Origin IGS: taaacgtaaaaacacggtcgctaactgttaaattctaaagcgtgaaacttcgcaggaagggcactttttcaaacaaatatcttctcgctctcaaataatgccactttttacgtgcaacggaaaaggcacagacaggcagctactaacaaacgaagtgggtagtaatgtgcaatcattactctattttatggtaacaaaacaaataagaaagacgtaaaaaagaataatataaagctgcaaaaactacactttcacactgcaaaagcgtaggttttgcaaggtaaaagcggctgttttgcatcacaaaagaggcacttttgcaaaacgagaatctatttctcaactttcaaacagagttttaactgtttcacgtttctattttagctcattcccaaatgttaacagactcaattttattatactttattcacaatcagaaaatagactcatactgaactttctcccaataattattcagctatcttcccacaaaataaaactttcagcatcattattccatcgctacaactaaaattcgtatctttgcaatatcctatttcaagggtcaagacaatattactgctgataataatcttagaaaaatatctttataaaaccataaactt .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 aagtttatggttttataaagatatttttctaagattattatcagcagtaatattgtcttgacccttgaaataggatattgcaaagatacgaattttagttgtagcgatggaataatgatgctgaaagttttattttgtgggaagatagctgaataattattgggagaaagttcagtatgagtctattttctgattgtgaataaagtataataaaattgagtctgttaacatttgggaatgagctaaaatagaaacgtgaaacagttaaaactctgtttgaaagttgagaaatagattctcgttttgcaaaagtgcctcttttgtgatgcaaaacagccgcttttaccttgcaaaacctacgcttttgcagtgtgaaagtgtagtttttgcagctttatattattcttttttacgtctttcttatttgttttgttaccataaaatagagtaatgattgcacattactacccacttcgtttgttagtagctgcctgtctgtgccttttccgttgcacgtaaaaagtggcattatttgagagcgagaagatatttgtttgaaaaagtgcccttcctgcgaagtttcacgctttagaatttaacagttagcgaccgtgtttttacgttta Mask Tandem Repeat Region ================================================ taaacgtaaaaacacggtcgctaactgttaaattctaaagcgtgaaacttcgcaggaagggcactttttcaaacaaatatcttctcgctctcaaataatgccactttttacgtgcaacggaaaaggcacagacaggcagctactaacaaacgaagtgggtagtaatgtgcaatcattactctattttatggtaacaaaacaaataagaaagacgtaaaaaagaataatataaagctgcaaaaactacactttcacactgcaaaagcgtaggttttgcaaggtaaaagcggctgttttgcatcacaaaagaggcacttttgcaaaacgagaatctatttctcaactttcaaacagagttttaactgtttcacgtttctattttagctcattcccaaatgttaacagactcaattttattatactttattcacaatcagaaaatagactcatactgaactttctcccaataattattcagctatcttcccacaaaataaaactttcagcatcattattccatcgctacaactaaaattcgtatctttgcaatatcctatttcaagggtcaagacaatattactgctgataataatcttagaaaaatatctttataaaaccataaactt Find is-nt database================================================ Query_seq: PI1399:PI1400|PI1399:PI1400:hypothetical protein:hypothetical protein:->->:1320905..1321530 626 taaacgtaaaaacacggtcgctaactgttaaattctaaagcgtgaaacttcgcaggaagggcactttttcaaacaaatatcttctcgctctcaaataatgccactttttacgtgcaacggaaaaggcacagacaggcagctactaacaaacgaagtgggtagtaatgtgcaatcattactctattttatggtaacaaaacaaataagaaagacgtaaaaaagaataatataaagctgcaaaaactacactttcacactgcaaaagcgtaggttttgcaaggtaaaagcggctgttttgcatcacaaaagaggcacttttgcaaaacgagaatctatttctcaactttcaaacagagttttaactgtttcacgtttctattttagctcattcccaaatgttaacagactcaattttattatactttattcacaatcagaaaatagactcatactgaactttctcccaataattattcagctatcttcccacaaaataaaactttcagcatcattattccatcgctacaactaaaattcgtatctttgcaatatcctatttcaagggtcaagacaatattactgctgataataatcttagaaaaatatctttataaaaccataaactt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1399:PI1400|PI1399:PI1400:hypothetical protein:hypothetical protein:->->:1320905..1321530 626 taaacgtaaaaacacggtcgctaactgttaaattctaaagcgtgaaacttcgcaggaagggcactttttcaaacaaatatcttctcgctctcaaataatgccactttttacgtgcaacggaaaaggcacagacaggcagctactaacaaacgaagtgggtagtaatgtgcaatcattactctattttatggtaacaaaacaaataagaaagacgtaaaaaagaataatataaagctgcaaaaactacactttcacactgcaaaagcgtaggttttgcaaggtaaaagcggctgttttgcatcacaaaagaggcacttttgcaaaacgagaatctatttctcaactttcaaacagagttttaactgtttcacgtttctattttagctcattcccaaatgttaacagactcaattttattatactttattcacaatcagaaaatagactcatactgaactttctcccaataattattcagctatcttcccacaaaataaaactttcagcatcattattccatcgctacaactaaaattcgtatctttgcaatatcctatttcaagggtcaagacaatattactgctgataataatcttagaaaaatatctttataaaaccataaactt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1399:PI1400|PI1399:PI1400:hypothetical protein:hypothetical protein:->->:1320905..1321530 626 