Origin IGS:
aaatactactcccaatttttttttcatcatttatacttattgttttgatttgagctgcaaagatatacaaaaaaaatgagagttaccacataagtagtaaagaaaaataaaactgtcagtctgctttatataactttatcttttccgaatagacaaatcttttaattcctgctcttaaatagacgaaaagaaggagatagcgctgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaatattaaaattcttttctccatctgacttcagcaatagaaaggaaaatcattcctcctataagacattatcgaactctta
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9
taagagttcgataatgtcttataggaggaatgattttcctttctattgctgaagtcagatggagaaaagaattttaatattgtaaaaataattctgttaaaaagtgataactgcactttggcattgtaaaagcggctgttttgcatcgcaaaacagccgcttttggctggtaaaagagccgcttttacaatgtaaaacaataggttttgtaattcgttgataattagtttgttaggcaacagttatgtttgtgaaaaatatttacagcgctatctccttcttttcgtctatttaagagcaggaattaaaagatttgtctattcggaaaagataaagttatataaagcagactgacagttttatttttctttactacttatgtggtaactctcattttttttgtatatctttgcagctcaaatcaaaacaataagtataaatgatgaaaaaaaaattgggagtagtattt

Mask Tandem Repeat Region ================================================
aaatactactcccaatttttttttcatcatttatacttattgttttgatttgagctgcaaagatatacaaaaaaaatgagagttaccacataagtagtaaagaaaaataaaactgtcagtctgctttatataactttatcttttccgaatagacaaatcttttaattcctgctcttaaatagacgaaaagaaggagatagcgctgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaatattaaaattcttttctccatctgacttcagcaatagaaaggaaaatcattcctcctataagacattatcgaactctta

Find is-nt database================================================
Query_seq: PI1324:PI1325|PI1324:PI1325:conserved hypothetical protein:conserved hypothetical protein:->->:1243086..1243554 469
aaatactactcccaatttttttttcatcatttatacttattgttttgatttgagctgcaaagatatacaaaaaaaatgagagttaccacataagtagtaaagaaaaataaaactgtcagtctgctttatataactttatcttttccgaatagacaaatcttttaattcctgctcttaaatagacgaaaagaaggagatagcgctgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaatattaaaattcttttctccatctgacttcagcaatagaaaggaaaatcattcctcctataagacattatcgaactctta
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find is-aa database================================================
Query_seq: PI1324:PI1325|PI1324:PI1325:conserved hypothetical protein:conserved hypothetical protein:->->:1243086..1243554 469
aaatactactcccaatttttttttcatcatttatacttattgttttgatttgagctgcaaagatatacaaaaaaaatgagagttaccacataagtagtaaagaaaaataaaactgtcagtctgctttatataactttatcttttccgaatagacaaatcttttaattcctgctcttaaatagacgaaaagaaggagatagcgctgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaatattaaaattcttttctccatctgacttcagcaatagaaaggaaaatcattcctcctataagacattatcgaactctta
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

Find nr database================================================
Query_seq: PI1324:PI1325|PI1324:PI1325:conserved hypothetical protein:conserved hypothetical protein:->->:1243086..1243554 469
aaatactactcccaatttttttttcatcatttatacttattgttttgatttgagctgcaaagatatacaaaaaaaatgagagttaccacataagtagtaaagaaaaataaaactgtcagtctgctttatataactttatcttttccgaatagacaaatcttttaattcctgctcttaaatagacgaaaagaaggagatagcgctgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaatattaaaattcttttctccatctgacttcagcaatagaaaggaaaatcattcctcctataagacattatcgaactctta
Intra-Species Hit: Count: 0
Inter-species Hit: Count: 0

