Origin IGS: taaaaatgtttcatcttgaaatatcattattacaaataaggtaagagcaaggtatgacatttgcataaatgcacatttaggagtttattaaacttaaaatataaaatagagggcatatcaatttgatgtgccctctgtttttttctcccttgtaaacaaattctaaaaggaaactatcaaagttataaaacgaattgaatatctacctcccatttaatgaaattacttaaaaatctatatattaatgttttaacgtaagtatgattgatattgtttgctaaagttttttctatattcatagcaggctgtaaagtacacaatgtattgtacttttttaaatttctacataagaaaattgttactataaaataaaattcgtatctttgcacacattataataaagaatctgactaaataactctgcgggcttcattgaatcctataggtggagaatgtgttagagaattctgttctaacctttttaaatattagaaagggaggaagaggtgtaatctcaaaacaactcataaattacctaacaacacattctctggaataaataaagcaaagttatttataagaaatccataaaactacacactattacgatgttggaaaaatcatcaaagatatatattgctgggcacaggggc .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 gcccctgtgcccagcaatatatatctttgatgatttttccaacatcgtaatagtgtgtagttttatggatttcttataaataactttgctttatttattccagagaatgtgttgttaggtaatttatgagttgttttgagattacacctcttcctccctttctaatatttaaaaaggttagaacagaattctctaacacattctccacctataggattcaatgaagcccgcagagttatttagtcagattctttattataatgtgtgcaaagatacgaattttattttatagtaacaattttcttatgtagaaatttaaaaaagtacaatacattgtgtactttacagcctgctatgaatatagaaaaaactttagcaaacaatatcaatcatacttacgttaaaacattaatatatagatttttaagtaatttcattaaatgggaggtagatattcaattcgttttataactttgatagtttccttttagaatttgtttacaagggagaaaaaaacagagggcacatcaaattgatatgccctctattttatattttaagtttaataaactcctaaatgtgcatttatgcaaatgtcataccttgctcttaccttatttgtaataatgatatttcaagatgaaacattttta Mask Tandem Repeat Region ================================================ taaaaatgtttcatcttgaaatatcattattacaaataaggtaagagcaaggtatgacatttgcataaatgcacatttaggagtttattaaacttaaaatataaaatagagggcatatcaatttgatgtgccctctgtttttttctcccttgtaaacaaattctaaaaggaaactatcaaagttataaaacgaattgaatatctacctcccatttaatgaaattacttaaaaatctatatattaatgttttaacgtaagtatgattgatattgtttgctaaagttttttctatattcatagcaggctgtaaagtacacaatgtattgtacttttttaaatttctacataagaaaattgttactataaaataaaattcgtatctttgcacacattataataaagaatctgactaaataactctgcgggcttcattgaatcctataggtggagaatgtgttagagaattctgttctaacctttttaaatattagaaagggaggaagaggtgtaatctcaaaacaactcataaattacctaacaacacattctctggaataaataaagcaaagttatttataagaaatccataaaactacacactattacgatgttggaaaaatcatcaaagatatatattgctgggcacaggggc Find is-nt database================================================ Query_seq: PI1103:PI1104|PI1103:PI1104:hypothetical protein:GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-redu ctase:->->:1027236..1027888 653 taaaaatgtttcatcttgaaatatcattattacaaataaggtaagagcaaggtatgacatttgcataaatgcacatttaggagtttattaaacttaaaatataaaatagagggcatatcaatttgatgtgccctctgtttttttctcccttgtaaacaaattctaaaaggaaactatcaaagttataaaacgaattgaatatctacctcccatttaatgaaattacttaaaaatctatatattaatgttttaacgtaagtatgattgatattgtttgctaaagttttttctatattcatagcaggctgtaaagtacacaatgtattgtacttttttaaatttctacataagaaaattgttactataaaataaaattcgtatctttgcacacattataataaagaatctgactaaataactctgcgggcttcattgaatcctataggtggagaatgtgttagagaattctgttctaacctttttaaatattagaaagggaggaagaggtgtaatctcaaaacaactcataaattacctaacaacacattctctggaataaataaagcaaagttatttataagaaatccataaaactacacactattacgatgttggaaaaatcatcaaagatatatattgctgggcacaggggc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1103:PI1104|PI1103:PI1104:hypothetical protein:GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-redu ctase:->->:1027236..1027888 653 