Origin IGS: aaatagttaagctttagataagttactgttaagttgtttcttctgcaaatataaatatttttttttacaaagtcaattattaatcaaacttttttctaaaatatacaaaatcattatataaaaagatgcaaaataaggcatttagatataacaacaattagttttttagtaattgaaaagaaataaaagaagctttattttagaaggatttgaatttctttttcttgcttaagtaattgtcgaaaataaccgtagctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttacagcttgattatcttcttttcgttcataaagcagactgtccccattaactttcta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tagaaagttaatggggacagtctgctttatgaacgaaaagaagataatcaagctgtaaatatttttcacaaacataactattgcataacttgttcgttatcagtgtattgcaaaacctacgcttttgcgttccaaaagcggctgttttgtacggtaaaagcgtaggttttgcatcgcaaaagaaccgctttcgcaacgttaaagcgcagttatcactttttaacggaattatatttacaaagctacggttattttcgacaattacttaagcaagaaaaagaaattcaaatccttctaaaataaagcttcttttatttcttttcaattactaaaaaactaattgttgttatatctaaatgccttattttgcatctttttatataatgattttgtatattttagaaaaaagtttgattaataattgactttgtaaaaaaaaatatttatatttgcagaagaaacaacttaacagtaacttatctaaagcttaactattt Mask Tandem Repeat Region ================================================ aaatagttaagctttagataagttactgttaagttgtttcttctgcaaatataaatatttttttttacaaagtcaattattaatcaaacttttttctaaaatatacaaaatcattatataaaaagatgcaaaataaggcatttagatataacaacaattagttttttagtaattgaaaagaaataaaagaagctttattttagaaggatttgaatttctttttcttgcttaagtaattgtcgaaaataaccgtagctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttacagcttgattatcttcttttcgttcataaagcagactgtccccattaactttcta Find is-nt database================================================ Query_seq: PI1271:PI1272|PI1271:PI1272:transcriptional regulator, AraC/XylS family:possible transcriptional regulator:->->:1191345..1191841 497 aaatagttaagctttagataagttactgttaagttgtttcttctgcaaatataaatatttttttttacaaagtcaattattaatcaaacttttttctaaaatatacaaaatcattatataaaaagatgcaaaataaggcatttagatataacaacaattagttttttagtaattgaaaagaaataaaagaagctttattttagaaggatttgaatttctttttcttgcttaagtaattgtcgaaaataaccgtagctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttacagcttgattatcttcttttcgttcataaagcagactgtccccattaactttcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1271:PI1272|PI1271:PI1272:transcriptional regulator, AraC/XylS family:possible transcriptional regulator:->->:1191345..1191841 497 aaatagttaagctttagataagttactgttaagttgtttcttctgcaaatataaatatttttttttacaaagtcaattattaatcaaacttttttctaaaatatacaaaatcattatataaaaagatgcaaaataaggcatttagatataacaacaattagttttttagtaattgaaaagaaataaaagaagctttattttagaaggatttgaatttctttttcttgcttaagtaattgtcgaaaataaccgtagctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttacagcttgattatcttcttttcgttcataaagcagactgtccccattaactttcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1271:PI1272|PI1271:PI1272:transcriptional regulator, AraC/XylS family:possible transcriptional regulator:->->:1191345..1191841 497 aaatagttaagctttagataagttactgttaagttgtttcttctgcaaatataaatatttttttttacaaagtcaattattaatcaaacttttttctaaaatatacaaaatcattatataaaaagatgcaaaataaggcatttagatataacaacaattagttttttagtaattgaaaagaaataaaagaagctttattttagaaggatttgaatttctttttcttgcttaagtaattgtcgaaaataaccgtagctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttacagcttgattatcttcttttcgttcataaagcagactgtccccattaactttcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 aaatagttaagctttagataagttactgttaagttgtttcttctgcaaatataaatatttttttttacaaagtcaattattaatcaaacttttttctaaaatatacaaaatcattatataaaaagatgcaaaataaggcatttagatataacaacaattagttttttagtaattgaaaagaaataaaagaagctttattttagaaggatttgaatttctttttcttgcttaagtaattgtcgaaaataaccgtagctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttacagcttgattatcttcttttcgttcataaagcagactgtccccattaactttcta Predict ORF larger than 30AA ================================================ Protein_Len: 31 Strand: + Start: 26 End: 118 ......................... M L S C F F C K Y K Y F F L Q S Q L L I K L F S K I Y K I I I ........................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 30 Strand: + Start: 289 End: 378 ................................................................................................................................................................................................................................................................................................ M R F N V A K A V L L R C K T Y A F T V Q N S R F W N A K A ....................................................................................................................... Protein_Len: 60 Strand: + Start: 236 End: 487 ........................................................................................................................................................................................................................................... M V E N N R S F V N I I P L K S D N C A L T L R K R F F C D A K P T L L P Y K T A A F G T Q K R R F C N T L I T N K L C .......... Protein_Len: 47 Strand: - Start: 336 End: 476 ............................................................................................................................................................................................................................................................................................................................................... A K V T C F L R K Q F A F A Y T K C Y V S L S C T I C Y N H K H F I N V A Q N D E K R E Y L M ..................... Protein_Len: 60 Strand: - Start: 232 End: 417 ....................................................................................................................................................................................................................................... T S F L R L K T F I I G N F L S L Q A K V N R F R N K Q S A F G V S K G Y L V A A K P V C F R L N Q L V S I V F L N H M ................................................................................ Protein_Len: 44 Strand: - Start: 198 End: 329 ..................................................................................................................................................................................................... K L L I Q I E K E Q K L L Q R F Y G Y S Q L Y L E T L F H Y S R K L T A F A T R K R H M ........................................................................................................................................................................ aaatagttaagctttagataagttactgttaagttgtttcttctgcaaatataaatatttttttttacaaagtcaattattaatcaaacttttttctaaaatatacaaaatcattatataaaaagatgcaaaataaggcatttagatataacaacaattagttttttagtaattgaaaagaaataaaagaagctttattttagaaggatttgaatttctttttcttgcttaagtaattgtcgaaaataaccgtagctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttacagcttgattatcttcttttcgttcataaagcagactgtccccattaactttcta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 83 Start: 48 End: 77 ...............................................ATTGACTTTGTAAAAAAAAATATTTATATT.................................................................................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: - Score: 83 Start: 113 End: 142 ................................................................................................................AATGCCTTATTTTGCATCTTTTTATATAAT................................................................................................................................................................................................................................................................................................................................................................... PromScan Matrix: RpoD-17 Strand: + Score: 81 Start: 172 End: 201 ...........................................................................................................................................................................ATTGAAAAGAAATAAAAGAAGCTTTATTTT........................................................................................................................................................................................................................................................................................