Origin IGS: aagattttagagttttaattatcaactttttaggtttcgttatttttctttacaaagatacatatatagataataaattctcaaaagaagtattaatttaacaatcttttaacactaaaacatcttaaaaagaagccgaaaccaatgcaaaagaataatattccgaaacctttctgagcgttaaggactgacaaaagtacaggttctgaagatatttatacccattctaatactatttacgtgcgtgaaaattgaattatcacagctgtgagaaatatttatctaagctgtgagaaattattatctaagcttagataaatacttatcaaagcttagataatttaaaatacacgtagaaaaatcatactatatacggtttcccacgaaagggaaacgtgccaaaataatatcggaacctctgcaagggtctatcctgacatcagaaacaaggatatggcttattgattatctgtttacaaaaaatagttttgcagaagtcgcaaagcattattttcgatacttacactattaaggagaatacaaaaacatacagaaaaaggattgcacaaacacgatgtgcaatcctttttctgtatgcttgatggagatta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taatctccatcaagcatacagaaaaaggattgcacatcgtgtttgtgcaatcctttttctgtatgtttttgtattctccttaatagtgtaagtatcgaaaataatgctttgcgacttctgcaaaactattttttgtaaacagataatcaataagccatatccttgtttctgatgtcaggatagacccttgcagaggttccgatattattttggcacgtttccctttcgtgggaaaccgtatatagtatgatttttctacgtgtattttaaattatctaagctttgataagtatttatctaagcttagataataatttctcacagcttagataaatatttctcacagctgtgataattcaattttcacgcacgtaaatagtattagaatgggtataaatatcttcagaacctgtacttttgtcagtccttaacgctcagaaaggtttcggaatattattcttttgcattggtttcggcttctttttaagatgttttagtgttaaaagattgttaaattaatacttcttttgagaatttattatctatatatgtatctttgtaaagaaaaataacgaaacctaaaaagttgataattaaaactctaaaatctt Mask Tandem Repeat Region ================================================ aagattttagagttttaattatcaactttttaggtttcgttatttttctttacaaagatacatatatagataataaattctcaaaagaagtattaatttaacaatcttttaacactaaaacatcttaaaaagaagccgaaaccaatgcaaaagaataatattccgaaacctttctgagcgttaaggactgacaaaagtacaggttctgaagatatttatacccattctaatactatttacgtgcgtgaaaattgaattatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagataatttaaaatacacgtagaaaaatcatactatatacggtttcccacgaaagggaaacgtgccaaaataatatcggaacctctgcaagggtctatcctgacatcagaaacaaggatatggcttattgattatctgtttacaaaaaatagttttgcagaagtcgcaaagcattattttcgatacttacactattaaggagaatacaaaaacatacagaaaaaggattgcacaaacacgatgtgcaatcctttttctgtatgcttgatggagatta Find is-nt database================================================ Query_seq: PI1305:PI1306|PI1305:PI1306:conserved hypothetical protein:dipeptidyl peptidase IV:->->:1219793..1220403 611 aagattttagagttttaattatcaactttttaggtttcgttatttttctttacaaagatacatatatagataataaattctcaaaagaagtattaatttaacaatcttttaacactaaaacatcttaaaaagaagccgaaaccaatgcaaaagaataatattccgaaacctttctgagcgttaaggactgacaaaagtacaggttctgaagatatttatacccattctaatactatttacgtgcgtgaaaattgaattatcacagctgtgagaaatatttatctaagctgtgagaaattattatctaagcttagataaatacttatcaaagcttagataatttaaaatacacgtagaaaaatcatactatatacggtttcccacgaaagggaaacgtgccaaaataatatcggaacctctgcaagggtctatcctgacatcagaaacaaggatatggcttattgattatctgtttacaaaaaatagttttgcagaagtcgcaaagcattattttcgatacttacactattaaggagaatacaaaaacatacagaaaaaggattgcacaaacacgatgtgcaatcctttttctgtatgcttgatggagatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1305:PI1306|PI1305:PI1306:conserved hypothetical protein:dipeptidyl peptidase IV:->->:1219793..1220403 611 aagattttagagttttaattatcaactttttaggtttcgttatttttctttacaaagatacatatatagataataaattctcaaaagaagtattaatttaacaatcttttaacactaaaacatcttaaaaagaagccgaaaccaatgcaaaagaataatattccgaaacctttctgagcgttaaggactgacaaaagtacaggttctgaagatatttatacccattctaatactatttacgtgcgtgaaaattgaattatcacagctgtgagaaatatttatctaagctgtgagaaattattatctaagcttagataaatacttatcaaagcttagataatttaaaatacacgtagaaaaatcatactatatacggtttcccacgaaagggaaacgtgccaaaataatatcggaacctctgcaagggtctatcctgacatcagaaacaaggatatggcttattgattatctgtttacaaaaaatagttttgcagaagtcgcaaagcattattttcgatacttacactattaaggagaatacaaaaacatacagaaaaaggattgcacaaacacgatgtgcaatcctttttctgtatgcttgatggagatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1305:PI1306|PI1305:PI1306:conserved hypothetical protein:dipeptidyl peptidase IV:->->:1219793..1220403 611 