taaacgtaaaaacacggtcgctaactgttaaattctaaagcgtgaaacttcgcaggaagggcactttttcaaacaaatatcttctcgctctcaaataatgccactttttacgtgcaacggaaaaggcacagacaggcagctactaacaaacgaagtgggtagtaatgtgcaatcattactctattttatggtaacaaaacaaataagaaagacgtaaaaaagaataatataaagctgcaaaaactacactttcacactgcaaaagcgtaggttttgcaaggtaaaagcggctgttttgcatcacaaaagaggcacttttgcaaaacgagaatctatttctcaactttcaaacagagttttaactgtttcacgtttctattttagctcattcccaaatgttaacagactcaattttattatactttattcacaatcagaaaatagactcatactgaactttctcccaataattattcagctatcttcccacaaaataaaactttcagcatcattattccatcgctacaactaaaattcgtatctttgcaatatcctatttcaagggtcaagacaatattactgctgataataatcttagaaaaatatctttataaaaccataaactt Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taaacgtaaaaacacggtcgctaactgttaaattctaaagcgtgaaacttcgcaggaagggcactttttcaaacaaatatcttctcgctctcaaataatgccactttttacgtgcaacggaaaaggcacagacaggcagctactaacaaacgaagtgggtagtaatgtgcaatcattactctattttatggtaacaaaacaaataagaaagacgtaaaaaagaataatataaagctgcaaaaactacactttcacactgcaaaagcgtaggttttgcaaggtaaaagcggctgttttgcatcacaaaagaggcacttttgcaaaacgagaatctatttctcaactttcaaacagagttttaactgtttcacgtttctattttagctcattcccaaatgttaacagactcaattttattatactttattcacaatcagaaaatagactcatactgaactttctcccaataattattcagctatcttcccacaaaataaaactttcagcatcattattccatcgctacaactaaaattcgtatctttgcaatatcctatttcaagggtcaagacaatattactgctgataataatcttagaaaaatatctttataaaaccataaactt Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 32 End: 214 ............................... M L K R E T S Q E G H F F K Q I S S R S Q I M P L F T C N G K G T D R Q L L T N E V G S N V Q S L L Y F M V T K Q I R K ............................................................................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 32 Strand: + Start: 172 End: 267 ........................................................................................................................................................................... M I T L F Y G N K T N K K D V K K N N I K L Q K L H F H T A K A ....................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 36 Strand: + Start: 274 End: 381 ................................................................................................................................................................................................................................................................................. M Q G K S G C F A S Q K R H F C K T R I Y F S T F K Q S F N C F T F L F ..................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 363 End: 452 .......................................................................................................................................................................................................................................................................................................................................................................... M F H V S I L A H S Q M L T D S I L L Y F I H N Q K I D S Y .............................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 257 End: 529 ................................................................................................................................................................................................................................................................ M Q K R R F C K V K A A V L H H K R G T F A K R E S I S Q L S N R V L T V S R F Y F S S F P N V N R L N F I I L Y S Q S ................................................................................................. Protein_Len: 31 Strand: + Start: 519 End: 611 ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M A T T K I R I F A I S Y F K G Q D N I T A D N N L R K I S L ............... Protein_Len: 48 Strand: + Start: 481 End: 624 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ M F P Q N K T F S I I I P S L Q L K F V S L Q Y P I S R V K T I L L L I I I L E K Y L Y K T I N .. Protein_Len: 40 Strand: - Start: 474 End: 593 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... E A I K G C F L V K L M M I G D S C S F N T D K C Y G I E L T L V I N S S I I M ................................. Protein_Len: 55 Strand: - Start: 179 End: 343 .................................................................................................................................................................................. E I K H Y C F L Y S L R L F S Y Y L A A F V V S E C Q L L T P K A L Y F R S N Q M V F S A S K C F S F R N R M ........................................................................................................................................................................................................................................................................................... Protein_Len: 34 Strand: - Start: 38 End: 139 ..................................... L T F S R L F P V K E F L Y R R A R L Y H W K K R A V S F A C V P M ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... taaacgtaaaaacacggtcgctaactgttaaattctaaagcgtgaaacttcgcaggaagggcactttttcaaacaaatatcttctcgctctcaaataatgccactttttacgtgcaacggaaaaggcacagacaggcagctactaacaaacgaagtgggtagtaatgtgcaatcattactctattttatggtaacaaaacaaataagaaagacgtaaaaaagaataatataaagctgcaaaaactacactttcacactgcaaaagcgtaggttttgcaaggtaaaagcggctgttttgcatcacaaaagaggcacttttgcaaaacgagaatctatttctcaactttcaaacagagttttaactgtttcacgtttctattttagctcattcccaaatgttaacagactcaattttattatactttattcacaatcagaaaatagactcatactgaactttctcccaataattattcagctatcttcccacaaaataaaactttcagcatcattattccatcgctacaactaaaattcgtatctttgcaatatcctatttcaagggtcaagacaatattactgctgataataatcttagaaaaatatctttataaaaccataaactt Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taaacgtaaaaacacggtcgctaactgttaaattctaaagcgtgaaacttcgcaggaagggcactttttcaaacaaatatcttctcgctctcaaataatgccactttttacgtgcaacggaaaaggcacagacaggcagctactaacaaacgaagtgggtagtaatgtgcaatcattactctattttatggtaacaaaacaaataagaaagacgtaaaaaagaataatataaagctgcaaaaactacactttcacactgcaaaagcgtaggttttgcaaggtaaaagcggctgttttgcatcacaaaagaggcacttttgcaaaacgagaatctatttctcaactttcaaacagagttttaactgtttcacgtttctattttagctcattcccaaatgttaacagactcaattttattatactttattcacaatcagaaaatagactcatactgaactttctcccaataattattcagctatcttcccacaaaataaaactttcagcatcattattccatcgctacaactaaaattcgtatctttgcaatatcctatttcaagggtcaagacaatattactgctgataataatcttagaaaaatatctttataaaaccataaactt Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 53 HP_score: -4.2 Tail_Score: -3.50302 Start: 162 End: 179 Full_Region: CAAACGAAGTGGGTA GTAATG TGCAAT CATTAC TCTATTTTATGGTAA .................................................................................................................................................................GTAATGTGCAATCATTAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -9.6 Tail_Score: -4.41309 Start: 234 End: 280 Full_Region: aacagccgcttttac cttgcaaaacctacgcttttgc agt gtgaaagtgtagtttttgcagc tttatattattcttt .........................................................................................................................................................................................................................................cttgcaaaacctacgcttttgcagtgtgaaagtgtagtttttgcagc.......................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 91 HP_score: -13.1 Tail_Score: -3.22345 Start: 235 End: 279 Full_Region: acagccgcttttacc ttgcaaaacctacgcttttgc agt gtgaaagtgtagtttttgcag ctttatattattctt ..........................................................................................................................................................................................................................................ttgcaaaacctacgcttttgcagtgtgaaagtgtagtttttgcag........................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 93 HP_score: -14.4 Tail_Score: -2.5178 Start: 236 End: 278 Full_Region: cagccgcttttacct tgcaaaacctacgcttttgc agt gtgaaagtgtagtttttgca gctttatattattct ...........................................................................................................................................................................................................................................tgcaaaacctacgcttttgcagtgtgaaagtgtagtttttgca............................................................................................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 93 HP_score: -8.8 Tail_Score: -4.6526 Start: 244 End: 270 Full_Region: tttaccttgcaaaac ctacgcttttgc agt gtgaaagtgtag tttttgcagctttat ...................................................................................................................................................................................................................................................ctacgcttttgcagtgtgaaagtgtag.................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 79 HP_score: -10.0 Tail_Score: -3.24823 Start: 247 End: 289 Full_Region: gtgatgcaaaacagc cgcttttaccttgcaaaacc tac gcttttgcagtgtgaaagtg tagtttttgcagctt ......................................................................................................................................................................................................................................................cgcttttaccttgcaaaacctacgcttttgcagtgtgaaagtg................................................................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 57 HP_score: -3.0 Tail_Score: -4.08767 Start: 326 End: 342 Full_Region: actctgtttgaaagt tgagaa ataga ttctcg ttttgcaaaagtgcc .....................................................................................................................................................................................................................................................................................................................................tgagaaatagattctcg............................................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 50 HP_score: -4.3 Tail_Score: -3.05046 Start: 327 End: 341 Full_Region: ctctgtttgaaagtt gagaa ataga ttctc gttttgcaaaagtgc ......................................................................................................................................................................................................................................................................................................................................gagaaatagattctc............................................................................................................................................................................................................................................................................................. Find igs database================================================ Query_seq: PI1399:PI1400|PI1399:PI1400:hypothetical protein:hypothetical protein:->->:1320905..1321530 626 taaacgtaaaaacacggtcgctaactgttaaattctaaagcgtgaaacttcgcaggaagggcactttttcaaacaaatatcttctcgctctcaaataatgccactttttacgtgcaacggaaaaggcacagacaggcagctactaacaaacgaagtgggtagtaatgtgcaatcattactctattttatggtaacaaaacaaataagaaagacgtaaaaaagaataatataaagctgcaaaaactacactttcacactgcaaaagcgtaggttttgcaaggtaaaagcggctgttttgcatcacaaaagaggcacttttgcaaaacgagaatctatttctcaactttcaaacagagttttaactgtttcacgtttctattttagctcattcccaaatgttaacagactcaattttattatactttattcacaatcagaaaatagactcatactgaactttctcccaataattattcagctatcttcccacaaaataaaactttcagcatcattattccatcgctacaactaaaattcgtatctttgcaatatcctatttcaagggtcaagacaatattactgctgataataatcttagaaaaatatctttataaaaccataaactt Intra-Species Hit: Count: 1 Min: 1 Max: 626 Len: 626 Subject: pint_PI1399_PI1400|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1320905,1321530]|626 HSP 1 e-value: 0.0 bit: 759.0 Len: 383 Query Start:244 Query End:626 Subject Strand: POSITIVE Subject Start: 244 Subject End: 626 ...................................................................................................................................................................................................................................................ctacactttcacactgcaaaagcgtaggttttgcaaggtaaaagcggctgttttgcatcacaaaagaggcacttttgcaaaacgagaatctatttctcaactttcaaacagagttttaactgtttcacgtttctattttagctcattcccaaatgttaacagactcaattttattatactttattcacaatcagaaaatagactcatactgaactttctcccaataattattcagctatcttcccacaaaataaaactttcagcatcattattccatcgctacaactaaaattcgtatctttgcaatatcctatttcaagggtcaagacaatattactgctgataataatcttagaaaaatatctttataaaaccataaactt ...................................................................................................................................................................................................................................................ctacactttcacactgcaaaagcgtaggttttgcaaggtaaaagcggctgttttgcatcacaaaagaggcacttttgcaaaacgagaatctatttctcaactttcaaacagagttttaactgtttcacgtttctattttagctcattcccaaatgttaacagactcaattttattatactttattcacaatcagaaaatagactcatactgaactttctcccaataattattcagctatcttcccacaaaataaaactttcagcatcattattccatcgctacaactaaaattcgtatctttgcaatatcctatttcaagggtcaagacaatattactgctgataataatcttagaaaaatatctttataaaaccataaactt HSP 2 e-value: 1.0E-106 bit: 387.0 Len: 195 Query Start:1 Query End:195 Subject Strand: POSITIVE Subject Start: 1 Subject End: 195 taaacgtaaaaacacggtcgctaactgttaaattctaaagcgtgaaacttcgcaggaagggcactttttcaaacaaatatcttctcgctctcaaataatgccactttttacgtgcaacggaaaaggcacagacaggcagctactaacaaacgaagtgggtagtaatgtgcaatcattactctattttatggtaac............................................................................................................................................................................................................................................................................................................................................................................................................................................... taaacgtaaaaacacggtcgctaactgttaaattctaaagcgtgaaacttcgcaggaagggcactttttcaaacaaatatcttctcgctctcaaataatgccactttttacgtgcaacggaaaaggcacagacaggcagctactaacaaacgaagtgggtagtaatgtgcaatcattactctattttatggtaac............................................................................................................................................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAACGUAAAAACACGGUCGCUAACUGUUAAAUUCUAAAGCGUGAAACUUCGCAGGAAGGGCACUUUUUCAAACAAAUAUCUUCUCGCUCUCAAAUAAUGCCACUUUUUACGUGCAACGGAAAAGGCACAGACAGGCAGCUACUAACAAACGAAGUGGGUAGUAAUGUGCAAUCAUUACUCUAUUUUAUGGUAACAAAACAAAUAAGAAAGACGUAAAAAAGAAUAAUAUAAAGCUGCAAAAACUACACUUUCACACUGCAAAAGCGUAGGUUUUGCAAGGUAAAAGCGGCUGUUUUGCAUCACAAAAGAGGCACUUUUGCAAAACGAGAAUCUAUUUCUCAACUUUCAAACAGAGUUUUAACUGUUUCACGUUUCUAUUUUAGCUCAUUCCCAAAUGUUAACAGACUCAAUUUUAUUAUACUUUAUUCACAAUCAGAAAAUAGACUCAUACUGAACUUUCUCCCAAUAAUUAUUCAGCUAUCUUCCCACAAAAUAAAACUUUCAGCAUCAUUAUUCCAUCGCUACAACUAAAAUUCGUAUCUUUGCAAUAUCCUAUUUCAAGGGUCAAGACAAUAUUACUGCUGAUAAUAAUCUUAGAAAAAUAUCUUUAUAAAACCAUAAACUU ...............(((.(((..(((((..........((((........((..(((((...................)))))..)).........))))..........((((..........)))).)))))..)))..((((........(((((.(((((((......)))))))(((((((.((((..............(((((........................(((((((.((((.((((.........)))).)))).)))))))..(((((((.(.((.(((((.....))))).)).).))))))).....(((((.....)))))..))))).....((((.....(((((..((((((..................)))))).))))))))).......................)))).))))))).......(((((.................))))).......)))))............((((((....((((...((................(((....)))...(((((......)))))...)).))))....))))))........)))).................)))........ (-109.94) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAGUUUAUGGUUUUAUAAAGAUAUUUUUCUAAGAUUAUUAUCAGCAGUAAUAUUGUCUUGACCCUUGAAAUAGGAUAUUGCAAAGAUACGAAUUUUAGUUGUAGCGAUGGAAUAAUGAUGCUGAAAGUUUUAUUUUGUGGGAAGAUAGCUGAAUAAUUAUUGGGAGAAAGUUCAGUAUGAGUCUAUUUUCUGAUUGUGAAUAAAGUAUAAUAAAAUUGAGUCUGUUAACAUUUGGGAAUGAGCUAAAAUAGAAACGUGAAACAGUUAAAACUCUGUUUGAAAGUUGAGAAAUAGAUUCUCGUUUUGCAAAAGUGCCUCUUUUGUGAUGCAAAACAGCCGCUUUUACCUUGCAAAACCUACGCUUUUGCAGUGUGAAAGUGUAGUUUUUGCAGCUUUAUAUUAUUCUUUUUUACGUCUUUCUUAUUUGUUUUGUUACCAUAAAAUAGAGUAAUGAUUGCACAUUACUACCCACUUCGUUUGUUAGUAGCUGCCUGUCUGUGCCUUUUCCGUUGCACGUAAAAAGUGGCAUUAUUUGAGAGCGAGAAGAUAUUUGUUUGAAAAAGUGCCCUUCCUGCGAAGUUUCACGCUUUAGAAUUUAACAGUUAGCGACCGUGUUUUUACGUUUA (((..(((((((...(((........(((((((.......((((((....