Origin IGS: tagatactaaagagagttgtaagtacaagaatgcacagttaaaaaggtatttaagtgaattggaaaagactcttgcctccttcaattaatgttaattcggtataagaaaacaggttgagtgggctgtcttgtaggttctttcagcaagcctctctttaataaaacaatgagaactcttctatttaaatatgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatctttgttgctttcttttcgtcgaaaaccaacgttagttcggggtaagaatttgcccgagatacttcgctttttaaattataagcatatttttaaaagtaggtgagcaagctatttgacaagtaatatagctaagtgcttctatctgtcaaagacagattctttcgtta .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 taacgaaagaatctgtctttgacagatagaagcacttagctatattacttgtcaaatagcttgctcacctacttttaaaaatatgcttataatttaaaaagcgaagtatctcgggcaaattcttaccccgaactaacgttggttttcgacgaaaagaaagcaacaaagatgtaaatatttttcacaagggaaactattgcataactatctatacatcaatgtattacaaaacctattgttttgcattccaaaagcgtaggttttacacgataaaagcggctgttttgcgttgcaaaacagccactttcgcaatgtcaaagcgcagttattactttttaacggaattatttttacatatttaaatagaagagttctcattgttttattaaagagaggcttgctgaaagaacctacaagacagcccactcaacctgttttcttataccgaattaacattaattgaaggaggcaagagtcttttccaattcacttaaatacctttttaactgtgcattcttgtacttacaactctctttagtatcta Mask Tandem Repeat Region ================================================ tagatactaaagagagttgtaagtacaagaatgcacagttaaaaaggtatttaagtgaattggaaaagactcttgcctccttcaattaatgttaattcggtataagaaaacaggttgagtgggctgtcttgtaggttctttcagcaagcctctctttaataaaacaatgagaactcttctatttaaatatgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatctttgttgctttcttttcgtcgaaaaccaacgttagttcggggtaagaatttgcccgagatacttcgctttttaaattataagcatatttttaaaagtaggtgagcaagctatttgacaagtaatatagctaagtgcttctatctgtcaaagacagattctttcgtta Find is-nt database================================================ Query_seq: PI1044:PI1045|PI1044:PI1045:excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein:->->:964700..965243 544 tagatactaaagagagttgtaagtacaagaatgcacagttaaaaaggtatttaagtgaattggaaaagactcttgcctccttcaattaatgttaattcggtataagaaaacaggttgagtgggctgtcttgtaggttctttcagcaagcctctctttaataaaacaatgagaactcttctatttaaatatgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatctttgttgctttcttttcgtcgaaaaccaacgttagttcggggtaagaatttgcccgagatacttcgctttttaaattataagcatatttttaaaagtaggtgagcaagctatttgacaagtaatatagctaagtgcttctatctgtcaaagacagattctttcgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI1044:PI1045|PI1044:PI1045:excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein:->->:964700..965243 544 tagatactaaagagagttgtaagtacaagaatgcacagttaaaaaggtatttaagtgaattggaaaagactcttgcctccttcaattaatgttaattcggtataagaaaacaggttgagtgggctgtcttgtaggttctttcagcaagcctctctttaataaaacaatgagaactcttctatttaaatatgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatctttgttgctttcttttcgtcgaaaaccaacgttagttcggggtaagaatttgcccgagatacttcgctttttaaattataagcatatttttaaaagtaggtgagcaagctatttgacaagtaatatagctaagtgcttctatctgtcaaagacagattctttcgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI1044:PI1045|PI1044:PI1045:excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein:->->:964700..965243 544 tagatactaaagagagttgtaagtacaagaatgcacagttaaaaaggtatttaagtgaattggaaaagactcttgcctccttcaattaatgttaattcggtataagaaaacaggttgagtgggctgtcttgtaggttctttcagcaagcctctctttaataaaacaatgagaactcttctatttaaatatgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatctttgttgctttcttttcgtcgaaaaccaacgttagttcggggtaagaatttgcccgagatacttcgctttttaaattataagcatatttttaaaagtaggtgagcaagctatttgacaagtaatatagctaagtgcttctatctgtcaaagacagattctttcgtta Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 tagatactaaagagagttgtaagtacaagaatgcacagttaaaaaggtatttaagtgaattggaaaagactcttgcctccttcaattaatgttaattcggtataagaaaacaggttgagtgggctgtcttgtaggttctttcagcaagcctctctttaataaaacaatgagaactcttctatttaaatatgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatctttgttgctttcttttcgtcgaaaaccaacgttagttcggggtaagaatttgcccgagatacttcgctttttaaattataagcatatttttaaaagtaggtgagcaagctatttgacaagtaatatagctaagtgcttctatctgtcaaagacagattctttcgtta Predict ORF larger than 30AA ================================================ Protein_Len: 60 Strand: + Start: 119 End: 337 ...................................................................................................................... M G C L V G S F S K P L F N K T M R T L L F K Y V K I I P L K S N N C A L T L R K W L F C N A K Q P L L S C K T Y A F G ............................................................................................................................................................................................................... Protein_Len: 37 Strand: + Start: 367 End: 477 .............................................................................................................................................................................................................................................................................................................................................................................. M F T S L L L S F R R K P T L V R G K N L P E I L R F L N Y K H I F K S R ................................................................... Protein_Len: 60 Strand: - Start: 186 End: 437 ......................................................................................................................................................................................... L V A A K I T Y F R R K Q F A F C Y T K Y Y M S T Y I T I C Y N G K H F I N V D K N S E K R R F G V N T R P L F K G S M ........................................................................................................... Protein_Len: 57 Strand: - Start: 85 End: 255 .................................................................................... N I N I R Y L F V P Q T P Q R T P E K L L G R K L L V I L V R R N L Y T F I I G N F L L L Q A K V N R F H S N Q M ................................................................................................................................................................................................................................................................................................. tagatactaaagagagttgtaagtacaagaatgcacagttaaaaaggtatttaagtgaattggaaaagactcttgcctccttcaattaatgttaattcggtataagaaaacaggttgagtgggctgtcttgtaggttctttcagcaagcctctctttaataaaacaatgagaactcttctatttaaatatgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatctttgttgctttcttttcgtcgaaaaccaacgttagttcggggtaagaatttgcccgagatacttcgctttttaaattataagcatatttttaaaagtaggtgagcaagctatttgacaagtaatatagctaagtgcttctatctgtcaaagacagattctttcgtta Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ tagatactaaagagagttgtaagtacaagaatgcacagttaaaaaggtatttaagtgaattggaaaagactcttgcctccttcaattaatgttaattcggtataagaaaacaggttgagtgggctgtcttgtaggttctttcagcaagcctctctttaataaaacaatgagaactcttctatttaaatatgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatctttgttgctttcttttcgtcgaaaaccaacgttagttcggggtaagaatttgcccgagatacttcgctttttaaattataagcatatttttaaaagtaggtgagcaagctatttgacaagtaatatagctaagtgcttctatctgtcaaagacagattctttcgtta Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 100 HP_score: -18.3 Tail_Score: -4.50976 Start: 241 End: 269 Full_Region: TTTGACATTGCGAAA GTGGCTGTTTTGC AAC GCAAAACAGCCGC TTTTATCGTGTAAAA ................................................................................................................................................................................................................................................GTGGCTGTTTTGCAACGCAAAACAGCCGC................................................................................................................................................................................................................................................................................... TransTerm Strand: - Conf: 100 HP_score: -16.1 Tail_Score: -3.59262 Start: 241 End: 269 Full_Region: ttttacacgataaaa gcggctgttttgc gtt gcaaaacagccac tttcgcaatgtcaaa ................................................................................................................................................................................................................................................gcggctgttttgcgttgcaaaacagccac................................................................................................................................................................................................................................................................................... Find igs database================================================ Query_seq: PI1044:PI1045|PI1044:PI1045:excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein:->->:964700..965243 544 tagatactaaagagagttgtaagtacaagaatgcacagttaaaaaggtatttaagtgaattggaaaagactcttgcctccttcaattaatgttaattcggtataagaaaacaggttgagtgggctgtcttgtaggttctttcagcaagcctctctttaataaaacaatgagaactcttctatttaaatatgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatctttgttgctttcttttcgtcgaaaaccaacgttagttcggggtaagaatttgcccgagatacttcgctttttaaattataagcatatttttaaaagtaggtgagcaagctatttgacaagtaatatagctaagtgcttctatctgtcaaagacagattctttcgtta