aagattttagagttttaattatcaactttttaggtttcgttatttttctttacaaagatacatatatagataataaattctcaaaagaagtattaatttaacaatcttttaacactaaaacatcttaaaaagaagccgaaaccaatgcaaaagaataatattccgaaacctttctgagcgttaaggactgacaaaagtacaggttctgaagatatttatacccattctaatactatttacgtgcgtgaaaattgaattatcacagctgtgagaaatatttatctaagctgtgagaaattattatctaagcttagataaatacttatcaaagcttagataatttaaaatacacgtagaaaaatcatactatatacggtttcccacgaaagggaaacgtgccaaaataatatcggaacctctgcaagggtctatcctgacatcagaaacaaggatatggcttattgattatctgtttacaaaaaatagttttgcagaagtcgcaaagcattattttcgatacttacactattaaggagaatacaaaaacatacagaaaaaggattgcacaaacacgatgtgcaatcctttttctgtatgcttgatggagatta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 aagattttagagttttaattatcaactttttaggtttcgttatttttctttacaaagatacatatatagataataaattctcaaaagaagtattaatttaacaatcttttaacactaaaacatcttaaaaagaagccgaaaccaatgcaaaagaataatattccgaaacctttctgagcgttaaggactgacaaaagtacaggttctgaagatatttatacccattctaatactatttacgtgcgtgaaaattgaattatcacagctgtgagaaatatttatctaagctgtgagaaattattatctaagcttagataaatacttatcaaagcttagataatttaaaatacacgtagaaaaatcatactatatacggtttcccacgaaagggaaacgtgccaaaataatatcggaacctctgcaagggtctatcctgacatcagaaacaaggatatggcttattgattatctgtttacaaaaaatagttttgcagaagtcgcaaagcattattttcgatacttacactattaaggagaatacaaaaacatacagaaaaaggattgcacaaacacgatgtgcaatcctttttctgtatgcttgatggagatta Predict ORF larger than 30AA ================================================ Protein_Len: 34 Strand: + Start: 361 End: 462 ........................................................................................................................................................................................................................................................................................................................................................................ M I L Y T V S H E R E T C Q N N I G T S A R V Y P D I R N K D M A Y ..................................................................................................................................................... Protein_Len: 60 Strand: + Start: 347 End: 529 .......................................................................................................................................................................................................................................................................................................................................................... M H V E K S Y Y I R F P T K G K R A K I I S E P L Q G S I L T S E T R I W L I D Y L F T K N S F A E V A K H Y F R Y L H .................................................................................. Protein_Len: 46 Strand: + Start: 462 End: 599 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. M I I C L Q K I V L Q K S Q S I I F D T Y T I K E N T K T Y R K R I A Q T R C A I L F L Y A ............ Protein_Len: 31 Strand: + Start: 517 End: 609 .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... M L T L L R R I Q K H T E K G L H K H D V Q S F F C M L D G D .. Protein_Len: 40 Strand: - Start: 477 End: 596 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ L F Y N Q L L R L A N N E I S V S N L L I C F C V S F P N C L C S T C D K K Q M ............... Protein_Len: 31 Strand: - Start: 370 End: 462 ................................................................................................................................................................................................................................................................................................................................................................................. I R N G V F P F R A L I I D S G R C P D I R V D S V L I H S M ..................................................................................................................................................... Protein_Len: 33 Strand: - Start: 184 End: 282 ....................................................................................................................................................................................... P S V F T C T R F I N I G M R I S N V H T F I S N D C S H S I N M ......................................................................................................................................................................................................................................................................................................................................... Protein_Len: 40 Strand: - Start: 96 End: 215 ............................................................................................... N L L R K V S F C R L F F G F G I C F F L I G F G K Q A N L V S L L V P E S S M ............................................................................................................................................................................................................................................................................................................................................................................................................ aagattttagagttttaattatcaactttttaggtttcgttatttttctttacaaagatacatatatagataataaattctcaaaagaagtattaatttaacaatcttttaacactaaaacatcttaaaaagaagccgaaaccaatgcaaaagaataatattccgaaacctttctgagcgttaaggactgacaaaagtacaggttctgaagatatttatacccattctaatactatttacgtgcgtgaaaattgaattatcacagctgtgagaaatatttatctaagctgtgagaaattattatctaagcttagataaatacttatcaaagcttagataatttaaaatacacgtagaaaaatcatactatatacggtttcccacgaaagggaaacgtgccaaaataatatcggaacctctgcaagggtctatcctgacatcagaaacaaggatatggcttattgattatctgtttacaaaaaatagttttgcagaagtcgcaaagcattattttcgatacttacactattaaggagaatacaaaaacatacagaaaaaggattgcacaaacacgatgtgcaatcctttttctgtatgcttgatggagatta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aagattttagagttttaattatcaactttttaggtttcgttatttttctttacaaagatacatatatagataataaattctcaaaagaagtattaatttaacaatcttttaacactaaaacatcttaaaaagaagccgaaaccaatgcaaaagaataatattccgaaacctttctgagcgttaaggactgacaaaagtacaggttctgaagatatttatacccattctaatactatttacgtgcgtgaaaattgaattatcacagctgtgagaaatatttatctaagctgtgagaaattattatctaagcttagataaatacttatcaaagcttagataatttaaaatacacgtagaaaaatcatactatatacggtttcccacgaaagggaaacgtgccaaaataatatcggaacctctgcaagggtctatcctgacatcagaaacaaggatatggcttattgattatctgtttacaaaaaatagttttgcagaagtcgcaaagcattattttcgatacttacactattaaggagaatacaaaaacatacagaaaaaggattgcacaaacacgatgtgcaatcctttttctgtatgcttgatggagatta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 73 HP_score: -9.3 Tail_Score: -2.58579 Start: 276 End: 321 Full_Region: CACAGCTGTGAGAAA TATTTATCTAAGCTGTGAGAA ATTA TTATCTAAGCTTAGATAAATA CTTATCAAAGCTTAG ...................................................................................................................................................................................................................................................................................TATTTATCTAAGCTGTGAGAAATTATTATCTAAGCTTAGATAAATA.................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 86 HP_score: -9.3 Tail_Score: -3.87373 Start: 276 End: 321 Full_Region: ctaagctttgataag tatttatctaagcttagataa taat ttctcacagcttagataaata tttctcacagctgtg ...................................................................................................................................................................................................................................................................................tatttatctaagcttagataataatttctcacagcttagataaata.................................................................................................................................................................................................................................................................................................. TransTerm