Origin IGS: taaaacgcacgaaacgataacgaataggggagaaaggatacccttgatgtttattaaaacggttaattttcttattcttgctgaaagcaaattccgaaagaaaccttcagtattgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagctttattgtctttttctgtcagtcaagcaaactatcttcactaaatttctatcgttccatagcaaggtctaaaaggtgtgatttcgcagcaaaaaggttgcgaattataacttgttatgaaaaaataattggcaaatcgggaagtttattgtaactttgtcccaaatattttaagataa .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 ttatcttaaaatatttgggacaaagttacaataaacttcccgatttgccaattattttttcataacaagttataattcgcaacctttttgctgcgaaatcacaccttttagaccttgctatggaacgatagaaatttagtgaagatagtttgcttgactgacagaaaaagacaataaagctgtaaatatttttcacaagagtacctatcgtataactacctcatcatcagtgtgttataaaacctattgttttgcattccaaaagcgtaggttttacacggtaaaagcggttgttttgcatcgtaaaacagctgcttttgcaatgtcaaaaggcagttatcactttttaacggaattatttttacaatactgaaggtttctttcggaatttgctttcagcaagaataagaaaattaaccgttttaataaacatcaagggtatcctttctcccctattcgttatcgtttcgtgcgtttta Mask Tandem Repeat Region ================================================ taaaacgcacgaaacgataacgaataggggagaaaggatacccttgatgtttattaaaacggttaattttcttattcttgctgaaagcaaattccgaaagaaaccttcagtattgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagctttattgtctttttctgtcagtcaagcaaactatcttcactaaatttctatcgttccatagcaaggtctaaaaggtgtgatttcgcagcaaaaaggttgcgaattataacttgttatgaaaaaataattggcaaatcgggaagtttattgtaactttgtcccaaatattttaagataa Find is-nt database================================================ Query_seq: PI1090:PI1091|PI1090:PI1091:tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family:->->:1015841..1016319 479 taaaacgcacgaaacgataacgaataggggagaaaggatacccttgatgtttattaaaacggttaattttcttattcttgctgaaagcaaattccgaaagaaaccttcagtattgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagctttattgtctttttctgtcagtcaagcaaactatcttcactaaatttctatcgttccatagcaaggtctaaaaggtgtgatttcgcagcaaaaaggttgcgaattataacttgttatgaaaaaataattggcaaatcgggaagtttattgtaactttgtcccaaatattttaagataa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1090:PI1091|PI1090:PI1091:tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family:->->:1015841..1016319 479 taaaacgcacgaaacgataacgaataggggagaaaggatacccttgatgtttattaaaacggttaattttcttattcttgctgaaagcaaattccgaaagaaaccttcagtattgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagctttattgtctttttctgtcagtcaagcaaactatcttcactaaatttctatcgttccatagcaaggtctaaaaggtgtgatttcgcagcaaaaaggttgcgaattataacttgttatgaaaaaataattggcaaatcgggaagtttattgtaactttgtcccaaatattttaagataa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1090:PI1091|PI1090:PI1091:tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family:->->:1015841..1016319 479 taaaacgcacgaaacgataacgaataggggagaaaggatacccttgatgtttattaaaacggttaattttcttattcttgctgaaagcaaattccgaaagaaaccttcagtattgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagctttattgtctttttctgtcagtcaagcaaactatcttcactaaatttctatcgttccatagcaaggtctaaaaggtgtgatttcgcagcaaaaaggttgcgaattataacttgttatgaaaaaataattggcaaatcgggaagtttattgtaactttgtcccaaatattttaagataa Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taaaacgcacgaaacgataacgaataggggagaaaggatacccttgatgtttattaaaacggttaattttcttattcttgctgaaagcaaattccgaaagaaaccttcagtattgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagctttattgtctttttctgtcagtcaagcaaactatcttcactaaatttctatcgttccatagcaaggtctaaaaggtgtgatttcgcagcaaaaaggttgcgaattataacttgttatgaaaaaataattggcaaatcgggaagtttattgtaactttgtcccaaatattttaagataa Predict ORF larger than 30AA ================================================ Protein_Len: 33 Strand: + Start: 17 End: 115 ................ M T N R G E R I P L M F I K T V N F L I L A E S K F R K K P S V L ............................................................................................................................................................................................................................................................................................................................................................................ Protein_Len: 57 Strand: + Start: 91 End: 261 .......................................................................................... M P K E T F S I V K I I P L K S D N C L L T L Q K Q L F Y D A K Q P L L P C K T Y A F G M Q N N R F Y N T L M M R .......................................................................................................................................................................................................................... Protein_Len: 60 Strand: + Start: 272 End: 451 ............................................................................................................................................................................................................................................................................... M G T L V K N I Y S F I V F F C Q S S K L S S L N F Y R S I A R S K R C D F A A K R L R I I T C Y E K I I G K S G S L L ............................ Protein_Len: 60 Strand: - Start: 110 End: 322 ............................................................................................................. S G K S M A F A A T K R H L V V A K V T Y F R R K Q F A F C Y T K Y C V S S S T T I R Y T S K H F I N V A K N D K E T M ............................................................................................................................................................. Protein_Len: 30 Strand: - Start: 1 End: 90 L V C S V I V F L P S L I G K I N I L V T L K R I R A S L M ..................................................................................................................................................................................................................................................................................................................................................................................................... taaaacgcacgaaacgataacgaataggggagaaaggatacccttgatgtttattaaaacggttaattttcttattcttgctgaaagcaaattccgaaagaaaccttcagtattgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagctttattgtctttttctgtcagtcaagcaaactatcttcactaaatttctatcgttccatagcaaggtctaaaaggtgtgatttcgcagcaaaaaggttgcgaattataacttgttatgaaaaaataattggcaaatcgggaagtttattgtaactttgtcccaaatattttaagataa Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ PromScan Matrix: RpoD-17 Strand: + Score: 83 Start: 428 End: 457 ...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCAAATCGGGAAGTTTATTGTAACTT...................... PromScan Matrix: RpoD-17 Strand: + Score: 82 Start: 448 End: 477 ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAACTTTGTCCCAAATATTTTAAGAT.. Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taaaacgcacgaaacgataacgaataggggagaaaggatacccttgatgtttattaaaacggttaattttcttattcttgctgaaagcaaattccgaaagaaaccttcagtattgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagctttattgtctttttctgtcagtcaagcaaactatcttcactaaatttctatcgttccatagcaaggtctaaaaggtgtgatttcgcagcaaaaaggttgcgaattataacttgttatgaaaaaataattggcaaatcgggaagtttattgtaactttgtcccaaatattttaagataa Predict TransTerm conf > 70================================================ TransTerm Strand: - Conf: 100 HP_score: -11.1 Tail_Score: -4.16943 Start: 165 End: 193 Full_Region: ttttacacggtaaaa gcggttgttttgc atc gtaaaacagctgc ttttgcaatgtcaaa ....................................................................................................................................................................gcggttgttttgcatcgtaaaacagctgc.............................................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 62 HP_score: -6.6 Tail_Score: -3.48822 Start: 383 End: 404 Full_Region: TCTAAAAGGTGTGAT TTCGCAGC AAAAAG GTTGCGAA TTATAACTTGTTATG ..............................................................................................................................................................................................................................................................................................................................................................................................TTCGCAGCAAAAAGGTTGCGAA........................................................................... Find igs database================================================ Query_seq: PI1090:PI1091|PI1090:PI1091:tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family:->->:1015841..1016319 479 taaaacgcacgaaacgataacgaataggggagaaaggatacccttgatgtttattaaaacggttaattttcttattcttgctgaaagcaaattccgaaagaaaccttcagtattgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagctttattgtctttttctgtcagtcaagcaaactatcttcactaaatttctatcgttccatagcaaggtctaaaaggtgtgatttcgcagcaaaaaggttgcgaattataacttgttatgaaaaaataattggcaaatcgggaagtttattgtaactttgtcccaaatattttaagataa Intra-Species Hit: Count: 45 Min: 1 Max: 479 Len: 479 Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 0.0 bit: 950.0 Len: 479 Query Start:1 Query End:479 Subject Strand: POSITIVE Subject Start: 1 Subject End: 479 taaaacgcacgaaacgataacgaataggggagaaaggatacccttgatgtttattaaaacggttaattttcttattcttgctgaaagcaaattccgaaagaaaccttcagtattgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagctttattgtctttttctgtcagtcaagcaaactatcttcactaaatttctatcgttccatagcaaggtctaaaaggtgtgatttcgcagcaaaaaggttgcgaattataacttgttatgaaaaaataattggcaaatcgggaagtttattgtaactttgtcccaaatattttaagataa taaaacgcacgaaacgataacgaataggggagaaaggatacccttgatgtttattaaaacggttaattttcttattcttgctgaaagcaaattccgaaagaaaccttcagtattgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagctttattgtctttttctgtcagtcaagcaaactatcttcactaaatttctatcgttccatagcaaggtctaaaaggtgtgatttcgcagcaaaaaggttgcgaattataacttgttatgaaaaaataattggcaaatcgggaagtttattgtaactttgtcccaaatattttaagataa Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 191 Query Start:114 Query End:304 Subject Strand: POSITIVE Subject Start: 190 Subject End: 380 .................................................................................................................tgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagcttt............................................................................................................................................................................... .................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatcttt............................................................................................................................................................................... Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 3.0E-38 bit: 161.0 Len: 133 Query Start:113 Query End:245 Subject Strand: POSITIVE Subject Start: 143 Subject End: 275 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataa.......................................................................................................................................................................................................................................... ................................................................................................................ttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataa.......................................................................................................................................................................................................................................... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 7.0E-36 bit: 153.0 Len: 129 Query Start:113 Query End:241 Subject Strand: POSITIVE Subject Start: 193 Subject End: 321 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................................................................................. ................................................................................................................ttgtaaagataatttcgttaaaaagtgataactgcactttgacgttgcgaaagcggctgttttacgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttaggacgcaaaacaatagatttt.............................................................................................................................................................................................................................................. Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 7.0E-36 bit: 153.0 Len: 129 Query Start:113 Query End:241 Subject Strand: POSITIVE Subject Start: 81 Subject End: 209 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................................................................................. ................................................................................................................ttgtaaagataatttcgttgaaaagtggtaattgcgctttggcattgcgaaagcggctgttttgcgatgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................................................................................. HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 32 Query Start:281 Query End:312 Subject Strand: POSITIVE Subject Start: 249 Subject End: 280 ........................................................................................................................................................................................................................................................................................cttgtgaaaaatatttacagctttattgtctt....................................................................................................................................................................... ........................................................................................................................................................................................................................................................................................cttgtgaaaaatatttacagctttatagtctt....................................................................................................................................................................... Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 1.0E-34 bit: 149.0 Len: 187 Query Start:113 Query End:299 Subject Strand: POSITIVE Subject Start: 52 Subject End: 238 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttaca.................................................................................................................................................................................... ................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttaca.................................................................................................................................................................................... Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 2.0E-33 bit: 145.0 Len: 145 Query Start:113 Query End:257 Subject Strand: POSITIVE Subject Start: 201 Subject End: 345 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgat.............................................................................................................................................................................................................................. ................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgat.............................................................................................................................................................................................................................. Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 2.0E-33 bit: 145.0 Len: 145 Query Start:113 Query End:257 Subject Strand: NEGATIVE Subject Start: 239 Subject End: 383 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgat.............................................................................................................................................................................................................................. ................................................................................................................ttgtaaagataattctcttaaaaagtgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccacttttggaacgcaaaacaataggttttgtaacacactgatgat.............................................................................................................................................................................................................................. Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 2.0E-33 bit: 145.0 Len: 129 Query Start:113 Query End:241 Subject Strand: POSITIVE Subject Start: 203 Subject End: 330 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................................................................................. ................................................................................................................ttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgtttg-cgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................................................................................. Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 6.0E-33 bit: 143.0 Len: 196 Query Start:113 Query End:308 Subject Strand: NEGATIVE Subject Start: 44 Subject End: 239 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagctttattg........................................................................................................................................................................... ................................................................................................................ttgtaaaaataattccgttaaaaagcgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgataacaaggttgttaagcgttggatatgcttacgaaaaatatttacagctttattg........................................................................................................................................................................... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 3.0E-32 bit: 141.0 Len: 187 Query Start:113 Query End:299 Subject Strand: POSITIVE Subject Start: 61 Subject End: 247 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttaca.................................................................................................................................................................................... ................................................................................................................ttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttaca.................................................................................................................................................................................... Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 1.0E-31 bit: 139.0 Len: 130 Query Start:113 Query End:242 Subject Strand: NEGATIVE Subject Start: 178 Subject End: 307 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttta............................................................................................................................................................................................................................................. ................................................................................................................ttgtaaagataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttta............................................................................................................................................................................................................................................. Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 4.0E-31 bit: 137.0 Len: 141 Query Start:113 Query End:253 Subject Strand: POSITIVE Subject Start: 150 Subject End: 290 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactga.................................................................................................................................................................................................................................. ................................................................................................................ttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaacatactga.................................................................................................................................................................................................................................. Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 2.0E-30 bit: 135.0 Len: 204 Query Start:113 Query End:316 Subject Strand: NEGATIVE Subject Start: 230 Subject End: 433 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagctttattgtctttttc................................................................................................................................................................... ................................................................................................................ttgtaaagataattctcttaaaaagtgataactgcgctttgacgttgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacacgttgatgcacagttagttacataatagatactcgtgtgaaaaatatttacacctttactatctttttc................................................................................................................................................................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 6.0E-30 bit: 133.0 Len: 143 Query Start:113 Query End:255 Subject Strand: NEGATIVE Subject Start: 177 Subject End: 319 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatg................................................................................................................................................................................................................................ ................................................................................................................ttgtaaagataattcccttaaaaaaggataactgcgctttggcattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaacacgttttataacacgctgatg................................................................................................................................................................................................................................ Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 4.0E-28 bit: 127.0 Len: 144 Query Start:113 Query End:256 Subject Strand: POSITIVE Subject Start: 216 Subject End: 359 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatga............................................................................................................................................................................................................................... ................................................................................................................ttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatga............................................................................................................................................................................................................................... Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 4.0E-28 bit: 127.0 Len: 192 Query Start:113 Query End:304 Subject Strand: NEGATIVE Subject Start: 35 Subject End: 226 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagcttt............................................................................................................................................................................... ................................................................................................................ttgtaaagataattctgttaaaaactgataactgcgttttgacattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgcaatacgctgacagtaaggtggttatgcgataggtgtgcttgtgaaaaatatttacaccttt............................................................................................................................................................................... Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 4.0E-28 bit: 127.0 Len: 196 Query Start:113 Query End:308 Subject Strand: POSITIVE Subject Start: 116 Subject End: 311 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagctttattg........................................................................................................................................................................... ................................................................................................................ttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacgcattgacagcgagtaagttatacgattggtgtgcttgtgaaaaatatttacagccttattg........................................................................................................................................................................... Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 113 Query Start:129 Query End:241 Subject Strand: NEGATIVE Subject Start: 347 Subject End: 459 ................................................................................................................................gttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................................................................................. ................................................................................................................................gttaaaaagtgataactgcgctttgacattgcgaaagcgtaggttttgcgatgcaaaagcgccacttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................................................................................. Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 129 Query Start:113 Query End:241 Subject Strand: POSITIVE Subject Start: 148 Subject End: 276 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................................................................................. ................................................................................................................ttgtaaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt.............................................................................................................................................................................................................................................. Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 129 Query Start:113 Query End:241 Subject Strand: POSITIVE Subject Start: 481 Subject End: 609 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................................................................................. ................................................................................................................ttgtaaagataattctgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................................................................................. Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 2.0E-26 bit: 121.0 Len: 129 Query Start:113 Query End:241 Subject Strand: POSITIVE Subject Start: 168 Subject End: 296 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................................................................................. ................................................................................................................ttgtaaagataattctcttaaaaattgataactgcgttttgacattgcgaaagcggctgttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt.............................................................................................................................................................................................................................................. Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 4.0E-25 bit: 117.0 Len: 155 Query Start:113 Query End:267 Subject Strand: NEGATIVE Subject Start: 69 Subject End: 223 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagtta.................................................................................................................................................................................................................... ................................................................................................................ttgtaaagataattctgttaaaaactgataactgcgctttgacgttgcgaaagcggctcttttacgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgtaatacgttgatgattagatagtta.................................................................................................................................................................................................................... Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 150 Query Start:150 Query End:299 Subject Strand: POSITIVE Subject Start: 194 Subject End: 343 .....................................................................................................................................................tttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttaca.................................................................................................................................................................................... .....................................................................................................................................................tttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttaca.................................................................................................................................................................................... Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 6.0E-24 bit: 113.0 Len: 133 Query Start:113 Query End:245 Subject Strand: POSITIVE Subject Start: 113 Subject End: 245 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataa.......................................................................................................................................................................................................................................... ................................................................................................................ttgtaaagataattctgttaaaaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttataa.......................................................................................................................................................................................................................................... Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 6.0E-24 bit: 113.0 Len: 129 Query Start:113 Query End:241 Subject Strand: POSITIVE Subject Start: 170 Subject End: 298 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................................................................................. ................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt.............................................................................................................................................................................................................................................. Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 6.0E-24 bit: 113.0 Len: 137 Query Start:105 Query End:241 Subject Strand: NEGATIVE Subject Start: 97 Subject End: 233 ........................................................................................................cttcagtattgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................................................................................. ........................................................................................................cttcagttttgtaaagataattctgttaaaaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt.............................................................................................................................................................................................................................................. Subject: pint_PI0195_PI0196|epimerase/reductase:hypothetical protein|POSITIVE:POSITIVE|[188263,188574]|312 HSP 1 e-value: 6.0E-24 bit: 113.0 Len: 121 Query Start:150 Query End:270 Subject Strand: POSITIVE Subject Start: 184 Subject End: 304 .....................................................................................................................................................tttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatac................................................................................................................................................................................................................. .....................................................................................................................................................tttggcattgcgaaagcggctgttttgcatcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatacgctggtaacgaggtggttatac................................................................................................................................................................................................................. Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 2.0E-23 bit: 111.0 Len: 156 Query Start:150 Query End:305 Subject Strand: POSITIVE Subject Start: 180 Subject End: 335 .....................................................................................................................................................tttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagcttta.............................................................................................................................................................................. .....................................................................................................................................................tttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttacatcttta.............................................................................................................................................................................. Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 4.0E-22 bit: 107.0 Len: 130 Query Start:113 Query End:242 Subject Strand: NEGATIVE Subject Start: 178 Subject End: 307 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttta............................................................................................................................................................................................................................................. ................................................................................................................ttgtaaagataattttattaaaaagtggcaattgcgttttgacattgcaaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcgaaacaataggtttta............................................................................................................................................................................................................................................. Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 1.0E-21 bit: 105.0 Len: 129 Query Start:113 Query End:241 Subject Strand: NEGATIVE Subject Start: 697 Subject End: 825 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................................................................................. ................................................................................................................ttgtaaaaataattctgttaaaaagtgataactgtactttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatacaaaacaataggtttt.............................................................................................................................................................................................................................................. Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 1.0E-21 bit: 105.0 Len: 129 Query Start:113 Query End:241 Subject Strand: POSITIVE Subject Start: 146 Subject End: 274 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................................................................................. ................................................................................................................ttgtaaagataattcgttgaaaaaatgataatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................................................................................. Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 1.0E-21 bit: 105.0 Len: 205 Query Start:113 Query End:317 Subject Strand: POSITIVE Subject Start: 187 Subject End: 391 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagctttattgtctttttct.................................................................................................................................................................. ................................................................................................................ttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttacaccattgttgcctttttct.................................................................................................................................................................. Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 6.0E-21 bit: 103.0 Len: 108 Query Start:150 Query End:257 Subject Strand: POSITIVE Subject Start: 108 Subject End: 215 .....................................................................................................................................................tttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgat.............................................................................................................................................................................................................................. .....................................................................................................................................................tttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatgat.............................................................................................................................................................................................................................. Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 9.0E-20 bit: 99.6 Len: 126 Query Start:113 Query End:238 Subject Strand: POSITIVE Subject Start: 311 Subject End: 436 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggt................................................................................................................................................................................................................................................. ................................................................................................................ttgtaaagataatttctttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggt................................................................................................................................................................................................................................................. Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 3.0E-19 bit: 97.6 Len: 129 Query Start:113 Query End:241 Subject Strand: NEGATIVE Subject Start: 152 Subject End: 280 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................................................................................. ................................................................................................................ttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgtaaaacaataggtttt.............................................................................................................................................................................................................................................. Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 3.0E-19 bit: 97.6 Len: 129 Query Start:113 Query End:241 Subject Strand: NEGATIVE Subject Start: 387 Subject End: 515 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................................................................................. ................................................................................................................ttgtaaagataattctgatgaaaaatgataatttcgatttggcattgcgaaagcggctgttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................................................................................. Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 200 Query Start:113 Query End:312 Subject Strand: POSITIVE Subject Start: 258 Subject End: 457 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagctttattgtctt....................................................................................................................................................................... ................................................................................................................ttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttacagcttgattatctt....................................................................................................................................................................... Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 1.0E-18 bit: 95.6 Len: 112 Query Start:130 Query End:241 Subject Strand: POSITIVE Subject Start: 120 Subject End: 231 .................................................................................................................................ttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................................................................................. .................................................................................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................................................................................. Subject: pint_PI1521_PI1522|hypothetical protein:thioredoxin M|POSITIVE:POSITIVE|[1441522,1441785]|264 HSP 1 e-value: 8.0E-17 bit: 89.7 Len: 101 Query Start:207 Query End:307 Subject Strand: POSITIVE Subject Start: 1 Subject End: 101 ..............................................................................................................................................................................................................aacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagctttatt............................................................................................................................................................................ ..............................................................................................................................................................................................................aacctacgcttttggaacgcaaaacaataggttttgtaatacgttgataataaacaagttaaacaatagttactcttgtgaaaaatatttacagatttatt............................................................................................................................................................................ Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 136 Query Start:113 Query End:248 Subject Strand: NEGATIVE Subject Start: 404 Subject End: 539 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacac....................................................................................................................................................................................................................................... ................................................................................................................ttgtaaagataattacattgaaaattgataatttcgttttgacgttgcgaaagcggctgttttgcgaggtaaaacctacgcttttgccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaacac....................................................................................................................................................................................................................................... Subject: pint_PI1370_PI1371|alkyl hydroperoxide reductase, subunit F:hypothetical protein|POSITIVE:POSITIVE|[1292237,1292498]|262 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 100 Query Start:113 Query End:212 Subject Strand: POSITIVE Subject Start: 163 Subject End: 262 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaaccta........................................................................................................................................................................................................................................................................... ................................................................................................................ttgtaaagataattctcttaaaaagtgataactgcgctttggcattgcaaaagcggctattttgcatcgcaaaacagccgcttttactgtgtaaaaccta........................................................................................................................................................................................................................................................................... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 1.0E-15 bit: 85.7 Len: 151 Query Start:150 Query End:300 Subject Strand: NEGATIVE Subject Start: 273 Subject End: 423 .....................................................................................................................................................tttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacag................................................................................................................................................................................... .....................................................................................................................................................tttgacgttgcgaaagcagctcttttgcaacgcaaaacctatgcttttaccgtgcaaaacagccgcttttaggatgcaaaacaataggttttgtaacgcactgatgattaggctgttatgcgaaaatttttcttgtgaaaaatatttacag................................................................................................................................................................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 129 Query Start:113 Query End:241 Subject Strand: POSITIVE Subject Start: 93 Subject End: 221 ................