Origin IGS: taatacccttttgctttcggtgtctatgtttacgcattgacaaaactgccctgtacctttttaataataaacgtttcttctcgttgcttaaacgagatgatttagtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttacacttctattgtcttattcctgtccaaaaaacaagaaagattctttctgtttatggcgtggtcaagctatacaaatttctctcgccgaagctctgtttttccaacaatatgctgatattcta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tagaatatcagcatattgttggaaaaacagagcttcggcgagagaaatttgtatagcttgaccacgccataaacagaaagaatctttcttgttttttggacaggaataagacaatagaagtgtaaatatttttcacaggcataactattgtgtaacttacttgttatcaacgcattgcaaaacctattgttttgcattccaaaagcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgcagttatcactttttaaggaaaatatctttactaaatcatctcgtttaagcaacgagaagaaacgtttattattaaaaaggtacagggcagttttgtcaatgcgtaaacatagacaccgaaagcaaaagggtatta Mask Tandem Repeat Region ================================================ taatacccttttgctttcggtgtctatgtttacgcattgacaaaactgccctgtacctttttaataataaacgtttcttctcgttgcttaaacgagatgatttagtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttacacttctattgtcttattcctgtccaaaaaacaagaaagattctttctgtttatggcgtggtcaagctatacaaatttctctcgccgaagctctgtttttccaacaatatgctgatattcta Find is-nt database================================================ Query_seq: PI1174:PI1175|PI1174:PI1175:hypothetical protein:conserved hypothetical protein:->->:1097103..1097511 409 taatacccttttgctttcggtgtctatgtttacgcattgacaaaactgccctgtacctttttaataataaacgtttcttctcgttgcttaaacgagatgatttagtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttacacttctattgtcttattcctgtccaaaaaacaagaaagattctttctgtttatggcgtggtcaagctatacaaatttctctcgccgaagctctgtttttccaacaatatgctgatattcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1174:PI1175|PI1174:PI1175:hypothetical protein:conserved hypothetical protein:->->:1097103..1097511 409 taatacccttttgctttcggtgtctatgtttacgcattgacaaaactgccctgtacctttttaataataaacgtttcttctcgttgcttaaacgagatgatttagtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttacacttctattgtcttattcctgtccaaaaaacaagaaagattctttctgtttatggcgtggtcaagctatacaaatttctctcgccgaagctctgtttttccaacaatatgctgatattcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1174:PI1175|PI1174:PI1175:hypothetical protein:conserved hypothetical protein:->->:1097103..1097511 409 taatacccttttgctttcggtgtctatgtttacgcattgacaaaactgccctgtacctttttaataataaacgtttcttctcgttgcttaaacgagatgatttagtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttacacttctattgtcttattcctgtccaaaaaacaagaaagattctttctgtttatggcgtggtcaagctatacaaatttctctcgccgaagctctgtttttccaacaatatgctgatattcta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taatacccttttgctttcggtgtctatgtttacgcattgacaaaactgccctgtacctttttaataataaacgtttcttctcgttgcttaaacgagatgatttagtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttacacttctattgtcttattcctgtccaaaaaacaagaaagattctttctgtttatggcgtggtcaagctatacaaatttctctcgccgaagctctgtttttccaacaatatgctgatattcta Predict ORF larger than 30AA ================================================ Protein_Len: 30 Strand: + Start: 134 End: 223 ..................................................................................................................................... M R F D V A K A A L L Q R K T Y A F T V Q N S R F W N A K Q .......................................................................................................................................................................................... Protein_Len: 46 Strand: + Start: 262 End: 399 ..................................................................................................................................................................................................................................................................... M V M P V K N I Y T S I V L F L S K K Q E R F F L F M A W S S Y T N F S R R S S V F P T I C .......... Protein_Len: 60 Strand: + Start: 3 End: 407 .. M P F C F R C L C L R I D K T A L Y L F N N K R F F S L L K R D D L V K I F S L K S D N C A L T L R K R L F C N A K P T .. Protein_Len: 43 Strand: + Start: 281 End: 409 ........................................................................................................................................................................................................................................................................................ M F T L L L S Y S C P K N K K D S F C L W R G Q A I Q I S L A E A L F F Q Q Y A D I L Protein_Len: 34 Strand: - Start: 181 End: 282 .................................................................................................................................................................................... A K V T C F L R K Q F A F C Y T K C H T S L L Y T V C Y N H R H F M ............................................................................................................................... Protein_Len: 60 Strand: - Start: 2 End: 262 . N S L R S S K T F I N E K F L S L Q A K V N R F R S K Q L A F G V S K G H L V A A K P I C F L L N Q L A N I V L L N C M ................................................................................................................................................... taatacccttttgctttcggtgtctatgtttacgcattgacaaaactgccctgtacctttttaataataaacgtttcttctcgttgcttaaacgagatgatttagtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttacacttctattgtcttattcctgtccaaaaaacaagaaagattctttctgtttatggcgtggtcaagctatacaaatttctctcgccgaagctctgtttttccaacaatatgctgatattcta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 87 Start: 36 End: 65 ...................................ATTGACAAAACTGCCCTGTACCTTTTTAAT........................................................................................................................................................................................................................................................................................................................................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taatacccttttgctttcggtgtctatgtttacgcattgacaaaactgccctgtacctttttaataataaacgtttcttctcgttgcttaaacgagatgatttagtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttacacttctattgtcttattcctgtccaaaaaacaagaaagattctttctgtttatggcgtggtcaagctatacaaatttctctcgccgaagctctgtttttccaacaatatgctgatattcta Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 43 HP_score: -3.4 Tail_Score: -2.72973 Start: 135 End: 180 Full_Region: tgcacggtaaaagcg taggttttgcgttgcaaaag agccg ctttcgcaacgtcaaagcgca gttatcactttttaa ......................................................................................................................................taggttttgcgttgcaaaagagccgctttcgcaacgtcaaagcgca..................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 89 HP_score: -11.2 Tail_Score: -4.13767 Start: 155 End: 205 Full_Region: TTTGACGTTGCGAAA GCGGCTCTTTTGCAACGCAAAACC TAC GCTTTTACCGTGCAAAACAGCCGC TTTTGGAATGCAAAA ..........................................................................................................................................................GCGGCTCTTTTGCAACGCAAAACCTACGCTTTTACCGTGCAAAACAGCCGC............................................................................................................................................................................................................ TransTerm Strand: - Conf: 100 HP_score: -13.4 Tail_Score: -3.54424 Start: 155 End: 205 Full_Region: ttttgcattccaaaa gcggctgttttgcacggtaaaagc gta ggttttgcgttgcaaaagagccgc tttcgcaacgtcaaa ..........................................................................................................................................................gcggctgttttgcacggtaaaagcgtaggttttgcgttgcaaaagagccgc............................................................................................................................................................................................................ TransTerm Strand: + Conf: 47 HP_score: -3.3 Tail_Score: -3.14931 Start: 209 End: 239 Full_Region: CAAAACAGCCGCTTT TGGAATGCAAAAC AATAG GTTTTGCAATGCG TTGATAACAAGTAAG ................................................................................................................................................................................................................TGGAATGCAAAACAATAGGTTTTGCAATGCG.......................................................................................................................................................................... TransTerm Strand: + Conf: 49 HP_score: -4.9 Tail_Score: -2.56596 Start: 213 End: 235 Full_Region: ACAGCCGCTTTTGGA ATGCAAAAC AATAG GTTTTGCAA TGCGTTGATAACAAG ....................................................................................................................................................................................................................ATGCAAAACAATAGGTTTTGCAA.............................................................................................................................................................................. TransTerm Strand: - Conf: 70 HP_score: -3.5 Tail_Score: -5.00616 Start: 319 End: 336 Full_Region: tgaccacgccataaa cagaaag aat ctttcttg ttttttggacaggaa ..............................................................................................................................................................................................................................................................................................................................cagaaagaatctttcttg......................................................................... TransTerm Strand: - Conf: 76 HP_score: -6.3 Tail_Score: -4.61482 Start: 322 End: 334 Full_Region: accacgccataaaca gaaag aat ctttc ttgttttttggacag .................................................................................................................................................................................................................................................................................................................................gaaagaatctttc........................................................................... Find igs database================================================ Query_seq: PI1174:PI1175|PI1174:PI1175:hypothetical protein:conserved hypothetical protein:->->:1097103..1097511 409 taatacccttttgctttcggtgtctatgtttacgcattgacaaaactgccctgtacctttttaataataaacgtttcttctcgttgcttaaacgagatgatttagtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttacacttctattgtcttattcctgtccaaaaaacaagaaagattctttctgtttatggcgtggtcaagctatacaaatttctctcgccgaagctctgtttttccaacaatatgctgatattcta Intra-Species Hit: Count: 51 Min: 1 Max: 409 Len: 409 Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 0.0 bit: 811.0 Len: 409 Query Start:1 Query End:409 Subject Strand: POSITIVE Subject Start: 1 Subject End: 409 taatacccttttgctttcggtgtctatgtttacgcattgacaaaactgccctgtacctttttaataataaacgtttcttctcgttgcttaaacgagatgatttagtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttacacttctattgtcttattcctgtccaaaaaacaagaaagattctttctgtttatggcgtggtcaagctatacaaatttctctcgccgaagctctgtttttccaacaatatgctgatattcta taatacccttttgctttcggtgtctatgtttacgcattgacaaaactgccctgtacctttttaataataaacgtttcttctcgttgcttaaacgagatgatttagtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttacacttctattgtcttattcctgtccaaaaaacaagaaagattctttctgtttatggcgtggtcaagctatacaaatttctctcgccgaagctctgtttttccaacaatatgctgatattcta Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 9.0E-69 bit: 262.0 Len: 188 Query Start:105 Query End:292 Subject Strand: POSITIVE Subject Start: 313 Subject End: 500 ........................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttacactt..................................................................................................................... ........................................................................................................gtaaagataatttctttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtcttgtaatgcgttgataacaagagaattacacaataggtgtgtctgtgaaaaatatttacactt..................................................................................................................... Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 2.0E-63 bit: 244.0 Len: 191 Query Start:100 Query End:290 Subject Strand: NEGATIVE Subject Start: 246 Subject End: 436 ...................................................................................................atttagtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttacac....................................................................................................................... ...................................................................................................attttgtaaagataattctcttaaaaagtgataactgcgctttgacgttgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacacgttgatgcacagttagttacataatagatactcgtgtgaaaaatatttacac....................................................................................................................... Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 5.0E-55 bit: 216.0 Len: 193 Query Start:105 Query End:297 Subject Strand: POSITIVE Subject Start: 54 Subject End: 246 ........................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttacacttctatt................................................................................................................ ........................................................................................................gtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttacacttttatt................................................................................................................ Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 2.0E-54 bit: 214.0 Len: 112 Query Start:120 Query End:231 Subject Strand: NEGATIVE Subject Start: 111 Subject End: 222 .......................................................................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.................................................................................................................................................................................. .......................................................................................................................ttaaaaagcgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.................................................................................................................................................................................. Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 3.0E-53 bit: 210.0 Len: 170 Query Start:120 Query End:289 Subject Strand: POSITIVE Subject Start: 498 Subject End: 667 .......................................................................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttaca........................................................................................................................ .......................................................................................................................ttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatgcgttgatacataataagttatataacagttatacttgcgaaaaatatttaca........................................................................................................................ Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 3.0E-53 bit: 210.0 Len: 170 Query Start:120 Query End:289 Subject Strand: POSITIVE Subject Start: 133 Subject End: 302 .......................................................................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttaca........................................................................................................................ .......................................................................................................................ttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttaca........................................................................................................................ Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 7.0E-51 bit: 202.0 Len: 142 Query Start:105 Query End:246 Subject Strand: NEGATIVE Subject Start: 137 Subject End: 278 ........................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataa................................................................................................................................................................... ........................................................................................................gtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgtaaaacaataggttttgtaaggcgttgataa................................................................................................................................................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 1.0E-49 bit: 198.0 Len: 188 Query Start:105 Query End:292 Subject Strand: POSITIVE Subject Start: 95 Subject End: 282 ........................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttacactt..................................................................................................................... ........................................................................................................gtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttgaaatatagcgagttagacaacaactatgcttgtgaaaaatatttacactt..................................................................................................................... Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 1.0E-49 bit: 198.0 Len: 140 Query Start:105 Query End:244 Subject Strand: POSITIVE Subject Start: 172 Subject End: 311 ........................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgat..................................................................................................................................................................... ........................................................................................................gtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgat..................................................................................................................................................................... Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 2.0E-48 bit: 194.0 Len: 114 Query Start:119 Query End:232 Subject Strand: POSITIVE Subject Start: 232 Subject End: 345 ......................................................................................................................cttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg................................................................................................................................................................................. ......................................................................................................................cttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg................................................................................................................................................................................. Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 7.0E-48 bit: 192.0 Len: 125 Query Start:120 Query End:244 Subject Strand: POSITIVE Subject Start: 130 Subject End: 254 .......................................................................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgat..................................................................................................................................................................... .......................................................................................................................ttaaaaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttataatgcgttgat..................................................................................................................................................................... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 7.0E-48 bit: 192.0 Len: 113 Query Start:120 Query End:232 Subject Strand: POSITIVE Subject Start: 78 Subject End: 190 .......................................................................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg................................................................................................................................................................................. .......................................................................................................................ttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttg................................................................................................................................................................................. Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 7.0E-48 bit: 192.0 Len: 145 Query Start:123 Query End:267 Subject Strand: POSITIVE Subject Start: 32 Subject End: 176 ..........................................................................................................................aaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagtt.............................................................................................................................................. ..........................................................................................................................aaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgatagaaagagagttatacaatagtt.............................................................................................................................................. Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 3.0E-47 bit: 190.0 Len: 128 Query Start:105 Query End:232 Subject Strand: POSITIVE Subject Start: 152 Subject End: 279 ........................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg................................................................................................................................................................................. ........................................................................................................gtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg................................................................................................................................................................................. Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 3.0E-47 bit: 190.0 Len: 128 Query Start:120 Query End:247 Subject Strand: NEGATIVE Subject Start: 81 Subject End: 208 .......................................................................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataac.................................................................................................................................................................. .......................................................................................................................ttaaaaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgcaatgcattgataac.................................................................................................................................................................. Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 127 Query Start:105 Query End:231 Subject Strand: POSITIVE Subject Start: 203 Subject End: 329 ........................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.................................................................................................................................................................................. ........................................................................................................gtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt.................................................................................................................................................................................. Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 4.0E-46 bit: 186.0 Len: 142 Query Start:105 Query End:246 Subject Strand: POSITIVE Subject Start: 117 Subject End: 258 ........................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataa................................................................................................................................................................... ........................................................................................................gtaaagataatttctttgaaaaatggtaatttcgatttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgttgataa................................................................................................................................................................... Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 4.0E-46 bit: 186.0 Len: 170 Query Start:120 Query End:289 Subject Strand: POSITIVE Subject Start: 275 Subject End: 444 .......................................................................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttaca........................................................................................................................ .......................................................................................................................ttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttaca........................................................................................................................ Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 4.0E-46 bit: 186.0 Len: 150 Query Start:140 Query End:289 Subject Strand: NEGATIVE Subject Start: 30 Subject End: 179 ...........................................................................................................................................tttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttaca........................................................................................................................ ...........................................................................................................................................tttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacacgttgataacaagacgattacacaagagatactcttgtgaaaaatatttaca........................................................................................................................ Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 2.0E-45 bit: 184.0 Len: 125 Query Start:120 Query End:244 Subject Strand: NEGATIVE Subject Start: 82 Subject End: 206 .......................................................................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgat..................................................................................................................................................................... .......................................................................................................................ttaaaaactgataactgcgctttgacgttgcgaaagcggctcttttacgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgtaatacgttgat..................................................................................................................................................................... Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 2.0E-45 bit: 184.0 Len: 117 Query Start:120 Query End:236 Subject Strand: NEGATIVE Subject Start: 93 Subject End: 209 .......................................................................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaat............................................................................................................................................................................. .......................................................................................................................ttaaaaactgataactgcgttttgacattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgcaat............................................................................................................................................................................. Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 3.0E-44 bit: 180.0 Len: 171 Query Start:120 Query End:290 Subject Strand: NEGATIVE Subject Start: 638 Subject End: 808 .......................................................................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttacac....................................................................................................................... .......................................................................................................................ttaaaaagtgataactgtactttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatacaaaacaataggttttgtaatgagctgatagatagtgaattatgcaacagttatgtttgtgaaaaatatttacac....................................................................................................................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 1.0E-43 bit: 178.0 Len: 185 Query Start:105 Query End:289 Subject Strand: POSITIVE Subject Start: 150 Subject End: 334 ........................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataaca-agtaagttacacaatagttatgcctgtgaaaaatatttaca........................................................................................................................ ........................................................................................................gtaaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacattga-agcatagcaagttacacaacagttacacctgcgaaaaatatttaca........................................................................................................................ Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 1.0E-43 bit: 178.0 Len: 118 Query Start:140 Query End:257 Subject Strand: NEGATIVE Subject Start: 15 Subject End: 132 ...........................................................................................................................................tttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagtta........................................................................................................................................................ ...........................................................................................................................................tttgacgttgcgaaagcggctcttttacaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggttttgtaaagcattgataaagagtaagtta........................................................................................................................................................ Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 2.0E-42 bit: 174.0 Len: 140 Query Start:105 Query End:244 Subject Strand: POSITIVE Subject Start: 189 Subject End: 328 ........................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgat..................................................................................................................................................................... ........................................................................................................gtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgat..................................................................................................................................................................... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 6.0E-42 bit: 172.0 Len: 135 Query Start:105 Query End:239 Subject Strand: POSITIVE Subject Start: 170 Subject End: 304 ........................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcg.......................................................................................................................................................................... ........................................................................................................gtaaagataattctcttaaaaattgataactgcgttttgacattgcgaaagcggctgttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcg.......................................................................................................................................................................... Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 2.0E-41 bit: 170.0 Len: 150 Query Start:140 Query End:289 Subject Strand: POSITIVE Subject Start: 194 Subject End: 343 ...........................................................................................................................................tttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttaca........................................................................................................................ ...........................................................................................................................................tttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttaca........................................................................................................................ Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 4.0E-40 bit: 167.0 Len: 128 Query Start:105 Query End:232 Subject Strand: NEGATIVE Subject Start: 254 Subject End: 381 ........................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg................................................................................................................................................................................. ........................................................................................................gtaaagataattctcttaaaaagtgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccacttttggaacgcaaaacaataggttttg................................................................................................................................................................................. Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 133 Query Start:99 Query End:231 Subject Strand: POSITIVE Subject Start: 139 Subject End: 271 ..................................................................................................gatttagtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.................................................................................................................................................................................. ..................................................................................................gattttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt.................................................................................................................................................................................. Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 6.0E-36 bit: 153.0 Len: 141 Query Start:105 Query End:245 Subject Strand: NEGATIVE Subject Start: 397 Subject End: 537 ........................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgata.................................................................................................................................................................... ........................................................................................................gtaaagataattacattgaaaattgataatttcgttttgacgttgcgaaagcggctgttttgcgaggtaaaacctacgcttttgccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaacacgttgata.................................................................................................................................................................... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 4.0E-34 bit: 147.0 Len: 186 Query Start:105 Query End:290 Subject Strand: NEGATIVE Subject Start: 120 Subject End: 305 ........................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttacac....................................................................................................................... ........................................................................................................gtaaagataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttacaaagcgttgataataaagcagttacgcaaaagatattgttgtgaaaaatatttacac....................................................................................................................... Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 4.0E-34 bit: 147.0 Len: 138 Query Start:105 Query End:242 Subject Strand: POSITIVE Subject Start: 205 Subject End: 341 ........................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttg....................................................................................................................................................................... ........................................................................................................gtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcgttg....................................................................................................................................................................... Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 2.0E-32 bit: 141.0 Len: 127 Query Start:120 Query End:246 Subject Strand: NEGATIVE Subject Start: 332 Subject End: 458 .......................................................................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataa................................................................................................................................................................... .......................................................................................................................ttaaaaagtgataactgcgctttgacattgcgaaagcgtaggttttgcgatgcaaaagcgccacttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgcaatgcgttgataa................................................................................................................................................................... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 9.0E-32 bit: 139.0 Len: 166 Query Start:98 Query End:263 Subject Strand: POSITIVE Subject Start: 188 Subject End: 353 .................................................................................................tgatttagtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaat.................................................................................................................................................. .................................................................................................tgattttgtaaagataatttcgttaaaaagtgataactgcactttgacgttgcgaaagcggctgttttacgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttaggacgcaaaacaatagattttgtaatgcattgacaacaagatagttagacaat.................................................................................................................................................. Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 1.0E-30 bit: 135.0 Len: 144 Query Start:147 Query End:290 Subject Strand: NEGATIVE Subject Start: 48 Subject End: 191 ..................................................................................................................................................ttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttacac....................................................................................................................... ..................................................................................................................................................ttgcgaaagcggctgttttgcaacgcaaaacagccgcttttgccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgcaatgtgttgataacgagttagttatgtaatatctttgcttgtgaaaaatatttacac....................................................................................................................... Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 8.0E-29 bit: 129.0 Len: 113 Query Start:120 Query End:232 Subject Strand: POSITIVE Subject Start: 206 Subject End: 318 .......................................................................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg................................................................................................................................................................................. .......................................................................................................................ttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttg................................................................................................................................................................................. Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 141 Query Start:105 Query End:245 Subject Strand: POSITIVE Subject Start: 83 Subject End: 223 ........................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgata.................................................................................................................................................................... ........................................................................................................gtaaagataatttcgttgaaaagtggtaattgcgctttggcattgcgaaagcggctgttttgcgatgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatgtgttgata.................................................................................................................................................................... Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 8.0E-26 bit: 119.0 Len: 104 Query Start:140 Query End:243 Subject Strand: NEGATIVE Subject Start: 45 Subject End: 148 ...........................................................................................................................................tttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttga...................................................................................................................................................................... ...........................................................................................................................................tttggcgttgcgaaagcggctgttttgcagcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaaagcgttga...................................................................................................................................................................... Subject: pint_PI1117_PI1118|glycosyl transferase, family 2:glycosyl transferases, group 1|POSITIVE:POSITIVE|[1042340,1042635]|296 HSP 1 e-value: 8.0E-26 bit: 119.0 Len: 151 Query Start:139 Query End:289 Subject Strand: NEGATIVE Subject Start: 31 Subject End: 181 ..........................................................................................................................................ctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgata-acaagtaagttacacaatagttatgcctgtgaaaaatatttaca........................................................................................................................ ..........................................................................................................................................ctttgacattccaaaagcggttgttttgcgatgcaaaacctacgcttttaccgtgtaaaacagccgcttttggaacgcgaaacaataggttttacaatgtcttgatagacaa-caagttaagcaatagttacgcttgtgaaaaagatttaca........................................................................................................................ Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 3.0E-25 bit: 117.0 Len: 143 Query Start:147 Query End:289 Subject Strand: POSITIVE Subject Start: 187 Subject End: 329 ..................................................................................................................................................ttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttaca........................................................................................................................ ..................................................................................................................................................ttgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttaca........................................................................................................................ Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 5.0E-21 bit: 103.0 Len: 136 Query Start:162 Query End:297 Subject Strand: NEGATIVE Subject Start: 167 Subject End: 302 .................................................................................................................................................................ttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttacacttctatt................................................................................................................ .................................................................................................................................................................ttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacacttttggaatgcaaaacaataggttttataatacactgacaagcaataggttacacaatagttgtgcttgtgaaaaatatttacagttctatt................................................................................................................ Subject: pint_PI0854_PI0855|MiaB-like tRNA modifying enzyme:hypothetical protein|POSITIVE:POSITIVE|[788060,789233]|1174 HSP 1 e-value: 2.0E-20 bit: 101.0 Len: 167 Query Start:123 Query End:289 Subject Strand: POSITIVE Subject Start: 763 Subject End: 929 ..........................................................................................................................aaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttaca........................................................................................................................ ..........................................................................................................................aaaaatgataatttcgatttggcgttgcgaaagcgtaggttttgcaacgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttataatatgttgataaacagaaagttatgcgatagttgcatctgtgaaaaatatttaca........................................................................................................................ Subject: pint_PI1324_PI1325|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1243086,1243554]|469 HSP 1 e-value: 7.0E-20 bit: 99.6 Len: 170 Query Start:120 Query End:289 Subject Strand: NEGATIVE Subject Start: 204 Subject End: 373 .......................................................................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttaca........................................................................................................................ .......................................................................................................................ttaaaaagtgataactgcactttggcattgtaaaagcggctgttttgcatcgcaaaacagccgcttttggctggtaaaagagccgcttttacaatgtaaaacaataggttttgtaattcgttgataattagtttgttaggcaacagttatgtttgtgaaaaatatttaca........................................................................................................................ Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 7.0E-20 bit: 99.6 Len: 122 Query Start:181 Query End:302 Subject Strand: POSITIVE Subject Start: 224 Subject End: 345 ....................................................................................................................................................................................cgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacacaatagttatgcctgtgaaaaatatttacacttctattgtctt........................................................................................................... ....................................................................................................................................................................................cgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgcaaagtcttgatagtgagatagttatgcaatggttacgcttgtgaaaaatatttacacttttattatctt........................................................................................................... HSP 2 e-value: 7.0E-11 bit: 69.9 Len: 35 Query Start:152 Query End:186 Subject Strand: NEGATIVE Subject Start: 195 Subject End: 229 .......................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt............................................................................................................................................................................................................................... .......................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt............................................................................................................................................................................................................................... Subject: pint_PI1441_PI1442|hypothetical protein:radical-activating enzyme (pyruvate-formate lyase-activating enzyme)|POSITIVE:POSITIVE|[1363734,1364088]|355 HSP 1 e-value: 3.0E-19 bit: 97.6 Len: 121 Query Start:140 Query End:260 Subject Strand: NEGATIVE Subject Start: 57 Subject End: 177 ...........................................................................................................................................tttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgataacaagtaagttacac..................................................................................................................................................... ...........................................................................................................................................tttgacgttgcgaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttgtaaagcgttgataacgagtttgttacac..................................................................................................................................................... HSP 2 e-value: 4.0E-6 bit: 54.0 Len: 35 Query Start:152 Query End:186 Subject Strand: POSITIVE Subject Start: 131 Subject End: 165 .......................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt............................................................................................................................................................................................................................... .......................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgcttt............................................................................................................................................................................................................................... Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 104 Query Start:120 Query End:223 Subject Strand: POSITIVE Subject Start: 245 Subject End: 348 .......................................................................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaa.......................................................................................................................................................................................... .......................................................................................................................ttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa.......................................................................................................................................................................................... Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 112 Query Start:120 Query End:231 Subject Strand: POSITIVE Subject Start: 130 Subject End: 241 .......................................................................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.................................................................................................................................................................................. .......................................................................................................................ttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.................................................................................................................................................................................. Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 7.0E-14 bit: 79.8 Len: 140 Query Start:105 Query End:244 Subject Strand: NEGATIVE Subject Start: 166 Subject End: 305 ........................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgat..................................................................................................................................................................... ........................................................................................................gtaaagataattttattaaaaagtggcaattgcgttttgacattgcaaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcgaaacaataggttttacaatgccttgat..................................................................................................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:152 Query End:187 Subject Strand: POSITIVE Subject Start: 224 Subject End: 259 .......................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgctttt.............................................................................................................................................................................................................................. .......................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt.............................................................................................................................................................................................................................. Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 7.0E-11 bit: 69.9 Len: 119 Query Start:105 Query End:223 Subject Strand: NEGATIVE Subject Start: 199 Subject End: 317 ........................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaa.......................................................................................................................................................................................... ........................................................................................................gtaaagataattcccttaaaaaaggataactgcgctttggcattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaa.......................................................................................................................................................................................... HSP 2 e-value: 7.0E-11 bit: 69.9 Len: 35 Query Start:152 Query End:186 Subject Strand: POSITIVE Subject Start: 236 Subject End: 270 .......................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt............................................................................................................................................................................................................................... .......................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt............................................................................................................................................................................................................................... Subject: pint_PI1937_PI1938|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1891147,1891993]|847 HSP 1 e-value: 1.0E-9 bit: 65.9 Len: 113 Query Start:120 Query End:232 Subject Strand: POSITIVE Subject Start: 521 Subject End: 633 .......................................................................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg................................................................................................................................................................................. .......................................................................................................................ttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttg................................................................................................................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAUACCCUUUUGCUUUCGGUGUCUAUGUUUACGCAUUGACAAAACUGCCCUGUACCUUUUUAAUAAUAAACGUUUCUUCUCGUUGCUUAAACGAGAUGAUUUAGUAAAGAUAUUUUCCUUAAAAAGUGAUAACUGCGCUUUGACGUUGCGAAAGCGGCUCUUUUGCAACGCAAAACCUACGCUUUUACCGUGCAAAACAGCCGCUUUUGGAAUGCAAAACAAUAGGUUUUGCAAUGCGUUGAUAACAAGUAAGUUACACAAUAGUUAUGCCUGUGAAAAAUAUUUACACUUCUAUUGUCUUAUUCCUGUCCAAAAAACAAGAAAGAUUCUUUCUGUUUAUGGCGUGGUCAAGCUAUACAAAUUUCUCUCGCCGAAGCUCUGUUUUUCCAACAAUAUGCUGAUAUUCUA ............((((.(((((....((((.((((((((.(((((((((..(((..((((((((......((...((.(((((((.....))))))).))....))...((.....)).))))))))..)))...))..((((.((((.(((((((((((.(((((((.((.((((.......))))..))))))))).))))))))))).))))))))......))))))))))))))).))))....(((((((..(((((((.......((((((.....))))))...)))))))......((((.(((..(((((.(((((...)))))))))).))))).))...)))).)))..........)))))))))..((((.....))))................ (-103.10) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGAAUAUCAGCAUAUUGUUGGAAAAACAGAGCUUCGGCGAGAGAAAUUUGUAUAGCUUGACCACGCCAUAAACAGAAAGAAUCUUUCUUGUUUUUUGGACAGGAAUAAGACAAUAGAAGUGUAAAUAUUUUUCACAGGCAUAACUAUUGUGUAACUUACUUGUUAUCAACGCAUUGCAAAACCUAUUGUUUUGCAUUCCAAAAGCGGCUGUUUUGCACGGUAAAAGCGUAGGUUUUGCGUUGCAAAAGAGCCGCUUUCGCAACGUCAAAGCGCAGUUAUCACUUUUUAAGGAAAAUAUCUUUACUAAAUCAUCUCGUUUAAGCAACGAGAAGAAACGUUUAUUAUUAAAAAGGUACAGGGCAGUUUUGUCAAUGCGUAAACAUAGACACCGAAAGCAAAAGGGUAUUA ...((((((......(((((.....))))).(((((((.(.........((.(((((..(.((...(((.((((((((((...))))).)))))..)))...))....(.(((((((..((((...............))))..))))))).)......)..)))))))((((((((((((((.....(((((((.((.(.(((((((((.(((((((((...(((((....))))).)).))))))).))))))))).).)).).))))))...(((...((((((((((((.....)))))).....((.(((((((.....))))))).))...............))))))....))).)))))).)))))))).........).))).)))).....)))))). (-104.86) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 965 180 131 179 130 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 906 220 171 88 39 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 906 220 171 88 39 pint:PI1346|5end_hypothetical_protein_1260814..1261044_POSITIVE 906 220 171 76 27 pint:PI1129|5end_hypothetical_protein_1055377..1055607_POSITIVE 906 220 171 214 165 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 906 220 171 60 11 pint:PI0061|5end_hypothetical_protein_60500..60730_POSITIVE 906 220 171 137 88 pint:PI0055|5end_hypothetical_protein_54815..55045_POSITIVE 906 220 171 60 11 pint:PI0004|5end_hypothetical_protein_6199..6429_POSITIVE 885 230 181 55 6 pint:PI1905|5end_hypothetical_protein_1847628..1847858_POSITIVE 885 230 181 59 10 pint:PI1339|5end_hypothetical_protein_1256671..1256901_POSITIVE 885 230 181 59 10 pint:PI0104|5end_hypothetical_protein_99105..99335_POSITIVE 885 230 181 59 10 pint:PI0053|5end_hypothetical_protein_54727..54957_POSITIVE 880 220 171 88 39 pint:PI2002|5end_hypothetical_protein_1960662..1960892_POSITIVE 879 190 141 58 9 pint:PI1567|5end_hypothetical_protein_1489229..1489459_POSITIVE 877 200 151 68 19 pint:PI1829|5end_hypothetical_protein_1769255..1769485_POSITIVE 873 190 141 58 9 pint:PI1076|5end_hypothetical_protein_998893..999123_POSITIVE 859 190 141 200 151 pint:PI1486|5end_alginate_O-acetylation_protein_1405507..1405737_POSITIVE 834 198 151 54 7 pint:PI2144|5end_hypothetical_protein_2091954..2092184_POSITIVE 834 220 171 88 39 pint:PI1934|5end_hypothetical_protein_1882363..1882593_POSITIVE 834 220 171 71 22 pint:PI1528|5end_hypothetical_protein_1449685..1449915_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 929 200 151 150 101 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 906 220 171 130 81 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 906 220 171 71 22 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 885 230 181 53 4 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 885 230 181 53 4 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE 877 220 171 130 81 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 877 190 141 140 91 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 873 190 141 150 101 pint:PI1076|3end_hypothetical_protein_999065..999215_POSITIVE 870 190 141 114 66 pint:PI1356|3end_hypothetical_protein_1273340..1273490_POSITIVE 829 220 171 71 22 pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE 824 190 141 140 91 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 809 240 191 57 8 pint:PI0669|3end_hypothetical_protein_611147..611297_POSITIVE 802 250 201 53 4 pint:PI1813|3end_hypothetical_protein_1753086..1753236_POSITIVE 791 190 141 150 101 pint:PI1601|3end_hypothetical_protein_1530454..1530604_POSITIVE 785 167 121 117 71 pint:PI0200|3end_hypothetical_protein_191735..191885_POSITIVE 779 230 182 49 1 pint:PI1051|3end_hypothetical_protein_970228..970378_POSITIVE 770 190 141 144 95 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 758 160 113 150 104 pint:PI0104|3end_hypothetical_protein_99346..99496_POSITIVE 746 200 151 150 101 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 739 200 151 150 101 pint:PI0670|3end_hypothetical_protein_611280..611430_POSITIVE