taaaaatgtttcatcttgaaatatcattattacaaataaggtaagagcaaggtatgacatttgcataaatgcacatttaggagtttattaaacttaaaatataaaatagagggcatatcaatttgatgtgccctctgtttttttctcccttgtaaacaaattctaaaaggaaactatcaaagttataaaacgaattgaatatctacctcccatttaatgaaattacttaaaaatctatatattaatgttttaacgtaagtatgattgatattgtttgctaaagttttttctatattcatagcaggctgtaaagtacacaatgtattgtacttttttaaatttctacataagaaaattgttactataaaataaaattcgtatctttgcacacattataataaagaatctgactaaataactctgcgggcttcattgaatcctataggtggagaatgtgttagagaattctgttctaacctttttaaatattagaaagggaggaagaggtgtaatctcaaaacaactcataaattacctaacaacacattctctggaataaataaagcaaagttatttataagaaatccataaaactacacactattacgatgttggaaaaatcatcaaagatatatattgctgggcacaggggc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1103:PI1104|PI1103:PI1104:hypothetical protein:GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-redu ctase:->->:1027236..1027888 653 taaaaatgtttcatcttgaaatatcattattacaaataaggtaagagcaaggtatgacatttgcataaatgcacatttaggagtttattaaacttaaaatataaaatagagggcatatcaatttgatgtgccctctgtttttttctcccttgtaaacaaattctaaaaggaaactatcaaagttataaaacgaattgaatatctacctcccatttaatgaaattacttaaaaatctatatattaatgttttaacgtaagtatgattgatattgtttgctaaagttttttctatattcatagcaggctgtaaagtacacaatgtattgtacttttttaaatttctacataagaaaattgttactataaaataaaattcgtatctttgcacacattataataaagaatctgactaaataactctgcgggcttcattgaatcctataggtggagaatgtgttagagaattctgttctaacctttttaaatattagaaagggaggaagaggtgtaatctcaaaacaactcataaattacctaacaacacattctctggaataaataaagcaaagttatttataagaaatccataaaactacacactattacgatgttggaaaaatcatcaaagatatatattgctgggcacaggggc Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taaaaatgtttcatcttgaaatatcattattacaaataaggtaagagcaaggtatgacatttgcataaatgcacatttaggagtttattaaacttaaaatataaaatagagggcatatcaatttgatgtgccctctgtttttttctcccttgtaaacaaattctaaaaggaaactatcaaagttataaaacgaattgaatatctacctcccatttaatgaaattacttaaaaatctatatattaatgttttaacgtaagtatgattgatattgtttgctaaagttttttctatattcatagcaggctgtaaagtacacaatgtattgtacttttttaaatttctacataagaaaattgttactataaaataaaattcgtatctttgcacacattataataaagaatctgactaaataactctgcgggcttcattgaatcctataggtggagaatgtgttagagaattctgttctaacctttttaaatattagaaagggaggaagaggtgtaatctcaaaacaactcataaattacctaacaacacattctctggaataaataaagcaaagttatttataagaaatccataaaactacacactattacgatgttggaaaaatcatcaaagatatatattgctgggcacaggggc Predict ORF larger than 30AA ================================================ Protein_Len: 35 Strand: + Start: 265 End: 369 ........................................................................................................................................................................................................................................................................ M I L F A K V F S I F I A G C K V H N V L Y F F K F L H K K I V T I K ............................................................................................................................................................................................................................................................................................ Protein_Len: 37 Strand: + Start: 446 End: 556 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................. M E N V L E N S V L T F L N I R K G G R G V I S K Q L I N Y L T T H S L E ................................................................................................. Protein_Len: 32 Strand: - Start: 433 End: 528 ................................................................................................................................................................................................................................................................................................................................................................................................................................................ Q I R Y T S F T N S F E T R V K K F I L