aaatactactcccaatttttttttcatcatttatacttattgttttgatttgagctgcaaagatatacaaaaaaaatgagagttaccacataagtagtaaagaaaaataaaactgtcagtctgctttatataactttatcttttccgaatagacaaatcttttaattcctgctcttaaatagacgaaaagaaggagatagcgctgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaatattaaaattcttttctccatctgacttcagcaatagaaaggaaaatcattcctcctataagacattatcgaactctta
Predict ORF larger than 30AA ================================================
Protein_Len: 38	Strand: +	Start: 257	End: 370
................................................................................................................................................................................................................................................................ M  T  K  P  I  V  L  H  C  K  S  G  S  F  T  S  Q  K  R  L  F  C  D  A  K  Q  P  L  L  Q  C  Q  S  A  V  I  T  F ...................................................................................................
Protein_Len: 60	Strand: +	Start: 228	End: 467
................................................................................................................................................................................................................................... M  L  P  N  K  L  I  I  N  E  L  Q  N  L  L  F  Y  I  V  K  A  A  L  L  P  A  K  S  G  C  F  A  M  Q  N  S  R  F  Y  N  A  K  V  Q  L  S  L  F  N  R  I  I  F  T  I  L  K  F  F  S ..
Protein_Len: 38	Strand: -	Start: 253	End: 366
............................................................................................................................................................................................................................................................ R  I  V  F  G  I  T  K  C  Q  L  L  P  E  K  V  L  W  F  R  S  N  Q  S  A  F  C  G  S  K  C  H  W  L  A  T  I  M .......................................................................................................
Protein_Len: 45	Strand: -	Start: 119	End: 253
...................................................................................................................... D  A  K  Y  L  K  I  K  E  S  Y  V  F  R  K  I  G  A  R  L  Y  V  F  L  L  L  Y  R  Q  L  Y  K  E  C  V  Y  S  N  G  L  L  S  I  I  M ........................................................................................................................................................................................................................
Protein_Len: 30	Strand: -	Start: 40	End: 129
....................................... Q  K  S  K  L  Q  L  S  I  C  F  F  H  S  N  G  C  L  Y  Y  L  F  I  F  S  D  T  Q  K  M ....................................................................................................................................................................................................................................................................................................................................................
Protein_Len: 30	Strand: -	Start: 30	End: 119
............................. K  Y  K  N  N  Q  N  S  S  C  L  Y  V  F  F  I  L  T  V  V  Y  T  T  F  F  F  L  V  T  M ..............................................................................................................................................................................................................................................................................................................................................................

aaatactactcccaatttttttttcatcatttatacttattgttttgatttgagctgcaaagatatacaaaaaaaatgagagttaccacataagtagtaaagaaaaataaaactgtcagtctgctttatataactttatcttttccgaatagacaaatcttttaattcctgctcttaaatagacgaaaagaaggagatagcgctgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaatattaaaattcttttctccatctgacttcagcaatagaaaggaaaatcattcctcctataagacattatcgaactctta
Predict Promoter with matrix: RpoD-15 score > 80================================================

Predict Promoter with matrix: RpoD-16 score > 80================================================

Predict Promoter with matrix: RpoD-17 score > 80================================================
PromScan Matrix: RpoD-17	Strand: -	Score: 82	Start: 279	End: 308
......................................................................................................................................................................................................................................................................................TTTGGCTGGTAAAAGAGCCGCTTTTACAAT.................................................................................................................................................................
PromScan Matrix: RpoD-17	Strand: +	Score: 82	Start: 318	End: 347
.............................................................................................................................................................................................................................................................................................................................TTTGCGATGCAAAACAGCCGCTTTTACAAT..........................................................................................................................

Predict Promoter with matrix: RpoD-18 score > 80================================================

Predict Promoter with matrix: RpoD-19 score > 80================================================

Predict Promoter with matrix: RpoN score > 80================================================

aaatactactcccaatttttttttcatcatttatacttattgttttgatttgagctgcaaagatatacaaaaaaaatgagagttaccacataagtagtaaagaaaaataaaactgtcagtctgctttatataactttatcttttccgaatagacaaatcttttaattcctgctcttaaatagacgaaaagaaggagatagcgctgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaatattaaaattcttttctccatctgacttcagcaatagaaaggaaaatcattcctcctataagacattatcgaactctta
Predict TransTerm conf > 70================================================
TransTerm Strand: +	Conf: 70	HP_score: -6.1	Tail_Score: -4.13767	Start: 301	End: 316	Full_Region: AAGCGGCTCTTTTAC CAGCC AAAAGC GGCTG TTTTGCGATGCAAAA
............................................................................................................................................................................................................................................................................................................CAGCCAAAAGCGGCTG.........................................................................................................................................................
TransTerm Strand: +	Conf: 100	HP_score: -21.9	Tail_Score: -4.13767	Start: 310	End: 338	Full_Region: TTTTACCAGCCAAAA GCGGCTGTTTTGC GAT GCAAAACAGCCGC TTTTACAATGCCAAA
.....................................................................................................................................................................................................................................................................................................................GCGGCTGTTTTGCGATGCAAAACAGCCGC...................................................................................................................................
TransTerm Strand: -	Conf: 100	HP_score: -21.9	Tail_Score: -4.21194	Start: 310	End: 338	Full_Region: tttggcattgtaaaa gcggctgttttgc atc gcaaaacagccgc ttttggctggtaaaa
.....................................................................................................................................................................................................................................................................................................................gcggctgttttgcatcgcaaaacagccgc...................................................................................................................................
TransTerm Strand: +	Conf: 42	HP_score: -3.4	Tail_Score: -2.62933	Start: 431	End: 443	Full_Region: CTTCAGCAATAGAAA GGAA AATCA TTCC TCCTATAAGACATTA
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAATCATTCC..........................