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.............................................................................................................................................................................................................................................. ................................................................................................................ttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggtttt.............................................................................................................................................................................................................................................. Subject: pint_PI2056_PI2057|conserved hypothetical protein:conserved hypothetical protein; possible metal-dependent membrane protease|POSITIVE:POSITIVE|[2014489,2015078]|590 HSP 1 e-value: 3.0E-10 bit: 67.9 Len: 110 Query Start:150 Query End:259 Subject Strand: POSITIVE Subject Start: 380 Subject End: 489 .....................................................................................................................................................tttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatga............................................................................................................................................................................................................................ .....................................................................................................................................................tttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaatacactggtgatga............................................................................................................................................................................................................................ Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAAACGCACGAAACGAUAACGAAUAGGGGAGAAAGGAUACCCUUGAUGUUUAUUAAAACGGUUAAUUUUCUUAUUCUUGCUGAAAGCAAAUUCCGAAAGAAACCUUCAGUAUUGUAAAAAUAAUUCCGUUAAAAAGUGAUAACUGCCUUUUGACAUUGCAAAAGCAGCUGUUUUACGAUGCAAAACAACCGCUUUUACCGUGUAAAACCUACGCUUUUGGAAUGCAAAACAAUAGGUUUUAUAACACACUGAUGAUGAGGUAGUUAUACGAUAGGUACUCUUGUGAAAAAUAUUUACAGCUUUAUUGUCUUUUUCUGUCAGUCAAGCAAACUAUCUUCACUAAAUUUCUAUCGUUCCAUAGCAAGGUCUAAAAGGUGUGAUUUCGCAGCAAAAAGGUUGCGAAUUAUAACUUGUUAUGAAAAAAUAAUUGGCAAAUCGGGAAGUUUAUUGUAACUUUGUCCCAAAUAUUUUAAGAUAA ......((.((((((((((..(((((((..((.((((....))))..(((((....))))).....))..))))))).(((((((.(....((.(....).))).))))))).......................(((((((((((((((....((((..((((((.(.((((((.......)))))).).))))))...((((((((((((...(((((.....)))))...))))))))...))))...))))..))))))))))...(((((.......((((((.....))))))((((.((((.(.......).)))).))))...))))).))))).......))))))).(((((((((..........(((((((.((((((......))))))))))))).))))))))).........))))).....((((((((......))))...))))................ (-111.10) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UUAUCUUAAAAUAUUUGGGACAAAGUUACAAUAAACUUCCCGAUUUGCCAAUUAUUUUUUCAUAACAAGUUAUAAUUCGCAACCUUUUUGCUGCGAAAUCACACCUUUUAGACCUUGCUAUGGAACGAUAGAAAUUUAGUGAAGAUAGUUUGCUUGACUGACAGAAAAAGACAAUAAAGCUGUAAAUAUUUUUCACAAGAGUACCUAUCGUAUAACUACCUCAUCAUCAGUGUGUUAUAAAACCUAUUGUUUUGCAUUCCAAAAGCGUAGGUUUUACACGGUAAAAGCGGUUGUUUUGCAUCGUAAAACAGCUGCUUUUGCAAUGUCAAAAGGCAGUUAUCACUUUUUAACGGAAUUAUUUUUACAAUACUGAAGGUUUCUUUCGGAAUUUGCUUUCAGCAAGAAUAAGAAAAUUAACCGUUUUAAUAAACAUCAAGGGUAUCCUUUCUCCCCUAUUCGUUAUCGUUUCGUGCGUUUUA .....((((((...((((((...((((......))))))))))................................((((((.(......).))))))........)))))).....((.((((((((((((....(((((.(((........))).)))))..((((((.(((.......))).....))))))..(((..(((((...((((((((.(((..........((((...(((((((((.(((((........)))))))))))))))))).(((((((((((((((((((...))))))))))))))))))).........))).)))))).)).((..(((((....((((((......(((((((...)))))))..(((((.....))))).....))))))...)))))..))..........)))))..))).............))))))))))))))...... (-112.60) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 833 240 191 125 76 pint:PI0851|5end_hypothetical_protein_784310..784540_POSITIVE 833 240 191 125 76 pint:PI0841|5end_hypothetical_protein_775406..775636_POSITIVE 833 240 191 70 21 pint:PI0200|5end_hypothetical_protein_191545..191775_POSITIVE 833 240 191 70 21 pint:PI0182|5end_hypothetical_protein_174093..174323_POSITIVE 807 240 191 81 32 pint:PI0755|5end_hypothetical_protein_686691..686921_POSITIVE 805 240 191 147 98 pint:PI0157|5end_hypothetical_protein_151185..151415_POSITIVE 771 230 181 225 176 pint:PI0159|5end_hypothetical_protein_151273..151503_POSITIVE 762 240 191 224 175 pint:PI2111|5end_conserved_hypothetical_protein_2062771..2063001_POSITIVE 725 240 191 98 49 pint:PI1694|5end_hypothetical_protein_1609717..1609947_POSITIVE 723 240 191 70 21 pint:PI1733|5end_hypothetical_protein_1652160..1652390_POSITIVE 721 240 191 98 49 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 721 240 191 55 6 pint:PI1905|5end_hypothetical_protein_1847628..1847858_POSITIVE 721 240 191 98 49 pint:PI1346|5end_hypothetical_protein_1260814..1261044_POSITIVE 721 240 191 59 10 pint:PI1339|5end_hypothetical_protein_1256671..1256901_POSITIVE 721 240 191 86 37 pint:PI1129|5end_hypothetical_protein_1055377..1055607_POSITIVE 721 240 191 224 175 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 721 240 191 229 180 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 721 240 191 59 10 pint:PI0104|5end_hypothetical_protein_99105..99335_POSITIVE 721 240 191 70 21 pint:PI0061|5end_hypothetical_protein_60500..60730_POSITIVE 721 240 191 147 98 pint:PI0055|5end_hypothetical_protein_54815..55045_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 721 240 191 140 91 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 721 240 191 53 4 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 721 240 191 53 4 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE 721 240 191 81 32 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 692 240 191 140 91 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 653 240 192 49 1 pint:PI1051|3end_hypothetical_protein_970228..970378_POSITIVE 644 240 191 81 32 pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE 642 217 171 151 105 pint:PI0182|3end_hypothetical_protein_174277..174427_POSITIVE 626 210 162 150 102 pint:PI0158|3end_hypothetical_protein_151298..151448_POSITIVE 624 240 194 47 1 pint:PI0669|3end_hypothetical_protein_611147..611297_POSITIVE 591 209 162 149 102 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 556 207 162 151 106 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 552 209 162 149 102 pint:PI0004|3end_hypothetical_protein_6389..6539_POSITIVE 537 260 213 53 6 pint:PI1813|3end_hypothetical_protein_1753086..1753236_POSITIVE 530 237 191 151 105 pint:PI1356|3end_hypothetical_protein_1273340..1273490_POSITIVE 521 241 208 34 1 pint:PI1391|3end_hypothetical_protein_1311694..1311844_POSITIVE 519 209 162 149 102 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 495 209 162 149 102 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 495 209 162 149 102 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 495 210 161 150 101 pint:PI0551|3end_hypothetical_protein_502683..502833_POSITIVE