Strand: - Conf: 86 HP_score: -9.3 Tail_Score: -3.87869 Start: 298 End: 343 Full_Region: ttctacgtgtatttt aaattatctaagctttgataa gtat ttatctaagcttagataataa tttctcacagcttag .........................................................................................................................................................................................................................................................................................................aaattatctaagctttgataagtatttatctaagcttagataataa............................................................................................................................................................................................................................................................................ TransTerm Strand: - Conf: 100 HP_score: -15.4 Tail_Score: -3.01125 Start: 301 End: 340 Full_Region: tacgtgtattttaaa ttatctaagctttgataa gtat ttatctaagcttagataa taatttctcacagct ............................................................................................................................................................................................................................................................................................................ttatctaagctttgataagtatttatctaagcttagataa............................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -15.4 Tail_Score: -3.60296 Start: 301 End: 340 Full_Region: AGCTGTGAGAAATTA TTATCTAAGCTTAGATAA ATAC TTATCAAAGCTTAGATAA TTTAAAATACACGTA ............................................................................................................................................................................................................................................................................................................TTATCTAAGCTTAGATAAATACTTATCAAAGCTTAGATAA............................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -26.0 Tail_Score: -5.16133 Start: 547 End: 597 Full_Region: taatctccatcaag catacagaaaaaggattgcaca tcgtgtt tgtgcaatcctttttctgtatg tttttgtattctcct ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................catacagaaaaaggattgcacatcgtgtttgtgcaatcctttttctgtatg.............. Find igs database================================================ Query_seq: PI1305:PI1306|PI1305:PI1306:conserved hypothetical protein:dipeptidyl peptidase IV:->->:1219793..1220403 611 aagattttagagttttaattatcaactttttaggtttcgttatttttctttacaaagatacatatatagataataaattctcaaaagaagtattaatttaacaatcttttaacactaaaacatcttaaaaagaagccgaaaccaatgcaaaagaataatattccgaaacctttctgagcgttaaggactgacaaaagtacaggttctgaagatatttatacccattctaatactatttacgtgcgtgaaaattgaattatcacagctgtgagaaatatttatctaagctgtgagaaattattatctaagcttagataaatacttatcaaagcttagataatttaaaatacacgtagaaaaatcatactatatacggtttcccacgaaagggaaacgtgccaaaataatatcggaacctctgcaagggtctatcctgacatcagaaacaaggatatggcttattgattatctgtttacaaaaaatagttttgcagaagtcgcaaagcattattttcgatacttacactattaaggagaatacaaaaacatacagaaaaaggattgcacaaacacgatgtgcaatcctttttctgtatgcttgatggagatta Intra-Species Hit: Count: 1 Min: 1 Max: 611 Len: 611 Subject: pint_PI1305_PI1306|conserved hypothetical protein:dipeptidyl peptidase IV|POSITIVE:POSITIVE|[1219793,1220403]|611 HSP 1 e-value: 0.0 bit: 1211.0 Len: 611 Query Start:1 Query End:611 Subject Strand: POSITIVE Subject Start: 1 Subject End: 611 