Find igs database================================================
Query_seq: PI1324:PI1325|PI1324:PI1325:conserved hypothetical protein:conserved hypothetical protein:->->:1243086..1243554 469
aaatactactcccaatttttttttcatcatttatacttattgttttgatttgagctgcaaagatatacaaaaaaaatgagagttaccacataagtagtaaagaaaaataaaactgtcagtctgctttatataactttatcttttccgaatagacaaatcttttaattcctgctcttaaatagacgaaaagaaggagatagcgctgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaatattaaaattcttttctccatctgacttcagcaatagaaaggaaaatcattcctcctataagacattatcgaactctta
Intra-Species Hit: Count: 31	Min: 25	Max: 469	Len: 445
Subject: pint_PI1324_PI1325|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1243086,1243554]|469
HSP  1	e-value: 0.0	bit: 835.0	Len: 445	Query Start:25	Query End:469	Subject Strand: POSITIVE	Subject Start: 25	Subject End: 469
........................catcatttatacttattgttttgatttgagctgcaaagatatacnnnnnnnntgagagttaccacataagtagtaaagaaaaataaaactgtcagtctgctttatataactttatcttttccgaatagacaaatcttttaattcctgctcttaaatagacgaaaagaaggagatagcgctgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaatattaaaattcttttctccatctgacttcagcaatagaaaggaaaatcattcctcctataagacattatcgaactctta
........................catcatttatacttattgttttgatttgagctgcaaagatatacaaaaaaaatgagagttaccacataagtagtaaagaaaaataaaactgtcagtctgctttatataactttatcttttccgaatagacaaatcttttaattcctgctcttaaatagacgaaaagaaggagatagcgctgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaatattaaaattcttttctccatctgacttcagcaatagaaaggaaaatcattcctcctataagacattatcgaactctta

Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167
HSP  1	e-value: 4.0E-34	bit: 147.0	Len: 194	Query Start:204	Query End:397	Subject Strand: POSITIVE	Subject Start: 639	Subject End: 832
...........................................................................................................................................................................................................tgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaatattaaa........................................................................
...........................................................................................................................................................................................................tgtaaatatttttcacaaacataactgttgcataattcactatctatcagctcattacaaaacctattgttttgtattccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagtacagttatcactttttaacagaattatttttacaaaattaaa........................................................................

Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826
HSP  1	e-value: 4.0E-25	bit: 117.0	Len: 143	Query Start:248	Query End:390	Subject Strand: NEGATIVE	Subject Start: 481	Subject End: 623
.......................................................................................................................................................................................................................................................tatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa...............................................................................
.......................................................................................................................................................................................................................................................tatcaacgcattacaaaacctattgttttgcattccaaaagcggctgttttgcatggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacagaattatctttacaa...............................................................................

Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544
HSP  1	e-value: 1.0E-24	bit: 115.0	Len: 186	Query Start:204	Query End:389	Subject Strand: NEGATIVE	Subject Start: 190	Subject End: 375
...........................................................................................................................................................................................................tgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttaca................................................................................
...........................................................................................................................................................................................................tgtaaatatttttcacaagggaaactattgcataactatctatacatcaatgtattacaaaacctattgttttgcattccaaaagcgtaggttttacacgataaaagcggctgttttgcgttgcaaaacagccactttcgcaatgtcaaagcgcagttattactttttaacggaattatttttaca................................................................................

Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334
HSP  1	e-value: 6.0E-24	bit: 113.0	Len: 141	Query Start:257	Query End:397	Subject Strand: NEGATIVE	Subject Start: 163	Subject End: 303
................................................................................................................................................................................................................................................................attacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaatattaaa........................................................................
................................................................................................................................................................................................................................................................attacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaatgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacggaattatctttacaagattaaa........................................................................

Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538
HSP  1	e-value: 9.0E-23	bit: 109.0	Len: 187	Query Start:204	Query End:390	Subject Strand: NEGATIVE	Subject Start: 187	Subject End: 373
...........................................................................................................................................................................................................tgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa...............................................................................
...........................................................................................................................................................................................................tgtaaatatttttcacaacaatacctatcgcataacaaactaatcatcaacgccttacaaaacctattgtttcgcattgcaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcacaaaagagccgctttcgcaacgccaaagcgcagttatcaatttttaagagaattatctttacaa...............................................................................

Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365
HSP  1	e-value: 4.0E-22	bit: 107.0	Len: 150	Query Start:204	Query End:353	Subject Strand: NEGATIVE	Subject Start: 180	Subject End: 329
...........................................................................................................................................................................................................tgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaa....................................................................................................................
...........................................................................................................................................................................................................tgtaaatatttttcacaagaatacctattgtataacattctcattatcaacgcaatgcaaaacctattgttttgcattgtaaaagcgtaggttttacacggtcaaagcggctgttttgcgatgcaaaacagccgctttcgcaatgccaaa....................................................................................................................

Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333
HSP  1	e-value: 2.0E-20	bit: 101.0	Len: 187	Query Start:204	Query End:390	Subject Strand: POSITIVE	Subject Start: 37	Subject End: 223
...........................................................................................................................................................................................................tgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa...............................................................................
...........................................................................................................................................................................................................tgtaaatatttttcgcacatatatctattgcttaactatctaatcatcaacgtattacaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcatcgtaaaagagccgctttcgcaacgtcaaagcgcagttatcagtttttaacagaattatctttacaa...............................................................................

Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247
HSP  1	e-value: 2.0E-20	bit: 101.0	Len: 187	Query Start:204	Query End:390	Subject Strand: POSITIVE	Subject Start: 40	Subject End: 226
...........................................................................................................................................................................................................tgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa...............................................................................
...........................................................................................................................................................................................................tgtaaatatttttcacaagcacacctatcgcataaccaccttactgtcagcgtattgcaaaacctattgttttgcgttccaaaagcggctcttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgtcaaaacgcagttatcagtttttaacagaattatctttacaa...............................................................................

Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438
HSP  1	e-value: 2.0E-20	bit: 101.0	Len: 135	Query Start:261	Query End:395	Subject Strand: POSITIVE	Subject Start: 304	Subject End: 438
....................................................................................................................................................................................................................................................................caaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaatatta..........................................................................
....................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaacgtcaaagcgcagttatcactttttaagagaattatctttacaaaatta..........................................................................

Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409
HSP  1	e-value: 9.0E-20	bit: 99.6	Len: 170	Query Start:204	Query End:373	Subject Strand: NEGATIVE	Subject Start: 120	Subject End: 289
...........................................................................................................................................................................................................tgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaa................................................................................................
...........................................................................................................................................................................................................tgtaaatatttttcacaggcataactattgtgtaacttacttgttatcaacgcattgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaa................................................................................................

Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589
HSP  1	e-value: 1.0E-18	bit: 95.6	Len: 144	Query Start:247	Query End:390	Subject Strand: POSITIVE	Subject Start: 137	Subject End: 280
......................................................................................................................................................................................................................................................ttatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa...............................................................................
......................................................................................................................................................................................................................................................ttatcaacgccttacaaaacctattgttttacgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaa...............................................................................

Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539
HSP  1	e-value: 5.0E-18	bit: 93.7	Len: 215	Query Start:183	Query End:397	Subject Strand: NEGATIVE	Subject Start: 106	Subject End: 320
......................................................................................................................................................................................acgaaaagaaggagatagcgctgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaatattaaa........................................................................
......................................................................................................................................................................................acgaaaagaaggtaataaaggtgtaaatatttttcgtaaagataattattacttaactatctaaccatcaacgcattataaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcagtttttaacagaattatctttacaaaattaaa........................................................................

Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374
HSP  1	e-value: 5.0E-18	bit: 93.7	Len: 147	Query Start:244	Query End:390	Subject Strand: NEGATIVE	Subject Start: 61	Subject End: 207
...................................................................................................................................................................................................................................................taattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa...............................................................................
...................................................................................................................................................................................................................................................taattatcaatgtgttacaaaacctattgttttgcattctaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttgtcactttttaacagaattatctttacaa...............................................................................

Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523
HSP  1	e-value: 2.0E-17	bit: 91.7	Len: 150	Query Start:204	Query End:353	Subject Strand: POSITIVE	Subject Start: 49	Subject End: 198
...........................................................................................................................................................................................................tgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaa....................................................................................................................
...........................................................................................................................................................................................................tgtaaatatttttcacaagcaaagatattacataactaactcgttatcaacacattgcaaaacctattgttttgcattccaaaagcgtaggttttacacggcaaaagcggctgttttgcgttgcaaaacagccgctttcgcaatgccaaa....................................................................................................................
HSP  2	e-value: 1.0E-6	bit: 56.0	Len: 36	Query Start:307	Query End:342	Subject Strand: NEGATIVE	Subject Start: 151	Subject End: 186
..................................................................................................................................................................................................................................................................................................................aaagcggctgttttgcgatgcaaaacagccgctttt...............................................................................................................................
..................................................................................................................................................................................................................................................................................................................aaagcggctgttttgcaacgcaaaacagccgctttt...............................................................................................................................

Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249
HSP  1	e-value: 8.0E-17	bit: 89.7	Len: 129	Query Start:262	Query End:390	Subject Strand: POSITIVE	Subject Start: 111	Subject End: 239
.....................................................................................................................................................................................................................................................................aaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa...............................................................................
.....................................................................................................................................................................................................................................................................aaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcgctttttaacggaattatttttacaa...............................................................................

Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340
HSP  1	e-value: 3.0E-16	bit: 87.7	Len: 144	Query Start:247	Query End:390	Subject Strand: POSITIVE	Subject Start: 82	Subject End: 225
......................................................................................................................................................................................................................................................ttatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa...............................................................................
......................................................................................................................................................................................................................................................ttatcaatgcattgcaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaagagccgctttcgcaatgccaaagcgcagttatcagtttttaacagaattatctttacaa...............................................................................

Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348
HSP  1	e-value: 3.0E-16	bit: 87.7	Len: 140	Query Start:251	Query End:390	Subject Strand: NEGATIVE	Subject Start: 203	Subject End: 341
..........................................................................................................................................................................................................................................................caacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa...............................................................................
..........................................................................................................................................................................................................................................................caacgcattacaaaacctattgttttgcattccaaaagcgtaggttttgcacggtaaaagcggctgttttgcatcgcaaa-cagccgctttcgcaacgccaaagcgcagttatcactttttaagagaattatctttacaa...............................................................................
HSP  2	e-value: 7.0E-8	bit: 60.0	Len: 38	Query Start:307	Query End:344	Subject Strand: POSITIVE	Subject Start: 252	Subject End: 288
..................................................................................................................................................................................................................................................................................................................aaagcggctgttttgcgatgcaaaacagccgcttttac.............................................................................................................................
..................................................................................................................................................................................................................................................................................................................aaagcggctgttt-gcgatgcaaaacagccgcttttac.............................................................................................................................

Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542
HSP  1	e-value: 1.0E-15	bit: 85.7	Len: 187	Query Start:204	Query End:390	Subject Strand: NEGATIVE	Subject Start: 52	Subject End: 238
...........................................................................................................................................................................................................tgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa...............................................................................
...........................................................................................................................................................................................................tgtaaatatttttcacaagcttacctattacgtaactatctaaccatcagcgtattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaacggaattatctttacaa...............................................................................

Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617
HSP  1	e-value: 5.0E-15	bit: 83.8	Len: 134	Query Start:257	Query End:390	Subject Strand: NEGATIVE	Subject Start: 148	Subject End: 281
................................................................................................................................................................................................................................................................attacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa...............................................................................
................................................................................................................................................................................................................................................................attacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcattttttaagagaattatctttacaa...............................................................................

Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418
HSP  1	e-value: 5.0E-15	bit: 83.8	Len: 130	Query Start:261	Query End:390	Subject Strand: NEGATIVE	Subject Start: 116	Subject End: 245
....................................................................................................................................................................................................................................................................caaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa...............................................................................
....................................................................................................................................................................................................................................................................caaaacctattgttttgcattccaaaagcggctgttttgcacgctaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcagttatcgctttttaacagaataatctttacaa...............................................................................

Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719
HSP  1	e-value: 2.0E-14	bit: 81.8	Len: 149	Query Start:242	Query End:390	Subject Strand: POSITIVE	Subject Start: 367	Subject End: 515
.................................................................................................................................................................................................................................................actaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa...............................................................................
.................................................................................................................................................................................................................................................actaaatatcaacgcattacaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaacagccgctttcgcaatgccaaatcgaaattatcatttttcatcagaattatctttacaa...............................................................................

Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428
HSP  1	e-value: 2.0E-14	bit: 81.8	Len: 189	Query Start:202	Query End:390	Subject Strand: NEGATIVE	Subject Start: 81	Subject End: 269
.........................................................................................................................................................................................................gctgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa...............................................................................
.........................................................................................................................................................................................................gctgtaaatatttttcacaagcaccactattaaataacaatctgtgtatcaacacattacaaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggctcttttgcatcgcaaaacagccgctttcgcaatgccaaagcgcaattaccacttttcaacgaaattatctttacaa...............................................................................
HSP  2	e-value: 3.0E-10	bit: 67.9	Len: 38	Query Start:307	Query End:344	Subject Strand: POSITIVE	Subject Start: 130	Subject End: 167
..................................................................................................................................................................................................................................................................................................................aaagcggctgttttgcgatgcaaaacagccgcttttac.............................................................................................................................
..................................................................................................................................................................................................................................................................................................................aaagcggctgttttgcgatgcaaaagagccgcttttac.............................................................................................................................

Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553
HSP  1	e-value: 2.0E-14	bit: 81.8	Len: 133	Query Start:258	Query End:390	Subject Strand: POSITIVE	Subject Start: 251	Subject End: 383
.................................................................................................................................................................................................................................................................ttacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa...............................................................................
.................................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagtggctgttttgcacggtaaaagcgtaggttttgcaacgcaaaacagccgctttcgcaatgtcaaaacgcagttatcactttttaagagaattatctttacaa...............................................................................

Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610
HSP  1	e-value: 1.0E-12	bit: 75.8	Len: 134	Query Start:257	Query End:390	Subject Strand: NEGATIVE	Subject Start: 168	Subject End: 301
................................................................................................................................................................................................................................................................attacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa...............................................................................
................................................................................................................................................................................................................................................................attacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcagcgcaaaacagccgctttcgcaatgtcaaaacgcagttatcaatttttaagagaattatctttacaa...............................................................................

Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525
HSP  1	e-value: 5.0E-12	bit: 73.8	Len: 133	Query Start:258	Query End:390	Subject Strand: NEGATIVE	Subject Start: 150	Subject End: 282
.................................................................................................................................................................................................................................................................ttacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa...............................................................................
.................................................................................................................................................................................................................................................................ttacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaatgtcaaagcgcggttatcactttttaacggaattatctttacaa...............................................................................

Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720
HSP  1	e-value: 2.0E-11	bit: 71.9	Len: 144	Query Start:247	Query End:390	Subject Strand: NEGATIVE	Subject Start: 311	Subject End: 454
......................................................................................................................................................................................................................................................ttatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa...............................................................................
......................................................................................................................................................................................................................................................ttatcaacgcattacaagacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcatcgcaaaagagccgctttcgcaacgccaaagcgcagttatcactttttaaagaaattatctttacaa...............................................................................

Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387
HSP  1	e-value: 3.0E-10	bit: 67.9	Len: 106	Query Start:248	Query End:353	Subject Strand: NEGATIVE	Subject Start: 254	Subject End: 359
.......................................................................................................................................................................................................................................................tatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaa....................................................................................................................
.......................................................................................................................................................................................................................................................tatcaacgtattgtaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgctttcgcaatgccaaa....................................................................................................................

Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290
HSP  1	e-value: 2.0E-8	bit: 61.9	Len: 187	Query Start:204	Query End:390	Subject Strand: NEGATIVE	Subject Start: 93	Subject End: 279
...........................................................................................................................................................................................................tgtaaatatttttcacaaacataactgttgcctaacaaactaattatcaacgaattacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattatttttacaa...............................................................................
...........................................................................................................................................................................................................tgtaaatatttttcacaagcatagttgttgtctaactcgctatatttcaacgtattgcaaaacctattgttttgcactccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaacagccgttttcgcaatgtcaaatcgaaattattactttttaaagaaattatctttacaa...............................................................................

