Origin IGS: cccatctggcgatggttgttctgcatactcaaaacttactcctaactcgtgtccatcgcctaaaagatgtttaaagccaggcaaatcgtatggggttgatattatcaatatttcctttatgcctgcaagcatcaatgcggaaataggataataaatcattggtttatcataaataggtatcaactgtttgcttatgccttttgtaattggataaaggcgagtacctgagcctcctgcgagaacaatacctttcatacttattctttattaaatgcttattatattgatgttacgcccagccagaacaggtagagaatatgcttctcccaatcttcacatttcgtagaaacattccaatagttactcgcaaatagtaatctctcctcattcaattctgagttattctgtttattgcccgcaaaggtaatcaattaaattgatatttaaggcatctataataaaaaatgttactgtccactaaaactttttgcatcagataacgtgagttcaatataagaataacgccatataatttattttacttaaagaaagaactgataatgatttgatacacttatcatcagaaagaaatgaagcatcttcacactattatatgaacgaaaagaagataatatgcgtgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaattaaatgaaataactctcactgtttcatcagtggatttgtagaaaaacatctacgagatagcttgcttaaccaactccctttatgccgaactgacattcagataaaaccaaggcagacttccttttaatggtatctaatccttttagctatttctattttacaacaaaccaaagcatagtaacgagtaaaaacacacattctatcaaagcataaacaactaaacaacacagcaattaaaaaaaatatacttattatcctaaatcttattttattttcttaactttgcaaacgtaaaagagtgtagactcagttattaatcaaattcattaataaactaaa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tttagtttattaatgaatttgattaataactgagtctacactcttttacgtttgcaaagttaagaaaataaaataagatttaggataataagtatattttttttaattgctgtgttgtttagttgtttatgctttgatagaatgtgtgtttttactcgttactatgctttggtttgttgtaaaatagaaatagctaaaaggattagataccattaaaaggaagtctgccttggttttatctgaatgtcagttcggcataaagggagttggttaagcaagctatctcgtagatgtttttctacaaatccactgatgaaacagtgagagttatttcatttaattttgtaaaaataattctgttaaaaagtgataactgtactttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatacaaaacaataggttttgtaatgagctgatagatagtgaattatgcaacagttatgtttgtgaaaaatatttacacgcatattatcttcttttcgttcatataatagtgtgaagatgcttcatttctttctgatgataagtgtatcaaatcattatcagttctttctttaagtaaaataaattatatggcgttattcttatattgaactcacgttatctgatgcaaaaagttttagtggacagtaacattttttattatagatgccttaaatatcaatttaattgattacctttgcgggcaataaacagaataactcagaattgaatgaggagagattactatttgcgagtaactattggaatgtttctacgaaatgtgaagattgggagaagcatattctctacctgttctggctgggcgtaacatcaatataataagcatttaataaagaataagtatgaaaggtattgttctcgcaggaggctcaggtactcgcctttatccaattacaaaaggcataagcaaacagttgatacctatttatgataaaccaatgatttattatcctatttccgcattgatgcttgcaggcataaaggaaatattgataatatcaaccccatacgatttgcctggctttaaacatcttttaggcgatggacacgagttaggagtaagttttgagtatgcagaacaaccatcgccagatggg Mask Tandem Repeat Region ================================================ cccatctggcgatggttgttctgcatactcaaaacttactcctaactcgtgtccatcgcctaaaagatgtttaaagccaggcaaatcgtatggggttgatattatcaatatttcctttatgcctgcaagcatcaatgcggaaataggataataaatcattggtttatcataaataggtatcaactgtttgcttatgccttttgtaattggataaaggcgagtacctgagcctcctgcgagaacaatacctttcatacttattctttattaaatgcttattatattgatgttacgcccagccagaacaggtagagaatatgcttctcccaatcttcacatttcgtagaaacattccaatagttactcgcaaatagtaatctctcctcattcaattctgagttattctgtttattgcccgcaaaggtaatcaattaaattgatatttaaggcatctataataaaaaatgttactgtccactaaaactttttgcatcagataacgtgagttcaatataagaataacgccatataatttattttacttaaagaaagaactgataatgatttgatacacttatcatcagaaagaaatgaagcatcttcacactattatatgaacgaaaagaagataatatgcgtgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaattaaatgaaataactctcactgtttcatcagtggatttgtagaaaaacatctacgagatagcttgcttaaccaactccctttatgccgaactgacattcagataaaaccaaggcagacttccttttaatggtatctaatccttttagctatttctattttacaacaaaccaaagcatagtaacgagtaaaaacacacattctatcaaagcataaacaactaaacaacacagcaattaaaaaaaatatacttattatcctaaatcttattttattttcttaactttgcaaacgtaaaagagtgtagactcagttattaatcaaattcattaataaactaaa Find is-nt database================================================ Query_seq: PI1408:PI1409|PI1408:PI1409:glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein:->->:1329822..1330988 1167 cccatctggcgatggttgttctgcatactcaaaacttactcctaactcgtgtccatcgcctaaaagatgtttaaagccaggcaaatcgtatggggttgatattatcaatatttcctttatgcctgcaagcatcaatgcggaaataggataataaatcattggtttatcataaataggtatcaactgtttgcttatgccttttgtaattggataaaggcgagtacctgagcctcctgcgagaacaatacctttcatacttattctttattaaatgcttattatattgatgttacgcccagccagaacaggtagagaatatgcttctcccaatcttcacatttcgtagaaacattccaatagttactcgcaaatagtaatctctcctcattcaattctgagttattctgtttattgcccgcaaaggtaatcaattaaattgatatttaaggcatctataataaaaaatgttactgtccactaaaactttttgcatcagataacgtgagttcaatataagaataacgccatataatttattttacttaaagaaagaactgataatgatttgatacacttatcatcagaaagaaatgaagcatcttcacactattatatgaacgaaaagaagataatatgcgtgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaattaaatgaaataactctcactgtttcatcagtggatttgtagaaaaacatctacgagatagcttgcttaaccaactccctttatgccgaactgacattcagataaaaccaaggcagacttccttttaatggtatctaatccttttagctatttctattttacaacaaaccaaagcatagtaacgagtaaaaacacacattctatcaaagcataaacaactaaacaacacagcaattaaaaaaaatatacttattatcctaaatcttattttattttcttaactttgcaaacgtaaaagagtgtagactcagttattaatcaaattcattaataaactaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1408:PI1409|PI1408:PI1409:glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein:->->:1329822..1330988 1167 cccatctggcgatggttgttctgcatactcaaaacttactcctaactcgtgtccatcgcctaaaagatgtttaaagccaggcaaatcgtatggggttgatattatcaatatttcctttatgcctgcaagcatcaatgcggaaataggataataaatcattggtttatcataaataggtatcaactgtttgcttatgccttttgtaattggataaaggcgagtacctgagcctcctgcgagaacaatacctttcatacttattctttattaaatgcttattatattgatgttacgcccagccagaacaggtagagaatatgcttctcccaatcttcacatttcgtagaaacattccaatagttactcgcaaatagtaatctctcctcattcaattctgagttattctgtttattgcccgcaaaggtaatcaattaaattgatatttaaggcatctataataaaaaatgttactgtccactaaaactttttgcatcagataacgtgagttcaatataagaataacgccatataatttattttacttaaagaaagaactgataatgatttgatacacttatcatcagaaagaaatgaagcatcttcacactattatatgaacgaaaagaagataatatgcgtgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaattaaatgaaataactctcactgtttcatcagtggatttgtagaaaaacatctacgagatagcttgcttaaccaactccctttatgccgaactgacattcagataaaaccaaggcagacttccttttaatggtatctaatccttttagctatttctattttacaacaaaccaaagcatagtaacgagtaaaaacacacattctatcaaagcataaacaactaaacaacacagcaattaaaaaaaatatacttattatcctaaatcttattttattttcttaactttgcaaacgtaaaagagtgtagactcagttattaatcaaattcattaataaactaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 4 Min: 1 Max: 255 Len: 255 Subject: gi|89110228|ref|AP_004008.1| glucose-1-phosphate thymidylyltransferase [Escherichia coli W3110] HSP 1 e-value: 3.0E-33 bit: 139.0 Len: 255 Query Start:1 Query End:255 Subject Strand: null Subject Start: 1 Subject End: 85 M K G I V L A G G S G T R L Y P I T K G I S K Q L I P I Y D K P M I Y Y P I S A L M L A G I K E I L I I S T P Y D L P G F K H L L G D G H E L G V S F E Y A E Q P S P D G ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M K G I I L A G G S G T R L H P I T R G V S K Q L L P I Y D K P M I Y Y P L S V L M L A G I R E I L I I T T P E D K G Y F Q R L L G D G S E F G I Q L E Y A E Q P S P D G ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: gi|89108859|ref|AP_002639.1| glucose-1-phosphate thymidylyltransferase [Escherichia coli W3110] HSP 1 e-value: 5.0E-31 bit: 132.0 Len: 252 Query Start:1 Query End:252 Subject Strand: null Subject Start: 5 Subject End: 88 K G I V L A G G S G T R L Y P I T K G I S K Q L I P I Y D K P M I Y Y P I S A L M L A G I K E I L I I S T P Y D L P G F K H L L G D G H E L G V S F E Y A E Q P S P D G ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... K G I I L A G G S G T R L Y P V T M A V S K Q L L P I Y D K P M I Y Y P L S T L M L A G I R D I L I I S T P Q D T P R F Q Q L L G D G S Q W G L N L Q Y K V Q P S P D G ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: gi|89108862|ref|AP_002642.1| predicted subunit with GalU [Escherichia coli W3110] HSP 1 e-value: 6.0E-8 bit: 55.5 Len: 159 Query Start:97 Query End:255 Subject Strand: null Subject Start: 4 Subject End: 56 ................................................................................................ M K G I V L A G G S G T R L Y P I T K G I S K Q L I P I Y D K P M I Y Y P I S A L M L A G I K E I L I I S ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ ................................................................................................ L K A V I P V A G L G M H M L P A T K A I P K E M L P I V D K P M I Q Y I V D E I V A A G I K E I L L V T ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Subject: gi|89108082|ref|AP_001862.1| glucose-1-phosphate uridylyltransferase [Escherichia coli W3110] HSP 1 e-value: 3.0E-7 bit: 53.1 Len: 156 Query Start:97 Query End:252 Subject Strand: null Subject Start: 10 Subject End: 61 ................................................................................................ K G I V L A G G S G T R L Y P I T K G I S K Q L I P I Y D K P M I Y Y P I S A L M L A G I K E I L I I S ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ................................................................................................ K A V I P V A G L G T R M L P A T K A I P K E M L P L V D K P L I Q Y V V N E C I A A G I T E I V L V T ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Find nr database================================================ Query_seq: PI1408:PI1409|PI1408:PI1409:glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein:->->:1329822..1330988 1167 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttattctttattaaatgcttattatattgatgttacgcccagccagaacaggtagagaatatgcttctcccaatcttcacatttcgtagaaacattccaatagttactcgcaaatagtaatctctcctcattcaattctgagttattctgtttattgcccgcaaaggtaatcaattaaattgatatttaaggcatctataataaaaaatgttactgtccactaaaactttttgcatcagataacgtgagttcaatataagaataacgccatataatttattttacttaaagaaagaactgataatgatttgatacacttatcatcagaaagaaatgaagcatcttcacactattatatgaacgaaaagaagataatatgcgtgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaattaaatgaaataactctcactgtttcatcagtggatttgtagaaaaacatctacgagatagcttgcttaaccaactccctttatgccgaactgacattcagataaaaccaaggcagacttccttttaatggtatctaatccttttagctatttctattttacaacaaaccaaagcatagtaacgagtaaaaacacacattctatcaaagcataaacaactaaacaacacagcaattaaaaaaaatatacttattatcctaaatcttattttattttcttaactttgcaaacgtaaaagagtgtagactcagttattaatcaaattcattaataaactaaa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttattctttattaaatgcttattatattgatgttacgcccagccagaacaggtagagaatatgcttctcccaatcttcacatttcgtagaaacattccaatagttactcgcaaatagtaatctctcctcattcaattctgagttattctgtttattgcccgcaaaggtaatcaattaaattgatatttaaggcatctataataaaaaatgttactgtccactaaaactttttgcatcagataacgtgagttcaatataagaataacgccatataatttattttacttaaagaaagaactgataatgatttgatacacttatcatcagaaagaaatgaagcatcttcacactattatatgaacgaaaagaagataatatgcgtgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaattaaatgaaataactctcactgtttcatcagtggatttgtagaaaaacatctacgagatagcttgcttaaccaactccctttatgccgaactgacattcagataaaaccaaggcagacttccttttaatggtatctaatccttttagctatttctattttacaacaaaccaaagcatagtaacgagtaaaaacacacattctatcaaagcataaacaactaaacaacacagcaattaaaaaaaatatacttattatcctaaatcttattttattttcttaactttgcaaacgtaaaagagtgtagactcagttattaatcaaattcattaataaactaaa Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 536 End: 640 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M L L K E R T D N D L I H L S S E R N E A S S H Y Y M N E K K I I C V ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 50 Strand: + Start: 598 End: 747 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M F T L L Y E R K E D N M R V N I F H K H N C C I I H Y L S A H Y K T Y C F V F Q K R L F C T V K A .................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 663 End: 866 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M L H N S L S I S S L Q N L L F C I P K A A L L H G K S V G F A S Q K S R F R N A K V Q L S L F N R I I F T K L N E I T ............................................................................................................................................................................................................................................................................................................. Protein_Len: 33 Strand: + Start: 854 End: 952 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M S G F V E K H L R D S L L N Q L P L C R T D I Q I K P R Q T S F ....................................................................................................................................................................................................................... Protein_Len: 47 Strand: - Start: 955 End: 1095 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... H Y R I R K A I E I K C C V L A Y Y R T F V C M R D F C L C S F L V A I L F F I S I I R F R M ........................................................................ Protein_Len: 30 Strand: - Start: 705 End: 794 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Q K T N W F R S K Q V T F A Y T K C R L L A A K A V G F Y M ..................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 38 Strand: - Start: 688 End: 801 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... S M V F G I T K Y E L L P E K A R Y F R L N Q M A F S G S E C R W L V T I M .............................................................................................................................................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 605 End: 877 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ F R N N Q I G F A A R K C P L L T P K A D C F L R K R L A L T C N D S K L L I I K V F N F S I V R V T E D T S K Y F F M .................................................................................................................................................................................................................................................................................................. Protein_Len: 34 Strand: - Start: 546 End: 647 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. L F F Q Y H N S V S I M L F F H L M K V S N Y S R F S S L I R T F M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 30 Strand: - Start: 431 End: 520 .............................................................................................................................................................................................................................................................................................................................................................................................................................................. N F Q Y K L C R Y Y F I N S D V L V K Q M L Y R S N L I L M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 32 Strand: - Start: 293 End: 388 .................................................................................................................................................................................................................................................................................................... A W G S C T S F I S R G I K V N R L F M G I T V R L Y Y D R R M ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 50 Strand: - Start: 282 End: 431 ......................................................................................................................................................................................................................................................................................... I S T V G L W F L Y L I H K E W D E C K T S V N W Y N S A F L L R E E N L E S N N Q K N G A F T I M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 33 Strand: - Start: 170 End: 268 ......................................................................................................................................................................... L Y T D V T Q K H R K Y N S L P S Y R L R R R S C Y R E Y K N K M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 60 Strand: - Start: 1 End: 261 L D Y P T S I I L I E K I G A L M L A S I P Y Y I M P K D Y I P I L Q K S I G K T I P Y L R T G S G G A L V I G K M S M .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttattctttattaaatgcttattatattgatgttacgcccagccagaacaggtagagaatatgcttctcccaatcttcacatttcgtagaaacattccaatagttactcgcaaatagtaatctctcctcattcaattctgagttattctgtttattgcccgcaaaggtaatcaattaaattgatatttaaggcatctataataaaaaatgttactgtccactaaaactttttgcatcagataacgtgagttcaatataagaataacgccatataatttattttacttaaagaaagaactgataatgatttgatacacttatcatcagaaagaaatgaagcatcttcacactattatatgaacgaaaagaagataatatgcgtgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaattaaatgaaataactctcactgtttcatcagtggatttgtagaaaaacatctacgagatagcttgcttaaccaactccctttatgccgaactgacattcagataaaaccaaggcagacttccttttaatggtatctaatccttttagctatttctattttacaacaaaccaaagcatagtaacgagtaaaaacacacattctatcaaagcataaacaactaaacaacacagcaattaaaaaaaatatacttattatcctaaatcttattttattttcttaactttgcaaacgtaaaagagtgtagactcagttattaatcaaattcattaataaactaaa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 1025 End: 1054 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTAGTTGTTTATGCTTTGATAGAAT................................................................................................................. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttattctttattaaatgcttattatattgatgttacgcccagccagaacaggtagagaatatgcttctcccaatcttcacatttcgtagaaacattccaatagttactcgcaaatagtaatctctcctcattcaattctgagttattctgtttattgcccgcaaaggtaatcaattaaattgatatttaaggcatctataataaaaaatgttactgtccactaaaactttttgcatcagataacgtgagttcaatataagaataacgccatataatttattttacttaaagaaagaactgataatgatttgatacacttatcatcagaaagaaatgaagcatcttcacactattatatgaacgaaaagaagataatatgcgtgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaattaaatgaaataactctcactgtttcatcagtggatttgtagaaaaacatctacgagatagcttgcttaaccaactccctttatgccgaactgacattcagataaaaccaaggcagacttccttttaatggtatctaatccttttagctatttctattttacaacaaaccaaagcatagtaacgagtaaaaacacacattctatcaaagcataaacaactaaacaacacagcaattaaaaaaaatatacttattatcctaaatcttattttattttcttaactttgcaaacgtaaaagagtgtagactcagttattaatcaaattcattaataaactaaa Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 76 HP_score: -6.3 Tail_Score: -4.59944 Start: 592 End: 604 Full_Region: gttcatataatagtg tgaag atg cttca tttctttctgatgat ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgaagatgcttca................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 54 HP_score: -5.2 Tail_Score: -3.01712 Start: 696 End: 712 Full_Region: TCTATCAGCTCATTA CAAAAC CTATT GTTTTG TATTCCAAAAGCGGC .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACCTATTGTTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -14.8 Tail_Score: -3.53012 Start: 723 End: 773 Full_Region: TTTTGTATTCCAAAA GCGGCTCTTTTGCACGGTAAAAGC GTA GGTTTTGCATCGCAAAAGAGCCGC TTTCGCAACGCCAAA ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCTCTTTTGCACGGTAAAAGCGTAGGTTTTGCATCGCAAAAGAGCCGC.......................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -14.8 Tail_Score: -4.13767 Start: 723 End: 773 Full_Region: tttggcgttgcgaaa gcggctcttttgcgatgcaaaacc tac gcttttaccgtgcaaaagagccgc ttttggaatacaaaa ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaagagccgc.......................................................................................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PI1408:PI1409|PI1408:PI1409:glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein:->->:1329822..1330988 1167 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacttattctttattaaatgcttattatattgatgttacgcccagccagaacaggtagagaatatgcttctcccaatcttcacatttcgtagaaacattccaatagttactcgcaaatagtaatctctcctcattcaattctgagttattctgtttattgcccgcaaaggtaatcaattaaattgatatttaaggcatctataataaaaaatgttactgtccactaaaactttttgcatcagataacgtgagttcaatataagaataacgccatataatttattttacttaaagaaagaactgataatgatttgatacacttatcatcagaaagaaatgaagcatcttcacactattatatgaacgaaaagaagataatatgcgtgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaattaaatgaaataactctcactgtttcatcagtggatttgtagaaaaacatctacgagatagcttgcttaaccaactccctttatgccgaactgacattcagataaaaccaaggcagacttccttttaatggtatctaatccttttagctatttctattttacaacaaaccaaagcatagtaacgagtaaaaacacacattctatcaaagcataaacaactaaacaacacagcaattaaaaaaaatatacttattatcctaaatcttattttattttcttaactttgcaaacgtaaaagagtgtagactcagttattaatcaaattcattaataaactaaa Intra-Species Hit: Count: 39 Min: 256 Max: 1167 Len: 912 Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 0.0 bit: 1760.0 Len: 912 Query Start:256 Query End:1167 Subject Strand: POSITIVE Subject Start: 256 Subject End: 1167 ...............................................................................................................................................................................................................................................................acttattctttattaaatgcttattatattgatgttacgcccagccagaacaggtagagaatatgcttctcccaatcttcacatttcgtagaaacattccaatagttactcgcaaatagtaatctctcctcattcaattctgagttattctgtttattgcccgcaaaggtaatcaattaaattgatatttaaggcatctataataaaaaatgttactgtccactaaaactttttgcatcagataacgtgagttcaatataagaataacgccatataatttattttacttaaagaaagaactgataatgatttgatacacttatcatcagaaagaaatgaagcatcttcacactattatatgaacgaaaagaagataatatgcgtgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaattaaatgaaataactctcactgtttcatcagtggatttgtagaaaaacatctacgagatagcttgcttaaccaactccctttatgccgaactgacattcagataaaaccaaggcagacttccttttaatggtatctaatccttttagctatttctattttacaacaaaccaaagcatagtaacgagtaaaaacacacattctatcaaagcataaacaactaaacaacacagcaattnnnnnnnntatacttattatcctaaatcttattttattttcttaactttgcaaacgtaaaagagtgtagactcagttattaatcaaattcattaataaactaaa ...............................................................................................................................................................................................................................................................acttattctttattaaatgcttattatattgatgttacgcccagccagaacaggtagagaatatgcttctcccaatcttcacatttcgtagaaacattccaatagttactcgcaaatagtaatctctcctcattcaattctgagttattctgtttattgcccgcaaaggtaatcaattaaattgatatttaaggcatctataataaaaaatgttactgtccactaaaactttttgcatcagataacgtgagttcaatataagaataacgccatataatttattttacttaaagaaagaactgataatgatttgatacacttatcatcagaaagaaatgaagcatcttcacactattatatgaacgaaaagaagataatatgcgtgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaattaaatgaaataactctcactgtttcatcagtggatttgtagaaaaacatctacgagatagcttgcttaaccaactccctttatgccgaactgacattcagataaaaccaaggcagacttccttttaatggtatctaatccttttagctatttctattttacaacaaaccaaagcatagtaacgagtaaaaacacacattctatcaaagcataaacaactaaacaacacagcaattaaaaaaaatatacttattatcctaaatcttattttattttcttaactttgcaaacgtaaaagagtgtagactcagttattaatcaaattcattaataaactaaa Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 4.0E-61 bit: 238.0 Len: 212 Query Start:620 Query End:831 Subject Strand: NEGATIVE Subject Start: 475 Subject End: 686 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gaaaagaagataatatgcgtgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaattaa................................................................................................................................................................................................................................................................................................................................................ ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gaaaagaagataataaatatgtaaatatttttcgcaagtataactgttatataacttattatgtatcaacgcattacaaaacctattgttttgcattccaaaagcggctgttttgcatggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacagaattatctttacaaagttaa................................................................................................................................................................................................................................................................................................................................................ Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 2.0E-59 bit: 232.0 Len: 241 Query Start:614 Query End:854 Subject Strand: NEGATIVE Subject Start: 84 Subject End: 324 .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atgaacgaaaagaagataatatgcgtgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaattaaatgaaataactctcactgtttca......................................................................................................................................................................................................................................................................................................................... .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atgaacgaaaagaaggtaataaaggtgtaaatatttttcgtaaagataattattacttaactatctaaccatcaacgcattataaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcagtttttaacagaattatctttacaaaattaaacagaaaatctctcactgtttca......................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 2.0E-53 bit: 212.0 Len: 171 Query Start:684 Query End:854 Subject Strand: NEGATIVE Subject Start: 141 Subject End: 311 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaattaaatgaaataactctcactgtttca......................................................................................................................................................................................................................................................................................................................... ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................atcagcgcattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaatgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacggaattatctttacaagattaaaccaaaaaactctcactatttca......................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 2.0E-53 bit: 212.0 Len: 207 Query Start:621 Query End:827 Subject Strand: NEGATIVE Subject Start: 50 Subject End: 256 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaagaagataatatgcgtgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaa.................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaagaagctaataaaagtgtaaatatttttcacaagcttacctattacgtaactatctaaccatcagcgtattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaacggaattatctttacaaaa.................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 1.0E-51 bit: 206.0 Len: 136 Query Start:692 Query End:827 Subject Strand: POSITIVE Subject Start: 90 Subject End: 225 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................attacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaa.................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................attacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaaaa.................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 5.0E-51 bit: 204.0 Len: 135 Query Start:693 Query End:827 Subject Strand: POSITIVE Subject Start: 148 Subject End: 282 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaa.................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa.................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 2.0E-50 bit: 202.0 Len: 134 Query Start:693 Query End:826 Subject Strand: NEGATIVE Subject Start: 60 Subject End: 193 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaa..................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttacaaaacctattgttttgcattctaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttgtcactttttaacagaattatctttacaaa..................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 8.0E-50 bit: 200.0 Len: 189 Query Start:638 Query End:826 Subject Strand: NEGATIVE Subject Start: 310 Subject End: 498 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaa..................