Origin IGS: taatctgaaaatattattcattatcagtacccaccaaaagctaaaaagttaccaacttgctatttgagaaaagtactaaaacacctttgcttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttgaaatatagcgagttagacaacaactatgcttgtgaaaaatatttacactttttgctta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taagcaaaaagtgtaaatatttttcacaagcatagttgttgtctaactcgctatatttcaacgtattgcaaaacctattgttttgcactccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgttttcgcaatgtcaaatcgaaattattactttttaaagaaattatctttacaaaagcaaaggtgttttagtacttttctcaaatagcaagttggtaactttttagcttttggtgggtactgataatgaataatattttcagatta Mask Tandem Repeat Region ================================================ taatctgaaaatattattcattatcagtacccaccaaaagctaaaaagttaccaacttgctatttgagaaaagtactaaaacacctttgcttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttgaaatatagcgagttagacaacaactatgcttgtgaaaaatatttacactttttgctta Find is-nt database================================================ Query_seq: PI1332:PI1333|PI1332:PI1333:aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein:->->:1250627..1250916 290 taatctgaaaatattattcattatcagtacccaccaaaagctaaaaagttaccaacttgctatttgagaaaagtactaaaacacctttgcttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttgaaatatagcgagttagacaacaactatgcttgtgaaaaatatttacactttttgctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1332:PI1333|PI1332:PI1333:aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein:->->:1250627..1250916 290 taatctgaaaatattattcattatcagtacccaccaaaagctaaaaagttaccaacttgctatttgagaaaagtactaaaacacctttgcttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttgaaatatagcgagttagacaacaactatgcttgtgaaaaatatttacactttttgctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1332:PI1333|PI1332:PI1333:aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein:->->:1250627..1250916 290 taatctgaaaatattattcattatcagtacccaccaaaagctaaaaagttaccaacttgctatttgagaaaagtactaaaacacctttgcttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttgaaatatagcgagttagacaacaactatgcttgtgaaaaatatttacactttttgctta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taatctgaaaatattattcattatcagtacccaccaaaagctaaaaagttaccaacttgctatttgagaaaagtactaaaacacctttgcttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttgaaatatagcgagttagacaacaactatgcttgtgaaaaatatttacactttttgctta Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 13 End: 117 ............ M I H Y Q Y P P K A K K L P T C Y L R K V L K H L C F C K D N F F K K ............................................................................................................................................................................. Protein_Len: 60 Strand: + Start: 101 End: 289 .................................................................................................... M I S L K S N N F D L T L R K R L F C N A K P T L L P C K T A A F G V Q N N R F C N T L K Y S E L D N N Y A C E K Y L H . Protein_Len: 34 Strand: - Start: 171 End: 272 .......................................................................................................................................................................... A K V T C F L R K Q L A F C Y T K C Y T S I Y R T L C C S H K H F M .................. Protein_Len: 59 Strand: - Start: 79 End: 255 .............................................................................. F V K A K T F I I E K F L L L K S K V N R F R S N Q L A F G V S K G H L V A A K P T C F L L N Q L V N F Y L S N S L M ................................... Protein_Len: 34 Strand: - Start: 63 End: 164 .............................................................. K L F T S F C R Q K Q L S L K K L F Y Y N R N S M A F V A T K C R M .............................................................................................................................. taatctgaaaatattattcattatcagtacccaccaaaagctaaaaagttaccaacttgctatttgagaaaagtactaaaacacctttgcttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttgaaatatagcgagttagacaacaactatgcttgtgaaaaatatttacactttttgctta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taatctgaaaatattattcattatcagtacccaccaaaagctaaaaagttaccaacttgctatttgagaaaagtactaaaacacctttgcttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttgaaatatagcgagttagacaacaactatgcttgtgaaaaatatttacactttttgctta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 50 HP_score: -4.2 Tail_Score: -3.00017 Start: 87 End: 120 Full_Region: AGTACTAAAACACCT TTGCTTTTGTAAAGA TAATT TCTTTAAAAAGTAA TAATTTCGATTTGAC ......................................................................................TTGCTTTTGTAAAGATAATTTCTTTAAAAAGTAA.......................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -11.2 Tail_Score: -4.13767 Start: 145 End: 195 Full_Region: TTTGACATTGCGAAA ACGGCTGTTTTGCAACGCAAAACC TAC GCTTTTACCGTGCAAAACAGCCGC TTTTGGAGTGCAAAA ................................................................................................................................................ACGGCTGTTTTGCAACGCAAAACCTACGCTTTTACCGTGCAAAACAGCCGC............................................................................................... TransTerm Strand: + Conf: 95 HP_score: -14.7 Tail_Score: -3.08046 Start: 146 End: 194 Full_Region: TTGACATTGCGAAAA CGGCTGTTTTGCAACGCAAAACC TAC GCTTTTACCGTGCAAAACAGCCG CTTTTGGAGTGCAAA .................................................................................................................................................CGGCTGTTTTGCAACGCAAAACCTACGCTTTTACCGTGCAAAACAGCCG................................................................................................ TransTerm Strand: - Conf: 100 HP_score: -16.9 Tail_Score: -4.13014 Start: 146 End: 194 Full_Region: tttgcactccaaaag cggctgttttgcacggtaaaagc gta ggttttgcgttgcaaaacagccg ttttcgcaatgtcaa .................................................................................................................................................cggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccg................................................................................................ TransTerm Strand: + Conf: 49 HP_score: -4.9 Tail_Score: -2.54523 Start: 203 End: 225 Full_Region: ACAGCCGCTTTTGGA GTGCAAAAC AATAG GTTTTGCAA TACGTTGAAATATAG ..........................................................................................................................................................................................................GTGCAAAACAATAGGTTTTGCAA................................................................. Find igs database================================================ Query_seq: PI1332:PI1333|PI1332:PI1333:aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein:->->:1250627..1250916 290 taatctgaaaatattattcattatcagtacccaccaaaagctaaaaagttaccaacttgctatttgagaaaagtactaaaacacctttgcttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttgaaatatagcgagttagacaacaactatgcttgtgaaaaatatttacactttttgctta Intra-Species Hit: Count: 59 Min: 1 Max: 290 Len: 290 Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 1.0E-163 bit: 575.0 Len: 290 Query Start:1 Query End:290 Subject Strand: POSITIVE Subject Start: 1 Subject End: 290 taatctgaaaatattattcattatcagtacccaccaaaagctaaaaagttaccaacttgctatttgagaaaagtactaaaacacctttgcttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttgaaatatagcgagttagacaacaactatgcttgtgaaaaatatttacactttttgctta taatctgaaaatattattcattatcagtacccaccaaaagctaaaaagttaccaacttgctatttgagaaaagtactaaaacacctttgcttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttgaaatatagcgagttagacaacaactatgcttgtgaaaaatatttacactttttgctta Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 1.0E-51 bit: 204.0 Len: 143 Query Start:91 Query End:233 Subject Strand: POSITIVE Subject Start: 215 Subject End: 357 ..........................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttga......................................................... ..........................................................................................ttttgtaaagataatttcgctgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttacaatacgttga......................................................... Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 7.0E-50 bit: 198.0 Len: 188 Query Start:95 Query End:282 Subject Strand: POSITIVE Subject Start: 105 Subject End: 292 ..............................................................................................gtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttgaaatatagcgagttagacaacaactatgcttgtgaaaaatatttacactt........ ..............................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttacactt........ Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 7.0E-50 bit: 198.0 Len: 144 Query Start:90 Query End:233 Subject Strand: NEGATIVE Subject Start: 76 Subject End: 219 .........................................................................................cttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttga......................................................... .........................................................................................cttttgtaaagattatttctttagaaaatggtaatttcgatttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacacgttga......................................................... Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 3.0E-49 bit: 196.0 Len: 143 Query Start:91 Query End:233 Subject Strand: NEGATIVE Subject Start: 293 Subject End: 435 ..........................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttga......................................................... ..........................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacgttgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacacgttga......................................................... Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 2.0E-44 bit: 180.0 Len: 143 Query Start:91 Query End:233 Subject Strand: POSITIVE Subject Start: 113 Subject End: 255 ..........................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttga......................................................... ..........................................................................................ttttgtaaagataatttctttgaaaaatggtaatttcgatttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgttga......................................................... Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 2.0E-44 bit: 180.0 Len: 139 Query Start:91 Query End:229 Subject Strand: NEGATIVE Subject Start: 90 Subject End: 228 ..........................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacg............................................................. ..........................................................................................ttttgtaaagataattctgttaaaaactgataactgcgttttgacattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgcaatacg............................................................. Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 4.0E-42 bit: 172.0 Len: 131 Query Start:91 Query End:221 Subject Strand: POSITIVE Subject Start: 155 Subject End: 285 ..........................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggtttt..................................................................... ..........................................................................................ttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt..................................................................... Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 2.0E-41 bit: 170.0 Len: 114 Query Start:120 Query End:233 Subject Strand: NEGATIVE Subject Start: 375 Subject End: 488 .......................................................................................................................ataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttga......................................................... .......................................................................................................................ataatttcgatttggcattgcgaaagcggctgttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatgcgttga......................................................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 7.0E-41 bit: 168.0 Len: 189 Query Start:91 Query End:279 Subject Strand: POSITIVE Subject Start: 146 Subject End: 334 ..........................