Subject: pint_PI1937_PI1938|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1891147,1891993]|847
HSP  1	e-value: 7.0E-8	bit: 60.0	Len: 130	Query Start:258	Query End:387	Subject Strand: NEGATIVE	Subject Start: 507	Subject End: 636
.................................................................................................................................................................................................................................................................ttacaaaacctattgttttacattgtaaaagcggctcttttaccagccaaaagcggctgttttgcgatgcaaaacagccgcttttacaatgccaaagtgcagttatcactttttaacagaattattttta..................................................................................
.................................................................................................................................................................................................................................................................ttacaaagcctattgttttacgttctaaaagcgtaggttttgcaaggtaaaagcggctcttttggcgtgcaaaagttacgctttcgcaacgccaaagcgcagttatcgctttttaacagaattatcttta..................................................................................

Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497
HSP  1	e-value: 7.0E-8	bit: 60.0	Len: 38	Query Start:202	Query End:239	Subject Strand: NEGATIVE	Subject Start: 409	Subject End: 446
.........................................................................................................................................................................................................gctgtaaatatttttcacaaacataactgttgcctaac......................................................................................................................................................................................................................................
.........................................................................................................................................................................................................gctgtaaatatttttcacaaacataactattgcataac......................................................................................................................................................................................................................................
HSP  2	e-value: 1.0E-6	bit: 56.0	Len: 40	Query Start:351	Query End:390	Subject Strand: NEGATIVE	Subject Start: 258	Subject End: 297
..............................................................................................................................................................................................................................................................................................................................................................aaagtgcagttatcactttttaacagaattatttttacaa...............................................................................
..............................................................................................................................................................................................................................................................................................................................................................aaagcgcagttatcactttttaacggaattatatttacaa...............................................................................

Inter-species Hit: Count: 0

Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
CAUCAUUUAUACUUAUUGUUUUGAUUUGAGCUGCAAAGAUAUACAAAAAAAAUGAGAGUUACCACAUAAGUAGUAAAGAAAAAUAAAACUGUCAGUCUGCUUUAUAUAACUUUAUCUUUUCCGAAUAGACAAAUCUUUUAAUUCCUGCUCUUAAAUAGACGAAAAGAAGGAGAUAGCGCUGUAAAUAUUUUUCACAAACAUAACUGUUGCCUAACAAACUAAUUAUCAACGAAUUACAAAACCUAUUGUUUUACAUUGUAAAAGCGGCUCUUUUACCAGCCAAAAGCGGCUGUUUUGCGAUGCAAAACAGCCGCUUUUACAAUGCCAAAGUGCAGUUAUCACUUUUUAACAGAAUUAUUUUUACAAUAUUAAAAUUCUUUUCUCCAUCUGACUUCAGCAAUAGAAAGGAAAAUCAUUCCUCCUAUAAGACAUUAUCGAACUCUUA
...............((((.....((((.....)))).....))))......((((((((.........(((((...((((((((.......((((..(((........(((..(((((((.(((((((....)))....))))....(((.....))).)))))))..)))..)))))))....))))))))............((((..(((........))).))))..))))).........(((((((.((((((((((..((.((((...((...(((((((((((((((((...)))))))))))))))))....))..)))).)).((((........)))).......)))))))))).......(((((((((....(((....)))....)))))))))..............)))))))......)))))))) (-87.20)

Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================
UAAGAGUUCGAUAAUGUCUUAUAGGAGGAAUGAUUUUCCUUUCUAUUGCUGAAGUCAGAUGGAGAAAAGAAUUUUAAUAUUGUAAAAAUAAUUCUGUUAAAAAGUGAUAACUGCACUUUGGCAUUGUAAAAGCGGCUGUUUUGCAUCGCAAAACAGCCGCUUUUGGCUGGUAAAAGAGCCGCUUUUACAAUGUAAAACAAUAGGUUUUGUAAUUCGUUGAUAAUUAGUUUGUUAGGCAACAGUUAUGUUUGUGAAAAAUAUUUACAGCGCUAUCUCCUUCUUUUCGUCUAUUUAAGAGCAGGAAUUAAAAGAUUUGUCUAUUCGGAAAAGAUAAAGUUAUAUAAAGCAGACUGACAGUUUUAUUUUUCUUUACUACUUAUGUGGUAACUCUCAUUUUUUUUGUAUAUCUUUGCAGCUCAAAUCAAAACAAUAAGUAUAAAUGAUG
...((((((((..((((...(((((((((((((..(((.(((((....(((....)))....))))).)))............((((((((..((((((.((((((.......)))))).(((((((((((((((((.((((((.........((((((....)))))))))))).)))))))))))))))))..........((((((((...(((((.(((.((.(((..((((((.......))))))...))).)).)))))))).....((((.(((((.(.....).))))).)))).........(((((((.........)))))))....))))))))....))))))..))))))))..(((((((....)))))))...)))))))))))))))))..))).)))))........................... (-111.10)