((((((......(((......))).((((((.....(((((.......)))))))))))..)))))).))))))..((...((((((..(((((...(((((((((.(((((((.(((((.((((...((.....))..))))..(((((.((((.((((((.....(((((((((....(((((.......))))).....(((.(.((((((........)))))).)..)))....))))))))).........(((((((.((.(((((.....))))).)).)))))))...((((((((.(((((((((..(...)..))))))))).)))))))).....)))))).)))))))))..)))))...((((((((((....))))))))))((((((......))))))..)))..(((((((...(((((.((((....(((((..........)))))........)))))))))...)))))))..)))).)))))).....)))...)))))..))))))...))..)))))))........)))..)))))))..)))....... (-143.09) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 759 310 261 199 150 pint:PI1437|5end_hypothetical_protein_1356088..1356318_POSITIVE 759 310 261 72 23 pint:PI1436|5end_hypothetical_protein_1355961..1356191_POSITIVE 705 307 261 178 132 pint:PI0211|5end_hypothetical_protein_204067..204297_POSITIVE 656 308 262 70 24 pint:PI0926|5end_hypothetical_protein_856824..857054_POSITIVE 654 299 260 189 150 pint:PI0196|5end_hypothetical_protein_188435..188665_POSITIVE 642 308 261 70 23 pint:PI1702|5end_hypothetical_protein_1620587..1620817_POSITIVE 642 308 261 225 178 pint:PI0561|5end_hypothetical_protein_508952..509182_POSITIVE 631 299 260 47 8 pint:PI0659|5end_hypothetical_protein_603203..603433_POSITIVE 621 310 261 72 23 pint:PI0037|5end_hypothetical_protein_39354..39584_POSITIVE 588 299 260 123 84 pint:PI1371|5end_hypothetical_protein_1292359..1292589_POSITIVE 541 300 255 62 17 pint:PI0638|5end_hypothetical_protein_582218..582448_POSITIVE 511 310 261 205 156 pint:PI2046|5end_hypothetical_protein_1999030..1999260_POSITIVE 510 297 260 205 169 pint:PI0653|5end_hypothetical_protein_596046..596276_POSITIVE 505 300 251 90 36 pint:PI0851|5end_hypothetical_protein_784310..784540_POSITIVE 498 300 258 71 24 pint:PI2128|5end_hypothetical_protein_2076512..2076742_POSITIVE 481 320 271 229 180 pint:PI0575|5end_hypothetical_protein_519561..519791_POSITIVE 470 300 258 80 33 pint:PI1204|5end_hypothetical_protein_1124430..1124660_POSITIVE 470 300 258 231 184 pint:PI0887|5end_hypothetical_protein_817536..817766_POSITIVE 470 300 258 124 77 pint:PI0867|5end_hypothetical_protein_803859..804089_POSITIVE 470 300 258 124 77 pint:PI0119|5end_hypothetical_protein_111506..111736_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 642 308 261 103 56 pint:PI0560|3end_hypothetical_protein_508910..509060_POSITIVE 599 300 260 117 77 pint:PI0905|3end_hypothetical_protein_834697..834847_POSITIVE 550 308 261 125 78 pint:PI1521|3end_hypothetical_protein_1441461..1441611_POSITIVE 465 300 258 90 43 pint:PI0567|3end_hypothetical_protein_513055..513205_POSITIVE 465 300 258 145 98 pint:PI0551|3end_hypothetical_protein_502683..502833_POSITIVE 459 310 261 105 56 pint:PI0819|3end_hypothetical_protein_759919..760069_POSITIVE 457 307 261 151 105 pint:PI0815|3end_hypothetical_protein_754677..754827_POSITIVE 447 290 260 151 121 pint:PI0659|3end_hypothetical_protein_603396..603546_POSITIVE 446 300 252 134 83 pint:PI0885|3end_hypothetical_protein_817563..817713_POSITIVE 429 300 252 134 83 pint:PI0118|3end_hypothetical_protein_111640..111790_POSITIVE 428 308 261 147 100 pint:PI0637|3end_hypothetical_protein_582397..582547_POSITIVE 426 326 284 143 96 pint:PI0182|3end_hypothetical_protein_174277..174427_POSITIVE 423 297 258 150 112 pint:PI0755|3end_hypothetical_protein_686884..687034_POSITIVE 423 300 260 144 104 pint:PI0568|3end_hypothetical_protein_513131..513281_POSITIVE 419 307 261 151 105 pint:PI0638|3end_hypothetical_protein_582402..582552_POSITIVE 418 299 258 147 106 pint:PI1666|3end_conserved_hypothetical_protein_1579418..1579568_POSITIVE 418 307 261 151 105 pint:PI0081|3end_hypothetical_protein_80700..80850_POSITIVE 412 300 252 134 83 pint:PI1005|3end_hypothetical_protein_926481..926631_POSITIVE 409 320 271 142 93 pint:PI0095|3end_hypothetical_protein_91850..92000_POSITIVE 408 300 252 134 83 pint:PI0089|3end_hypothetical_protein_88355..88505_POSITIVE