Intra-Species Hit: Count: 51 Min: 1 Max: 544 Len: 544 Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 0.0 bit: 1078.0 Len: 544 Query Start:1 Query End:544 Subject Strand: POSITIVE Subject Start: 1 Subject End: 544 tagatactaaagagagttgtaagtacaagaatgcacagttaaaaaggtatttaagtgaattggaaaagactcttgcctccttcaattaatgttaattcggtataagaaaacaggttgagtgggctgtcttgtaggttctttcagcaagcctctctttaataaaacaatgagaactcttctatttaaatatgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatctttgttgctttcttttcgtcgaaaaccaacgttagttcggggtaagaatttgcccgagatacttcgctttttaaattataagcatatttttaaaagtaggtgagcaagctatttgacaagtaatatagctaagtgcttctatctgtcaaagacagattctttcgtta tagatactaaagagagttgtaagtacaagaatgcacagttaaaaaggtatttaagtgaattggaaaagactcttgcctccttcaattaatgttaattcggtataagaaaacaggttgagtgggctgtcttgtaggttctttcagcaagcctctctttaataaaacaatgagaactcttctatttaaatatgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatctttgttgctttcttttcgtcgaaaaccaacgttagttcggggtaagaatttgcccgagatacttcgctttttaaattataagcatatttttaaaagtaggtgagcaagctatttgacaagtaatatagctaagtgcttctatctgtcaaagacagattctttcgtta Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 1.0E-46 bit: 188.0 Len: 191 Query Start:190 Query End:380 Subject Strand: POSITIVE Subject Start: 114 Subject End: 304 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatcttt.................................................................................................................................................................... .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataacacactgatgatgaggtagttatacgataggtactcttgtgaaaaatatttacagcttt.................................................................................................................................................................... Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 5.0E-43 bit: 176.0 Len: 133 Query Start:190 Query End:322 Subject Strand: POSITIVE Subject Start: 144 Subject End: 276 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaat.............................................................................................................................................................................................................................. .............................................................................................................................................................................................tgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataat.............................................................................................................................................................................................................................. Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 8.0E-42 bit: 172.0 Len: 191 Query Start:190 Query End:380 Subject Strand: POSITIVE Subject Start: 82 Subject End: 272 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatcttt.................................................................................................................................................................... .............................................................................................................................................................................................tgtaaagataatttcgttgaaaagtggtaattgcgctttggcattgcgaaagcggctgttttgcgatgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatgtgttgatacacagattgttatttaatagtggtgcttgtgaaaaatatttacagcttt.................................................................................................................................................................... Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 8.0E-39 bit: 163.0 Len: 186 Query Start:190 Query End:375 Subject Strand: POSITIVE Subject Start: 53 Subject End: 238 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttaca......................................................................................................................................................................... .............................................................................................................................................................................................tgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttagatagttacgtaataggtaagcttgtgaaaaatatttaca......................................................................................................................................................................... Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 3.0E-38 bit: 161.0 Len: 141 Query Start:190 Query End:330 Subject Strand: NEGATIVE Subject Start: 98 Subject End: 238 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgat...................................................................................................................................................................................................................... .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagcgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgat...................................................................................................................................................................................................................... Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 3.0E-38 bit: 161.0 Len: 133 Query Start:190 Query End:322 Subject Strand: POSITIVE Subject Start: 204 Subject End: 335 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaat.............................................................................................................................................................................................................................. .............................................................................................................................................................................................tgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctgttt-gcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaat.............................................................................................................................................................................................................................. Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 1.0E-37 bit: 159.0 Len: 128 Query Start:190 Query End:317 Subject Strand: NEGATIVE Subject Start: 179 Subject End: 306 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggtttt................................................................................................................................................................................................................................... .............................................................................................................................................................................................tgtaaagataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt................................................................................................................................................................................................................................... Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 5.0E-37 bit: 157.0 Len: 191 Query Start:190 Query End:380 Subject Strand: NEGATIVE Subject Start: 242 Subject End: 432 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatcttt.................................................................................................................................................................... .............................................................................................................................................................................................tgtaaagataattctcttaaaaagtgataactgcgctttgacgttgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaacacgttgatgcacagttagttacataatagatactcgtgtgaaaaatatttacaccttt.................................................................................................................................................................... Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 2.0E-36 bit: 155.0 Len: 150 Query Start:226 Query End:375 Subject Strand: NEGATIVE Subject Start: 49 Subject End: 198 .................................................................................................................................................................................................................................tttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttaca......................................................................................................................................................................... .................................................................................................................................................................................................................................tttggcattgcgaaagcggctgttttgcaacgcaaaacagccgcttttgccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgcaatgtgttgataacgagttagttatgtaatatctttgcttgtgaaaaatatttaca......................................................................................................................................................................... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 3.0E-35 bit: 151.0 Len: 140 Query Start:190 Query End:329 Subject Strand: POSITIVE Subject Start: 194 Subject End: 333 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattga....................................................................................................................................................................................................................... .............................................................................................................................................................................................tgtaaagataatttcgttaaaaagtgataactgcactttgacgttgcgaaagcggctgttttacgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttaggacgcaaaacaatagattttgtaatgcattga....................................................................................................................................................................................................................... Subject: pint_PI1981_PI1982|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1938199,1938578]|380 HSP 1 e-value: 1.0E-34 bit: 149.0 Len: 103 Query Start:226 Query End:328 Subject Strand: POSITIVE Subject Start: 183 Subject End: 285 .................................................................................................................................................................................................................................tttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattg........................................................................................................................................................................................................................ .................................................................................................................................................................................................................................tttgacattgcgaaagcggctgttttgcatttcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattg........................................................................................................................................................................................................................ Subject: pint_PI1958_PI1959|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1917430,1917847]|418 HSP 1 e-value: 1.0E-34 bit: 149.0 Len: 103 Query Start:226 Query End:328 Subject Strand: POSITIVE Subject Start: 221 Subject End: 323 .................................................................................................................................................................................................................................tttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattg........................................................................................................................................................................................................................ .................................................................................................................................................................................................................................tttgacattgcaaaagcggctgttttgcattgcaaaacagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttataatatattg........................................................................................................................................................................................................................ HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 36 Query Start:238 Query End:273 Subject Strand: NEGATIVE Subject Start: 232 Subject End: 267 .............................................................................................................................................................................................................................................aaagtggctgttttgcaacgcaaaacagccgctttt............................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................aaagcggctgttttgcaatgcaaaacagccgctttt............................................................................................................................................................................................................................................................................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 5.0E-34 bit: 147.0 Len: 186 Query Start:190 Query End:375 Subject Strand: NEGATIVE Subject Start: 133 Subject End: 318 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttaca......................................................................................................................................................................... .............................................................................................................................................................................................tgtaaagataattcccttaaaaaaggataactgcgctttggcattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaacacgttttataacacgctgatgtatagatagttaccgaacagttatgcttgtgaaaaatatttaca......................................................................................................................................................................... Subject: pint_PI0854_PI0855|MiaB-like tRNA modifying enzyme:hypothetical protein|POSITIVE:POSITIVE|[788060,789233]|1174 HSP 1 e-value: 2.0E-33 bit: 145.0 Len: 129 Query Start:247 Query End:375 Subject Strand: POSITIVE Subject Start: 801 Subject End: 929 ......................................................................................................................................................................................................................................................gttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttaca......................................................................................................................................................................... ......................................................................................................................................................................................................................................................gttttgcaacgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttataatatgttgataaacagaaagttatgcgatagttgcatctgtgaaaaatatttaca......................................................................................................................................................................... Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 1.0E-31 bit: 139.0 Len: 186 Query Start:190 Query End:375 Subject Strand: POSITIVE Subject Start: 151 Subject End: 336 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttaca......................................................................................................................................................................... .............................................................................................................................................................................................tgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaacatactgacgtatagagtgttatgcgataattatgcctgtaaaaaatatttaca......................................................................................................................................................................... Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 5.0E-31 bit: 137.0 Len: 133 Query Start:190 Query End:322 Subject Strand: POSITIVE Subject Start: 171 Subject End: 303 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaat.............................................................................................................................................................................................................................. .............................................................................................................................................................................................tgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat.............................................................................................................................................................................................................................. Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 2.0E-30 bit: 135.0 Len: 208 Query Start:190 Query End:397 Subject Strand: NEGATIVE Subject Start: 15 Subject End: 222 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatctttgttgctttcttttcgtc................................................................................................................................................... .............................................................................................................................................................................................tgtaaagataattctgttaaaaactgataactgcgctttgacgttgcgaaagcggctcttttacgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgtaatacgttgatgattagatagttaagcaatagatatatgtgcgaaaaatatttacacatttattactttcttttcgtc................................................................................................................................................... Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 7.0E-30 bit: 133.0 Len: 191 Query Start:190 Query End:380 Subject Strand: POSITIVE Subject Start: 202 Subject End: 392 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatcttt.................................................................................................................................................................... .............................................................................................................................................................................................tgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggttttataactctctgatgattagagagttaagcaacagttgaacttgcgaaaaatatttacaccttt.................................................................................................................................................................... Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 7.0E-30 bit: 133.0 Len: 135 Query Start:190 Query End:324 Subject Strand: NEGATIVE Subject Start: 91 Subject End: 225 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatac............................................................................................................................................................................................................................ .............................................................................................................................................................................................tgtaaagataattctgttaaaaactgataactgcgttttgacattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgcaatac............................................................................................................................................................................................................................ Subject: pint_PI0948_PI0949|hypothetical protein:endonuclease|POSITIVE:POSITIVE|[882039, 882403]|365 HSP 1 e-value: 7.0E-30 bit: 133.0 Len: 155 Query Start:226 Query End:380 Subject Strand: POSITIVE Subject Start: 180 Subject End: 334 .................................................................................................................................................................................................................................tttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatcttt.................................................................................................................................................................... .................................................................................................................................................................................................................................tttggcattgcgaaagcggctgttttgcatcgcaaaacagccgctttgaccgtgtaaaacctacgcttttacaatgcaaaacaataggttttgcattgcgttgataatgagaatgttatacaataggtattcttgtgaaaaatatttacatcttt.................................................................................................................................................................... Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 3.0E-29 bit: 131.0 Len: 114 Query Start:205 Query End:318 Subject Strand: NEGATIVE Subject Start: 346 Subject End: 459 ............................................................................................................................................................................................................gttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttg.................................................................................................................................................................................................................................. ............................................................................................................................................................................................................gttaaaaagtgataactgcgctttgacattgcgaaagcgtaggttttgcgatgcaaaagcgccacttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttg.................................................................................................................................................................................................................................. Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 3.0E-29 bit: 131.0 Len: 186 Query Start:190 Query End:375 Subject Strand: POSITIVE Subject Start: 149 Subject End: 334 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttaca......................................................................................................................................................................... .............................................................................................................................................................................................tgtaaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacattgaagcatagcaagttacacaacagttacacctgcgaaaaatatttaca......................................................................................................................................................................... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 3.0E-29 bit: 131.0 Len: 186 Query Start:190 Query End:375 Subject Strand: POSITIVE Subject Start: 62 Subject End: 247 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttaca......................................................................................................................................................................... .............................................................................................................................................................................................tgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaacacattgataattaaagagttaaacaatagatactcttatgaaaaatatttaca......................................................................................................................................................................... Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 1.0E-28 bit: 129.0 Len: 113 Query Start:206 Query End:318 Subject Strand: POSITIVE Subject Start: 120 Subject End: 232 .............................................................................................................................................................................................................ttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttg.................................................................................................................................................................................................................................. .............................................................................................................................................................................................................ttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg.................................................................................................................................................................................................................................. Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 1.0E-28 bit: 129.0 Len: 133 Query Start:190 Query End:322 Subject Strand: POSITIVE Subject Start: 482 Subject End: 614 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaat.............................................................................................................................................................................................................................. .............................................................................................................................................................................................tgtaaagataattctgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaataggttttgtaat.............................................................................................................................................................................................................................. Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 4.0E-28 bit: 127.0 Len: 220 Query Start:177 Query End:396 Subject Strand: POSITIVE Subject Start: 101 Subject End: 320 ................................................................................................................................................................................ttctatttaaatatgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatctttgttgctttcttttcgt.................................................................................................................................................... ................................................................................................................................................................................ttctgtttaattttgtaaagataattctgttaaaaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttataatgcgttgatggttagatagttaagtaataattatctttacgaaaaatatttacacctttattaccttcttttcgt.................................................................................................................................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 4.0E-28 bit: 127.0 Len: 140 Query Start:190 Query End:329 Subject Strand: POSITIVE Subject Start: 94 Subject End: 233 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattga....................................................................................................................................................................................................................... .............................................................................................................................................................................................tgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttgcaatacgttga....................................................................................................................................................................................................................... Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 7.0E-27 bit: 123.0 Len: 154 Query Start:206 Query End:359 Subject Strand: POSITIVE Subject Start: 233 Subject End: 386 .............................................................................................................................................................................................................ttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttccctt......................................................................................................................................................................................... .............................................................................................................................................................................................................ttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatgaacagatggttaggcaacagttaccctt......................................................................................................................................................................................... Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 7.0E-27 bit: 123.0 Len: 150 Query Start:226 Query End:375 Subject Strand: POSITIVE Subject Start: 183 Subject End: 332 .................................................................................................................................................................................................................................tttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttaca......................................................................................................................................................................... .................................................................................................................................................................................................................................tttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgcaaagtcttgatagtgagatagttatgcaatggttacgcttgtgaaaaatatttaca......................................................................................................................................................................... Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 3.0E-26 bit: 121.0 Len: 129 Query Start:190 Query End:318 Subject Strand: POSITIVE Subject Start: 117 Subject End: 245 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttg.................................................................................................................................................................................................................................. .............................................................................................................................................................................................tgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg.................................................................................................................................................................................................................................. Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 1.0E-25 bit: 119.0 Len: 100 Query Start:226 Query End:325 Subject Strand: NEGATIVE Subject Start: 225 Subject End: 324 .................................................................................................................................................................................................................................tttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaataca........................................................................................................................................................................................................................... .................................................................................................................................................................................................................................tttggcattgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacacttttggaatgcaaaacaataggttttataataca........................................................................................................................................................................................................................... Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 1.0E-25 bit: 119.0 Len: 128 Query Start:226 Query End:353 Subject Strand: POSITIVE Subject Start: 254 Subject End: 381 .................................................................................................................................................................................................................................tttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtt............................................................................................................................................................................................... .................................................................................................................................................................................................................................tttggcattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttacaatacgttgatatacagattgttatacaatagtt............................................................................................................................................................................................... Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 2.0E-24 bit: 115.0 Len: 150 Query Start:226 Query End:375 Subject Strand: POSITIVE Subject Start: 194 Subject End: 343 .................................................................................................................................................................................................................................tttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttaca......................................................................................................................................................................... .................................................................................................................................................................................................................................tttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgcattggtgatgagatagttacacaatagacacacttgtgaaaaatatttaca......................................................................................................................................................................... Subject: pint_PI1324_PI1325|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1243086,1243554]|469 HSP 1 e-value: 2.0E-24 bit: 115.0 Len: 186 Query Start:190 Query End:375 Subject Strand: NEGATIVE Subject Start: 204 Subject End: 389 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttaca......................................................................................................................................................................... .............................................................................................................................................................................................tgtaaaaataattctgttaaaaagtgataactgcactttggcattgtaaaagcggctgttttgcatcgcaaaacagccgcttttggctggtaaaagagccgcttttacaatgtaaaacaataggttttgtaattcgttgataattagtttgttaggcaacagttatgtttgtgaaaaatatttaca......................................................................................................................................................................... Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 2.0E-24 bit: 115.0 Len: 142 Query Start:190 Query End:331 Subject Strand: NEGATIVE Subject Start: 241 Subject End: 382 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatg..................................................................................................................................................................................................................... .............................................................................................................................................................................................tgtaaagataattctcttaaaaagtgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccacttttggaacgcaaaacaataggttttgtaacacactgatg..................................................................................................................................................................................................................... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 7.0E-24 bit: 113.0 Len: 141 Query Start:190 Query End:330 Subject Strand: NEGATIVE Subject Start: 84 Subject End: 224 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgat...................................................................................................................................................................................................................... .............................................................................................................................................................................................tgtaaagataattctgttaaaaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgcaatgcattgat...................................................................................................................................................................................................................... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 7.0E-24 bit: 113.0 Len: 133 Query Start:190 Query End:322 Subject Strand: POSITIVE Subject Start: 169 Subject End: 301 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaat.............................................................................................................................................................................................................................. .............................................................................................................................................................................................tgtaaagataattctcttaaaaattgataactgcgttttgacattgcgaaagcggctgttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat.............................................................................................................................................................................................................................. Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 3.0E-23 bit: 111.0 Len: 128 Query Start:226 Query End:353 Subject Strand: POSITIVE Subject Start: 49 Subject End: 176 .................................................................................................................................................................................................................................tttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtt............................................................................................................................................................................................... .................................................................................................................................................................................................................................tttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgatagaaagagagttatacaatagtt............................................................................................................................................................................................... Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 4.0E-22 bit: 107.0 Len: 142 Query Start:181 Query End:322 Subject Strand: NEGATIVE Subject Start: 692 Subject End: 833 ....................................................................................................................................................................................atttaaatatgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaat.............................................................................................................................................................................................................................. ....................................................................................................................................................................................atttaattttgtaaaaataattctgttaaaaagtgataactgtactttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatacaaaacaataggttttgtaat.............................................................................................................................................................................................................................. Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 2.0E-21 bit: 105.0 Len: 133 Query Start:190 Query End:322 Subject Strand: POSITIVE Subject Start: 312 Subject End: 444 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaat.............................................................................................................................................................................................................................. .............................................................................................................................................................................................tgtaaagataatttctttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtcttgtaat.............................................................................................................................................................................................................................. Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 6.0E-21 bit: 103.0 Len: 132 Query Start:190 Query End:321 Subject Strand: NEGATIVE Subject Start: 148 Subject End: 279 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaa............................................................................................................................................................................................................................... .............................................................................................................................................................................................tgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgtaaaacaataggttttgtaa............................................................................................................................................................................................................................... Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 2.0E-17 bit: 91.7 Len: 186 Query Start:190 Query End:375 Subject Strand: POSITIVE Subject Start: 259 Subject End: 444 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttaca......................................................................................................................................................................... .............................................................................................................................................................................................tgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaagcgtaggttttgcaatacactgataacgaacaagttatgcaatagttatgtttgtgaaaaatatttaca......................................................................................................................................................................... Subject: pint_PI1051_PI1052|hypothetical protein:fructose-1, 6-bisphosphatase|POSITIVE:POSITIVE|[970289,970631]|343 HSP 1 e-value: 1.0E-16 bit: 89.7 Len: 105 Query Start:226 Query End:330 Subject Strand: NEGATIVE Subject Start: 28 Subject End: 132 .................................................................................................................................................................................................................................tttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgat...................................................................................................................................................................................................................... .................................................................................................................................................................................................................................tttgacgttgcgaaagcggctcttttacaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatgcaaaacaataggttttgtaaagcattgat...................................................................................................................................................................................................................... Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 4.0E-16 bit: 87.7 Len: 196 Query Start:190 Query End:385 Subject Strand: POSITIVE Subject Start: 188 Subject End: 383 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttacatctttgttgc............................................................................................................................................................... .............................................................................................................................................................................................tgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattagtttgttatgcgataggtattgttgtgaaaaatatttacaccattgttgc............................................................................................................................................................... Subject: pint_PI1937_PI1938|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1891147,1891993]|847 HSP 1 e-value: 6.0E-15 bit: 83.8 Len: 130 Query Start:192 Query End:321 Subject Strand: POSITIVE Subject Start: 507 Subject End: 636 ...............................................................................................................................................................................................taaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaa............................................................................................................................................................................................................................... ...............................................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaa............................................................................................................................................................................................................................... Subject: pint_PI1577_PI1578|conserved hypothetical protein:rod shape-determining protein|POSITIVE:POSITIVE|[1503940,1504327]|388 HSP 1 e-value: 6.0E-15 bit: 83.8 Len: 106 Query Start:226 Query End:331 Subject Strand: POSITIVE Subject Start: 108 Subject End: 213 .................................................................................................................................................................................................................................tttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatg..................................................................................................................................................................................................................... .................................................................................................................................................................................................................................tttgacgttgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataacacattgatg..................................................................................................................................................................................................................... Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 105 Query Start:226 Query End:330 Subject Strand: NEGATIVE Subject Start: 398 Subject End: 502 .................................................................................................................................................................................................................................tttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgat...................................................................................................................................................................................................................... .................................................................................................................................................................................................................................tttgacgttgcgaaagcggctgttttgcgaggtaaaacctacgcttttgccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaacacgttgat...................................................................................................................................................................................................................... Subject: pint_PI2056_PI2057|conserved hypothetical protein:conserved hypothetical protein; possible metal-dependent membrane protease|POSITIVE:POSITIVE|[2014489,2015078]|590 HSP 1 e-value: 9.0E-14 bit: 79.8 Len: 100 Query Start:226 Query End:325 Subject Strand: POSITIVE Subject Start: 380 Subject End: 479 .................................................................................................................................................................................................................................tttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaataca........................................................................................................................................................................................................................... .................................................................................................................................................................................................................................tttgacgttgcgaaagcggctcttttgtaatgcaaaacttacgcttttaccatgcaaaacagccgcttttggaatgcgaaacaataggttttgtaataca........................................................................................................................................................................................................................... Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 9.0E-14 bit: 79.8 Len: 52 Query Start:190 Query End:241 Subject Strand: POSITIVE Subject Start: 229 Subject End: 280 .