F P P L P T I E F C S M ............................................................................................................................. Protein_Len: 60 Strand: - Start: 186 End: 389 ......................................................................................................................................................................................... W K I F N S L F R Y I L T K V Y T H N I N N A L T K E I N M A P Q L T C L T N Y K K L N R C L F I T V I F Y F E Y R Q M ........................................................................................................................................................................................................................................................................ Protein_Len: 41 Strand: - Start: 80 End: 202 ............................................................................... S N I L S L I Y F L P C I L K I H G R N K E G K Y V F E L L F S D F N Y F S N F M ................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 43 Strand: - Start: 33 End: 161 ................................ L Y P L L L T H C K C L H V N L L K N F K F Y L I S P M D I Q H A R Q K K R G Q L C M ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ taaaaatgtttcatcttgaaatatcattattacaaataaggtaagagcaaggtatgacatttgcataaatgcacatttaggagtttattaaacttaaaatataaaatagagggcatatcaatttgatgtgccctctgtttttttctcccttgtaaacaaattctaaaaggaaactatcaaagttataaaacgaattgaatatctacctcccatttaatgaaattacttaaaaatctatatattaatgttttaacgtaagtatgattgatattgtttgctaaagttttttctatattcatagcaggctgtaaagtacacaatgtattgtacttttttaaatttctacataagaaaattgttactataaaataaaattcgtatctttgcacacattataataaagaatctgactaaataactctgcgggcttcattgaatcctataggtggagaatgtgttagagaattctgttctaacctttttaaatattagaaagggaggaagaggtgtaatctcaaaacaactcataaattacctaacaacacattctctggaataaataaagcaaagttatttataagaaatccataaaactacacactattacgatgttggaaaaatcatcaaagatatatattgctgggcacaggggc Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: - Score: 81 Start: 160 End: 189 ...............................................................................................................................................................TTTATAACTTTGATAGTTTCCTTTTAGAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taaaaatgtttcatcttgaaatatcattattacaaataaggtaagagcaaggtatgacatttgcataaatgcacatttaggagtttattaaacttaaaatataaaatagagggcatatcaatttgatgtgccctctgtttttttctcccttgtaaacaaattctaaaaggaaactatcaaagttataaaacgaattgaatatctacctcccatttaatgaaattacttaaaaatctatatattaatgttttaacgtaagtatgattgatattgtttgctaaagttttttctatattcatagcaggctgtaaagtacacaatgtattgtacttttttaaatttctacataagaaaattgttactataaaataaaattcgtatctttgcacacattataataaagaatctgactaaataactctgcgggcttcattgaatcctataggtggagaatgtgttagagaattctgttctaacctttttaaatattagaaagggaggaagaggtgtaatctcaaaacaactcataaattacctaacaacacattctctggaataaataaagcaaagttatttataagaaatccataaaactacacactattacgatgttggaaaaatcatcaaagatatatattgctgggcacaggggc Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -15.6 Tail_Score: -5.66684 Start: 107 End: 137 Full_Region: ACTTAAAATATAAAA TAGAGGGCATATCA ATT TGATGTGCCCTCTG TTTTTTTCTCCCTTG ..........................................................................................................TAGAGGGCATATCAATTTGATGTGCCCTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -11.2 Tail_Score: -4.90471 Start: 107 End: 137 Full_Region: caagggagaaaaaaa cagagggcacatca aat tgatatgccctcta ttttatattttaagt ..........................................................................................................cagagggcacatcaaattgatatgccctcta.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 100 HP_score: -16.0 Tail_Score: -4.46105 Start: 109 End: 135 Full_Region: TTAAAATATAAAATA GAGGGCATATCA ATT TGATGTGCCCTC TGTTTTTTTCTCCCT ............................................................................................................GAGGGCATATCAATTTGATGTGCCCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -13.8 Tail_Score: -4.05763 Start: 109 End: 135 Full_Region: agggagaaaaaaaca gagggcacatca aat tgatatgccctc tattttatattttaa ............................................................................................................gagggcacatcaaattgatatgccctc...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... TransTerm Strand: + Conf: 75 HP_score: -4.2 Tail_Score: -5.24449 Start: 308 End: 330 Full_Region: TATTCATAGCAGGCT GTAAAGTACA CAA TGTATTGTAC TTTTTTAAATTTCTA ...................................................................................................................................................................................................................................................................................................................GTAAAGTACACAATGTATTGTAC................................................................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PI1103:PI1104|PI1103:PI1104:hypothetical protein:GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-redu ctase:->->:1027236..1027888 653 taaaaatgtttcatcttgaaatatcattattacaaataaggtaagagcaaggtatgacatttgcataaatgcacatttaggagtttattaaacttaaaatataaaatagagggcatatcaatttgatgtgccctctgtttttttctcccttgtaaacaaattctaaaaggaaactatcaaagttataaaacgaattgaatatctacctcccatttaatgaaattacttaaaaatctatatattaatgttttaacgtaagtatgattgatattgtttgctaaagttttttctatattcatagcaggctgtaaagtacacaatgtattgtacttttttaaatttctacataagaaaattgttactataaaataaaattcgtatctttgcacacattataataaagaatctgactaaataactctgcgggcttcattgaatcctataggtggagaatgtgttagagaattctgttctaacctttttaaatattagaaagggaggaagaggtgtaatctcaaaacaactcataaattacctaacaacacattctctggaataaataaagcaaagttatttataagaaatccataaaactacacactattacgatgttggaaaaatcatcaaagatatatattgctgggcacaggggc Intra-Species Hit: Count: 1 Min: 1 Max: 653 Len: 653 Subject: pint_PI1103_PI1104|hypothetical protein:GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-redu ctase|POSITIVE:POSITIVE|[1027236,1027888]|653 HSP 1 e-value: 0.0 bit: 1253.0 Len: 653 Query Start:1 Query End:653 Subject Strand: POSITIVE Subject Start: 1 Subject End: 653 taaaaatgtttcatcttgaaatatcattattacaaataaggtaagagcaaggtatgacatttgcataaatgcacatttaggagtttattaaacttaaaatataaaatagagggcatatcaatttgatgtgccctctgnnnnnnnctcccttgtaaacaaattctaaaaggaaactatcaaagttataaaacgaattgaatatctacctcccatttaatgaaattacttaaaaatctatatattaatgttttaacgtaagtatgattgatattgtttgctaaagttttttctatattcatagcaggctgtaaagtacacaatgtattgtacttttttaaatttctacataagaaaattgttactataaaataaaattcgtatctttgcacacattataataaagaatctgactaaataactctgcgggcttcattgaatcctataggtggagaatgtgttagagaattctgttctaacctttttaaatattagaaagggaggaagaggtgtaatctcaaaacaactcataaattacctaacaacacattctctggaataaataaagcaaagttatttataagaaatccataaaactacacactattacgatgttggaaaaatcatcaaagatatatattgctgggcacaggggc