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ aaatagttaagctttagataagttactgttaagttgtttcttctgcaaatataaatatttttttttacaaagtcaattattaatcaaacttttttctaaaatatacaaaatcattatataaaaagatgcaaaataaggcatttagatataacaacaattagttttttagtaattgaaaagaaataaaagaagctttattttagaaggatttgaatttctttttcttgcttaagtaattgtcgaaaataaccgtagctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttacagcttgattatcttcttttcgttcataaagcagactgtccccattaactttcta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 88 HP_score: -9.3 Tail_Score: -4.18018 Start: 332 End: 382 Full_Region: cagtgtattgcaaaa cctacgcttttgcgttccaaaag cgg ctgttttgtacggtaaaagcgtagg ttttgcatcgcaaaa ...........................................................................................................................................................................................................................................................................................................................................cctacgcttttgcgttccaaaagcggctgttttgtacggtaaaagcgtagg................................................................................................................... TransTerm Strand: + Conf: 78 HP_score: -9.8 Tail_Score: -2.75577 Start: 358 End: 378 Full_Region: ACCGTACAAAACAGC CGCTTTTG GAACG CAAAAGCG TAGGTTTTGCAATAC .....................................................................................................................................................................................................................................................................................................................................................................CGCTTTTGGAACGCAAAAGCG....................................................................................................................... Find igs database================================================ Query_seq: PI1271:PI1272|PI1271:PI1272:transcriptional regulator, AraC/XylS family:possible transcriptional regulator:->->:1191345..1191841 497 aaatagttaagctttagataagttactgttaagttgtttcttctgcaaatataaatatttttttttacaaagtcaattattaatcaaacttttttctaaaatatacaaaatcattatataaaaagatgcaaaataaggcatttagatataacaacaattagttttttagtaattgaaaagaaataaaagaagctttattttagaaggatttgaatttctttttcttgcttaagtaattgtcgaaaataaccgtagctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttacagcttgattatcttcttttcgttcataaagcagactgtccccattaactttcta Intra-Species Hit: Count: 45 Min: 1 Max: 497 Len: 497 Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 0.0 bit: 932.0 Len: 497 Query Start:1 Query End:497 Subject Strand: POSITIVE Subject Start: 1 Subject End: 497 aaatagttaagctttagataagttactgttaagttgtttcttctgcaaatataaatannnnnnnnnacaaagtcaattattaatcaaacttttttctaaaatatacaaaatcattatataaaaagatgcaaaataaggcatttagatataacaacaattagttttttagtaattgaaaagaaataaaagaagctttattttagaaggatttgaatttctttttcttgcttaagtaattgtcgaaaataaccgtagctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttacagcttgattatcttcttttcgttcataaagcagactgtccccattaactttcta aaatagttaagctttagataagttactgttaagttgtttcttctgcaaatataaatatttttttttacaaagtcaattattaatcaaacttttttctaaaatatacaaaatcattatataaaaagatgcaaaataaggcatttagatataacaacaattagttttttagtaattgaaaagaaataaaagaagctttattttagaaggatttgaatttctttttcttgcttaagtaattgtcgaaaataaccgtagctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttacagcttgattatcttcttttcgttcataaagcagactgtccccattaactttcta Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 9.0E-54 bit: 212.0 Len: 143 Query Start:257 Query End:399 Subject Strand: POSITIVE Subject Start: 51 Subject End: 193 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgat.................................................................................................. ................................................................................................................................................................................................................................................................tttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgat.................................................................................................. Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 3.0E-47 bit: 190.0 Len: 120 Query Start:256 Query End:375 Subject Strand: POSITIVE Subject Start: 148 Subject End: 267 ...............................................................................................................................................................................................................................................................ctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa.......................................................................................................................... ...............................................................................................................................................................................................................................................................ctttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaa.......................................................................................................................... Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 3.0E-47 bit: 190.0 Len: 120 Query Start:256 Query End:375 Subject Strand: POSITIVE Subject Start: 199 Subject End: 318 ...............................................................................................................................................................................................................................................................ctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa.......................................................................................................................... ...............................................................................................................................................................................................................................................................ctttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaa.......................................................................................................................... Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 123 Query Start:253 Query End:375 Subject Strand: POSITIVE Subject Start: 306 Subject End: 428 ............................................................................................................................................................................................................................................................tagctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa.......................................................................................................................... ............................................................................................................................................................................................................................................................tagctttgtaaagataatttctttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaa.......................................................................................................................... Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 5.0E-46 bit: 186.0 Len: 170 Query Start:275 Query End:444 Subject Strand: POSITIVE Subject Start: 120 Subject End: 289 ..................................................................................................................................................................................................................................................................................ttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttaca..................................................... ..................................................................................................................................................................................................................................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttaca..................................................... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 2.0E-45 bit: 184.0 Len: 217 Query Start:256 Query End:472 Subject Strand: POSITIVE Subject Start: 479 Subject End: 695 ...............................................................................................................................................................................................................................................................ctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttacagcttgattatcttcttttcgttcataaa......................... ...............................................................................................................................................................................................................................................................ctttgtaaagataattctgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatgcgttgatacataataagttatataacagttatacttgcgaaaaatatttacatatttattatcttcttttcactcataaa......................... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 2.0E-45 bit: 184.0 Len: 149 Query Start:257 Query End:405 Subject Strand: NEGATIVE Subject Start: 78 Subject End: 226 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaa............................................................................................ ................................................................................................................................................................................................................................................................tttgtaaagataattctgttaaaaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgcaatgcattgataacgaa............................................................................................ Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 3.0E-44 bit: 180.0 Len: 119 Query Start:257 Query End:375 Subject Strand: POSITIVE Subject Start: 112 Subject End: 230 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa.......................................................................................................................... ................................................................................................................................................................................................................................................................tttgtaaagataattctgttaaaaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaa.......................................................................................................................... HSP 2 e-value: 5.0E-6 bit: 54.0 Len: 39 Query Start:431 Query End:469 Subject Strand: POSITIVE Subject Start: 286 Subject End: 324 ..............................................................................................................................................................................................................................................................................................................................................................................................................................................gaaaaatatttacagcttgattatcttcttttcgttcat............................ ..............................................................................................................................................................................................................................................................................................................................................................................................................................................gaaaaatatttacacctttattaccttcttttcgttcat............................ Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 3.0E-44 bit: 180.0 Len: 214 Query Start:257 Query End:470 Subject Strand: NEGATIVE Subject Start: 613 Subject End: 826 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttaca-gcttgattatcttcttttcgttcata........................... ................................................................................................................................................................................................................................................................tttgtaaaaataattctgttaaaaagtgataactgtactttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatacaaaacaataggttttgtaatgagctgatagatagtgaattatgcaacagttatgtttgtgaaaaatatttacacgcat-attatcttcttttcgttcata........................... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 3.0E-44 bit: 180.0 Len: 147 Query Start:255 Query End:401 Subject Strand: POSITIVE Subject Start: 58 Subject End: 204 ..............................................................................................................................................................................................................................................................gctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataa................................................................................................ ..............................................................................................................................................................................................................................................................gctttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataa................................................................................................ Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 5.0E-43 bit: 176.0 Len: 137 Query Start:257 Query End:393 Subject Strand: NEGATIVE Subject Start: 88 Subject End: 224 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatac........................................................................................................ ................................................................................................................................................................................................................................................................tttgtaaagataattctgttaaaaactgataactgcgctttgacgttgcgaaagcggctcttttacgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgtaatac........................................................................................................ Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 2.0E-42 bit: 174.0 Len: 144 Query Start:256 Query End:399 Subject Strand: POSITIVE Subject Start: 214 Subject End: 357 ...............................................................................................................................................................................................................................................................ctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgat.................................................................................................. ...............................................................................................................................................................................................................................................................ctttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgat.................................................................................................. Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 7.0E-42 bit: 172.0 Len: 119 Query Start:257 Query End:375 Subject Strand: NEGATIVE Subject Start: 163 Subject End: 281 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa.......................................................................................................................... ................................................................................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgtaaaa.......................................................................................................................... Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 7.0E-42 bit: 172.0 Len: 119 Query Start:257 Query End:375 Subject Strand: NEGATIVE Subject Start: 122 Subject End: 240 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa.......................................................................................................................... ................................................................................................................................................................................................................................................................tttgtaaaaataattccgttaaaaagcgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaa.......................................................................................................................... Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 3.0E-41 bit: 170.0 Len: 118 Query Start:258 Query End:375 Subject Strand: POSITIVE Subject Start: 170 Subject End: 287 .................................................................................................................................................................................................................................................................ttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa.......................................................................................................................... .................................................................................................................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaa.......................................................................................................................... Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 3.0E-41 bit: 170.0 Len: 190 Query Start:257 Query End:446 Subject Strand: POSITIVE Subject Start: 115 Subject End: 304 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttacagc................................................... ................................................................................................................................................................................................................................................................tttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttacagc................................................... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 2.0E-39 bit: 165.0 Len: 215 Query Start:257 Query End:471 Subject Strand: POSITIVE Subject Start: 167 Subject End: 381 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttacagcttgattatcttcttttcgttcataa.......................... ................................................................................................................................................................................................................................................................tttgtaaagataattctcttaaaaattgataactgcgttttgacattgcgaaagcggctgttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgaatgccaaatggttaagcgatagttttatctgtgaaaaatatttacatctttattaccttcttttcgtgcataa.......................... Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 7.0E-39 bit: 163.0 Len: 134 Query Start:257 Query End:390 Subject Strand: NEGATIVE Subject Start: 301 Subject End: 434 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaa........................................................................................................... ................................................................................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttgacgttgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaa........................................................................................................... Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 3.0E-38 bit: 161.0 Len: 145 Query Start:255 Query End:399 Subject Strand: NEGATIVE Subject Start: 242 Subject End: 386 ..............................................................................................................................................................................................................................................................gctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgat.................................................................................................. ..............................................................................................................................................................................................................................................................gctttgtaaagataattctcttaaaaagtgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccacttttggaacgcaaaacaataggttttgtaacacactgat.................................................................................................. Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 2.0E-36 bit: 155.0 Len: 138 Query Start:257 Query End:394 Subject Strand: POSITIVE Subject Start: 147 Subject End: 284 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaataca....................................................................................................... ................................................................................................................................................................................................................................................................tttgtaaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaataca....................................................................................................... Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 2.0E-36 bit: 155.0 Len: 142 Query Start:257 Query End:398 Subject Strand: NEGATIVE Subject Start: 86 Subject End: 227 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactga................................................................................................... ................................................................................................................................................................................................................................................................tttgtaaagataattctgttaaaaactgataactgcgttttgacattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgcaatacgctga................................................................................................... Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 3.0E-32 bit: 141.0 Len: 119 Query Start:257 Query End:375 Subject Strand: POSITIVE Subject Start: 114 Subject End: 232 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa.......................................................................................................................... ................................................................................................................................................................................................................................................................tttgtaaagataatttctttgaaaaatggtaatttcgatttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaa.......................................................................................................................... Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 3.0E-32 bit: 141.0 Len: 147 Query Start:299 Query End:445 Subject Strand: POSITIVE Subject Start: 112 Subject End: 258 ..........................................................................................................................................................................................................................................................................................................acgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttacag.................................................... ..........................................................................................................................................................................................................................................................................................................acgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgataaagcagttacgcaatagctatgtttgcgaaaaatatttacag.................................................... Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 4.0E-31 bit: 137.0 Len: 109 Query Start:257 Query End:365 Subject Strand: POSITIVE Subject Start: 186 Subject End: 294 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttg.................................................................................................................................... ................................................................................................................................................................................................................................................................tttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttg.................................................................................................................................... Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 2.0E-27 bit: 125.0 Len: 119 Query Start:257 Query End:375 Subject Strand: POSITIVE Subject Start: 142 Subject End: 260 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa.......................................................................................................................... ................................................................................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaa.......................................................................................................................... Subject: pint_PI1117_PI1118|glycosyl transferase, family 2:glycosyl transferases, group 1|POSITIVE:POSITIVE|[1042340,1042635]|296 HSP 1 e-value: 6.0E-27 bit: 123.0 Len: 138 Query Start:307 Query End:444 Subject Strand: NEGATIVE Subject Start: 31 Subject End: 168 ..................................................................................................................................................................................................................................................................................................................aaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttaca..................................................... ..................................................................................................................................................................................................................................................................................................................aaagcggttgttttgcgatgcaaaacctacgcttttaccgtgtaaaacagccgcttttggaacgcgaaacaataggttttacaatgtcttgatagacaacaagttaagcaatagttacgcttgtgaaaaagatttaca..................................................... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 6.0E-27 bit: 123.0 Len: 190 Query Start:255 Query End:444 Subject Strand: NEGATIVE Subject Start: 121 Subject End: 310 ..............................................................................................................................................................................................................................................................gctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttaca..................................................... ..............................................................................................................................................................................................................................................................gctttgtaaagataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttacaaagcgttgataataaagcagttacgcaaaagatattgttgtgaaaaatatttaca..................................................... Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 1.0E-25 bit: 119.0 Len: 120 Query Start:256 Query End:375 Subject Strand: NEGATIVE Subject Start: 398 Subject End: 517 ...............................................................................................................................................................................................................................................................ctttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa.......................................................................................................................... ...............................................................................................................................................................................................................................................................ctttgtaaagataattctgatgaaaaatgataatttcgatttggcattgcgaaagcggctgttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaa.......................................................................................................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 6.0E-24 bit: 113.0 Len: 137 Query Start:257 Query End:393 Subject Strand: POSITIVE Subject Start: 92 Subject End: 228 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatac........................................................................................................ ................................................................................................................................................................................................................................................................tttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatac........................................................................................................ Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 9.0E-23 bit: 109.0 Len: 119 Query Start:257 Query End:375 Subject Strand: NEGATIVE Subject Start: 422 Subject End: 540 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa.......................................................................................................................... ................................................................................................................................................................................................................................................................tttgtaaagataattacattgaaaattgataatttcgttttgacgttgcgaaagcggctgttttgcgaggtaaaacctacgcttttgccgtgcaaaacagccgcttttggaatgcaaaa.......................................................................................................................... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 9.0E-23 bit: 109.0 Len: 119 Query Start:257 Query End:375 Subject Strand: POSITIVE Subject Start: 192 Subject End: 310 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa.......................................................................................................................... ................................................................................................................................................................................................................................................................tttgtaaagataatttcgttaaaaagtgataactgcactttgacgttgcgaaagcggctgttttacgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttaggacgcaaaa.......................................................................................................................... Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 9.0E-23 bit: 109.0 Len: 119 Query Start:257 Query End:375 Subject Strand: POSITIVE Subject Start: 11 Subject End: 129 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa.......................................................................................................................... ................................................................................................................................................................................................................................................................tttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaa.......................................................................................................................... Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 119 Query Start:257 Query End:375 Subject Strand: POSITIVE Subject Start: 227 Subject End: 345 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa.......................................................................................................................... ................................................................................................................................................................................................................................................................tttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaa.......................................................................................................................... Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 119 Query Start:257 Query End:375 Subject Strand: POSITIVE Subject Start: 202 Subject End: 319 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa.......................................................................................................................... ................................................................................................................................................................................................................................................................tttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggct-gtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaa.......................................................................................................................... Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 200 Query Start:258 Query End:457 Subject Strand: POSITIVE Subject Start: 113 Subject End: 312 .................................................................................................................................................................................................................................................................ttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttacagcttgattatctt........................................ .................................................................................................................................................................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagctttattgtctt........................................ Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 118 Query Start:274 Query End:391 Subject Strand: NEGATIVE Subject Start: 342 Subject End: 459 .................................................................................................................................................................................................................................................................................gttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaat.......................................................................................................... .................................................................................................................................................................................................................................................................................gttaaaaagtgataactgcgctttgacattgcgaaagcgtaggttttgcgatgcaaaagcgccacttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgcaat.......................................................................................................... Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 186 Query Start:259 Query End:444 Subject Strand: POSITIVE Subject Start: 190 Subject End: 375 ..................................................................................................................................................................................................................................................................tgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttaca..................................................... ..................................................................................................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttaca..................................................... Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 9.0E-17 bit: 89.7 Len: 217 Query Start:257 Query End:473 Subject Strand: POSITIVE Subject Start: 145 Subject End: 361 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttacagcttgattatcttcttttcgttcataaag........................ ................................................................................................................................................................................................................................................................tttgtaaagataattcgttgaaaaaatgataatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgcaaagtcttgatagtgagatagttatgcaatggttacgcttgtgaaaaatatttacacttttattatcttcttttcgttcataaag........................ Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 3.0E-13 bit: 77.8 Len: 119 Query Start:257 Query End:375 Subject Strand: POSITIVE Subject Start: 80 Subject End: 198 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa.......................................................................................................................... ................................................................................................................................................................................................................................................................tttgtaaagataatttcgttgaaaagtggtaattgcgctttggcattgcgaaagcggctgttttgcgatgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaa.......................................................................................................................... HSP 2 e-value: 8.0E-11 bit: 69.9 Len: 47 Query Start:427 Query End:473 Subject Strand: POSITIVE Subject Start: 250 Subject End: 296 ..........................................................................................................................................................................................................................................................................................................................................................................................................................................ttgtgaaaaatatttacagcttgattatcttcttttcgttcataaag........................ ..........................................................................................................................................................................................................................................................................................................................................................................................................................................ttgtgaaaaatatttacagctttatagtcttcttttcgttcataaag........................ Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 1.0E-9 bit: 65.9 Len: 129 Query Start:317 Query End:445 Subject Strand: NEGATIVE Subject Start: 174 Subject End: 302 ............................................................................................................................................................................................................................................................................................................................ttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttacag.................................................... ............................................................................................................................................................................................................................................................................................................................ttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacacttttggaatgcaaaacaataggttttataatacactgacaagcaataggttacacaatagttgtgcttgtgaaaaatatttacag.................................................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 2.0E-8 bit: 61.9 Len: 119 Query Start:257 Query End:375 Subject Strand: NEGATIVE Subject Start: 202 Subject End: 320 ................................................................................................................................................................................................................................................................tttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa.......................................................................................................................... ................................................................................................................................................................................................................................................................tttgtaaagataattcccttaaaaaaggataactgcgctttggcattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaa.......................................................................................................................... Subject: pint_PI1324_PI1325|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1243086,1243554]|469 HSP 1 e-value: 8.0E-8 bit: 60.0 Len: 38 Query Start:409 Query End:446 Subject Strand: NEGATIVE Subject Start: 202 Subject End: 239 ........................................................................................................................................................................................................................................................................................................................................................................................................................gttatgcaatagttatgtttgtgaaaaatatttacagc................................................... ........................................................................................................................................................................................................................................................................................................................................................................................................................gttaggcaacagttatgtttgtgaaaaatatttacagc................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 40 Query Start:258 Query End:297 Subject Strand: NEGATIVE Subject Start: 351 Subject End: 390 .................................................................................................................................................................................................................................................................ttgtaaatataattccgttaaaaagtgataactgcgcttt........................................................................................................................................................................................................ .................................................................................................................................................................................................................................................................ttgtaaaaataattctgttaaaaagtgataactgcacttt........................................................................................................................................................................................................ Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 5.0E-6 bit: 54.0 Len: 143 Query Start:302 Query End:444 Subject Strand: NEGATIVE Subject Start: 49 Subject End: 191 .............................................................................................................................................................................................................................................................................................................ttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttaca..................................................... .............................................................................................................................................................................................................................................................................................................ttgcgaaagcggctgttttgcaacgcaaaacagccgcttttgccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgcaatgtgttgataacgagttagttatgtaatatctttgcttgtgaaaaatatttaca..................................................... Subject: pint_PI0195_PI0196|epimerase/reductase:hypothetical protein|POSITIVE:POSITIVE|[188263,188574]|312 HSP 1 e-value: 5.0E-6 bit: 54.0 Len: 103 Query Start:302 Query End:404 Subject Strand: POSITIVE Subject Start: 191 Subject End: 293 .............................................................................................................................................................................................................................................................................................................ttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacga............................................................................................. .............................................................................................................................................................................................................................................................................................................ttgcgaaagcggctgttttgcatcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatacgctggtaacga............................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AAAUAGUUAAGCUUUAGAUAAGUUACUGUUAAGUUGUUUCUUCUGCAAAUAUAAAUAUUUUUUUUUACAAAGUCAAUUAUUAAUCAAACUUUUUUCUAAAAUAUACAAAAUCAUUAUAUAAAAAGAUGCAAAAUAAGGCAUUUAGAUAUAACAACAAUUAGUUUUUUAGUAAUUGAAAAGAAAUAAAAGAAGCUUUAUUUUAGAAGGAUUUGAAUUUCUUUUUCUUGCUUAAGUAAUUGUCGAAAAUAACCGUAGCUUUGUAAAUAUAAUUCCGUUAAAAAGUGAUAACUGCGCUUUAACGUUGCGAAAGCGGUUCUUUUGCGAUGCAAAACCUACGCUUUUACCGUACAAAACAGCCGCUUUUGGAACGCAAAAGCGUAGGUUUUGCAAUACACUGAUAACGAACAAGUUAUGCAAUAGUUAUGUUUGUGAAAAAUAUUUACAGCUUGAUUAUCUUCUUUUCGUUCAUAAAGCAGACUGUCCCCAUUAACUUUCUA ..((((((..((((((((.(((.....((((((((((((.(((.((((((((((.((((....((((((((((..........(((((..(((((((((((((..........((((((....((((((........))))))..))))))...((((((.(.....).))))))....................))))))))))))))))))......(((((((((....)))).....)))))........)))))))))).((((((.(((((...((((.......(((.......((((....)))).......))).((((((((((((((((((..(((.(((((.......)))))..))).))))))))))))))))))...))))..)))))....))))))..)))).))))))))))))).)).....))))))))))......))).....)).)))))).))))))................ (-112.54) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGAAAGUUAAUGGGGACAGUCUGCUUUAUGAACGAAAAGAAGAUAAUCAAGCUGUAAAUAUUUUUCACAAACAUAACUAUUGCAUAACUUGUUCGUUAUCAGUGUAUUGCAAAACCUACGCUUUUGCGUUCCAAAAGCGGCUGUUUUGUACGGUAAAAGCGUAGGUUUUGCAUCGCAAAAGAACCGCUUUCGCAACGUUAAAGCGCAGUUAUCACUUUUUAACGGAAUUAUAUUUACAAAGCUACGGUUAUUUUCGACAAUUACUUAAGCAAGAAAAAGAAAUUCAAAUCCUUCUAAAAUAAAGCUUCUUUUAUUUCUUUUCAAUUACUAAAAAACUAAUUGUUGUUAUAUCUAAAUGCCUUAUUUUGCAUCUUUUUAUAUAAUGAUUUUGUAUAUUUUAGAAAAAAGUUUGAUUAAUAAUUGACUUUGUAAAAAAAAAUAUUUAUAUUUGCAGAAGAAACAACUUAACAGUAACUUAUCUAAAGCUUAACUAUUU ((((((((((.((....)).(((((..((((((......((((((((((.((((((((((((..(((..........((.((((.((((......)))).........((((((((((((((((((((((....(((((....)))))..)).))))))))))))))))))))..)))).))...((((((.((...)).))))))..((((........)))).)))..))))))))..))))..))))))))))..((((((.((((((..(((((.(((((.......(((........)))........)))))))))).....((((((.....(..((..((((((..((((((........))))..))..))))))..))..).....))))))......))))))....))))))..................))))))...)))))................)))))).)))).............. (-111.86) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 895 370 321 55 6 pint:PI0061|5end_hypothetical_protein_60500..60730_POSITIVE 895 370 321 55 6 pint:PI0004|5end_hypothetical_protein_6199..6429_POSITIVE 892 360 311 73 24 pint:PI2002|5end_hypothetical_protein_1960662..1960892_POSITIVE 892 360 311 61 12 pint:PI1129|5end_hypothetical_protein_1055377..1055607_POSITIVE 888 340 291 214 165 pint:PI2003|5end_hypothetical_protein_1960823..1961053_POSITIVE 882 340 291 184 135 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 871 370 321 83 34 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 853 340 291 53 4 pint:PI1601|5end_hypothetical_protein_1530282..1530512_POSITIVE 835 368 321 81 34 pint:PI1346|5end_hypothetical_protein_1260814..1261044_POSITIVE 828 360 311 61 12 pint:PI1866|5end_hypothetical_protein_1811693..1811923_POSITIVE 820 360 311 61 12 pint:PI2144|5end_hypothetical_protein_2091954..2092184_POSITIVE 816 360 311 73 24 pint:PI1829|5end_hypothetical_protein_1769255..1769485_POSITIVE 813 340 291 53 4 pint:PI1694|5end_hypothetical_protein_1609717..1609947_POSITIVE 811 368 321 207 160 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 806 368 321 89 42 pint:PI1168|5end_hypothetical_protein_1089696..1089926_POSITIVE 806 368 321 81 34 pint:PI1167|5end_hypothetical_protein_1089688..1089918_POSITIVE 803 360 312 100 52 pint:PI1604|5end_hypothetical_protein_1534017..1534247_POSITIVE 799 370 321 225 176 pint:PI1486|5end_alginate_O-acetylation_protein_1405507..1405737_POSITIVE 782 368 321 81 34 pint:PI1567|5end_hypothetical_protein_1489229..1489459_POSITIVE 780 368 321 130 83 pint:PI0055|5end_hypothetical_protein_54815..55045_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 906 340 291 95 46 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 892 360 311 56 7 pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE 853 340 291 145 96 pint:PI1601|3end_hypothetical_protein_1530454..1530604_POSITIVE 851 350 301 145 96 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 840 370 321 125 76 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 823 350 301 119 70 pint:PI1356|3end_hypothetical_protein_1273340..1273490_POSITIVE 823 350 301 145 93 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 804 350 301 145 94 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 801 350 301 149 100 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 780 368 321 64 17 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 754 350 301 145 94 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 751 350 301 145 94 pint:PI0670|3end_hypothetical_protein_611280..611430_POSITIVE 731 340 291 135 86 pint:PI0004|3end_hypothetical_protein_6389..6539_POSITIVE 725 340 291 145 96 pint:PI1076|3end_hypothetical_protein_999065..999215_POSITIVE 712 375 333 43 1 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 707 326 281 121 76 pint:PI0200|3end_hypothetical_protein_191735..191885_POSITIVE 705 390 341 52 3 pint:PI0669|3end_hypothetical_protein_611147..611297_POSITIVE 702 330 281 125 76 pint:PI0158|3end_hypothetical_protein_151298..151448_POSITIVE 637 316 275 151 110 pint:PI0104|3end_hypothetical_protein_99346..99496_POSITIVE 636 375 333 43 1 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE