Origin IGS: taaacagaaaatagacggataaaaagatattaggtggttttcgtttttaaatgggaaccacctattattaacgtaagttcggcacacgaaagcaggttgagcaggcaaaccttgcaggtatttcttagcaagcccctaactgaaatagtgagagttttttggtttaatcttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgatggttaggtggttaagcagtaact .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 agttactgcttaaccacctaaccatcagcgcattacaaaacctattgttttgcgttccaaaagcggctgttttgcacggtaaaagcgtaggttttgcaatgcaaaagagccgctttcgcaatgccaaagcgcagttatcactttttaacggaattatctttacaagattaaaccaaaaaactctcactatttcagttaggggcttgctaagaaatacctgcaaggtttgcctgctcaacctgctttcgtgtgccgaacttacgttaataataggtggttcccatttaaaaacgaaaaccacctaatatctttttatccgtctattttctgttta Mask Tandem Repeat Region ================================================ taaacagaaaatagacggataaaaagatattaggtggttttcgtttttaaatgggaaccacctattattaacgtaagttcggcacacgaaagcaggttgagcaggcaaaccttgcaggtatttcttagcaagcccctaactgaaatagtgagagttttttggtttaatcttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgatggttaggtggttaagcagtaact Find is-nt database================================================ Query_seq: PI0990:PI0991|PI0990:PI0991:GDP-mannose 4,6-dehydratase:conserved hypothetical protein:->->:915115..915448 334 taaacagaaaatagacggataaaaagatattaggtggttttcgtttttaaatgggaaccacctattattaacgtaagttcggcacacgaaagcaggttgagcaggcaaaccttgcaggtatttcttagcaagcccctaactgaaatagtgagagttttttggtttaatcttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgatggttaggtggttaagcagtaact Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: PI0990:PI0991|PI0990:PI0991:GDP-mannose 4,6-dehydratase:conserved hypothetical protein:->->:915115..915448 334 taaacagaaaatagacggataaaaagatattaggtggttttcgtttttaaatgggaaccacctattattaacgtaagttcggcacacgaaagcaggttgagcaggcaaaccttgcaggtatttcttagcaagcccctaactgaaatagtgagagttttttggtttaatcttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgatggttaggtggttaagcagtaact Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: PI0990:PI0991|PI0990:PI0991:GDP-mannose 4,6-dehydratase:conserved hypothetical protein:->->:915115..915448 334 taaacagaaaatagacggataaaaagatattaggtggttttcgtttttaaatgggaaccacctattattaacgtaagttcggcacacgaaagcaggttgagcaggcaaaccttgcaggtatttcttagcaagcccctaactgaaatagtgagagttttttggtttaatcttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgatggttaggtggttaagcagtaact Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 taaacagaaaatagacggataaaaagatattaggtggttttcgtttttaaatgggaaccacctattattaacgtaagttcggcacacgaaagcaggttgagcaggcaaaccttgcaggtatttcttagcaagcccctaactgaaatagtgagagttttttggtttaatcttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgatggttaggtggttaagcagtaact Predict ORF larger than 30AA ================================================ Protein_Len: 30 Strand: + Start: 201 End: 290 ........................................................................................................................................................................................................ M R F G I A K A A L L H C K T Y A F T V Q N S R F W N A K Q ............................................ Protein_Len: 38 Strand: + Start: 194 End: 307 ................................................................................................................................................................................................. M I T A L W H C E S G S F A L Q N L R F Y R A K Q P L L E R K T I G F V M R ........................... Protein_Len: 60 Strand: + Start: 34 End: 333 ................................. M V F V F K W E P P I I N V S S A H E S R L S R Q T L Q V F L S K P L T E I V R V F W F N L V K I I P L K S D N C A L A . Protein_Len: 60 Strand: - Start: 33 End: 329 ................................ L T K Q N L R T F I I G N F L S L Q A K A N R F R S K Q M A F G V S K G H L V A A K P V C F L L N Q L A S I T L H N L M ..... Protein_Len: 39 Strand: - Start: 1 End: 117 L C F I S P Y F S I L H N E N K F P F W R N N V Y T R C V F A P Q A P L G Q M ......................................................................................................................................................................................................................... taaacagaaaatagacggataaaaagatattaggtggttttcgtttttaaatgggaaccacctattattaacgtaagttcggcacacgaaagcaggttgagcaggcaaaccttgcaggtatttcttagcaagcccctaactgaaatagtgagagttttttggtttaatcttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgatggttaggtggttaagcagtaact Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ taaacagaaaatagacggataaaaagatattaggtggttttcgtttttaaatgggaaccacctattattaacgtaagttcggcacacgaaagcaggttgagcaggcaaaccttgcaggtatttcttagcaagcccctaactgaaatagtgagagttttttggtttaatcttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgatggttaggtggttaagcagtaact Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 89 HP_score: -11.9 Tail_Score: -3.6579 Start: 31 End: 64 Full_Region: CGGATAAAAAGATAT TAGGTGGTTTTCGTT TTTA AATGGGAACCACCTA TTATTAACGTAAGTT ..............................TAGGTGGTTTTCGTTTTTAAATGGGAACCACCTA.............................................................................................................................................................................................................................................................................. TransTerm Strand: + Conf: 100 HP_score: -13.4 Tail_Score: -4.07568 Start: 222 End: 272 Full_Region: TTTGGCATTGCGAAA GCGGCTCTTTTGCATTGCAAAACC TAC GCTTTTACCGTGCAAAACAGCCGC TTTTGGAACGCAAAA .............................................................................................................................................................................................................................GCGGCTCTTTTGCATTGCAAAACCTACGCTTTTACCGTGCAAAACAGCCGC.............................................................. TransTerm Strand: - Conf: 95 HP_score: -13.4 Tail_Score: -3.57144 Start: 222 End: 272 Full_Region: ttttgcgttccaaaa gcggctgttttgcacggtaaaagc gta ggttttgcaatgcaaaagagccgc tttcgcaatgccaaa .............................................................................................................................................................................................................................gcggctgttttgcacggtaaaagcgtaggttttgcaatgcaaaagagccgc.............................................................. Find igs database================================================ Query_seq: PI0990:PI0991|PI0990:PI0991:GDP-mannose 4,6-dehydratase:conserved hypothetical protein:->->:915115..915448 334 taaacagaaaatagacggataaaaagatattaggtggttttcgtttttaaatgggaaccacctattattaacgtaagttcggcacacgaaagcaggttgagcaggcaaaccttgcaggtatttcttagcaagcccctaactgaaatagtgagagttttttggtttaatcttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgatggttaggtggttaagcagtaact Intra-Species Hit: Count: 53 Min: 1 Max: 334 Len: 334 Subject: pint_PI0990_PI0991|GDP-mannose 4,6-dehydratase:conserved hypothetical protein|POSITIVE:POSITIVE|[915115,915448]|334 HSP 1 e-value: 0.0 bit: 662.0 Len: 334 Query Start:1 Query End:334 Subject Strand: POSITIVE Subject Start: 1 Subject End: 334 taaacagaaaatagacggataaaaagatattaggtggttttcgtttttaaatgggaaccacctattattaacgtaagttcggcacacgaaagcaggttgagcaggcaaaccttgcaggtatttcttagcaagcccctaactgaaatagtgagagttttttggtttaatcttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgatggttaggtggttaagcagtaact taaacagaaaatagacggataaaaagatattaggtggttttcgtttttaaatgggaaccacctattattaacgtaagttcggcacacgaaagcaggttgagcaggcaaaccttgcaggtatttcttagcaagcccctaactgaaatagtgagagttttttggtttaatcttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgatggttaggtggttaagcagtaact Subject: pint_PI2178_PI0001|1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, GcpE:possible Ton-B receptor|POSITIVE:POSITIVE|[1,539]|539 HSP 1 e-value: 7.0E-69 bit: 262.0 Len: 188 Query Start:139 Query End:326 Subject Strand: POSITIVE Subject Start: 82 Subject End: 269 ..........................................................................................................................................actgaaatagtgagagttttttggtttaatcttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgatggttaggtggttaag........ ..........................................................................................................................................actgaaacagtgagagattttctgtttaattttgtaaagataattctgttaaaaactgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttataatgcgttgatggttagatagttaag........ Subject: pint_PI0010_PI0011|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[11740,12281]|542 HSP 1 e-value: 2.0E-66 bit: 254.0 Len: 148 Query Start:170 Query End:317 Subject Strand: POSITIVE Subject Start: 52 Subject End: 199 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgatggttag................. .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatacgctgatggttag................. Subject: pint_PI1499_PI1500|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1420241,1420765]|525 HSP 1 e-value: 7.0E-66 bit: 252.0 Len: 159 Query Start:144 Query End:302 Subject Strand: POSITIVE Subject Start: 124 Subject End: 282 ...............................................................................................................................................aatagtgagagttttttggtttaatcttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................ ...............................................................................................................................................aataatgagagtttttaggtttaactttgtaaagataattccgttaaaaagtgataaccgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................ Subject: pint_PI1494_PI1495|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1414029,1414571]|543 HSP 1 e-value: 2.0E-60 bit: 234.0 Len: 158 Query Start:141 Query End:298 Subject Strand: POSITIVE Subject Start: 172 Subject End: 329 ............................................................................................................................................tgaaatagtgagagttttttggtttaatcttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt.................................... ............................................................................................................................................tgaaatagtgggagtttttccgcttaactttgtaaagataattccgttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgtttttggaacgcaaaacaataggtttt.................................... Subject: pint_PI0780_PI0781|DNA gyrase, subunit A (DNA topoisomerase (ATP-hydrolyzing)):UDP-glucose/GDP-mannose dehydrogenase family; probable UDP-glucose 6-dehydrogenase|POSITIVE:POSITIVE|[718574,719399]|826 HSP 1 e-value: 2.0E-60 bit: 234.0 Len: 142 Query Start:170 Query End:311 Subject Strand: POSITIVE Subject Start: 481 Subject End: 622 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgat....................... .........................................................................................................................................................................ttgtaaagataattctgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccatgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatgcgttgat....................... Subject: pint_PI0412_PI0413|primosomal protein N', replication factor Y:outer membrane protein|POSITIVE:POSITIVE|[382213,382552]|340 HSP 1 e-value: 2.0E-59 bit: 230.0 Len: 136 Query Start:170 Query End:305 Subject Strand: NEGATIVE Subject Start: 90 Subject End: 225 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgc............................. .........................................................................................................................................................................ttgtaaagataattctgttaaaaactgataactgcgctttggcattgcgaaagcggctcttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgcaatgc............................. Subject: pint_PI1029_PI1030|seryl-tRNA synthetase:biotin carboxyl carrier protein|POSITIVE:POSITIVE|[947266,947985]|720 HSP 1 e-value: 4.0E-58 bit: 226.0 Len: 142 Query Start:170 Query End:311 Subject Strand: POSITIVE Subject Start: 311 Subject End: 452 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgat....................... .........................................................................................................................................................................ttgtaaagataatttctttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtcttgtaatgcgttgat....................... Subject: pint_PI0141_PI0142|glutamine amidotransferase involved in pyridoxine biosynthesis:DNA-binding protein|POSITIVE:POSITIVE|[133369,133978]|610 HSP 1 e-value: 2.0E-56 bit: 220.0 Len: 186 Query Start:125 Query End:310 Subject Strand: POSITIVE Subject Start: 123 Subject End: 308 ............................................................................................................................ttagcaagc-ccctaactgaaatagtgagagttttttggtttaatcttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctga........................ ............................................................................................................................ttagcaagctccctaa-tgaaacagtgagcttttttttgtttcgttttgtaaagataattctcttaaaaattgataactgcgttttgacattgcgaaagcggctgttttgcgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctga........................ Subject: pint_PI1878_PI1879|hypothetical protein:uracil phosphoribosyltransferase|POSITIVE:POSITIVE|[1820222, 1820810]|589 HSP 1 e-value: 9.0E-56 bit: 218.0 Len: 142 Query Start:170 Query End:311 Subject Strand: NEGATIVE Subject Start: 139 Subject End: 280 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgat....................... .........................................................................................................................................................................ttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgtaaaacaataggttttgtaaggcgttgat....................... Subject: pint_PI2172_PI2174|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2114052,2114384]|333 HSP 1 e-value: 6.0E-54 bit: 212.0 Len: 159 Query Start:170 Query End:328 Subject Strand: NEGATIVE Subject Start: 65 Subject End: 223 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgatggttaggtggttaagca...... .........................................................................................................................................................................ttgtaaagataattctgttaaaaactgataactgcgctttgacgttgcgaaagcggctcttttacgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgtaatacgttgatgattagatagttaagca...... Subject: pint_PI1408_PI1409|glucose-1-phosphate thymidylyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1329822,1330988]|1167 HSP 1 e-value: 6.0E-54 bit: 212.0 Len: 171 Query Start:141 Query End:311 Subject Strand: NEGATIVE Subject Start: 684 Subject End: 854 ............................................................................................................................................tgaaatagtgagagttttttggtttaatcttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgat....................... ............................................................................................................................................tgaaacagtgagagttatttcatttaattttgtaaaaataattctgttaaaaagtgataactgtactttggcgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaatacaaaacaataggttttgtaatgagctgat....................... Subject: pint_PI1503_PI1504|30S ribosomal protein S15:non-specific DNA-binding protein|POSITIVE:POSITIVE|[1423841,1424457]|617 HSP 1 e-value: 2.0E-53 bit: 210.0 Len: 134 Query Start:170 Query End:303 Subject Strand: POSITIVE Subject Start: 148 Subject End: 281 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat............................... .........................................................................................................................................................................ttgtaaagataattctcttaaaaaatgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat............................... Subject: pint_PI0892_PI0893|acyl-ACP thioesterase:outer membrane protein 41 precursor|POSITIVE:POSITIVE|[824000,824552]|553 HSP 1 e-value: 9.0E-53 bit: 208.0 Len: 133 Query Start:170 Query End:302 Subject Strand: NEGATIVE Subject Start: 251 Subject End: 383 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................ .........................................................................................................................................................................ttgtaaagataattctcttaaaaagtgataactgcgttttgacattgcgaaagcggctgttttgcgttgcaaaacctacgcttttaccgtgcaaaacagccacttttggaacgcaaaacaataggttttgtaa................................ Subject: pint_PI1485_PI1486|hypothetical protein:alginate O-acetylation protein|POSITIVE:POSITIVE|[1405400,1405646]|247 HSP 1 e-value: 1.0E-51 bit: 204.0 Len: 155 Query Start:170 Query End:324 Subject Strand: NEGATIVE Subject Start: 72 Subject End: 226 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgatggttaggtggtta.......... .........................................................................................................................................................................ttgtaaagataattctgttaaaaactgataactgcgttttgacattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgcaatacgctgacagtaaggtggtta.......... Subject: pint_PI1379_PI1380|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1302353,1302726]|374 HSP 1 e-value: 2.0E-50 bit: 200.0 Len: 133 Query Start:170 Query End:302 Subject Strand: POSITIVE Subject Start: 61 Subject End: 193 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................ .........................................................................................................................................................................ttgtaaagataattctgttaaaaagtgacaactgcgctttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttagaatgcaaaacaataggttttgtaa................................ Subject: pint_PI0770_PI0771|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[706415,706663]|249 HSP 1 e-value: 2.0E-50 bit: 200.0 Len: 129 Query Start:170 Query End:298 Subject Strand: NEGATIVE Subject Start: 111 Subject End: 239 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt.................................... .........................................................................................................................................................................ttgtaaaaataattccgttaaaaagcgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.................................... Subject: pint_PI1174_PI1175|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1097103,1097511]|409 HSP 1 e-value: 9.0E-50 bit: 198.0 Len: 140 Query Start:172 Query End:311 Subject Strand: POSITIVE Subject Start: 105 Subject End: 244 ...........................................................................................................................................................................gtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgat....................... ...........................................................................................................................................................................gtaaagatattttccttaaaaagtgataactgcgctttgacgttgcgaaagcggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgcaatgcgttgat....................... Subject: pint_PI0787_PI0788|glycosyltransferase:3-methyladenine DNA glycosylase (DNA-3-methyladenine glycosylase I)|POSITIVE:POSITIVE|[725854,726291]|438 HSP 1 e-value: 3.0E-49 bit: 196.0 Len: 135 Query Start:165 Query End:299 Subject Strand: NEGATIVE Subject Start: 304 Subject End: 438 ....................................................................................................................................................................taatcttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg................................... ....................................................................................................................................................................taattttgtaaagataattctcttaaaaagtgataactgcgctttgacgttgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg................................... Subject: pint_PI0680_PI0682|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[618694,619111]|418 HSP 1 e-value: 1.0E-48 bit: 194.0 Len: 130 Query Start:170 Query End:299 Subject Strand: POSITIVE Subject Start: 116 Subject End: 245 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg................................... .........................................................................................................................................................................ttgtaaagattattctgttaaaaagcgataactgcgctttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttagcgtgcaaaacagccgcttttggaatgcaaaacaataggttttg................................... Subject: pint_PI0794_PI0796|long-chain-fatty-acid--CoA ligase:competence protein|POSITIVE:POSITIVE|[732926,733463]|538 HSP 1 e-value: 2.0E-47 bit: 190.0 Len: 148 Query Start:170 Query End:317 Subject Strand: POSITIVE Subject Start: 187 Subject End: 334 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgatggttag................. .........................................................................................................................................................................ttgtaaagataattctcttaaaaattgataactgcgctttggcgttgcgaaagcggctcttttgtgctgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcgaaacaataggttttgtaaggcgttgatgattag................. Subject: pint_PI2045_PI2046|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1998784,1999169]|386 HSP 1 e-value: 8.0E-47 bit: 188.0 Len: 143 Query Start:170 Query End:312 Subject Strand: POSITIVE Subject Start: 216 Subject End: 358 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgatg...................... .........................................................................................................................................................................ttgtaaagattattctcttaaaaagtgataactgcgttttgacgatgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatacactgatg...................... Subject: pint_PI1563_PI1564|thiol:disulfide