taaaaatgtttcatcttgaaatatcattattacaaataaggtaagagcaaggtatgacatttgcataaatgcacatttaggagtttattaaacttaaaatataaaatagagggcatatcaatttgatgtgccctctgtttttttctcccttgtaaacaaattctaaaaggaaactatcaaagttataaaacgaattgaatatctacctcccatttaatgaaattacttaaaaatctatatattaatgttttaacgtaagtatgattgatattgtttgctaaagttttttctatattcatagcaggctgtaaagtacacaatgtattgtacttttttaaatttctacataagaaaattgttactataaaataaaattcgtatctttgcacacattataataaagaatctgactaaataactctgcgggcttcattgaatcctataggtggagaatgtgttagagaattctgttctaacctttttaaatattagaaagggaggaagaggtgtaatctcaaaacaactcataaattacctaacaacacattctctggaataaataaagcaaagttatttataagaaatccataaaactacacactattacgatgttggaaaaatcatcaaagatatatattgctgggcacaggggc Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAAAUGUUUCAUCUUGAAAUAUCAUUAUUACAAAUAAGGUAAGAGCAAGGUAUGACAUUUGCAUAAAUGCACAUUUAGGAGUUUAUUAAACUUAAAAUAUAAAAUAGAGGGCAUAUCAAUUUGAUGUGCCCUCUGUUUUUUUCUCCCUUGUAAACAAAUUCUAAAAGGAAACUAUCAAAGUUAUAAAACGAAUUGAAUAUCUACCUCCCAUUUAAUGAAAUUACUUAAAAAUCUAUAUAUUAAUGUUUUAACGUAAGUAUGAUUGAUAUUGUUUGCUAAAGUUUUUUCUAUAUUCAUAGCAGGCUGUAAAGUACACAAUGUAUUGUACUUUUUUAAAUUUCUACAUAAGAAAAUUGUUACUAUAAAAUAAAAUUCGUAUCUUUGCACACAUUAUAAUAAAGAAUCUGACUAAAUAACUCUGCGGGCUUCAUUGAAUCCUAUAGGUGGAGAAUGUGUUAGAGAAUUCUGUUCUAACCUUUUUAAAUAUUAGAAAGGGAGGAAGAGGUGUAAUCUCAAAACAACUCAUAAAUUACCUAACAACACAUUCUCUGGAAUAAAUAAAGCAAAGUUAUUUAUAAGAAAUCCAUAAAACUACACACUAUUACGAUGUUGGAAAAAUCAUCAAAGAUAUAUAUUGCUGGGCACAGGGGC ...(((((((..((((((...((((.((((.....))))))))....))))))..)))))))(((....)))........(((((.....))))).......(((((((((((((((((.....))))))))))))))))).....(((((((......((((....((....))......(((....))).....))))........((((..(((((..........................(((((((....(((((..((..(((((((.((((..(((((...((((....)))).)))))....)))).)))))))))..))))).......(((((.....)))))..........)))))))......(((((((((...................(((...(((((((((.(((.((.(((...))).)).......((((((((((((.((((..(((.((((..((((((((.....))))))))..)))).))).....))))...........((.......))..))))))))))))............))).)))))))))..)))..((((........................))))........))))))))).))))).)))).))))))). (-140.26) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GCCCCUGUGCCCAGCAAUAUAUAUCUUUGAUGAUUUUUCCAACAUCGUAAUAGUGUGUAGUUUUAUGGAUUUCUUAUAAAUAACUUUGCUUUAUUUAUUCCAGAGAAUGUGUUGUUAGGUAAUUUAUGAGUUGUUUUGAGAUUACACCUCUUCCUCCCUUUCUAAUAUUUAAAAAGGUUAGAACAGAAUUCUCUAACACAUUCUCCACCUAUAGGAUUCAAUGAAGCCCGCAGAGUUAUUUAGUCAGAUUCUUUAUUAUAAUGUGUGCAAAGAUACGAAUUUUAUUUUAUAGUAACAAUUUUCUUAUGUAGAAAUUUAAAAAAGUACAAUACAUUGUGUACUUUACAGCCUGCUAUGAAUAUAGAAAAAACUUUAGCAAACAAUAUCAAUCAUACUUACGUUAAAACAUUAAUAUAUAGAUUUUUAAGUAAUUUCAUUAAAUGGGAGGUAGAUAUUCAAUUCGUUUUAUAACUUUGAUAGUUUCCUUUUAGAAUUUGUUUACAAGGGAGAAAAAAACAGAGGGCACAUCAAAUUGAUAUGCCCUCUAUUUUAUAUUUUAAGUUUAAUAAACUCCUAAAUGUGCAUUUAUGCAAAUGUCAUACCUUGCUCUUACCUUAUUUGUAAUAAUGAUAUUUCAAGAUGAAACAUUUUUA .(((.((((..(((...(((((((...(((((.((((........((((..((((((..((..((.(((..(((..(((((((((((((....((((((...((((((((((((....(((((((.((((....)))))))))))..((.(((...(((((.((.....)).)))))...))).)).......))))))))))))..((....))....))))))....)))))))))))))...))).))).))..))..(((.(((((((.......(((((((((((((((.....(((((.....)))))......((((((((........))))))))......))))))))).))))))....)))).))).)))........))))))))))..)))))))))))))))).......................(((((((.((((..((((...(((....))).))))..)))))))))))....)))..)))).))).....((((.((((((((.(((.....))).)))))))).))))........................((((((.(((((.((.(((((((((...((((.............))))..))))))))))))))))..))))))... (-134.62) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 460 148 108 166 122 pint:PI0161|5end_possible_TonB_receptor_153364..153594_POSITIVE 280 136 108 150 114 pint:PI1463|5end_fumarate_hydratase,_class_I_1385349..1385579_POSITIVE 280 540 492 113 51 pint:PI0991|5end_conserved_hypothetical_protein_915309..915539_POSITIVE 271 150 119 227 193 pint:PI2086|5end_signal_peptidase_I_2041835..2042065_POSITIVE 268 136 102 156 110 pint:PI1086|5end_pyruvate:ferredoxin_oxidoreductase_1006602..1006832_POSITIVE 268 468 423 226 181 pint:PI0321|5end_conserved_hypothetical_protein_302598..302828_POSITIVE 265 462 425 204 168 pint:PI1435|5end_D12_class_N6_adenine-specific_DNA_methyltransferase_1354559..1354789_POSITIVE 264 320 271 191 139 pint:PI1058|5end_possible_FHA_domain_protein_977577..977807_POSITIVE 263 469 421 199 154 pint:PI1639|5end_conserved_hypothetical_protein_1556725..1556955_POSITIVE 263 459 422 228 193 pint:PI0840|5end_conserved_hypothetical_protein;_possible_transposase_774227..774457_POSITIVE 262 470 423 172 116 pint:PI0466|5end_30S_ribosomal_protein_S3_435725..435955_POSITIVE 261 140 106 124 81 pint:PI1262|5end_ISPg3-related_transposase,_C-terminal_region_1183967..1184197_POSITIVE 261 460 413 69 9 pint:PI0719|5end_conserved_hypothetical_protein_653043..653273_POSITIVE 256 490 445 76 26 pint:PI1883|5end_conserved_hypothetical_protein;_possible_surface_protein_1824874..1825104_POSITIVE 254 470 424 178 134 pint:PI0859|5end_carbamoyl-phosphate_synthase,_small_subunit_793317..793547_POSITIVE 252 467 423 57 21 pint:PI1490|5end_GTP_cyclohydrolase_I_1408571..1408801_POSITIVE 252 309 261 186 125 pint:PI1172|5end_sensor_histidine_kinase_1091850..1092080_POSITIVE 252 470 421 208 167 pint:PI0262|5end_conserved_hypothetical_protein_254685..254915_POSITIVE 248 461 421 132 100 pint:PI0932|5end_conserved_hypothetical_protein;_possible_hemin_receptor_863854..864084_POSITIVE 246 462 421 220 179 pint:PI0162|5end_ADP-ribosylglycohydrolase_(ADP-ribosyl-[dinitrogen_reductase]_hydrolase)_156130..156360_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 296 470 421 102 48 pint:PI0654|3end_K+-dependent_Na+/Ca+_exchanger_related-protein_597223..597373_POSITIVE 280 136 108 104 68 pint:PI1462|3end_hypothetical_protein_1385383..1385533_POSITIVE 272 469 421 69 9 pint:PI1748|3end_guanosine-3',5'-bis(diphosphate)_3'-pyrophosphohydrolase/possible_(p)ppgpp_synthetase_II_1670922..1671072_POSITIVE 271 150 119 115 81 pint:PI2085|3end_conserved_hypothetical_protein_2041803..2041953_POSITIVE 266 465 421 129 86 pint:PI1178|3end_histidyl-tRNA_synthetase_1100564..1100714_POSITIVE 265 457 419 84 36 pint:PI1440|3end_conserved_hypothetical_protein_1363009..1363159_POSITIVE 265 462 425 135 99 pint:PI1434|3end_hypothetical_protein_1354570..1354720_POSITIVE 264 320 271 82 30 pint:PI1057|3end_hypothetical_protein_977548..977698_POSITIVE 263 459 422 131 96 pint:PI0839|3end_conserved_hypothetical_protein_774210..774360_POSITIVE 261 140 106 151 108 pint:PI1261|3end_ISPg3-related_transposase,_N-terminal_region_1184074..1184224_POSITIVE 261 460 413 66 6 pint:PI0717|3end_conserved_hypothetical_protein_653120..653270_POSITIVE 261 89 47 132 93 pint:PI0619|3end_hypothetical_protein_569572..569722_POSITIVE 252 309 261 92 31 pint:PI1171|3end_hypothetical_protein_1091836..1091986_POSITIVE 252 389 357 139 105 pint:PI0169|3end_hypothetical_protein_164036..164186_POSITIVE 246 75 40 140 108 pint:PI0031|3end_peptidylprolyl_isomerase_36131..36281_POSITIVE 238 327 281 97 55 pint:PI1983|3end_possible_xylanase_1940004..1940154_POSITIVE 238 479 431 133 93 pint:PI1649|3end_hypothetical_protein_1563441..1563591_POSITIVE 235 480 431 101 50 pint:PI1379|3end_hypothetical_protein_1302292..1302442_POSITIVE 234 469 422 78 3 pint:PI1116|3end_conserved_hypothetical_protein_1041380..1041530_POSITIVE 234 459 419 72 21 pint:PI0301|3end_probable_transposase_285982..286132_POSITIVE