatttttacaaaa................... Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 7.0E-16 bit: 85.7 Len: 155 Query Start:35 Query End:189 Subject Strand: NEGATIVE Subject Start: 180 Subject End: 334 ..................................aaaggtgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaa.......................................................... ..................................aaagatgtaaatatttttcacaagaatacctattgtataacattctcattatcaacgcaatgcaaaacctattgttttgcattgtaaaagcgtaggttttacacggtcaaagcggctgttttgcgatgcaaaacagccgctttcgcaatgccaaa.......................................................... Subject: pint_PI1102_PI1103|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1026308,1026686]|379 HSP 1 e-value: 4.0E-14 bit: 79.8 Len: 121 Query Start:107 Query End:227 Subject Strand: POSITIVE Subject Start: 55 Subject End: 177 ..........................................................................................................tgttttgcgttccaaaagcggctcttttgcacggt--aaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaa.................... ..........................................................................................................tgttttccgctccaaaagagcctcttttacacggggcaaaagcgtaggtcttgcattgcaaaacagccgctttcgcaagactaaagcgtagttattactttttaagggaattatctttacaaa.................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 2.0E-13 bit: 77.8 Len: 127 Query Start:106 Query End:232 Subject Strand: POSITIVE Subject Start: 199 Subject End: 325 .........................................................................................................ttgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaacaaa............... .........................................................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaacaaa............... HSP 2 e-value: 9.0E-9 bit: 61.9 Len: 35 Query Start:143 Query End:177 Subject Strand: NEGATIVE Subject Start: 236 Subject End: 270 ..............................................................................................................................................aaagcgtaggttttgcgttgcaaaacagccgcttt...................................................................... ..............................................................................................................................................aaagcgtaggttttgcgttgcaaaagagccgcttt...................................................................... Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 6.0E-13 bit: 75.8 Len: 190 Query Start:39 Query End:228 Subject Strand: POSITIVE Subject Start: 115 Subject End: 304 ......................................gtgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaa................... ......................................gtgtaaatatttttcacaagtatatccattgcgtaacaagctatctgtcagcgtgttataaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaa................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGCACAUCUAUUAUAUAGGUGGAAAACAAGUAAGAAAGGUGUAAAUAUUUUUCACAAGCACACCUAUCGCAUAACCACCUUACUGUCAGCGUAUUGCAAAACCUAUUGUUUUGCGUUCCAAAAGCGGCUCUUUUGCACGGUAAAAGCGUAGGUUUUGCGUUGCAAAACAGCCGCUUUCGCAAUGUCAAAACGCAGUUAUCAGUUUUUAACAGAAUUAUCUUUACAAAACAAACCUGCCGAACUCUUA ((.((((.........((((((...........((((((((....))))))))....((.........))....))))))........(((....(((((((.....)))))))......(((((((((.(((((((((...(((((....))))).)).))))))).)))))))))))).))))))....((((......((((((((.(((....)))))).)))))....)))).......... (-58.90) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAGAGUUCGGCAGGUUUGUUUUGUAAAGAUAAUUCUGUUAAAAACUGAUAACUGCGUUUUGACAUUGCGAAAGCGGCUGUUUUGCAACGCAAAACCUACGCUUUUACCGUGCAAAAGAGCCGCUUUUGGAACGCAAAACAAUAGGUUUUGCAAUACGCUGACAGUAAGGUGGUUAUGCGAUAGGUGUGCUUGUGAAAAAUAUUUACACCUUUCUUACUUGUUUUCCACCUAUAUAAUAGAUGUGCA ..........(((.(((((((.(((..........((((((.............((((.......((.(((((((((((.(((((((.((.((((.......))))..))))))))).))))))))))).)).(((((((.....)))))))...))))))))))..((((((....((((.(((((((..(((.....)))..))))))).......))))...))))))))).))))))).))). (-74.11) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 952 180 131 216 167 pint:PI0024|5end_hypothetical_protein_28378..28608_POSITIVE 940 160 111 210 161 pint:PI0827|5end_hypothetical_protein_763991..764221_POSITIVE 932 180 131 79 30 pint:PI1204|5end_hypothetical_protein_1124430..1124660_POSITIVE 928 180 131 61 12 pint:PI0638|5end_hypothetical_protein_582218..582448_POSITIVE 886 160 111 63 14 pint:PI2022|5end_hypothetical_protein_1978631..1978861_POSITIVE 880 180 131 175 126 pint:PI1804|5end_hypothetical_protein_1738109..1738339_POSITIVE 880 180 131 62 13 pint:PI1786|5end_hypothetical_protein_1718124..1718354_POSITIVE 860 180 131 216 167 pint:PI2046|5end_hypothetical_protein_1999030..1999260_POSITIVE 857 160 111 223 174 pint:PI1333|5end_conserved_hypothetical_protein_1250777..1251007_POSITIVE 851 180 131 230 181 pint:PI0575|5end_hypothetical_protein_519561..519791_POSITIVE 843 180 131 230 181 pint:PI0887|5end_hypothetical_protein_817536..817766_POSITIVE 843 180 131 123 74 pint:PI0867|5end_hypothetical_protein_803859..804089_POSITIVE 843 180 131 123 74 pint:PI0119|5end_hypothetical_protein_111506..111736_POSITIVE 843 180 131 64 15 pint:PI0089|5end_hypothetical_protein_88162..88392_POSITIVE 842 150 101 226 177 pint:PI2024|5end_hypothetical_protein_1978804..1979034_POSITIVE 842 150 101 180 131 pint:PI0991|5end_conserved_hypothetical_protein_915309..915539_POSITIVE 832 140 94 231 185 pint:PI0695|5end_xanthine/uracil_permease_family_protein_631413..631643_POSITIVE 825 200 151 51 2 pint:PI1064|5end_hypothetical_protein_983071..983301_POSITIVE 802 180 131 83 34 pint:PI0322|5end_hypothetical_protein_303508..303738_POSITIVE 794 200 151 57 8 pint:PI2023|5end_hypothetical_protein_1978585..1978815_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 936 160 111 145 96 pint:PI0638|3end_hypothetical_protein_582402..582552_POSITIVE 936 160 111 140 91 pint:PI0637|3end_hypothetical_protein_582397..582547_POSITIVE 866 160 111 145 96 pint:PI0095|3end_hypothetical_protein_91850..92000_POSITIVE 846 160 111 145 96 pint:PI0815|3end_hypothetical_protein_754677..754827_POSITIVE 842 150 101 135 86 pint:PI0568|3end_hypothetical_protein_513131..513281_POSITIVE 842 150 101 59 10 pint:PI0567|3end_hypothetical_protein_513055..513205_POSITIVE 838 150 101 147 98 pint:PI1041|3end_hypothetical_protein_960675..960825_POSITIVE 826 160 111 145 96 pint:PI0081|3end_hypothetical_protein_80700..80850_POSITIVE 822 150 101 147 98 pint:PI1797|3end_hypothetical_protein_1731559..1731709_POSITIVE 822 150 101 147 98 pint:PI0885|3end_hypothetical_protein_817563..817713_POSITIVE 822 150 101 147 98 pint:PI0866|3end_hypothetical_protein_803993..804143_POSITIVE 822 150 101 147 98 pint:PI0820|3end_hypothetical_protein_759980..760130_POSITIVE 822 150 101 86 37 pint:PI0819|3end_hypothetical_protein_759919..760069_POSITIVE 822 150 101 147 98 pint:PI0118|3end_hypothetical_protein_111640..111790_POSITIVE 822 150 101 147 98 pint:PI0089|3end_hypothetical_protein_88355..88505_POSITIVE 821 160 111 145 96 pint:PI1252|3end_hypothetical_protein_1175440..1175590_POSITIVE 789 129 84 126 81 pint:PI1005|3end_hypothetical_protein_926481..926631_POSITIVE 725 127 84 151 108 pint:PI2023|3end_hypothetical_protein_1978832..1978982_POSITIVE 716 160 111 145 96 pint:PI1155|3end_hypothetical_protein_1080352..1080502_POSITIVE 709 180 131 138 89 pint:PI1521|3end_hypothetical_protein_1441461..1441611_POSITIVE