aagattttagagttttaattatcaactttttaggtttcgttatttttctttacaaagatacatatatagataataaattctcaaaagaagtattaatttaacaatcttttaacactaaaacatcttaaaaagaagccgaaaccaatgcaaaagaataatattccgaaacctttctgagcgttaaggactgacaaaagtacaggttctgaagatatttatacccattctaatactatttacgtgcgtgaaaattgaattatcacagctgtgagaaatatttatctaagctgtgagaaattattatctaagcttagataaatacttatcaaagcttagataatttaaaatacacgtagaaaaatcatactatatacggtttcccacgaaagggaaacgtgccaaaataatatcggaacctctgcaagggtctatcctgacatcagaaacaaggatatggcttattgattatctgtttacaaaaaatagttttgcagaagtcgcaaagcattattttcgatacttacactattaaggagaatacaaaaacatacagaaaaaggattgcacaaacacgatgtgcaatcctttttctgtatgcttgatggagatta aagattttagagttttaattatcaactttttaggtttcgttatttttctttacaaagatacatatatagataataaattctcaaaagaagtattaatttaacaatcttttaacactaaaacatcttaaaaagaagccgaaaccaatgcaaaagaataatattccgaaacctttctgagcgttaaggactgacaaaagtacaggttctgaagatatttatacccattctaatactatttacgtgcgtgaaaattgaattatcacagctgtgagaaatatttatctaagctgtgagaaattattatctaagcttagataaatacttatcaaagcttagataatttaaaatacacgtagaaaaatcatactatatacggtttcccacgaaagggaaacgtgccaaaataatatcggaacctctgcaagggtctatcctgacatcagaaacaaggatatggcttattgattatctgtttacaaaaaatagttttgcagaagtcgcaaagcattattttcgatacttacactattaaggagaatacaaaaacatacagaaaaaggattgcacaaacacgatgtgcaatcctttttctgtatgcttgatggagatta Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAGAUUUUAGAGUUUUAAUUAUCAACUUUUUAGGUUUCGUUAUUUUUCUUUACAAAGAUACAUAUAUAGAUAAUAAAUUCUCAAAAGAAGUAUUAAUUUAACAAUCUUUUAACACUAAAACAUCUUAAAAAGAAGCCGAAACCAAUGCAAAAGAAUAAUAUUCCGAAACCUUUCUGAGCGUUAAGGACUGACAAAAGUACAGGUUCUGAAGAUAUUUAUACCCAUUCUAAUACUAUUUACGUGCGUGAAAAUUGAAUUAUCACAGCUGUGAGAAAUAUUUAUCUAAGCUGUGAGAAAUUAUUAUCUAAGCUUAGAUAAAUACUUAUCAAAGCUUAGAUAAUUUAAAAUACACGUAGAAAAAUCAUACUAUAUACGGUUUCCCACGAAAGGGAAACGUGCCAAAAUAAUAUCGGAACCUCUGCAAGGGUCUAUCCUGACAUCAGAAACAAGGAUAUGGCUUAUUGAUUAUCUGUUUACAAAAAAUAGUUUUGCAGAAGUCGCAAAGCAUUAUUUUCGAUACUUACACUAUUAAGGAGAAUACAAAAACAUACAGAAAAAGGAUUGCACAAACACGAUGUGCAAUCCUUUUUCUGUAUGCUUGAUGGAGAUUA .........(((..((.((((((..((....)).....((.((((((......)))))))).......)))))).))..))).....(((((............((((((.................))))))...(((((..(((((........((((..(((...(((((((((..((((.(((..(((....(((.(((((((((.(.(((((..................((((((((..(.....((((((((((..((((.(((.((.((((((((((((((...(((........))).)))))))))))))).)).))).))))..)))))))))).)..))))))))..............((((.((((((......))))))))))...))))).).))))))))).)))....)))..))))))).)))))...))))...)))..))))((((.(((((..((........))...))))))))).....)))))..))))).)))))...((((((((.............((((((((((((((((((((((.......))))))))))))))))))))))))))))))...... (-165.84) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUCUCCAUCAAGCAUACAGAAAAAGGAUUGCACAUCGUGUUUGUGCAAUCCUUUUUCUGUAUGUUUUUGUAUUCUCCUUAAUAGUGUAAGUAUCGAAAAUAAUGCUUUGCGACUUCUGCAAAACUAUUUUUUGUAAACAGAUAAUCAAUAAGCCAUAUCCUUGUUUCUGAUGUCAGGAUAGACCCUUGCAGAGGUUCCGAUAUUAUUUUGGCACGUUUCCCUUUCGUGGGAAACCGUAUAUAGUAUGAUUUUUCUACGUGUAUUUUAAAUUAUCUAAGCUUUGAUAAGUAUUUAUCUAAGCUUAGAUAAUAAUUUCUCACAGCUUAGAUAAAUAUUUCUCACAGCUGUGAUAAUUCAAUUUUCACGCACGUAAAUAGUAUUAGAAUGGGUAUAAAUAUCUUCAGAACCUGUACUUUUGUCAGUCCUUAACGCUCAGAAAGGUUUCGGAAUAUUAUUCUUUUGCAUUGGUUUCGGCUUCUUUUUAAGAUGUUUUAGUGUUAAAAGAUUGUUAAAUUAAUACUUCUUUUGAGAAUUUAUUAUCUAUAUAUGUAUCUUUGUAAAGAAAAAUAACGAAACCUAAAAAGUUGAUAAUUAAAACUCUAAAAUCUU ...........(((((((((((((((((((((((((.......)))))))))))))))))))))))))...............(((.((..((..((((((....(.((((((.....)))))).)...))))))...)).(((.((((((...............(((((((((.(((((.(((....(.(.((((((.((...(((((..((..(((((((......)))))))(((...((((((.((((.....((((....((.(((((((..((((.(((.(((((((((((((((((.(((........)))...))))))))))))))))).))).))))..))))))).))....)))).....)))).))))))..))).))..)))))...)).)))))).).)....))).)))))..))).))))))((((((((...((((.((((((.(((..(((....((.........(((((......(.((((((((.(((((...)))))..)))))))).)......)))))......)))))..))))))))).)))).)))))))).....)))))).)))...)).)))....... (-165.06) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 442 340 300 185 145 pint:PI1716|5end_hypothetical_protein_1631588..1631818_POSITIVE 364 335 300 231 196 pint:PI1715|5end_conserved_hypothetical_protein;_possible_DNA-binding_protein,_histone-like_family_1631639..1631869_POSITIVE 340 460 411 86 31 pint:PI0263|5end_conjugative_transposon_protein,_TraM_255256..255486_POSITIVE 327 589 555 143 109 pint:PI1305|5end_conserved_hypothetical_protein_1216854..1217084_POSITIVE 310 203 161 39 7 pint:PI0268|5end_lysozyme-related_protein_259198..259428_POSITIVE 302 458 412 168 131 pint:PI1448|5end_hypothetical_protein_1371579..1371809_POSITIVE 298 204 161 110 74 pint:PI1322|5end_nucleoside_permease_1240324..1240554_POSITIVE 294 516 485 209 179 pint:PI0740|5end_hypothetical_protein_672112..672342_POSITIVE 294 211 171 90 57 pint:PI0223|5end_topoisomerase_IA_218377..218607_POSITIVE 293 429 381 80 34 pint:PI0545|5end_sugar_kinase_496411..496641_POSITIVE 289 434 397 45 14 pint:PI2160|5end_hypothetical_protein_2107270..2107500_POSITIVE 289 200 151 77 15 pint:PI0008|5end_exoribonuclease_II_(ribonuclease_II)_7238..7468_POSITIVE 282 430 384 220 163 pint:PI0651|5end_HD_superfamily_hydrolase_592270..592500_POSITIVE 282 607 561 201 163 pint:PI0354|5end_hypothetical_protein_325886..326116_POSITIVE 281 404 364 72 36 pint:PI1640|5end_hypothetical_protein_1558062..1558292_POSITIVE 273 458 411 103 49 pint:PI1908|5end_transcriptional_regulator,_AraC_family_1852261..1852491_POSITIVE 272 454 411 231 185 pint:PI2117|5end_fumarate_reductase/succinate_dehydrogenase_flavoprotein_subunit,_C-terminal_2066017..2066247_POSITIVE 272 171 131 119 78 pint:PI0900|5end_signal_recognition_particle_protein_829663..829893_POSITIVE 270 430 384 74 28 pint:PI1102|5end_conserved_hypothetical_protein_1025316..1025546_POSITIVE 269 459 411 211 161 pint:PI1547|5end_hypothetical_protein_1465808..1466038_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 377 460 411 89 39 pint:PI0938|3end_hypothetical_protein_869541..869691_POSITIVE 377 460 411 66 16 pint:PI0937|3end_hypothetical_protein_869518..869668_POSITIVE 327 589 555 89 55 pint:PI1304|3end_hypothetical_protein_1216880..1217030_POSITIVE 310 203 161 52 20 pint:PI0267|3end_conjugative_transposon_protein,_TraQ_259291..259441_POSITIVE 298 204 161 107 71 pint:PI1321|3end_conserved_hypothetical_protein_1240401..1240551_POSITIVE 294 211 171 75 42 pint:PI0222|3end_conserved_hypothetical_protein_218442..218592_POSITIVE 289 434 397 66 35 pint:PI2159|3end_immunoreactive_84_kDa_antigen_PG93_2107371..2107521_POSITIVE 284 186 141 71 26 pint:PI1499|3end_hypothetical_protein_1420180..1420330_POSITIVE 281 404 364 63 27 pint:PI1639|3end_conserved_hypothetical_protein_1558133..1558283_POSITIVE 279 200 158 59 8 pint:PI0007|3end_hypothetical_protein_7300..7450_POSITIVE 272 171 131 75 34 pint:PI0899|3end_methylenetetrahydrofolate_dehydrogenase/methenyltetrahydrofolate_cyclohydrolase_829699..829849_POSITIVE 264 591 552 67 27 pint:PI0048|3end_conserved_hypothetical_protein_48494..48644_POSITIVE 257 457 411 94 33 pint:PI0671|3end_hypothetical_protein_611807..611957_POSITIVE 253 447 409 150 116 pint:PI1626|3end_hypothetical_protein_1550522..1550672_POSITIVE 253 396 365 60 32 pint:PI0077|3end_hypothetical_protein_77619..77769_POSITIVE 251 443 403 131 90 pint:PI0713|3end_hypothetical_protein_650529..650679_POSITIVE 249 607 562 87 39 pint:PI0548|3end_possible_acetylxylan_esterase_500571..500721_POSITIVE 248 428 382 82 35 pint:PI1955|3end_N_utilization_substance_protein_A_1913058..1913208_POSITIVE 248 607 565 118 62 pint:PI1733|3end_hypothetical_protein_1652437..1652587_POSITIVE 245 428 386 56 7 pint:PI1365|3end_conserved_hypothetical_protein;_probable_transmembrane_protein_1285675..1285825_POSITIVE