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttgaaatatagcgagttagacaacaactatgcttgtgaaaaatatttaca........... ..........................................................................................ttttgtaaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacattgaagcatagcaagttacacaacagttacacctgcgaaaaatatttaca........... Subject: pint_PI0694_PI0695|Na+/dicarboxylate or sulfate symporter:xanthine/uracil permease family protein|POSITIVE:POSITIVE|[631238,631552]|315 HSP 1 e-value: 7.0E-41 bit: 168.0 Len: 105 Query Start:121 Query End:225 Subject Strand: POSITIVE Subject Start: 118 Subject End: 222 ........................................................................................................................taatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaa................................................................. ........................................................................................................................taatttcgatttgacactgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggttttgcaa................................................................. Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 1.0E-39 bit: 165.0 Len: 143 Query Start:91 Query End:233 Subject Strand: NEGATIVE Subject Start: 399 Subject End: 541 ..........................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttga......................................................... ..........................................................................................ttttgtaaagataattacattgaaaattgataatttcgttttgacgttgcgaaagcggctgttttgcgaggtaaaacctacgcttttgccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaacacgttga......................................................... Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 1.0E-39 bit: 165.0 Len: 131 Query Start:91 Query End:221 Subject Strand: NEGATIVE Subject Start: 111 Subject End: 241 ..........................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggtttt..................................................................... ..........................................................................................ttttgtaaaaataattccgttaaaaagcgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt..................................................................... Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 1.0E-39 bit: 165.0 Len: 143 Query Start:91 Query End:233 Subject Strand: POSITIVE Subject Start: 10 Subject End: 152 ..........................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttga......................................................... ..........................................................................................ttttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttga......................................................... Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 1.0E-39 bit: 165.0 Len: 139 Query Start:91 Query End:229 Subject Strand: POSITIVE Subject Start: 50 Subject End: 188 ..........................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacg............................................................. ..........................................................................................ttttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacg............................................................. Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 4.0E-39 bit: 163.0 Len: 142 Query Start:92 Query End:233 Subject Strand: POSITIVE Subject Start: 310 Subject End: 451 ...........................................................................................tttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttga......................................................... ...........................................................................................tttgtaaagataatttctttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtcttgtaatgcgttga......................................................... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 6.0E-38 bit: 159.0 Len: 188 Query Start:92 Query End:279 Subject Strand: POSITIVE Subject Start: 480 Subject End: 667 ...........................................................................................tttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttgaaatatagcgagttagacaacaactatgcttgtgaaaaatatttaca........... ...........................................................................................tttgtaaagataattctgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatgcgttgatacataataagttatataacagttatacttgcgaaaaatatttaca........... Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 3.0E-37 bit: 157.0 Len: 131 Query Start:92 Query End:222 Subject Strand: POSITIVE Subject Start: 149 Subject End: 279 ...........................................................................................tttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttg.................................................................... ...........................................................................................tttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg.................................................................... Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 1.0E-36 bit: 155.0 Len: 130 Query Start:92 Query End:221 Subject Strand: POSITIVE Subject Start: 200 Subject End: 329 ...........................................................................................tttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggtttt..................................................................... ...........................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt..................................................................... Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 1.0E-36 bit: 155.0 Len: 138 Query Start:85 Query End:222 Subject Strand: NEGATIVE Subject Start: 40 Subject End: 177 ....................................................................................ctttgcttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttg.................................................................... ....................................................................................ctttggttttgtaaagataattctgatgaaaaacaataatttcgttttgacgttgcgaaagcggctcttttacaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggttttg.................................................................... Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 1.0E-36 bit: 155.0 Len: 130 Query Start:93 Query End:222 Subject Strand: POSITIVE Subject Start: 170 Subject End: 299 ............................................................................................ttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttg.................................................................... ............................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg.................................................................... Subject: pint_PI1803_PI1804|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1737852,1738248]|397 HSP 1 e-value: 4.0E-36 bit: 153.0 Len: 101 Query Start:121 Query End:221 Subject Strand: POSITIVE Subject Start: 296 Subject End: 396 ........................................................................................................................taatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggtttt..................................................................... ........................................................................................................................taatttcgatttggcattgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttacaatgcaaaacaataggtttt..................................................................... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 2.0E-35 bit: 151.0 Len: 132 Query Start:91 Query End:222 Subject Strand: POSITIVE Subject Start: 166 Subject End: 297 ..........................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttg.................................................................... ..........................................................................................ttttgtaaagataattctcttaaaaattgataactgcgttttgacattgcgaaagcggctgttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg.................................................................... Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 6.0E-35 bit: 149.0 Len: 131 Query Start:92 Query End:222 Subject Strand: NEGATIVE Subject Start: 254 Subject End: 384 ...........................................................................................tttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttg.................................................................... ...........................................................................................tttgtaaagataattctcttaaaaagtgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccacttttggaacgcaaaacaataggttttg.................................................................... Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 6.0E-35 bit: 149.0 Len: 135 Query Start:91 Query End:225 Subject Strand: POSITIVE Subject Start: 114 Subject End: 248 ..........................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaa................................................................. ..........................................................................................ttttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaa................................................................. Subject: pint_PI2056_PI2057|conserved hypothetical protein:conserved hypothetical protein; possible metal-dependent membrane protease|POSITIVE:POSITIVE|[2014489,2015078]|590 HSP 1 e-value: 2.0E-34 bit: 147.0 Len: 138 Query Start:91 Query End:228 Subject Strand: POSITIVE Subject Start: 341 Subject End: 478 ..........................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatac.............................................................. ..........................................................................................ttttgtaaagataattcgttaagaaaacaataatttcgatttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatac.............................................................. Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 2.0E-34 bit: 147.0 Len: 138 Query Start:85 Query End:222 Subject Strand: NEGATIVE Subject Start: 331 Subject End: 468 ....................................................................................ctttgcttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttg.................................................................... ....................................................................................ctttggttttgtaaagataattcgttaagaaaacgataatttcgatttgacgttgcgaaagcagctcttttgcaacgcaaaacctatgcttttaccgtgcaaaacagccgcttttaggatgcaaaacaataggttttg.................................................................... Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 2.0E-34 bit: 147.0 Len: 102 Query Start:120 Query End:221 Subject Strand: POSITIVE Subject Start: 98 Subject End: 199 .......................................................................................................................ataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggtttt..................................................................... .......................................................................................................................ataatttcgatttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt..................................................................... Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 1.0E-33 bit: 145.0 Len: 137 Query Start:92 Query End:228 Subject Strand: POSITIVE Subject Start: 215 Subject End: 351 ...........................................................................................tttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatac.............................................................. ...........................................................................................tttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatac.............................................................. Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 4.0E-33 bit: 143.0 Len: 136 Query Start:91 Query End:226 Subject Strand: NEGATIVE Subject Start: 92 Subject End: 227 ..........................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaat................................................................ ..........................................................................................ttttgtaaagataattctgttaaaaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgcaat................................................................ Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 2.0E-32 bit: 141.0 Len: 143 Query Start:91 Query End:233 Subject Strand: NEGATIVE Subject Start: 83 Subject End: 225 ..........................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttga......................................................... ..........................................................................................ttttgtaaagataattctgttaaaaactgataactgcgctttgacgttgcgaaagcggctcttttacgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgtaatacgttga......................................................... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 2.0E-32 bit: 141.0 Len: 131 Query Start:92 Query End:222 Subject Strand: POSITIVE Subject Start: 60 Subject End: 190 ...........................................................................................tttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttg.................................................................... ...........................................................................................tttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttg.................................................................... Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 9.0E-31 bit: 135.0 Len: 132 Query Start:91 Query End:222 Subject Strand: NEGATIVE Subject Start: 151 Subject End: 282 ..........................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttg.................................................................... ..........................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgtaaaacaataggttttg.................................................................... Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 4.0E-30 bit: 133.0 Len: 131 Query Start:91 Query End:221 Subject Strand: POSITIVE Subject Start: 111 Subject End: 241 ..........................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggtttt..................................................................... ..........................................................................................ttttgtaaagataattctgttaaaaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt..................................................................... Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 2.0E-28 bit: 127.0 Len: 144 Query Start:137 Query End:280 Subject Strand: NEGATIVE Subject Start: 638 Subject End: 781 ........................................................................................................................................ttgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttgaaatatagcgagttagacaacaactatgcttgtgaaaaatatttacac.......... ........................................................................................................................................ttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatacaaaacaataggttttgtaatgagctgatagatagtgaattatgcaacagttatgtttgtgaaaaatatttacac.......... Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 2.0E-28 bit: 127.0 Len: 140 Query Start:94 Query End:233 Subject Strand: POSITIVE Subject Start: 190 Subject End: 329 .............................................................................................tgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttga......................................................... .............................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattga......................................................... Subject: pint_PI0195_PI0196|epimerase/reductase:hypothetical protein|POSITIVE:POSITIVE|[188263,188574]|312 HSP 1 e-value: 2.0E-28 bit: 127.0 Len: 108 Query Start:122 Query End:229 Subject Strand: POSITIVE Subject Start: 176 Subject End: 283 .........................................................................................................................aatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacg............................................................. .........................................................................................................................aatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatacg............................................................. Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 9.0E-28 bit: 125.0 Len: 107 Query Start:120 Query End:226 Subject Strand: NEGATIVE Subject Start: 102 Subject End: 208 .......................................................................................................................ataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaat................................................................ .......................................................................................................................ataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacagccgcttttgccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgcaat................................................................ Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 4.0E-27 bit: 123.0 Len: 138 Query Start:85 Query End:222 Subject Strand: POSITIVE Subject Start: 73 Subject End: 210 ....................................................................................ctttgcttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttg.................................................................... ....................................................................................ctttgcttttgtaaagataatttcgttgaaaagtggtaattgcgctttggcattgcgaaagcggctgttttgcgatgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttg.................................................................... Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 2.0E-25 bit: 117.0 Len: 131 Query Start:91 Query End:221 Subject Strand: POSITIVE Subject Start: 141 Subject End: 271 ..........................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggtttt..................................................................... ..........................................................................................ttttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt..................................................................... Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 2.0E-25 bit: 117.0 Len: 115 Query Start:121 Query End:235 Subject Strand: NEGATIVE Subject Start: 43 Subject End: 157 ........................................................................................................................taatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttgaaa....................................................... ........................................................................................................................taatttcgatttggcgttgcgaaagcggctgttttgcagcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaaagcgttgaaa....................................................... Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 2.0E-25 bit: 117.0 Len: 139 Query Start:84 Query End:222 Subject Strand: POSITIVE Subject Start: 178 Subject End: 316 ...................................................................................cctttgcttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttg.................................................................... ...................................................................................cctttgtttttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttg.................................................................... Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 3.0E-24 bit: 113.0 Len: 137 Query Start:92 Query End:228 Subject Strand: POSITIVE Subject Start: 257 Subject End: 393 ...........................................................................................tttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatac.............................................................. ...........................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatac.............................................................. Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 5.0E-23 bit: 109.0 Len: 135 Query Start:91 Query End:225 Subject Strand: POSITIVE Subject Start: 144 Subject End: 278 ..........................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaa................................................................. ..........................................................................................ttttgtaaagataattcgttgaaaaaatgataatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgcaa................................................................. HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 31 Query Start:146 Query End:176 Subject Strand: NEGATIVE Subject Start: 195 Subject End: 225 .................................................................................................................................................cggctgttttgcaacgcaaaacctacgcttt.................................................................................................................. .................................................................................................................................................cggctcttttgcaacgcaaaacctacgcttt.................................................................................................................. Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 3.0E-21 bit: 103.0 Len: 156 Query Start:78 Query End:233 Subject Strand: NEGATIVE Subject Start: 335 Subject End: 490 .............................................................................aaaacacctttgcttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttga......................................................... .............................................................................aaaacacggttgattttgtaaagataacattgttaaaaagtgataactgcgctttgacattgcgaaagcgtaggttttgcgatgcaaaagcgccacttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgcaatgcgttga......................................................... Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 3.0E-21 bit: 103.0 Len: 148 Query Start:85 Query End:232 Subject Strand: POSITIVE Subject Start: 195 Subject End: 341 ....................................................................................ctttgcttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttg.......................................................... ....................................................................................ctttggttttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttg.......................................................... Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 5.0E-20 bit: 99.6 Len: 114 Query Start:120 Query End:233 Subject Strand: POSITIVE Subject Start: 170 Subject End: 283 .......................................................................................................................ataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttga......................................................... .......................................................................................................................ataatttcgatttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttga......................................................... Subject: pint_PI0854_PI0855|MiaB-like tRNA modifying enzyme:hypothetical protein|POSITIVE:POSITIVE|[788060,789233]|1174 HSP 1 e-value: 5.0E-20 bit: 99.6 Len: 102 Query Start:120 Query End:221 Subject Strand: POSITIVE Subject Start: 770 Subject End: 871 .......................................................................................................................ataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggtttt..................................................................... .......................................................................................................................ataatttcgatttggcgttgcgaaagcgtaggttttgcaacgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt..................................................................... Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 2.0E-19 bit: 97.6 Len: 137 Query Start:85 Query End:221 Subject Strand: NEGATIVE Subject Start: 233 Subject End: 368 ....................................................................................ctttgcttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggtttt..................................................................... ....................................................................................ctttggttttgtaaagataattcattgaaaaacga-taatttcgatttggcattgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacacttttggaatgcaaaacaataggtttt..................................................................... Subject: pint_PI1981_PI1982|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1938199,1938578]|380 HSP 1 e-value: 8.0E-19 bit: 95.6 Len: 100 Query Start:122 Query End:221 Subject Strand: POSITIVE Subject Start: 175 Subject End: 274 .........................................................................................................................aatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggtttt..................................................................... .........................................................................................................................aatttcggtttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt..................................................................... Subject: pint_PI1958_PI1959|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1917430,1917847]|418 HSP 1 e-value: 8.0E-19 bit: 95.6 Len: 100 Query Start:122 Query End:221 Subject Strand: POSITIVE Subject Start: 213 Subject End: 312 .........................................................................................................................aatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggtttt..................................................................... .........................................................................................................................aatttcggtttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt..................................................................... Subject: pint_PI1915_PI1916|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1859967,1860350]|384 HSP 1 e-value: 3.0E-18 bit: 93.7 Len: 102 Query Start:120 Query End:221 Subject Strand: POSITIVE Subject Start: 143 Subject End: 244 .......................................................................................................................ataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacc-tacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggtttt..................................................................... .......................................................................................................................ataatttcgatttggcattgcgaaagcggctgttttgcacggtaaaagcgtatg-ttttacgttgcaaaacagccgcttttggaatgcaaaacaataggtttt..................................................................... HSP 2 e-value: 5.0E-17 bit: 89.7 Len: 53 Query Start:146 Query End:198 Subject Strand: NEGATIVE Subject Start: 165 Subject End: 217 .................................................................................................................................................cggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttt............................................................................................ .................................................................................................................................................cggctgttttgcaacgtaaaacatacgcttttaccgtgcaaaacagccgcttt............................................................................................ Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 1.0E-17 bit: 91.7 Len: 189 Query Start:91 Query End:279 Subject Strand: NEGATIVE Subject Start: 121 Subject End: 309 ..........................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttga-aatatagcgagttagacaacaactatgcttgtgaaaaatatttaca........... ..........................................................................................ttttgtaaagataattttattaaaaagtggcaattgcgttttgacattgcaaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcgaaacaataggttttacaatgccttgattatgaagtg-gttaaacaacaactatgcttatgaaaaatatttaca........... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 1.0E-17 bit: 91.7 Len: 130 Query Start:92 Query End:221 Subject Strand: NEGATIVE Subject Start: 179 Subject End: 308 ...........................................................................................tttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggtttt..................................................................... ...........................................................................................tttgtaaagataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt..................................................................... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 2.0E-16 bit: 87.7 Len: 132 Query Start:91 Query End:222 Subject Strand: POSITIVE Subject Start: 191 Subject End: 322 ..........................................................................................ttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttg.................................................................... ..........................................................................................ttttgtaaagataatttcgttaaaaagtgataactgcactttgacgttgcgaaagcggctgttttacgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttaggacgcaaaacaatagattttg.................................................................... Subject: pint_PI1688_PI1689|possible GTPase:conserved hypothetical protein|POSITIVE:POSITIVE|[1603964,1604449]|486 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 165 Query Start:120 Query End:284 Subject Strand: NEGATIVE Subject Start: 111 Subject End: 275 .......................................................................................................................ataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttgaaatatagcgagttagacaacaactatgcttgtgaaaaatatttacactttt...... .......................................................................................................................ataatttcgatttgacgttgcgaaagcgtatgttttgcgatgcaaaagagccgcttttaccgtgcaaaacctacgcttttacaatgcaaaacaataggttttataacacgctgacagatagcttgttacgcaatggatatacttgtgaaaaatatttacactttt...... Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 129 Query Start:93 Query End:221 Subject Strand: POSITIVE Subject Start: 113 Subject End: 241 ............................................................................................ttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggtttt..................................................................... ............................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt..................................................................... Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 1.0E-11 bit: 71.9 Len: 136 Query Start:78 Query End:213 Subject Strand: POSITIVE Subject Start: 213 Subject End: 348 .............................................................................aaaacacctttgcttttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaa............................................................................. .............................................................................aaaacacttctgcttttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................................................. Subject: pint_PI1324_PI1325|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1243086,1243554]|469 HSP 1 e-value: 1.0E-8 bit: 61.9 Len: 187 Query Start:93 Query End:279 Subject Strand: NEGATIVE Subject Start: 204 Subject End: 390 ............................................................................................ttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttgaaatatagcgagttagacaacaactatgcttgtgaaaaatatttaca........... ............................................................................................ttgtaaaaataattctgttaaaaagtgataactgcactttggcattgtaaaagcggctgttttgcatcgcaaaacagccgcttttggctggtaaaagagccgcttttacaatgtaaaacaataggttttgtaattcgttgataattagtttgttaggcaacagttatgtttgtgaaaaatatttaca........... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUCUGAAAAUAUUAUUCAUUAUCAGUACCCACCAAAAGCUAAAAAGUUACCAACUUGCUAUUUGAGAAAAGUACUAAAACACCUUUGCUUUUGUAAAGAUAAUUUCUUUAAAAAGUAAUAAUUUCGAUUUGACAUUGCGAAAACGGCUGUUUUGCAACGCAAAACCUACGCUUUUACCGUGCAAAACAGCCGCUUUUGGAGUGCAAAACAAUAGGUUUUGCAAUACGUUGAAAUAUAGCGAGUUAGACAACAACUAUGCUUGUGAAAAAUAUUUACACUUUUUGCUUA ....((((.(((.......))).))))..........((((.(((((((....((((((((((((((((...((......))....((((((((.((((((.....))))))))))))))...))))))((..((....(((((.(((((((((((((.((.((((.......))))..))))))))))))))).)))))...((((((((.....))))))))....))..))..))))))))))..((((((....)).)))).............))))))))))). (-72.20) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAGCAAAAAGUGUAAAUAUUUUUCACAAGCAUAGUUGUUGUCUAACUCGCUAUAUUUCAACGUAUUGCAAAACCUAUUGUUUUGCACUCCAAAAGCGGCUGUUUUGCACGGUAAAAGCGUAGGUUUUGCGUUGCAAAACAGCCGUUUUCGCAAUGUCAAAUCGAAAUUAUUACUUUUUAAAGAAAUUAUCUUUACAAAAGCAAAGGUGUUUUAGUACUUUUCUCAAAUAGCAAGUUGGUAACUUUUUAGCUUUUGGUGGGUACUGAUAAUGAAUAAUAUUUUCAGAUUA .................((((..(((.((((.(((..((((.((((((.(((((.((((.......((((((((.....)))))))).....(((((((((((((((((((...(((((....))))).)).)))))))))))))))))..............))))......(((((((((((.....)))))).))))).(((((((......))))))).....))))).))))))))))...))))))).)))..))))((((.((((.....)))).)))).... (-73.00) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 920 200 151 78 29 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 920 200 151 204 155 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 907 210 161 88 39 pint:PI1346|5end_hypothetical_protein_1260814..1261044_POSITIVE 907 210 161 76 27 pint:PI1129|5end_hypothetical_protein_1055377..1055607_POSITIVE 907 210 161 219 170 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 907 210 161 137 88 pint:PI0055|5end_hypothetical_protein_54815..55045_POSITIVE 897 210 161 60 11 pint:PI0061|5end_hypothetical_protein_60500..60730_POSITIVE 897 210 161 60 11 pint:PI0004|5end_hypothetical_protein_6199..6429_POSITIVE 891 200 151 78 29 pint:PI1567|5end_hypothetical_protein_1489229..1489459_POSITIVE 886 220 171 59 10 pint:PI1339|5end_hypothetical_protein_1256671..1256901_POSITIVE 886 220 171 59 10 pint:PI0104|5end_hypothetical_protein_99105..99335_POSITIVE 886 220 171 59 10 pint:PI0053|5end_hypothetical_protein_54727..54957_POSITIVE 881 210 161 88 39 pint:PI2002|5end_hypothetical_protein_1960662..1960892_POSITIVE 876 220 171 55 6 pint:PI1905|5end_hypothetical_protein_1847628..1847858_POSITIVE 852 180 131 200 151 pint:PI1486|5end_alginate_O-acetylation_protein_1405507..1405737_POSITIVE 835 210 161 76 27 pint:PI2144|5end_hypothetical_protein_2091954..2092184_POSITIVE 835 210 161 88 39 pint:PI1934|5end_hypothetical_protein_1882363..1882593_POSITIVE 834 220 171 98 49 pint:PI1076|5end_hypothetical_protein_998893..999123_POSITIVE 830 210 161 88 39 pint:PI1694|5end_hypothetical_protein_1609717..1609947_POSITIVE 825 210 161 71 22 pint:PI1528|5end_hypothetical_protein_1449685..1449915_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 907 210 161 71 22 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 897 210 161 130 81 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 886 220 171 53 4 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE 876 220 171 53 4 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 868 210 161 130 81 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 834 230 181 57 8 pint:PI0669|3end_hypothetical_protein_611147..611297_POSITIVE 830 210 161 71 22 pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE 780 220 172 49 1 pint:PI1051|3end_hypothetical_protein_970228..970378_POSITIVE 776 190 141 150 101 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 765 200 152 134 86 pint:PI1356|3end_hypothetical_protein_1273340..1273490_POSITIVE 739 190 141 150 101 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 736 170 121 151 102 pint:PI1905|3end_hypothetical_protein_1847854..1848004_POSITIVE 723 230 188 43 1 pint:PI1813|3end_hypothetical_protein_1753086..1753236_POSITIVE 704 180 131 140 91 pint:PI0004|3end_hypothetical_protein_6389..6539_POSITIVE 700 190 141 150 101 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 687 180 131 144 95 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 671 180 131 140 91 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 644 180 131 150 101 pint:PI1076|3end_hypothetical_protein_999065..999215_POSITIVE 628 190 141 150 101 pint:PI0670|3end_hypothetical_protein_611280..611430_POSITIVE 618 177 131 151 105 pint:PI1528|3end_hypothetical_protein_1449878..1450028_POSITIVE