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtgtaaatatttttcacagacacacctattgtgtaattctcttgttatcaacgcattacaagacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaaagaaattatctttacaaa..................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 2.0E-47 bit: 192.0 Len: 137 Query Start:691 Query End:827 Subject Strand: POSITIVE Subject Start: 91 Subject End: 227 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaa.................................................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaaaa.................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 8.0E-47 bit: 190.0 Len: 140 Query Start:693 Query End:832 Subject Strand: NEGATIVE Subject Start: 143 Subject End: 282 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaattaaa............................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcggttatcactttttaacggaattatctttacaaagttaaa............................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 3.0E-46 bit: 188.0 Len: 135 Query Start:692 Query End:826 Subject Strand: NEGATIVE Subject Start: 215 Subject End: 349 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................attacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaa..................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................attacaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcatcgtcaaaacgcagttatcactttttaagagaataatctttacaaa..................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 3.0E-46 bit: 188.0 Len: 135 Query Start:696 Query End:830 Subject Strand: POSITIVE Subject Start: 304 Subject End: 438 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaatta................................................................................................................................................................................................................................................................................................................................................. .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaatta................................................................................................................................................................................................................................................................................................................................................. Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 3.0E-46 bit: 188.0 Len: 131 Query Start:697 Query End:827 Subject Strand: POSITIVE Subject Start: 111 Subject End: 241 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaa.................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaa.................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 2.0E-44 bit: 182.0 Len: 132 Query Start:696 Query End:827 Subject Strand: NEGATIVE Subject Start: 114 Subject End: 245 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaa.................................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacgctaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcgctttttaacagaataatctttacaaaa.................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 7.0E-44 bit: 180.0 Len: 135 Query Start:697 Query End:831 Subject Strand: NEGATIVE Subject Start: 195 Subject End: 329 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaattaa................................................................................................................................................................................................................................................................................................................................................ ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcgttccaaaaacggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaacggaattatctttacaaagttaa................................................................................................................................................................................................................................................................................................................................................ Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 7.0E-44 bit: 180.0 Len: 214 Query Start:613 Query End:826 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 470 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatgaacgaaaagaagataat-atgcgtgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaa..................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatgaacgaaaagaagataatcaagc-tgtaaatatttttcacaaacataactattgcataacttgttcgttatcagtgtattgcaaaacctacgcttttgcgttccaaaagcggctgttttgtacggtaaaagcgtaggttttgcatcgcaaaagaaccgctttcgcaacgttaaagcgcagttatcactttttaacggaattatatttacaaa..................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 7.0E-44 bit: 180.0 Len: 171 Query Start:638 Query End:808 Subject Strand: NEGATIVE Subject Start: 120 Subject End: 290 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaa....................................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtgtaaatatttttcacaggcataactattgtgtaacttacttgttatcaacgcattgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaa....................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 7.0E-44 bit: 180.0 Len: 135 Query Start:693 Query End:827 Subject Strand: NEGATIVE Subject Start: 185 Subject End: 319 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaa.................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttacaaaacctattgtttcgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcacaaaagagccgctttcgcaacgccaaagcgcagttatcaatttttaagagaattatctttacaaaa.................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 2.0E-41 bit: 172.0 Len: 143 Query Start:685 Query End:827 Subject Strand: NEGATIVE Subject Start: 166 Subject End: 308 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaa.................................................................................................................................................................................................................................................................................................................................................... ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tcagcgcattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaacagccgctttcgcaatgtcaaaacgcagttatcaatttttaagagaattatctttacaaaa.................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 1.0E-39 bit: 167.0 Len: 136 Query Start:691 Query End:826 Subject Strand: POSITIVE Subject Start: 381 Subject End: 516 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaa..................................................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattacaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaacagccgctttcgcaatgccaaatcgaaattatcatttttcatcagaattatctttacaaa..................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 1.0E-39 bit: 167.0 Len: 136 Query Start:692 Query End:827 Subject Strand: NEGATIVE Subject Start: 146 Subject End: 281 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................attacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaa.................................................................................................................................................................................................................................................................................................................................................... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................attacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcattttttaagagaattatctttacaaaa.................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 1.0E-39 bit: 167.0 Len: 132 Query Start:696 Query End:827 Subject Strand: POSITIVE Subject Start: 97 Subject End: 228 .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaa.................................................................................................................................................................................................................................................................................................................................................... .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................caaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaaaa.................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 2.0E-38 bit: 163.0 Len: 134 Query Start:693 Query End:826 Subject Strand: POSITIVE Subject Start: 251 Subject End: 384 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaa..................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaaa..................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 2.0E-35 bit: 153.0 Len: 137 Query Start:691 Query End:827 Subject Strand: NEGATIVE Subject Start: 201 Subject End: 336 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaa.................................................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgcaaac-agccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaaaa.................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1324_PI1325|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1243086,1243554]|469 HSP 1 e-value: 1.0E-33 bit: 147.0 Len: 194 Query Start:639 Query End:832 Subject Strand: POSITIVE Subject Start: 204 Subject End: 397 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaattaaa............................................................................................................................................................................................................................................................................................................................................... ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaatattaaa............................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 2.0E-32 bit: 143.0 Len: 108 Query Start:681 Query End:788 Subject Strand: NEGATIVE Subject Start: 49 Subject End: 156 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaa........................................................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tctatcaacgcattacaaaacctattgttttgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccactttcgcaacgtcaaa........................................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 3.0E-31 bit: 139.0 Len: 138 Query Start:691 Query End:828 Subject Strand: NEGATIVE Subject Start: 140 Subject End: 277 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaat................................................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattataaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaagagaattatctttacaaaat................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 1.0E-27 bit: 127.0 Len: 144 Query Start:638 Query End:781 Subject Strand: NEGATIVE Subject Start: 137 Subject End: 280 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaa.................................................................................................................................................................................................................................................................................................................................................................................................. .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtgtaaatatttttcacaagcatagttgttgtctaactcgctatatttcaacgtattgcaaaacctattgttttgcactccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgttttcgcaa.................................................................................................................................................................................................................................................................................................................................................................................................. Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 1.0E-26 bit: 123.0 Len: 138 Query Start:691 Query End:828 Subject Strand: NEGATIVE Subject Start: 190 Subject End: 327 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaat................................................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattacaaaatctattgttttgcgtcctaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgtaaaacagccgctttcgcaacgtcaaagtgcagttatcactttttaacgaaattatctttacaaaat................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 1.0E-23 bit: 113.0 Len: 137 Query Start:691 Query End:827 Subject Strand: NEGATIVE Subject Start: 79 Subject End: 215 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaa.................................................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattacaaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcatcgcaaaacagccgctttcgcaatgccaaagcgcaattaccacttttcaacgaaattatctttacaaaa.................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 9.0E-22 bit: 107.0 Len: 142 Query Start:692 Query End:833 Subject Strand: NEGATIVE Subject Start: 181 Subject End: 322 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................attacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaattaaat.............................................................................................................................................................................................................................................................................................................................................. ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................attacaaaacctattgttttgcattccaaaagcgtaggttttacacgataaaagcggctgttttgcgttgcaaaacagccactttcgcaatgtcaaagcgcagttattactttttaacggaattatttttacatatttaaat.............................................................................................................................................................................................................................................................................................................................................. Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 4.0E-21 bit: 105.0 Len: 129 Query Start:697 Query End:825 Subject Strand: NEGATIVE Subject Start: 113 Subject End: 241 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaa...................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggttgttttgcatcgtaaaacagctgcttttgcaatgtcaaaaggcagttatcactttttaacggaattatttttacaa...................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 2.0E-19 bit: 99.6 Len: 138 Query Start:691 Query End:828 Subject Strand: POSITIVE Subject Start: 341 Subject End: 478 ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaat................................................................................................................................................................................................................................................................................................................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cattgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagtggcgcttttgcatcgcaaaacctacgctttcgcaatgtcaaagcgcagttatcactttttaacaatgttatctttacaaaat................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 2.0E-19 bit: 99.6 Len: 130 Query Start:697 Query End:826 Subject Strand: POSITIVE Subject Start: 179 Subject End: 308 ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaa..................................................................................................................................................................................................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatctttacaaa..................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 1.0E-17 bit: 93.7 Len: 135 Query Start:613 Query End:747 Subject Strand: NEGATIVE Subject Start: 224 Subject End: 358 ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatgaacgaaaagaagataatatgcgtgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcg.................................................................................................................................................................................................................................................................................................................................................................................................................................... ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................tatgaacgaaaagaagataataaaagtgtaaatatttttcacaagcgtaaccattgcataactatctcactatcaagactttgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcg.................................................................................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 5.0E-14 bit: 81.8 Len: 153 Query Start:636 Query End:788 Subject Strand: POSITIVE Subject Start: 46 Subject End: 198 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcgtgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaa........................................................................................................................................................................................................................................................................................................................................................................................... ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gcgtgtaaatatttttcacaagcaaagatattacataactaactcgttatcaacacattgcaaaacctattgttttgcattccaaaagcgtaggttttacacggcaaaagcggctgttttgcgttgcaaaacagccgctttcgcaatgccaaa........................................................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 8.0E-13 bit: 77.8 Len: 123 Query Start:705 Query End:827 Subject Strand: NEGATIVE Subject Start: 226 Subject End: 348 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaa.................................................................................................................................................................................................................................................................................................................................................... ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ttgttttgcgttccaaaagcggctgttttgcaaggtaaaagagccgcttttggcgtgcaaaacctacgctttcgcaacgtcaaagcgcagttgtcactttttaacggaattatttttacaaaa.................................................................................................................................................................................................................................................................................................................................................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 3.0E-12 bit: 75.8 Len: 190 Query Start:638 Query End:827 Subject Strand: POSITIVE Subject Start: 132 Subject End: 321 .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaa.................................................................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................gtgtaaatatttttcacaagcataactgttcggtaactatctatacatcagcgtgttataaaacgtgttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaa.................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ ACUUAUUCUUUAUUAAAUGCUUAUUAUAUUGAUGUUACGCCCAGCCAGAACAGGUAGAGAAUAUGCUUCUCCCAAUCUUCACAUUUCGUAGAAACAUUCCAAUAGUUACUCGCAAAUAGUAAUCUCUCCUCAUUCAAUUCUGAGUUAUUCUGUUUAUUGCCCGCAAAGGUAAUCAAUUAAAUUGAUAUUUAAGGCAUCUAUAAUAAAAAAUGUUACUGUCCACUAAAACUUUUUGCAUCAGAUAACGUGAGUUCAAUAUAAGAAUAACGCCAUAUAAUUUAUUUUACUUAAAGAAAGAACUGAUAAUGAUUUGAUACACUUAUCAUCAGAAAGAAAUGAAGCAUCUUCACACUAUUAUAUGAACGAAAAGAAGAUAAUAUGCGUGUAAAUAUUUUUCACAAACAUAACUGUUGCAUAAUUCACUAUCUAUCAGCUCAUUACAAAACCUAUUGUUUUGUAUUCCAAAAGCGGCUCUUUUGCACGGUAAAAGCGUAGGUUUUGCAUCGCAAAAGAGCCGCUUUCGCAACGCCAAAGUACAGUUAUCACUUUUUAACAGAAUUAUUUUUACAAAAUUAAAUGAAAUAACUCUCACUGUUUCAUCAGUGGAUUUGUAGAAAAACAUCUACGAGAUAGCUUGCUUAACCAACUCCCUUUAUGCCGAACUGACAUUCAGAUAAAACCAAGGCAGACUUCCUUUUAAUGGUAUCUAAUCCUUUUAGCUAUUUCUAUUUUACAACAAACCAAAGCAUAGUAACGAGUAAAAACACACAUUCUAUCAAAGCAUAAACAACUAAACAACACAGCAAUUAAAAAAAAUAUACUUAUUAUCCUAAAUCUUAUUUUAUUUUCUUAACUUUGCAAACGUAAAAGAGUGUAGACUCAGUUAUUAAUCAAAUUCAUUAAUAAACUAAA .((((((((((.....((((((...........((((.((..(((.......((..(((((.....))))))).........((((((((((............((((((.......))))))............(((((((.((((((((...(((((...(((((((..((((((...))))))......((((....(((((.....))))).)))).........))))))).......(((....))))))))..))))))))..((((((((.....................(((((.((((..........)))).))))).......(((((...)))))....))))))))...((((((..((((((....(((.(((....))))))..........(((((........................((((((((.....)))))))).....((((((((((((((((...((((((.(...).))))))...)))))))))))))))).)))))...........)))))).))))))..))))))).((((((((((.(((.((((((((........))))))))...))).))))))))))....)))))))))).))).)).))))..((((...((((((....(((.....)))........((((.(((...((.......))..)))...))))..............................))))))....))))...................))))))..................((((......((((((........................)))))).......)))).......)))))))).))....((((((((((.......)))))).))))... (-169.78) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUUAGUUUAUUAAUGAAUUUGAUUAAUAACUGAGUCUACACUCUUUUACGUUUGCAAAGUUAAGAAAAUAAAAUAAGAUUUAGGAUAAUAAGUAUAUUUUUUUUAAUUGCUGUGUUGUUUAGUUGUUUAUGCUUUGAUAGAAUGUGUGUUUUUACUCGUUACUAUGCUUUGGUUUGUUGUAAAAUAGAAAUAGCUAAAAGGAUUAGAUACCAUUAAAAGGAAGUCUGCCUUGGUUUUAUCUGAAUGUCAGUUCGGCAUAAAGGGAGUUGGUUAAGCAAGCUAUCUCGUAGAUGUUUUUCUACAAAUCCACUGAUGAAACAGUGAGAGUUAUUUCAUUUAAUUUUGUAAAAAUAAUUCUGUUAAAAAGUGAUAACUGUACUUUGGCGUUGCGAAAGCGGCUCUUUUGCGAUGCAAAACCUACGCUUUUACCGUGCAAAAGAGCCGCUUUUGGAAUACAAAACAAUAGGUUUUGUAAUGAGCUGAUAGAUAGUGAAUUAUGCAACAGUUAUGUUUGUGAAAAAUAUUUACACGCAUAUUAUCUUCUUUUCGUUCAUAUAAUAGUGUGAAGAUGCUUCAUUUCUUUCUGAUGAUAAGUGUAUCAAAUCAUUAUCAGUUCUUUCUUUAAGUAAAAUAAAUUAUAUGGCGUUAUUCUUAUAUUGAACUCACGUUAUCUGAUGCAAAAAGUUUUAGUGGACAGUAACAUUUUUUAUUAUAGAUGCCUUAAAUAUCAAUUUAAUUGAUUACCUUUGCGGGCAAUAAACAGAAUAACUCAGAAUUGAAUGAGGAGAGAUUACUAUUUGCGAGUAACUAUUGGAAUGUUUCUACGAAAUGUGAAGAUUGGGAGAAGCAUAUUCUCUACCUGUUCUGGCUGGGCGUAACAUCAAUAUAAUAAGCAUUUAAUAAAGAAUAAGU (((((((.((((((.......))))))))))))).......(((((......(((..(((((((((((.........(((((......)))))....)))))))))))..(((((((..((((((((.((..(((((((((((...(((((((((...((((...((........)).))))....(((((((((..((((..(((((.((.......))..))))))))).((((((((...(((((.....)))))...(((((.(((((.....))))).)))(((((......)))))....))...))))))))......)))))))))..........))))))))))))))))))))..)))))))))).......(((((.(((((((((((((((((((....((((.......))))....)))))))))))))))))))...((((((((.....))))))))...(((((((((.(((.((((.((((......(((((.((((((.....)))))).)))))...((((((..((.((((((((((((((........((((((((..((((((.(((((.((........))))))).(((((.(((...(((((((...((((.(((((((..(((.......)))...))))))).)))).......((((....)))).........)))))))..)))(((((((((.((((((...))))))....)))).)))))......)))))...))))))..))))))))......)))))))..((((.(((.........))).)).))..)))))))))..)))))).)))))))).))).)))))..)))).))))).....)))))))....)))......)))))...... (-212.66) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 889 520 471 212 163 pint:PI2046|5end_hypothetical_protein_1999030..1999260_POSITIVE 885 520 471 57 8 pint:PI0638|5end_hypothetical_protein_582218..582448_POSITIVE 877 530 481 129 80 pint:PI0867|5end_hypothetical_protein_803859..804089_POSITIVE 877 530 481 129 80 pint:PI0119|5end_hypothetical_protein_111506..111736_POSITIVE 866 510 461 65 16 pint:PI1204|5end_hypothetical_protein_1124430..1124660_POSITIVE 862 500 451 206 157 pint:PI0827|5end_hypothetical_protein_763991..764221_POSITIVE 836 530 481 216 167 pint:PI0991|5end_conserved_hypothetical_protein_915309..915539_POSITIVE 834 520 471 60 11 pint:PI0568|5end_hypothetical_protein_512950..513180_POSITIVE 818 530 481 216 167 pint:PI1437|5end_hypothetical_protein_1356088..1356318_POSITIVE 818 530 481 89 40 pint:PI1436|5end_hypothetical_protein_1355961..1356191_POSITIVE 817 530 481 89 40 pint:PI2022|5end_hypothetical_protein_1978631..1978861_POSITIVE 817 530 481 181 132 pint:PI1804|5end_hypothetical_protein_1738109..1738339_POSITIVE 811 510 461 216 167 pint:PI0887|5end_hypothetical_protein_817536..817766_POSITIVE 811 510 461 50 1 pint:PI0089|5end_hypothetical_protein_88162..88392_POSITIVE 801 530 481 197 149 pint:PI0211|5end_hypothetical_protein_204067..204297_POSITIVE 789 500 451 219 170 pint:PI1333|5end_conserved_hypothetical_protein_1250777..1251007_POSITIVE 788 500 451 192 143 pint:PI0024|5end_hypothetical_protein_28378..28608_POSITIVE 785 540 491 56 7 pint:PI0866|5end_hypothetical_protein_803776..804006_POSITIVE 785 530 482 49 1 pint:PI0815|5end_hypothetical_protein_754475..754705_POSITIVE 778 530 481 68 19 pint:PI1786|5end_hypothetical_protein_1718124..1718354_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 936 510 461 151 102 pint:PI0638|3end_hypothetical_protein_582402..582552_POSITIVE 936 510 461 146 97 pint:PI0637|3end_hypothetical_protein_582397..582547_POSITIVE 884 528 481 120 73 pint:PI0819|3end_hypothetical_protein_759919..760069_POSITIVE 866 510 461 151 102 pint:PI0815|3end_hypothetical_protein_754677..754827_POSITIVE 846 510 461 151 102 pint:PI0081|3end_hypothetical_protein_80700..80850_POSITIVE 841 510 464 151 105 pint:PI1252|3end_hypothetical_protein_1175440..1175590_POSITIVE 834 520 471 85 36 pint:PI0567|3end_hypothetical_protein_513055..513205_POSITIVE 811 510 461 151 102 pint:PI0568|3end_hypothetical_protein_513131..513281_POSITIVE 788 500 451 141 92 pint:PI0095|3end_hypothetical_protein_91850..92000_POSITIVE 770 498 451 151 104 pint:PI1797|3end_hypothetical_protein_1731559..1731709_POSITIVE 770 498 451 151 104 pint:PI0885|3end_hypothetical_protein_817563..817713_POSITIVE 770 498 451 151 104 pint:PI0866|3end_hypothetical_protein_803993..804143_POSITIVE 770 498 451 151 104 pint:PI0820|3end_hypothetical_protein_759980..760130_POSITIVE 770 498 451 151 104 pint:PI0118|3end_hypothetical_protein_111640..111790_POSITIVE 770 498 451 151 104 pint:PI0089|3end_hypothetical_protein_88355..88505_POSITIVE 736 510 461 151 102 pint:PI1155|3end_hypothetical_protein_1080352..1080502_POSITIVE 699 498 451 151 104 pint:PI1041|3end_hypothetical_protein_960675..960825_POSITIVE 694 498 451 151 104 pint:PI1005|3end_hypothetical_protein_926481..926631_POSITIVE 655 490 441 82 33 pint:PI0560|3end_hypothetical_protein_508910..509060_POSITIVE 634 530 481 144 95 pint:PI1521|3end_hypothetical_protein_1441461..1441611_POSITIVE