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaag............................................................................................................................................................................................................................................................................................................... .............................................................................................................................................................................................tgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaag............................................................................................................................................................................................................................................................................................................... HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 57 Query Start:238 Query End:294 Subject Strand: NEGATIVE Subject Start: 277 Subject End: 333 .............................................................................................................................................................................................................................................aaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttt.......................................................................................................................................................................................................................................................... .............................................................................................................................................................................................................................................aaagcggctgttttgcaaggtaaaagagccgcttttggcgtgcaaaacctacgcttt.......................................................................................................................................................................................................................................................... Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 1.0E-12 bit: 75.8 Len: 150 Query Start:226 Query End:375 Subject Strand: NEGATIVE Subject Start: 274 Subject End: 423 .................................................................................................................................................................................................................................tttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatacattgatgtatagatagttatgcaatagtttcccttgtgaaaaatatttaca......................................................................................................................................................................... .................................................................................................................................................................................................................................tttgacgttgcgaaagcagctcttttgcaacgcaaaacctatgcttttaccgtgcaaaacagccgcttttaggatgcaaaacaataggttttgtaacgcactgatgattaggctgttatgcgaaaatttttcttgtgaaaaatatttaca......................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAGAUACUAAAGAGAGUUGUAAGUACAAGAAUGCACAGUUAAAAAGGUAUUUAAGUGAAUUGGAAAAGACUCUUGCCUCCUUCAAUUAAUGUUAAUUCGGUAUAAGAAAACAGGUUGAGUGGGCUGUCUUGUAGGUUCUUUCAGCAAGCCUCUCUUUAAUAAAACAAUGAGAACUCUUCUAUUUAAAUAUGUAAAAAUAAUUCCGUUAAAAAGUAAUAACUGCGCUUUGACAUUGCGAAAGUGGCUGUUUUGCAACGCAAAACAGCCGCUUUUAUCGUGUAAAACCUACGCUUUUGGAAUGCAAAACAAUAGGUUUUGUAAUACAUUGAUGUAUAGAUAGUUAUGCAAUAGUUUCCCUUGUGAAAAAUAUUUACAUCUUUGUUGCUUUCUUUUCGUCGAAAACCAACGUUAGUUCGGGGUAAGAAUUUGCCCGAGAUACUUCGCUUUUUAAAUUAUAAGCAUAUUUUUAAAAGUAGGUGAGCAAGCUAUUUGACAAGUAAUAUAGCUAAGUGCUUCUAUCUGUCAAAGACAGAUUCUUUCGUUA ...........(((((...........((((.((((.....(((((((....(((((..((((...(((.(((((((((....((((((((((..(((((...(((((.....((((((.(((((........))))).))))))..........................((((..(((((......(((((......(((((((((((..(((.....)))..)))))).....(((((((((((((((((...)))))))))))))))))...(((((.....)))))....)))))(((((((.....)))))))..)))))......))))).))))..(((((((.......((((((.....))))))...))))))).)))))....)))))....)))))))))).))))))))).)))..))))..))))).)))))))........((((((((.....((((((.(.....).)))))).......))))).)))..)))))))).((((((...))))))..))))).... (-135.50) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAACGAAAGAAUCUGUCUUUGACAGAUAGAAGCACUUAGCUAUAUUACUUGUCAAAUAGCUUGCUCACCUACUUUUAAAAAUAUGCUUAUAAUUUAAAAAGCGAAGUAUCUCGGGCAAAUUCUUACCCCGAACUAACGUUGGUUUUCGACGAAAAGAAAGCAACAAAGAUGUAAAUAUUUUUCACAAGGGAAACUAUUGCAUAACUAUCUAUACAUCAAUGUAUUACAAAACCUAUUGUUUUGCAUUCCAAAAGCGUAGGUUUUACACGAUAAAAGCGGCUGUUUUGCGUUGCAAAACAGCCACUUUCGCAAUGUCAAAGCGCAGUUAUUACUUUUUAACGGAAUUAUUUUUACAUAUUUAAAUAGAAGAGUUCUCAUUGUUUUAUUAAAGAGAGGCUUGCUGAAAGAACCUACAAGACAGCCCACUCAACCUGUUUUCUUAUACCGAAUUAACAUUAAUUGAAGGAGGCAAGAGUCUUUUCCAAUUCACUUAAAUACCUUUUUAACUGUGCAUUCUUGUACUUACAACUCUCUUUAGUAUCUA .(((((....(((((((...))))))).((.(((...((((((............))))))))))).....((((((.(((((((...(((((((.....(((.......(((((...........)))))....((((((((((((........)))))).(((..((((((...........(((((....)).)))............))))))..))).....(((((((((.(((((........))))))))))))))...(((...(((.(((((((((((...))))))))))).)))))))))))).....))).((((........)))).))))))).....)))))))...))))))........))))).((((((((((((.(((.....)))....(((((((..((.((.......(((((((.......)))..))))..(((((.(((((((....))))))).)))))....................)).))..))))))).......)))))))))))).... (-119.00) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 848 310 261 218 169 pint:PI2111|5end_conserved_hypothetical_protein_2062771..2063001_POSITIVE 841 310 261 119 70 pint:PI0851|5end_hypothetical_protein_784310..784540_POSITIVE 841 310 261 119 70 pint:PI0841|5end_hypothetical_protein_775406..775636_POSITIVE 822 270 221 189 140 pint:PI0159|5end_hypothetical_protein_151273..151503_POSITIVE 822 270 221 101 52 pint:PI0157|5end_hypothetical_protein_151185..151415_POSITIVE 815 310 261 75 26 pint:PI0755|5end_hypothetical_protein_686691..686921_POSITIVE 794 270 221 178 129 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 789 310 264 64 18 pint:PI0200|5end_hypothetical_protein_191545..191775_POSITIVE 776 279 231 61 13 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 776 279 231 203 155 pint:PI1486|5end_alginate_O-acetylation_protein_1405507..1405737_POSITIVE 776 309 264 63 18 pint:PI0182|5end_hypothetical_protein_174093..174323_POSITIVE 765 270 221 52 3 pint:PI1567|5end_hypothetical_protein_1489229..1489459_POSITIVE 731 259 211 231 183 pint:PI0007|5end_hypothetical_protein_6417..6647_POSITIVE 722 270 221 183 134 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 686 270 221 101 52 pint:PI0055|5end_hypothetical_protein_54815..55045_POSITIVE 685 290 241 226 179 pint:PI0842|5end_5-formyltetrahydrofolate_cyclo-ligase_775533..775763_POSITIVE 684 340 291 94 45 pint:PI0004|5end_hypothetical_protein_6199..6429_POSITIVE 679 310 264 64 18 pint:PI1733|5end_hypothetical_protein_1652160..1652390_POSITIVE 667 279 231 61 13 pint:PI1934|5end_hypothetical_protein_1882363..1882593_POSITIVE 667 279 231 69 21 pint:PI1168|5end_hypothetical_protein_1089696..1089926_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 822 270 221 134 85 pint:PI0158|3end_hypothetical_protein_151298..151448_POSITIVE 745 270 221 134 85 pint:PI0004|3end_hypothetical_protein_6389..6539_POSITIVE 733 290 241 148 99 pint:PI0182|3end_hypothetical_protein_174277..174427_POSITIVE 704 279 231 143 95 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 667 279 231 143 95 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 657 270 221 138 89 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 655 320 271 57 8 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE 651 320 271 144 95 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 651 320 271 57 8 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 651 320 271 51 2 pint:PI0669|3end_hypothetical_protein_611147..611297_POSITIVE 651 320 271 85 36 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 641 270 221 134 85 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 636 279 233 117 71 pint:PI1356|3end_hypothetical_protein_1273340..1273490_POSITIVE 626 320 271 144 95 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 625 279 231 143 95 pint:PI2011|3end_hypothetical_protein_1970730..1970880_POSITIVE 621 320 271 53 4 pint:PI1051|3end_hypothetical_protein_970228..970378_POSITIVE 613 270 221 144 95 pint:PI1601|3end_hypothetical_protein_1530454..1530604_POSITIVE 613 270 221 144 95 pint:PI1076|3end_hypothetical_protein_999065..999215_POSITIVE 604 270 221 134 85 pint:PI0200|3end_hypothetical_protein_191735..191885_POSITIVE 601 263 223 148 108 pint:PI1905|3end_hypothetical_protein_1847854..1848004_POSITIVE