Origin IGS: taaatattttttataagaatatcttttatctaaccaactcgttttcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaacgaaagagatttttcagtatttgccttatgcaacaaaaagagaatcactcttccaccacgtggtatctaccgaactgttacattccttgaaaactacta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tagtagttttcaaggaatgtaacagttcggtagataccacgtggtggaagagtgattctctttttgttgcataaggcaaatactgaaaaatctctttcgttttgtaaagataattccgacgaaaaacggtaatttcgatttggcgttgcgaaagcggctgttttgcagcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaaagcgttgaaaacgagttggttagataaaagatattcttataaaaaatattta Mask Tandem Repeat Region ================================================ taaatattttttataagaatatcttttatctaaccaactcgttttcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaacgaaagagatttttcagtatttgccttatgcaacaaaaagagaatcactcttccaccacgtggtatctaccgaactgttacattccttgaaaactacta Find is-nt database================================================ Query_seq: PI1391:PI1392|PI1391:PI1392:hypothetical protein:hypothetical protein:->->:1311755..1312040 286 taaatattttttataagaatatcttttatctaaccaactcgttttcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaacgaaagagatttttcagtatttgccttatgcaacaaaaagagaatcactcttccaccacgtggtatctaccgaactgttacattccttgaaaactacta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1391:PI1392|PI1391:PI1392:hypothetical protein:hypothetical protein:->->:1311755..1312040 286 taaatattttttataagaatatcttttatctaaccaactcgttttcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaacgaaagagatttttcagtatttgccttatgcaacaaaaagagaatcactcttccaccacgtggtatctaccgaactgttacattccttgaaaactacta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1391:PI1392|PI1391:PI1392:hypothetical protein:hypothetical protein:->->:1311755..1312040 286 taaatattttttataagaatatcttttatctaaccaactcgttttcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaacgaaagagatttttcagtatttgccttatgcaacaaaaagagaatcactcttccaccacgtggtatctaccgaactgttacattccttgaaaactacta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taaatattttttataagaatatcttttatctaaccaactcgttttcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaacgaaagagatttttcagtatttgccttatgcaacaaaaagagaatcactcttccaccacgtggtatctaccgaactgttacattccttgaaaactacta Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 92 End: 274 ........................................................................................... M H G K S G C F A L Q N S R F R N A K S K L P F F V G I I F T K R K R F F S I C L M Q Q K E N H S S T T W Y L P N C Y I ............ Protein_Len: 60 Strand: + Start: 6 End: 284 ..... M F Y K N I F Y L T N S F S T L Y K T Y C F A F Q K R R F C T V K A A V L R C K T A A F A T P N R N Y R F S S E L S L Q .. Protein_Len: 59 Strand: + Start: 109 End: 285 ............................................................................................................ M F C A A K Q P L S Q R Q I E I T V F R R N Y L Y K T K E I F Q Y L P Y A T K R E S L F H H V V S T E L L H S L K T T . Protein_Len: 32 Strand: - Start: 158 End: 253 ............................................................................................................................................................. R K E D S N D K C F S L S K E T N A K H L L F L I V R G G R P M ................................. Protein_Len: 36 Strand: - Start: 48 End: 155 ............................................... R K V F G I T K C E L L T P K A R Y F R S N Q A A F C G S E C R W I S M ................................................................................................................................... Protein_Len: 60 Strand: - Start: 1 End: 216 S T K L A K C F R N N Q M G F A Y T K C P L L P Q K A S C F L R K R L A L D F N G N K T P I I K V F R F L N K L I Q R M ...................................................................... taaatattttttataagaatatcttttatctaaccaactcgttttcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaacgaaagagatttttcagtatttgccttatgcaacaaaaagagaatcactcttccaccacgtggtatctaccgaactgttacattccttgaaaactacta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taaatattttttataagaatatcttttatctaaccaactcgttttcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaacgaaagagatttttcagtatttgccttatgcaacaaaaagagaatcactcttccaccacgtggtatctaccgaactgttacattccttgaaaactacta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -21.9 Tail_Score: -3.53012 Start: 105 End: 133 Full_Region: TTTTGCACGGTAAAA GCGGCTGTTTTGC GCT GCAAAACAGCCGC TTTCGCAACGCCAAA ........................................................................................................GCGGCTGTTTTGCGCTGCAAAACAGCCGC......................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -21.9 Tail_Score: -4.13767 Start: 105 End: 133 Full_Region: tttggcgttgcgaaa gcggctgttttgc agc gcaaaacagccgc ttttaccgtgcaaaa ........................................................................................................gcggctgttttgcagcgcaaaacagccgc......................................................................................................................................................... Find igs database================================================ Query_seq: PI1391:PI1392|PI1391:PI1392:hypothetical protein:hypothetical protein:->->:1311755..1312040 286 taaatattttttataagaatatcttttatctaaccaactcgttttcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaacgaaagagatttttcagtatttgccttatgcaacaaaaagagaatcactcttccaccacgtggtatctaccgaactgttacattccttgaaaactacta Intra-Species Hit: Count: 44 Min: 1 Max: 286 Len: 286 Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 1.0E-161 bit: 567.0 Len: 286 Query Start:1 Query End:286 Subject Strand: POSITIVE Subject Start: 1 Subject End: 286 taaatattttttataagaatatcttttatctaaccaactcgttttcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaacgaaagagatttttcagtatttgccttatgcaacaaaaagagaatcactcttccaccacgtggtatctaccgaactgttacattccttgaaaactacta taaatattttttataagaatatcttttatctaaccaactcgttttcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaacgaaagagatttttcagtatttgccttatgcaacaaaaagagaatcactcttccaccacgtggtatctaccgaactgttacattccttgaaaactacta Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 1.0E-48 bit: 194.0 Len: 158 Query Start:31 Query End:188 Subject Strand: POSITIVE Subject Start: 81 Subject End: 238 ..............................taaccaactcgttttcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaac.................................................................................................. ..............................taactaactcgttatcaacacattgcaaaacctattgttttgcattccaaaagcgtaggttttacacggcaaaagcggctgttttgcgttgcaaaacagccgctttcgcaatgccaaatcgaaattatcatttttcttacgaataatctttacaaaac.................................................................................................. Subject: pint_PI0195_PI0196|epimerase/reductase:hypothetical protein|POSITIVE:POSITIVE|[188263,188574]|312 HSP 1 e-value: 2.0E-47 bit: 190.0 Len: 104 Query Start:53 Query End:156 Subject Strand: NEGATIVE Subject Start: 176 Subject End: 279 ....................................................ttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaatt.................................................................................................................................. ....................................................ttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgatgcaaaacagccgctttcgcaatgccaaatcgaaatt.................................................................................................................................. Subject: pint_PI1441_PI1442|hypothetical protein:radical-activating enzyme (pyruvate-formate lyase-activating enzyme)|POSITIVE:POSITIVE|[1363734,1364088]|355 HSP 1 e-value: 3.0E-46 bit: 186.0 Len: 158 Query Start:31 Query End:188 Subject Strand: POSITIVE Subject Start: 60 Subject End: 217 ..............................taaccaactcgttttcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaac.................................................................................................. ..............................taacaaactcgttatcaacgctttacaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctcttttgcattgcaaaacctacgctttcgcaacgtcaaatcgaaaataccgttttccttgtaaattatctttacaaaac.................................................................................................. Subject: pint_PI0854_PI0855|MiaB-like tRNA modifying enzyme:hypothetical protein|POSITIVE:POSITIVE|[788060,789233]|1174 HSP 1 e-value: 4.0E-42 bit: 172.0 Len: 131 Query Start:57 Query End:187 Subject Strand: NEGATIVE Subject Start: 741 Subject End: 871 ........................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaa................................................................................................... ........................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgttgcaaaacctacgctttcgcaacgccaaatcgaaattatcatttttcttgcgaactttctttacaaaa................................................................................................... Subject: pint_PI1981_PI1982|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1938199,1938578]|380 HSP 1 e-value: 3.0E-40 bit: 167.0 Len: 132 Query Start:57 Query End:188 Subject Strand: NEGATIVE Subject Start: 143 Subject End: 274 ........................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaac.................................................................................................. ........................................................aaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctgttttgaaatgcaaaacagccgctttcgcaatgtcaaaccgaaattgctgttttttatcagaattatctttacaaaac.................................................................................................. Subject: pint_PI0694_PI0695|Na+/dicarboxylate or sulfate symporter:xanthine/uracil permease family protein|POSITIVE:POSITIVE|[631238,631552]|315 HSP 1 e-value: 3.0E-40 bit: 167.0 Len: 144 Query Start:45 Query End:188 Subject Strand: NEGATIVE Subject Start: 87 Subject End: 230 ............................................tcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaac.................................................................................................. ............................................tcaacactttgcaaaacctattgttttgcattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcagtgtcaaatcgaaattaccgttttccgtcggaattatctttacaaaac.................................................................................................. Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 3.0E-40 bit: 167.0 Len: 144 Query Start:45 Query End:188 Subject Strand: NEGATIVE Subject Start: 9 Subject End: 152 ............................................tcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaac.................................................................................................. ............................................tcaacgcattacaaaacctattgttttgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccactttcgcaacgtcaaatcgaaattatcatttttcttcggaattatctttacaaaac.................................................................................................. Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 3.0E-40 bit: 167.0 Len: 132 Query Start:57 Query End:188 Subject Strand: NEGATIVE Subject Start: 214 Subject End: 345 ........................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaac.................................................................................................. ........................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgccaaatcgaaattatcgtttttcagcgaaattatctttacaaaac.................................................................................................. Subject: pint_PI1958_PI1959|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1917430,1917847]|418 HSP 1 e-value: 1.0E-39 bit: 165.0 Len: 131 Query Start:57 Query End:187 Subject Strand: NEGATIVE Subject Start: 182 Subject End: 312 ........................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaa................................................................................................... ........................................................aaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctgttttgcaatgcaaaacagccgcttttgcaatgtcaaaccgaaattgctgttttttatcagaattatctttacaaaa................................................................................................... HSP 2 e-value: 7.0E-7 bit: 56.0 Len: 36 Query Start:101 Query End:136 Subject Strand: POSITIVE Subject Start: 232 Subject End: 267 ....................................................................................................aaaagcggctgttttgcgctgcaaaacagccgcttt...................................................................................................................................................... ....................................................................................................aaaagcggctgttttgcattgcaaaacagccgcttt...................................................................................................................................................... Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 1.0E-39 bit: 165.0 Len: 139 Query Start:56 Query End:194 Subject Strand: NEGATIVE Subject Start: 134 Subject End: 272 .......................................................caaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaacgaaaga............................................................................................ .......................................................caaaacctattgttttgcattgtaaaagcgtaggttttacacggtcaaagcggctgttttgcgatgcaaaacagccgctttcgcaatgccaaatcgaaattatcattttccttacgaattatccttacaaaaccaaaga............................................................................................ Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 1.0E-39 bit: 165.0 Len: 135 Query Start:53 Query End:187 Subject Strand: NEGATIVE Subject Start: 79 Subject End: 213 ....................................................ttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaa................................................................................................... ....................................................ttacaaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcatcgcaaaacagccgctttcgcaatgccaaagcgcaattaccacttttcaacgaaattatctttacaaaa................................................................................................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 35 Query Start:102 Query End:136 Subject Strand: POSITIVE Subject Start: 130 Subject End: 164 .....................................................................................................aaagcggctgttttgcgctgcaaaacagccgcttt...................................................................................................................................................... .....................................................................................................aaagcggctgttttgcgatgcaaaagagccgcttt...................................................................................................................................................... Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 4.0E-39 bit: 163.0 Len: 142 Query Start:45 Query End:186 Subject Strand: POSITIVE Subject Start: 375 Subject End: 516 ............................................tcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaa.................................................................................................... ............................................tcaacgcattacaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaacagccgctttcgcaatgccaaatcgaaattatcatttttcatcagaattatctttacaaa.................................................................................................... Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 4.0E-39 bit: 163.0 Len: 178 Query Start:57 Query End:234 Subject Strand: POSITIVE Subject Start: 233 Subject End: 409 ........................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaacgaaagagatttttcagtatttgccttatgcaacaaaaagagaatca.................................................... ........................................................aaaacctattgttttgcattccaaaagtgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaatgccaaatcgaaattatcgtttttc-aatgaattatctttacaaaaccaaagtaattttggggtatttaccttgagcaagaaaaagaaaatca.................................................... Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 6.0E-38 bit: 159.0 Len: 156 Query Start:45 Query End:200 Subject Strand: POSITIVE Subject Start: 29 Subject End: 184 ............................................tcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaacgaaagagatttt...................................................................................... ............................................tcaatgctttacaaaacctattgttttgcattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgtaaaagagccgctttcgcaacgtcaaaacgaaattattgtttttcatcagaattatctttacaaaaccaaagatatttt...................................................................................... Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 3.0E-37 bit: 157.0 Len: 103 Query Start:46 Query End:148 Subject Strand: NEGATIVE Subject Start: 240 Subject End: 341 .............................................caacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaa.......................................................................................................................................... .............................................caacgcattacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgc-aaacagccgctttcgcaacgccaaa.......................................................................................................................................... Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 6.0E-35 bit: 149.0 Len: 131 Query Start:57 Query End:187 Subject Strand: POSITIVE Subject Start: 174 Subject End: 304 ........................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaa................................................................................................... ........................................................aaaacctattgttttgcattgtaaaagcgtaggttttgcacggtaaaagcggctcttttgcatcgcaaaacatacgctttcgcaacgtcaaatcgaaattatcattttccctccgaattatctttacaaaa................................................................................................... Subject: pint_PI1803_PI1804|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1737852,1738248]|397 HSP 1 e-value: 1.0E-33 bit: 145.0 Len: 133 Query Start:57 Query End:189 Subject Strand: NEGATIVE Subject Start: 264 Subject End: 396 ........................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaacg................................................................................................. ........................................................aaaacctattgttttgcattgtaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaatgccaaatcgaaattaccgttttctttcggaataatctttacaaaacg................................................................................................. Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 4.0E-33 bit: 143.0 Len: 144 Query Start:45 Query End:188 Subject Strand: NEGATIVE Subject Start: 112 Subject End: 255 ............................................tcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaac.................................................................................................. ............................................tcaacgcattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaatcgaaattaccatttttcaaagaaattatctttacaaaac.................................................................................................. Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 6.0E-32 bit: 139.0 Len: 138 Query Start:51 Query End:188 Subject Strand: NEGATIVE Subject Start: 143 Subject End: 280 ..................................................ctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaac.................................................................................................. ..................................................ctttgcaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgtcaaatcgaaattatcattttttcaacgaattatctttacaaaac.................................................................................................. Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 9.0E-31 bit: 135.0 Len: 108 Query Start:57 Query End:164 Subject Strand: NEGATIVE Subject Start: 178 Subject End: 285 ........................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttt.......................................................................................................................... ........................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagcagctttcgcaacgtcaaatcgaaattatcgtttt.......................................................................................................................... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 9.0E-31 bit: 135.0 Len: 104 Query Start:45 Query End:148 Subject Strand: POSITIVE Subject Start: 167 Subject End: 270 ............................................tcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaa.......................................................................................................................................... ............................................tcaacgctttgtaaaacctattgttttgcgttccaaaagcgtaggttttgcacggtaaaagcggctgttttgcattgcaaaacctacgctttcgcaacgtcaaa.......................................................................................................................................... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 5.0E-26 bit: 119.0 Len: 148 Query Start:53 Query End:200 Subject Strand: POSITIVE Subject Start: 328 Subject End: 475 ....................................................ttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaacgaaagagatttt...................................................................................... ....................................................ttacaaaacctattgttttgcatcctaaaagcggctgttttgcacggtaaaagcataggttttgcgttgcaaaagagctgctttcgcaacgtcaaatcgaaattatcgttttcttaacgaattatctttacaaaaccaaagcgatttt...................................................................................... Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 5.0E-26 bit: 119.0 Len: 104 Query Start:45 Query End:148 Subject Strand: NEGATIVE Subject Start: 140 Subject End: 243 ............................................tcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaa.......................................................................................................................................... ............................................tcaacgcattgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaa.......................................................................................................................................... Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 5.0E-26 bit: 119.0 Len: 132 Query Start:57 Query End:188 Subject Strand: POSITIVE Subject Start: 111 Subject End: 242 ........................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaac.................................................................................................. ........................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaaaac.................................................................................................. Subject: pint_PI0652_PI0653|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[595853,596185]|333 HSP 1 e-value: 5.0E-26 bit: 119.0 Len: 136 Query Start:53 Query End:188 Subject Strand: NEGATIVE Subject Start: 146 Subject End: 281 ....................................................ttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaac.................................................................................................. ....................................................ttacaaaacctattgttttgcattccaaaagcgtaggttttgcaaggcaaaagagccgcttttggacggtaaaacctacactttcgcagtgccaaatcgaaattatcgtttttcttcagaattatctttacaaaac.................................................................................................. Subject: pint_PI1915_PI1916|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1859967,1860350]|384 HSP 1 e-value: 2.0E-25 bit: 117.0 Len: 131 Query Start:57 Query End:187 Subject Strand: NEGATIVE Subject Start: 114 Subject End: 244 ........................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaa................................................................................................... ........................................................aaaacctattgttttgcattccaaaagcggctgttttgcaacgtaaaacatacgcttttaccgtgcaaaacagccgctttcgcaatgccaaatcgaaattatcgtttttcgtcagaattatttttacaaaa................................................................................................... HSP 2 e-value: 3.0E-9 bit: 63.9 Len: 48 Query Start:89 Query End:136 Subject Strand: POSITIVE Subject Start: 174 Subject End: 221 ........................................................................................gttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgcttt...................................................................................................................................................... ........................................................................................gttttgcacggtaaaagcgtatgttttacgttgcaaaacagccgcttt...................................................................................................................................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 2.0E-25 bit: 117.0 Len: 115 Query Start:43 Query End:157 Subject Strand: NEGATIVE Subject Start: 121 Subject End: 235 ..........................................tttcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaatta................................................................................................................................. ..........................................tttcaacgtattgcaaaacctattgttttgcactccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgttttcgcaatgtcaaatcgaaatta................................................................................................................................. Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 9.0E-25 bit: 115.0 Len: 162 Query Start:53 Query End:214 Subject Strand: NEGATIVE Subject Start: 119 Subject End: 280 ....................................................ttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaacgaaagagatttttcagtatttgcctt........................................................................ ....................................................ttacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcattttttaagagaattatctttacaaaacgaatggtattttttagtatttgcctt........................................................................ Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 3.0E-24 bit: 113.0 Len: 101 Query Start:57 Query End:157 Subject Strand: NEGATIVE Subject Start: 99 Subject End: 199 ........................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaatta................................................................................................................................. ........................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaacgtcaaatcgaaatta................................................................................................................................. Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 3.0E-24 bit: 113.0 Len: 109 Query Start:56 Query End:164 Subject Strand: POSITIVE Subject Start: 87 Subject End: 195 .......................................................caaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttt.......................................................................................................................... .......................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaatcgaaattaccatttt.......................................................................................................................... Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 1.0E-23 bit: 111.0 Len: 136 Query Start:53 Query End:188 Subject Strand: POSITIVE Subject Start: 407 Subject End: 542 ....................................................ttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaac.................................................................................................. ....................................................ttacaaaacctattgttttgcattccaaaagcggctgttttgcacggcaaaagcgtaggttttacctcgcaaaacagccgctttcgcaacgtcaaaacgaaattatcaattttcaatgtaattatctttacaaaac.................................................................................................. Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 1.0E-23 bit: 111.0 Len: 136 Query Start:65 Query End:200 Subject Strand: POSITIVE Subject Start: 199 Subject End: 334 ................................................................ttgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaacgaaagagatttt...................................................................................... ................................................................ttgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcaacgcaaaacctacgctttcgcaatgccaaagcgcagttatccttttttaagggaattatctttacaaaacaaaagggatttt...................................................................................... Subject: pint_PI2056_PI2057|conserved hypothetical protein:conserved hypothetical protein; possible metal-dependent membrane protease|POSITIVE:POSITIVE|[2014489,2015078]|590 HSP 1 e-value: 8.0E-22 bit: 105.0 Len: 105 Query Start:53 Query End:157 Subject Strand: NEGATIVE Subject Start: 371 Subject End: 475 ....................................................ttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaatta................................................................................................................................. ....................................................ttacaaaacctattgtttcgcattccaaaagcggctgttttgcatggtaaaagcgtaagttttgcattacaaaagagccgctttcgcaacgtcaaatcgaaatta................................................................................................................................. Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 8.0E-22 bit: 105.0 Len: 133 Query Start:53 Query End:185 Subject Strand: NEGATIVE Subject Start: 170 Subject End: 302 ....................................................ttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaa..................................................................................................... ....................................................ttacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaatgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacggaattatctttacaa..................................................................................................... Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 3.0E-21 bit: 103.0 Len: 104 Query Start:45 Query End:148 Subject Strand: NEGATIVE Subject Start: 150 Subject End: 253 ............................................tcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaa.......................................................................................................................................... ............................................tcaacgcattataaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaa.......................................................................................................................................... Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 3.0E-21 bit: 103.0 Len: 104 Query Start:45 Query End:148 Subject Strand: POSITIVE Subject Start: 140 Subject End: 243 ............................................tcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaa.......................................................................................................................................... ............................................tcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaa.......................................................................................................................................... Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 3.0E-21 bit: 103.0 Len: 104 Query Start:45 Query End:148 Subject Strand: NEGATIVE Subject Start: 348 Subject End: 451 ............................................tcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaa.......................................................................................................................................... ............................................tcaacgcattacaagacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaa.......................................................................................................................................... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 3.0E-21 bit: 103.0 Len: 104 Query Start:45 Query End:148 Subject Strand: NEGATIVE Subject Start: 518 Subject End: 621 ............................................tcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaa.......................................................................................................................................... ............................................tcaacgcattacaaaacctattgttttgcattccaaaagcggctgttttgcatggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgccaaa.......................................................................................................................................... Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 3.0E-21 bit: 103.0 Len: 136 Query Start:53 Query End:188 Subject Strand: NEGATIVE Subject Start: 49 Subject End: 184 ....................................................ttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaaac.................................................................................................. ....................................................ttacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaacggaattatctttacaaaac.................................................................................................. Subject: pint_PI1728_PI1729|ATP-dependent Clp protease, proteolytic subunit:FKBP-type peptidyl-prolyl cis-trans isomerase, trigger factor|POSITIVE:POSITIVE|[1647719,1648555]|837 HSP 1 e-value: 2.0E-19 bit: 97.6 Len: 132 Query Start:57 Query End:188 Subject Strand: POSITIVE Subject Start: 416 Subject End: 547 ........................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttt-tcgtcggaattatctttacaaaac.................................................................................................. ........................................................aaaacctattgtttcgcattgtaaaagagccgcttttgcacggtaaaagcggctcttttgccttgcaaaacctacgcttttgcaacgtcaaatcgaaattaccgttttctcaac-gaattatctttacaaaac.................................................................................................. Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 8.0E-19 bit: 95.6 Len: 104 Query Start:45 Query End:148 Subject Strand: NEGATIVE Subject Start: 224 Subject End: 327 ............................................tcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaa.......................................................................................................................................... ............................................tcaacgccttacaaaacctattgtttcgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcacaaaagagccgctttcgcaacgccaaa.......................................................................................................................................... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 1.0E-17 bit: 91.7 Len: 110 Query Start:39 Query End:148 Subject Strand: POSITIVE Subject Start: 79 Subject End: 188 ......................................tcgttttcaacgctttacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaa.......................................................................................................................................... ......................................tcgttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaa.......................................................................................................................................... Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 7.0E-13 bit: 75.8 Len: 130 Query Start:57 Query End:186 Subject Strand: NEGATIVE Subject Start: 200 Subject End: 329 ........................................................aaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcgctgcaaaacagccgctttcgcaacgccaaatcgaaattaccgtttttcgtcggaattatctttacaaa.................................................................................................... ........................................................aaaacctattgttttgcgttccaaaaacggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcactttttaacggaattatctttacaaa.................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAUAUUUUUUAUAAGAAUAUCUUUUAUCUAACCAACUCGUUUUCAACGCUUUACAAAACCUAUUGUUUUGCAUUCCAAAAGCGUAGGUUUUGCACGGUAAAAGCGGCUGUUUUGCGCUGCAAAACAGCCGCUUUCGCAACGCCAAAUCGAAAUUACCGUUUUUCGUCGGAAUUAUCUUUACAAAACGAAAGAGAUUUUUCAGUAUUUGCCUUAUGCAACAAAAAGAGAAUCACUCUUCCACCACGUGGUAUCUACCGAACUGUUACAUUCCUUGAAAACUACUA ...(((((((.....)))))))..................((((((((.......((((((((((.(((((........)))))))))))))))..(((((((((((((((((((((...))))))))))))))))......((((...(((((........)))))..((((..............(....).(((((((......((((.....))))......)))))))....))))......))))...)))))..............))))))))..... (-72.50) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGUAGUUUUCAAGGAAUGUAACAGUUCGGUAGAUACCACGUGGUGGAAGAGUGAUUCUCUUUUUGUUGCAUAAGGCAAAUACUGAAAAAUCUCUUUCGUUUUGUAAAGAUAAUUCCGACGAAAAACGGUAAUUUCGAUUUGGCGUUGCGAAAGCGGCUGUUUUGCAGCGCAAAACAGCCGCUUUUACCGUGCAAAACCUACGCUUUUGGAAUGCAAAACAAUAGGUUUUGUAAAGCGUUGAAAACGAGUUGGUUAGAUAAAAGAUAUUCUUAUAAAAAAUAUUUA ............((((((((.....(((((((....((..(..(..((((((.....))).)))..)..)....))....)))))))..((((...(((.(((((...((.(((((((........))).))))))..((..(((((..(((((((((((((((((...)))))))))))))))))....(((((((((((...(((((.....)))))...))))))))))).)))))..)).))))).)))..)))).....)))))))).............. (-82.00) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 933 140 91 212 163 pint:PI0196|5end_hypothetical_protein_188435..188665_POSITIVE 913 110 61 209 160 pint:PI0561|5end_hypothetical_protein_508952..509182_POSITIVE 913 110 61 163 114 pint:PI0211|5end_hypothetical_protein_204067..204297_POSITIVE 913 110 61 54 5 pint:PI0037|5end_hypothetical_protein_39354..39584_POSITIVE 910 140 91 70 21 pint:PI0659|5end_hypothetical_protein_603203..603433_POSITIVE 890 119 71 193 142 pint:PI1437|5end_hypothetical_protein_1356088..1356318_POSITIVE 890 119 71 66 15 pint:PI1436|5end_hypothetical_protein_1355961..1356191_POSITIVE 858 110 61 116 67 pint:PI1371|5end_hypothetical_protein_1292359..1292589_POSITIVE 857 110 61 54 5 pint:PI1702|5end_hypothetical_protein_1620587..1620817_POSITIVE 812 160 111 144 95 pint:PI0119|5end_hypothetical_protein_111506..111736_POSITIVE 797 140 91 217 168 pint:PI0024|5end_hypothetical_protein_28378..28608_POSITIVE 770 140 91 231 182 pint:PI0887|5end_hypothetical_protein_817536..817766_POSITIVE 770 140 91 124 75 pint:PI0867|5end_hypothetical_protein_803859..804089_POSITIVE 770 140 91 65 16 pint:PI0089|5end_hypothetical_protein_88162..88392_POSITIVE 760 160 111 82 33 pint:PI0638|5end_hypothetical_protein_582218..582448_POSITIVE 746 160 111 196 147 pint:PI1804|5end_hypothetical_protein_1738109..1738339_POSITIVE 744 140 91 84 35 pint:PI0322|5end_hypothetical_protein_303508..303738_POSITIVE 739 140 91 80 31 pint:PI1204|5end_hypothetical_protein_1124430..1124660_POSITIVE 725 140 91 84 35 pint:PI2022|5end_hypothetical_protein_1978631..1978861_POSITIVE 725 140 91 63 14 pint:PI1786|5end_hypothetical_protein_1718124..1718354_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 913 110 61 109 60 pint:PI0905|3end_hypothetical_protein_834697..834847_POSITIVE 913 110 61 87 38 pint:PI0560|3end_hypothetical_protein_508910..509060_POSITIVE 781 108 61 151 104 pint:PI0659|3end_hypothetical_protein_603396..603546_POSITIVE 780 110 61 109 60 pint:PI1521|3end_hypothetical_protein_1441461..1441611_POSITIVE 740 150 101 58 9 pint:PI1520|3end_hypothetical_protein_1441370..1441520_POSITIVE 724 100 51 126 77 pint:PI0815|3end_hypothetical_protein_754677..754827_POSITIVE 715 107 61 145 99 pint:PI1797|3end_hypothetical_protein_1731559..1731709_POSITIVE 715 107 61 145 99 pint:PI0885|3end_hypothetical_protein_817563..817713_POSITIVE 715 107 61 145 99 pint:PI0866|3end_hypothetical_protein_803993..804143_POSITIVE 715 107 61 145 99 pint:PI0820|3end_hypothetical_protein_759980..760130_POSITIVE 715 107 61 84 38 pint:PI0819|3end_hypothetical_protein_759919..760069_POSITIVE 715 107 61 133 87 pint:PI0095|3end_hypothetical_protein_91850..92000_POSITIVE 715 107 61 145 99 pint:PI0089|3end_hypothetical_protein_88355..88505_POSITIVE 691 108 61 137 87 pint:PI0081|3end_hypothetical_protein_80700..80850_POSITIVE 681 107 61 145 99 pint:PI0118|3end_hypothetical_protein_111640..111790_POSITIVE 667 140 91 90 41 pint:PI0567|3end_hypothetical_protein_513055..513205_POSITIVE 659 107 61 133 87 pint:PI0568|3end_hypothetical_protein_513131..513281_POSITIVE 655 107 61 145 99 pint:PI1041|3end_hypothetical_protein_960675..960825_POSITIVE 641 100 53 143 96 pint:PI1294|3end_hypothetical_protein_1208716..1208866_POSITIVE 639 107 61 145 99 pint:PI1005|3end_hypothetical_protein_926481..926631_POSITIVE