Find mRNA Target Using  Conserved IGS================================================
5'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
837	330	282	79	31	pint:PI0659|5end_hypothetical_protein_603203..603433_POSITIVE
808	329	282	220	173	pint:PI0196|5end_hypothetical_protein_188435..188665_POSITIVE
779	330	282	155	107	pint:PI1371|5end_hypothetical_protein_1292359..1292589_POSITIVE
708	340	292	230	182	pint:PI0991|5end_conserved_hypothetical_protein_915309..915539_POSITIVE
692	349	301	220	168	pint:PI0211|5end_hypothetical_protein_204067..204297_POSITIVE
677	340	292	103	55	pint:PI2022|5end_hypothetical_protein_1978631..1978861_POSITIVE
677	340	292	57	9	pint:PI2023|5end_hypothetical_protein_1978585..1978815_POSITIVE
673	349	301	54	6	pint:PI1041|5end_hypothetical_protein_960443..960673_POSITIVE
673	325	283	199	157	pint:PI0159|5end_hypothetical_protein_151273..151503_POSITIVE
673	325	283	111	69	pint:PI0157|5end_hypothetical_protein_151185..151415_POSITIVE
661	318	283	38	3	pint:PI1195|5end_hypothetical_protein_1113171..1113401_POSITIVE
660	350	301	153	99	pint:PI0867|5end_hypothetical_protein_803859..804089_POSITIVE
660	350	301	70	16	pint:PI0866|5end_hypothetical_protein_803776..804006_POSITIVE
628	340	292	84	36	pint:PI0568|5end_hypothetical_protein_512950..513180_POSITIVE
625	319	279	182	143	pint:PI2111|5end_conserved_hypothetical_protein_2062771..2063001_POSITIVE
623	329	282	219	172	pint:PI1437|5end_hypothetical_protein_1356088..1356318_POSITIVE
623	329	282	92	45	pint:PI1436|5end_hypothetical_protein_1355961..1356191_POSITIVE
617	329	282	225	178	pint:PI0024|5end_hypothetical_protein_28378..28608_POSITIVE
613	330	283	67	20	pint:PI1934|5end_hypothetical_protein_1882363..1882593_POSITIVE
611	340	292	84	36	pint:PI0089|5end_hypothetical_protein_88162..88392_POSITIVE

3'END mRNA Target Prediction===================================
Score	srna_start	srna_end	target_start	tegart_end	seq_id
673	325	283	144	102	pint:PI0158|3end_hypothetical_protein_151298..151448_POSITIVE
665	316	271	151	106	pint:PI1512|3end_hypothetical_protein_1429893..1430043_POSITIVE
656	325	283	138	96	pint:PI0182|3end_hypothetical_protein_174277..174427_POSITIVE
642	329	282	147	100	pint:PI1521|3end_hypothetical_protein_1441461..1441611_POSITIVE
642	329	282	56	9	pint:PI1520|3end_hypothetical_protein_1441370..1441520_POSITIVE
628	340	292	109	61	pint:PI0567|3end_hypothetical_protein_513055..513205_POSITIVE
592	325	283	148	106	pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE
592	325	283	144	102	pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE
537	325	283	45	3	pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE
520	325	283	45	3	pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE
520	325	283	104	62	pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE
520	325	283	144	102	pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE
511	325	283	144	102	pint:PI0004|3end_hypothetical_protein_6389..6539_POSITIVE
510	325	283	104	62	pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE
505	310	261	150	101	pint:PI0637|3end_hypothetical_protein_582397..582547_POSITIVE
501	325	281	144	100	pint:PI0551|3end_hypothetical_protein_502683..502833_POSITIVE
498	320	279	149	109	pint:PI1601|3end_hypothetical_protein_1530454..1530604_POSITIVE
496	325	283	144	102	pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE
496	329	282	147	100	pint:PI0905|3end_hypothetical_protein_834697..834847_POSITIVE
496	325	283	144	102	pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE