Origin IGS: taggataggtattttttagcaagttcccctatgaagcagtgcgaagtttttcgctttgctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttacacgtctatcatctttttttcggttataaaacaacgtgaattcggtgtaagaattggacgaaaagacttcacttctttctgatttaacaagcatatcaaatcatagaaaccctatacgcttgtagatta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taatctacaagcgtatagggtttctatgatttgatatgcttgttaaatcagaaagaagtgaagtcttttcgtccaattcttacaccgaattcacgttgttttataaccgaaaaaaagatgatagacgtgtaaatatttttcataagagtatctattgtttaactctttaattatcaatgtgttacaaaacctattgttttgcattctaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttgtcactttttaacagaattatctttacaaagcaaagcgaaaaacttcgcactgcttcataggggaacttgctaaaaaatacctatccta Mask Tandem Repeat Region ================================================ taggataggtattttttagcaagttcccctatgaagcagtgcgaagtttttcgctttgctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttacacgtctatcatctttttttcggttataaaacaacgtgaattcggtgtaagaattggacgaaaagacttcacttctttctgatttaacaagcatatcaaatcatagaaaccctatacgcttgtagatta Find is-nt database================================================ Query_seq: PI1379:PI1380|PI1379:PI1380:hypothetical protein:conserved hypothetical protein:->->:1302353..1302726 374 taggataggtattttttagcaagttcccctatgaagcagtgcgaagtttttcgctttgctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttacacgtctatcatctttttttcggttataaaacaacgtgaattcggtgtaagaattggacgaaaagacttcacttctttctgatttaacaagcatatcaaatcatagaaaccctatacgcttgtagatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1379:PI1380|PI1379:PI1380:hypothetical protein:conserved hypothetical protein:->->:1302353..1302726 374 taggataggtattttttagcaagttcccctatgaagcagtgcgaagtttttcgctttgctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttacacgtctatcatctttttttcggttataaaacaacgtgaattcggtgtaagaattggacgaaaagacttcacttctttctgatttaacaagcatatcaaatcatagaaaccctatacgcttgtagatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1379:PI1380|PI1379:PI1380:hypothetical protein:conserved hypothetical protein:->->:1302353..1302726 374 taggataggtattttttagcaagttcccctatgaagcagtgcgaagtttttcgctttgctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttacacgtctatcatctttttttcggttataaaacaacgtgaattcggtgtaagaattggacgaaaagacttcacttctttctgatttaacaagcatatcaaatcatagaaaccctatacgcttgtagatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taggataggtattttttagcaagttcccctatgaagcagtgcgaagtttttcgctttgctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttacacgtctatcatctttttttcggttataaaacaacgtgaattcggtgtaagaattggacgaaaagacttcacttctttctgatttaacaagcatatcaaatcatagaaaccctatacgcttgtagatta Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 39 End: 281 ...................................... M R S F S L C F V K I I L L K S D N C A L T L R K R L F C D A K P T L L P C K T A A F R M Q N N R F C N T L I I K E L N ............................................................................................. Protein_Len: 35 Strand: + Start: 220 End: 324 ........................................................................................................................................................................................................................... M D T L M K N I Y T S I I F F S V I K Q R E F G V R I G R K D F T S F .................................................. Protein_Len: 33 Strand: - Start: 246 End: 344 ..................................................................................................................................................................................................................................................... V D I M K K E T I F C R S N P T L I P R F S K V E K Q N L L C I M .............................. Protein_Len: 44 Strand: - Start: 208 End: 339 ............................................................................................................................................................................................................... L T L C Y I S K H F I N V R R D D K K R N Y F L T F E T Y S N S S F V E S R E S K V L M ................................... Protein_Len: 60 Strand: - Start: 32 End: 220 ............................... R L K E S Q K T F I I R N F L S L Q A K V N R F R S K Q S A F G V S K G H L V A A K L I C F L L N Q L V N I I L S N F M .......................................................................................................................................................... Protein_Len: 38 Strand: - Start: 19 End: 132 .................. C T G R H L L A F N K A K S Q L S L E T L F H C S R K S T A F A A R K R H M .................................................................................................................................................................................................................................................. taggataggtattttttagcaagttcccctatgaagcagtgcgaagtttttcgctttgctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttacacgtctatcatctttttttcggttataaaacaacgtgaattcggtgtaagaattggacgaaaagacttcacttctttctgatttaacaagcatatcaaatcatagaaaccctatacgcttgtagatta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taggataggtattttttagcaagttcccctatgaagcagtgcgaagtttttcgctttgctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttacacgtctatcatctttttttcggttataaaacaacgtgaattcggtgtaagaattggacgaaaagacttcacttctttctgatttaacaagcatatcaaatcatagaaaccctatacgcttgtagatta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 85 HP_score: -9.0 Tail_Score: -4.13767 Start: 113 End: 163 Full_Region: TTTGACGTTGCGAAA GCGGCTCTTTTGCGATGCAAAACC TAC GCTTTTACCGTGCAAAACAGCCGC TTTTAGAATGCAAAA ................................................................................................................GCGGCTCTTTTGCGATGCAAAACCTACGCTTTTACCGTGCAAAACAGCCGC................................................................................................................................................................................................................... TransTerm Strand: - Conf: 77 HP_score: -9.0 Tail_Score: -3.54424 Start: 113 End: 163 Full_Region: ttttgcattctaaaa gcggctgttttgcacggtaaaagc gta ggttttgcatcgcaaaagagccgc tttcgcaacgtcaaa ................................................................................................................gcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgc................................................................................................................................................................................................................... TransTerm Strand: - Conf: 45 HP_score: -2.6 Tail_Score: -3.28924 Start: 172 End: 192 Full_Region: taattatcaatgtgt tacaaaac ctatt gttttgca ttctaaaagcggctg ...........................................................................................................................................................................tacaaaacctattgttttgca...................................................................................................................................................................................... Find igs database================================================ Query_seq: PI1379:PI1380|PI1379:PI1380:hypothetical protein:conserved hypothetical protein:->->:1302353..1302726 374 taggataggtattttttagcaagttcccctatgaagcagtgcgaagtttttcgctttgctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttacacgtctatcatctttttttcggttataaaacaacgtgaattcggtgtaagaattggacgaaaagacttcacttctttctgatttaacaagcatatcaaatcatagaaaccctatacgcttgtagatta Intra-Species Hit: Count: 51 Min: 1 Max: 374 Len: 374 Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 0.0 bit: 700.0 Len: 374 Query Start:1 Query End:374 Subject Strand: POSITIVE Subject Start: 1 Subject End: 374 taggataggtattttttagcaagttcccctatgaagcagtgcgaagtttttcgctttgctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttacacgtctatcatcnnnnnnncggttataaaacaacgtgaattcggtgtaagaattggacgaaaagacttcacttctttctgatttaacaagcatatcaaatcatagaaaccctatacgcttgtagatta taggataggtattttttagcaagttcccctatgaagcagtgcgaagtttttcgctttgctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttacacgtctatcatctttttttcggttataaaacaacgtgaattcggtgtaagaattggacgaaaagacttcacttctttctgatttaacaagcatatcaaatcatagaaaccctatacgcttgtagatta Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 4.0E-61 bit: 236.0 Len: 167 Query Start:60 Query End:226 Subject Strand: NEGATIVE Subject Start: 58 Subject End: 224 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagata.................................................................................................................................................... ...........................................................tttgtaaagataattctgttaaaaactgataactgcgctttgacgttgcgaaagcggctcttttacgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgtaatacgttgatgattagatagttaagcaatagata.................................................................................................................................................... Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 2.0E-60 bit: 234.0 Len: 134 Query Start:60 Query End:193 Subject Strand: POSITIVE Subject Start: 51 Subject End: 184 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaa..................................................................................................................................................................................... ...........................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa..................................................................................................................................................................................... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 1.0E-58 bit: 228.0 Len: 135 Query Start:59 Query End:193 Subject Strand: POSITIVE Subject Start: 479 Subject End: 613 ..........................................................ctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaa..................................................................................................................................................................................... ..........................................................ctttgtaaagataattctgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaataggttttgtaa..................................................................................................................................................................................... Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 2.0E-57 bit: 224.0 Len: 137 Query Start:59 Query End:195 Subject Strand: POSITIVE Subject Start: 148 Subject End: 284 ..........................................................ctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaaca................................................................................................................................................................................... ..........................................................ctttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaaca................................................................................................................................................................................... Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 2.0E-57 bit: 224.0 Len: 189 Query Start:60 Query End:248 Subject Strand: NEGATIVE Subject Start: 246 Subject End: 434 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttacac.............................................................................................................................. ...........................................................tttgtaaagataattctcttaaaaagtgataactgcgctttgacgttgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacacgttgatgcacagttagttacataatagatactcgtgtgaaaaatatttacac.............................................................................................................................. Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 2.0E-57 bit: 224.0 Len: 145 Query Start:60 Query End:204 Subject Strand: NEGATIVE Subject Start: 96 Subject End: 240 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataa.......................................................................................................................................................................... ...........................................................tttgtaaaaataattccgttaaaaagcgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgataa.......................................................................................................................................................................... Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 7.0E-57 bit: 222.0 Len: 144 Query Start:59 Query End:202 Subject Strand: POSITIVE Subject Start: 214 Subject End: 357 ..........................................................ctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgat............................................................................................................................................................................ ..........................................................ctttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgat............................................................................................................................................................................ Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 7.0E-57 bit: 222.0 Len: 188 Query Start:60 Query End:247 Subject Strand: NEGATIVE Subject Start: 94 Subject End: 281 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttaca............................................................................................................................... ...........................................................tttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgtaaaacaataggttttgtaaggcgttgataaacaaagagttgcgcaatagaattacttgtgaaaaatatttaca............................................................................................................................... Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 7.0E-57 bit: 222.0 Len: 148 Query Start:54 Query End:201 Subject Strand: POSITIVE Subject Start: 109 Subject End: 256 .....................................................ctttgctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattga............................................................................................................................................................................. .....................................................ctttgttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattga............................................................................................................................................................................. Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 1.0E-55 bit: 218.0 Len: 130 Query Start:60 Query End:189 Subject Strand: POSITIVE Subject Start: 112 Subject End: 241 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggtttt......................................................................................................................................................................................... ...........................................................tttgtaaagataattctgttaaaaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt......................................................................................................................................................................................... Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 1.0E-55 bit: 218.0 Len: 158 Query Start:59 Query End:216 Subject Strand: POSITIVE Subject Start: 199 Subject End: 356 ..........................................................ctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaa.............................................................................................................................................................. ..........................................................ctttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgattagagagttaa.............................................................................................................................................................. Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 1.0E-55 bit: 218.0 Len: 190 Query Start:58 Query End:247 Subject Strand: NEGATIVE Subject Start: 197 Subject End: 386 .........................................................gctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttaca............................................................................................................................... .........................................................gctttgtaaagataattctcttaaaaagtgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccacttttggaacgcaaaacaataggttttgtaacacactgatgattaagaagttaagaaacagacacgcttaggaaaaatgtttaca............................................................................................................................... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 1.0E-52 bit: 208.0 Len: 145 Query Start:60 Query End:204 Subject Strand: NEGATIVE Subject Start: 82 Subject End: 226 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataa.......................................................................................................................................................................... ...........................................................tttgtaaagataattctgttaaaaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgcaatgcattgataa.......................................................................................................................................................................... Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 4.0E-52 bit: 206.0 Len: 136 Query Start:58 Query End:193 Subject Strand: POSITIVE Subject Start: 308 Subject End: 443 .........................................................gctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaa..................................................................................................................................................................................... .........................................................gctttgtaaagataatttctttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtcttgtaa..................................................................................................................................................................................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 6.0E-51 bit: 202.0 Len: 142 Query Start:60 Query End:201 Subject Strand: POSITIVE Subject Start: 147 Subject End: 288 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattga............................................................................................................................................................................. ...........................................................tttgtaaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacattga............................................................................................................................................................................. Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 6.0E-51 bit: 202.0 Len: 134 Query Start:60 Query End:193 Subject Strand: NEGATIVE Subject Start: 693 Subject End: 826 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaa..................................................................................................................................................................................... ...........................................................tttgtaaaaataattctgttaaaaagtgataactgtactttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatacaaaacaataggttttgtaa..................................................................................................................................................................................... Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 2.0E-50 bit: 200.0 Len: 133 Query Start:61 Query End:193 Subject Strand: POSITIVE Subject Start: 170 Subject End: 302 ............................................................ttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaa..................................................................................................................................................................................... ............................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa..................................................................................................................................................................................... Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 2.0E-48 bit: 194.0 Len: 134 Query Start:60 Query End:193 Subject Strand: POSITIVE Subject Start: 186 Subject End: 319 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaa..................................................................................................................................................................................... ...........................................................tttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaa..................................................................................................................................................................................... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 2.0E-48 bit: 194.0 Len: 134 Query Start:60 Query End:193 Subject Strand: POSITIVE Subject Start: 167 Subject End: 300 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaa..................................................................................................................................................................................... ...........................................................tttgtaaagataattctcttaaaaattgataactgcgttttgacattgcgaaagcggctgttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa..................................................................................................................................................................................... Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 2.0E-48 bit: 194.0 Len: 150 Query Start:98 Query End:247 Subject Strand: NEGATIVE Subject Start: 30 Subject End: 179 .................................................................................................tttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttaca............................................................................................................................... .................................................................................................tttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacacgttgataacaagacgattacacaagagatactcttgtgaaaaatatttaca............................................................................................................................... Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 6.0E-48 bit: 192.0 Len: 113 Query Start:78 Query End:190 Subject Strand: POSITIVE Subject Start: 120 Subject End: 232 .............................................................................ttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttg........................................................................................................................................................................................ .............................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg........................................................................................................................................................................................ Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 1.0E-45 bit: 184.0 Len: 105 Query Start:98 Query End:202 Subject Strand: POSITIVE Subject Start: 108 Subject End: 212 .................................................................................................tttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgat............................................................................................................................................................................ .................................................................................................tttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgat............................................................................................................................................................................ Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 6.0E-45 bit: 182.0 Len: 136 Query Start:55 Query End:190 Subject Strand: NEGATIVE Subject Start: 97 Subject End: 232 ......................................................tttgctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttg........................................................................................................................................................................................ ......................................................tttgttttgtaaagataattctgttaaaaactgataactgcgttttgacattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttg........................................................................................................................................................................................ Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 2.0E-44 bit: 180.0 Len: 135 Query Start:59 Query End:193 Subject Strand: NEGATIVE Subject Start: 383 Subject End: 517 ..........................................................ctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaa..................................................................................................................................................................................... ..........................................................ctttgtaaagataattctgatgaaaaatgataatttcgatttggcattgcgaaagcggctgttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaa..................................................................................................................................................................................... Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 2.0E-44 bit: 180.0 Len: 147 Query Start:58 Query End:204 Subject Strand: POSITIVE Subject Start: 255 Subject End: 401 .........................................................gctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataa.......................................................................................................................................................................... .........................................................gctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataa.......................................................................................................................................................................... Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 3.0E-40 bit: 167.0 Len: 144 Query Start:60 Query End:203 Subject Strand: NEGATIVE Subject Start: 397 Subject End: 540 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgata........................................................................................................................................................................... ...........................................................tttgtaaagataattacattgaaaattgataatttcgttttgacgttgcgaaagcggctgttttgcgaggtaaaacctacgcttttgccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaacacgttgata........................................................................................................................................................................... Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 5.0E-39 bit: 163.0 Len: 150 Query Start:98 Query End:247 Subject Strand: POSITIVE Subject Start: 194 Subject End: 343 .................................................................................................tttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttaca............................................................................................................................... .................................................................................................tttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttaca............................................................................................................................... Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 5.0E-39 bit: 163.0 Len: 130 Query Start:60 Query End:189 Subject Strand: POSITIVE Subject Start: 142 Subject End: 271 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggtttt......................................................................................................................................................................................... ...........................................................tttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt......................................................................................................................................................................................... Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 5.0E-39 bit: 163.0 Len: 134 Query Start:60 Query End:193 Subject Strand: POSITIVE Subject Start: 202 Subject End: 334 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaa..................................................................................................................................................................................... ...........................................................tttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggct-gtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaa..................................................................................................................................................................................... Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 145 Query Start:60 Query End:204 Subject Strand: NEGATIVE Subject Start: 26 Subject End: 170 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataa.......................................................................................................................................................................... ...........................................................tttgtaaagataattctgatgaaaaacaataatttcgttttgacgttgcgaaagcggctcttttacaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggttttgtaaagcattgataa.......................................................................................................................................................................... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 201 Query Start:58 Query End:258 Subject Strand: NEGATIVE Subject Start: 110 Subject End: 310 .........................................................gctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttacacgtctatcatc.................................................................................................................... .........................................................gctttgtaaagataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttacaaagcgttgataataaagcagttacgcaaaagatattgttgtgaaaaatatttacacatctttcatc.................................................................................................................... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 1.0E-36 bit: 155.0 Len: 110 Query Start:98 Query End:207 Subject Strand: NEGATIVE Subject Start: 314 Subject End: 423 .................................................................................................tttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataatta....................................................................................................................................................................... .................................................................................................tttgacgttgcgaaagcagctcttttgcaacgcaaaacctatgcttttaccgtgcaaaacagccgcttttaggatgcaaaacaataggttttgtaacgcactgatgatta....................................................................................................................................................................... Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 1.0E-36 bit: 155.0 Len: 134 Query Start:60 Query End:193 Subject Strand: POSITIVE Subject Start: 11 Subject End: 144 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaa..................................................................................................................................................................................... ...........................................................tttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaa..................................................................................................................................................................................... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 5.0E-36 bit: 153.0 Len: 189 Query Start:60 Query End:248 Subject Strand: POSITIVE Subject Start: 192 Subject End: 380 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttacac.............................................................................................................................. ...........................................................tttgtaaagataatttcgttaaaaagtgataactgcactttgacgttgcgaaagcggctgttttacgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttaggacgcaaaacaatagattttgtaatgcattgacaacaagatagttagacaatgtatgctcttgtgaaaaacatttacac.............................................................................................................................. Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 2.0E-32 bit: 141.0 Len: 131 Query Start:60 Query End:190 Subject Strand: POSITIVE Subject Start: 92 Subject End: 222 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttg........................................................................................................................................................................................ ...........................................................tttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttg........................................................................................................................................................................................ Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 2.0E-32 bit: 141.0 Len: 187 Query Start:61 Query End:247 Subject Strand: POSITIVE Subject Start: 113 Subject End: 299 ............................................................ttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttaca............................................................................................................................... ............................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttaca............................................................................................................................... Subject: pint_PI0694_PI0695|Na+/dicarboxylate or sulfate symporter:xanthine/uracil permease family protein|POSITIVE:POSITIVE|[631238,631552]|315 HSP 1 e-value: 2.0E-32 bit: 141.0 Len: 143 Query Start:106 Query End:248 Subject Strand: POSITIVE Subject Start: 135 Subject End: 277 .........................................................................................................tgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttacac.............................................................................................................................. .........................................................................................................tgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggttttgcaaagtgttgatagtgagagagttaagtgaaagatactcttgcgaaaaatatttacac.............................................................................................................................. Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 2.0E-29 bit: 131.0 Len: 186 Query Start:62 Query End:247 Subject Strand: POSITIVE Subject Start: 190 Subject End: 375 .............................................................tgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttaca............................................................................................................................... .............................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttaca............................................................................................................................... Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 1.0E-27 bit: 125.0 Len: 131 Query Start:60 Query End:190 Subject Strand: NEGATIVE Subject Start: 346 Subject End: 476 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttg........................................................................................................................................................................................ ...........................................................tttgtaaagataacattgttaaaaagtgataactgcgctttgacattgcgaaagcgtaggttttgcgatgcaaaagcgccacttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttg........................................................................................................................................................................................ Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 5.0E-27 bit: 123.0 Len: 134 Query Start:60 Query End:193 Subject Strand: POSITIVE Subject Start: 80 Subject End: 213 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaa..................................................................................................................................................................................... ...........................................................tttgtaaagataatttcgttgaaaagtggtaattgcgctttggcattgcgaaagcggctgttttgcgatgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaa..................................................................................................................................................................................... Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 189 Query Start:60 Query End:248 Subject Strand: POSITIVE Subject Start: 227 Subject End: 415 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttacac.............................................................................................................................. ...........................................................tttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaacatattttataacacactgatagataaacagttagataaaagacgttgttatgaaaaatatttacac.............................................................................................................................. Subject: pint_PI1937_PI1938|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1891147,1891993]|847 HSP 1 e-value: 4.0E-24 bit: 113.0 Len: 189 Query Start:59 Query End:247 Subject Strand: POSITIVE Subject Start: 502 Subject End: 690 ..........................................................ctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttaca............................................................................................................................... ..........................................................ctttataaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaaaccattggtaatgaaagggttaaacaacagaaaggcttgcgaaaaatatttaca............................................................................................................................... Subject: pint_PI1981_PI1982|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1938199,1938578]|380 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 188 Query Start:60 Query End:247 Subject Strand: POSITIVE Subject Start: 145 Subject End: 332 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttaca............................................................................................................................... ...........................................................tttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattggtaatgagaaggttagagtatagatgttcttatgaagaatatttaca............................................................................................................................... Subject: pint_PI1324_PI1325|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1243086,1243554]|469 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 147 Query Start:61 Query End:207 Subject Strand: NEGATIVE Subject Start: 244 Subject End: 390 ............................................................ttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataatta....................................................................................................................................................................... ............................................................ttgtaaaaataattctgttaaaaagtgataactgcactttggcattgtaaaagcggctgttttgcatcgcaaaacagccgcttttggctggtaaaagagccgcttttacaatgtaaaacaataggttttgtaattcgttgataatta....................................................................................................................................................................... Subject: pint_PI1958_PI1959|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1917430,1917847]|418 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 130 Query Start:60 Query End:189 Subject Strand: POSITIVE Subject Start: 183 Subject End: 312 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggtttt......................................................................................................................................................................................... ...........................................................tttgtaaagataattctgataaaaaacagcaatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt......................................................................................................................................................................................... Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 131 Query Start:60 Query End:190 Subject Strand: POSITIVE Subject Start: 145 Subject End: 275 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttg........................................................................................................................................................................................ ...........................................................tttgtaaagataattcgttgaaaaaatgataatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttg........................................................................................................................................................................................ HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:110 Query End:144 Subject Strand: NEGATIVE Subject Start: 195 Subject End: 229 .............................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt...................................................................................................................................................................................................................................... .............................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt...................................................................................................................................................................................................................................... Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 4.0E-15 bit: 83.8 Len: 130 Query Start:60 Query End:189 Subject Strand: NEGATIVE Subject Start: 179 Subject End: 308 ...........................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggtttt......................................................................................................................................................................................... ...........................................................tttgtaaagataattttattaaaaagtggcaattgcgttttgacattgcaaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcgaaacaataggtttt......................................................................................................................................................................................... HSP 2 e-value: 9.0E-7 bit: 56.0 Len: 36 Query Start:110 Query End:145 Subject Strand: POSITIVE Subject Start: 224 Subject End: 259 .............................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt..................................................................................................................................................................................................................................... .............................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt..................................................................................................................................................................................................................................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 4.0E-15 bit: 83.8 Len: 142 Query Start:55 Query End:196 Subject Strand: NEGATIVE Subject Start: 184 Subject End: 325 ......................................................tttgctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacac.................................................................................................................................................................................. ......................................................tttgttttgtaaagataattcccttaaaaaaggataactgcgctttggcattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaacacgttttataacac.................................................................................................................................................................................. HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:110 Query End:144 Subject Strand: POSITIVE Subject Start: 236 Subject End: 270 .............................................................................................................aaagcggctcttttgcgatgcaaaacctacgcttt...................................................................................................................................................................................................................................... .............................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt...................................................................................................................................................................................................................................... Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 2.0E-13 bit: 77.8 Len: 143 Query Start:105 Query End:247 Subject Strand: POSITIVE Subject Start: 187 Subject End: 329 ........................................................................................................ttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttaca............................................................................................................................... ........................................................................................................ttgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttaca............................................................................................................................... Subject: pint_PI1728_PI1729|ATP-dependent Clp protease, proteolytic subunit:FKBP-type peptidyl-prolyl cis-trans isomerase, trigger factor|POSITIVE:POSITIVE|[1647719,1648555]|837 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 110 Query Start:139 Query End:248 Subject Strand: NEGATIVE Subject Start: 357 Subject End: 466 ..........................................................................................................................................cgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttacac.............................................................................................................................. ..........................................................................................................................................cgcttttaccgtgcaaaagcggctcttttacaatgcgaaacaataggttttataacacactgataataaaacggttacacaacagttatgcttgtaaaaaatatttacac.............................................................................................................................. HSP 2 e-value: 9.0E-7 bit: 56.0 Len: 36 Query Start:110 Query End:145 Subject Strand: POSITIVE Subject Start: 461 Subject End: 496 .............................................................................................................aaagcggctcttttgcgatgcaaaacctacgctttt..................................................................................................................................................................................................................................... .............................................................................................................aaagcggctcttttgccttgcaaaacctacgctttt..................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGGAUAGGUAUUUUUUAGCAAGUUCCCCUAUGAAGCAGUGCGAAGUUUUUCGCUUUGCUUUGUAAAGAUAAUUCUGUUAAAAAGUGACAACUGCGCUUUGACGUUGCGAAAGCGGCUCUUUUGCGAUGCAAAACCUACGCUUUUACCGUGCAAAACAGCCGCUUUUAGAAUGCAAAACAAUAGGUUUUGUAACACAUUGAUAAUUAAAGAGUUAAACAAUAGAUACUCUUAUGAAAAAUAUUUACACGUCUAUCAUCUUUUUUUCGGUUAUAAAACAACGUGAAUUCGGUGUAAGAAUUGGACGAAAAGACUUCACUUCUUUCUGAUUUAACAAGCAUAUCAAAUCAUAGAAACCCUAUACGCUUGUAGAUUA ..(.(((((((((((((((((((((....((..((((((.(((((....))))).))))))..)).....)))).))))))))))))....(((.(.(((((......((((((((((.(((((((....((((.......))))....))))))).))))))))))...((((..........((((((((((.............((((((............))))))..((((((.....................)))))).))))))))))...((....((((...(((((.((((.(......))))).))))).))))....))..)))).))))).).)))....))))).)............ (-85.70) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUCUACAAGCGUAUAGGGUUUCUAUGAUUUGAUAUGCUUGUUAAAUCAGAAAGAAGUGAAGUCUUUUCGUCCAAUUCUUACACCGAAUUCACGUUGUUUUAUAACCGAAAAAAAGAUGAUAGACGUGUAAAUAUUUUUCAUAAGAGUAUCUAUUGUUUAACUCUUUAAUUAUCAAUGUGUUACAAAACCUAUUGUUUUGCAUUCUAAAAGCGGCUGUUUUGCACGGUAAAAGCGUAGGUUUUGCAUCGCAAAAGAGCCGCUUUCGCAACGUCAAAGCGCAGUUGUCACUUUUUAACAGAAUUAUCUUUACAAAGCAAAGCGAAAAACUUCGCACUGCUUCAUAGGGGAACUUGCUAAAAAAUACCUAUCCUA .........((.(.(((((..((((.((((((((((....))))))))))..(((((((((...((...(((..(((((.......))))).(((((((.........(((...((((..((((...((((((((((......((((((............))))))........))))).)))))....))))..))))...)))..(((((((((.((((((...((((((.(...).))))))...)))))).))))))))).)))))))....))).))...)))))))))...))))...((((((..(((((..(((((....)))))..)))))..))))))................)))))))). (-93.84) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 985 140 91 181 132 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 961 160 111 231 182 pint:PI2003|5end_hypothetical_protein_1960823..1961053_POSITIVE 961 160 111 70 21 pint:PI2002|5end_hypothetical_protein_1960662..1960892_POSITIVE 961 160 111 58 9 pint:PI1129|5end_hypothetical_protein_1055377..1055607_POSITIVE 928 150 101 60 11 pint:PI1601|5end_hypothetical_protein_1530282..1530512_POSITIVE 919 150 103 48 1 pint:PI2144|5end_hypothetical_protein_2091954..2092184_POSITIVE 911 140 91 176 127 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 887 160 111 70 21 pint:PI1346|5end_hypothetical_protein_1260814..1261044_POSITIVE 887 160 111 78 29 pint:PI1168|5end_hypothetical_protein_1089696..1089926_POSITIVE 887 160 111 70 21 pint:PI1167|5end_hypothetical_protein_1089688..1089918_POSITIVE 885 160 111 70 21 pint:PI1829|5end_hypothetical_protein_1769255..1769485_POSITIVE 883 150 101 60 11 pint:PI1567|5end_hypothetical_protein_1489229..1489459_POSITIVE 879 140 91 50 1 pint:PI1694|5end_hypothetical_protein_1609717..1609947_POSITIVE 863 160 111 70 21 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 863 150 101 202 153 pint:PI1486|5end_alginate_O-acetylation_protein_1405507..1405737_POSITIVE 862 167 121 49 3 pint:PI0061|5end_hypothetical_protein_60500..60730_POSITIVE 862 167 121 49 3 pint:PI0004|5end_hypothetical_protein_6199..6429_POSITIVE 855 160 111 58 9 pint:PI1866|5end_hypothetical_protein_1811693..1811923_POSITIVE 845 150 103 60 13 pint:PI1934|5end_hypothetical_protein_1882363..1882593_POSITIVE 832 160 111 119 70 pint:PI0055|5end_hypothetical_protein_54815..55045_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 1009 140 91 92 43 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 961 160 111 53 4 pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE 961 140 91 132 83 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 957 150 101 142 93 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 912 149 101 151 103 pint:PI1601|3end_hypothetical_protein_1530454..1530604_POSITIVE 907 140 91 136 87 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 903 159 111 151 103 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 887 150 103 116 69 pint:PI1356|3end_hypothetical_protein_1273340..1273490_POSITIVE 853 159 111 151 103 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 846 159 111 151 103 pint:PI0670|3end_hypothetical_protein_611280..611430_POSITIVE 834 140 91 132 83 pint:PI0004|3end_hypothetical_protein_6389..6539_POSITIVE 832 160 111 53 4 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 828 140 91 142 93 pint:PI1076|3end_hypothetical_protein_999065..999215_POSITIVE 812 180 131 132 83 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 806 119 71 151 103 pint:PI0104|3end_hypothetical_protein_99346..99496_POSITIVE 777 190 141 55 6 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 777 190 141 55 6 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE 751 200 151 59 10 pint:PI0669|3end_hypothetical_protein_611147..611297_POSITIVE 747 129 81 121 73 pint:PI0200|3end_hypothetical_protein_191735..191885_POSITIVE 707 130 81 122 73 pint:PI0158|3end_hypothetical_protein_151298..151448_POSITIVE