interchange protein dsbD:surface antigen BspA|POSITIVE:POSITIVE|[1482876,1483594]|719 HSP 1 e-value: 3.0E-46 bit: 186.0 Len: 142 Query Start:170 Query End:311 Subject Strand: NEGATIVE Subject Start: 374 Subject End: 515 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgat....................... .........................................................................................................................................................................ttgtaaagataattctgatgaaaaatgataatttcgatttggcattgcgaaagcggctgttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaatgcgttgat....................... Subject: pint_PI2029_PI2030|DNA topoisomerase I:hypothetical protein|POSITIVE:POSITIVE|[1985315,1985740]|426 HSP 1 e-value: 5.0E-45 bit: 182.0 Len: 136 Query Start:170 Query End:305 Subject Strand: POSITIVE Subject Start: 143 Subject End: 278 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgc............................. .........................................................................................................................................................................ttgtaaagataattctcttaaaaagtgataactgcgctttgacattgcgaaagcggctcttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggttttataatgc............................. Subject: pint_PI1930_PI1931|conserved hypothetical protein; possible ankyrin repeat protein (eukaryotic-like):alpha glycan phosphorylase, maltodextrin phosphorylase|POSITIVE:POSITIVE|[1875115,1875595]|481 HSP 1 e-value: 8.0E-44 bit: 178.0 Len: 142 Query Start:170 Query End:311 Subject Strand: POSITIVE Subject Start: 115 Subject End: 256 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgat....................... .........................................................................................................................................................................ttgtaaagataatttctttgaaaaatggtaatttcgatttgacgttgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgttgat....................... Subject: pint_PI1271_PI1272|transcriptional regulator, AraC/XylS family:possible transcriptional regulator|POSITIVE:POSITIVE|[1191345,1191841]|497 HSP 1 e-value: 2.0E-41 bit: 170.0 Len: 118 Query Start:170 Query End:287 Subject Strand: POSITIVE Subject Start: 258 Subject End: 375 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaa............................................... .........................................................................................................................................................................ttgtaaatataattccgttaaaaagtgataactgcgctttaacgttgcgaaagcggttcttttgcgatgcaaaacctacgcttttaccgtacaaaacagccgcttttggaacgcaaaa............................................... Subject: pint_PI0574_PI0575|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[519505,519700]|196 HSP 1 e-value: 5.0E-39 bit: 163.0 Len: 142 Query Start:170 Query End:311 Subject Strand: POSITIVE Subject Start: 12 Subject End: 153 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgat....................... .........................................................................................................................................................................ttgtaaagataattccgaagaaaaatgataatttcgatttgacgttgcgaaagtggctcttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttgcaatgcaaaacaataggttttgtaatgcgttgat....................... Subject: pint_PI0023_PI0024|internalin-related protein:hypothetical protein|POSITIVE:POSITIVE|[28131,28517]|387 HSP 1 e-value: 2.0E-38 bit: 161.0 Len: 129 Query Start:170 Query End:298 Subject Strand: POSITIVE Subject Start: 217 Subject End: 345 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt.................................... .........................................................................................................................................................................ttgtaaagataatttcgctgaaaaacgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggtttt.................................... Subject: pint_PI1332_PI1333|aminotransferase, possible pyridoxal-phosphate-dependent aminotransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[1250627,1250916]|290 HSP 1 e-value: 1.0E-36 bit: 155.0 Len: 130 Query Start:170 Query End:299 Subject Strand: POSITIVE Subject Start: 93 Subject End: 222 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg................................... .........................................................................................................................................................................ttgtaaagataatttctttaaaaagtaataatttcgatttgacattgcgaaaacggctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggagtgcaaaacaataggttttg................................... Subject: pint_PI0051_PI0054|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[53449,54718]|1270 HSP 1 e-value: 1.0E-36 bit: 155.0 Len: 130 Query Start:170 Query End:299 Subject Strand: NEGATIVE Subject Start: 87 Subject End: 216 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg................................... .........................................................................................................................................................................ttgtaaagattatttctttagaaaatggtaatttcgatttgacattgcgaaagcggctcttttgcgatgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttg................................... Subject: pint_PI0210_PI0211|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[203859,204206]|348 HSP 1 e-value: 5.0E-36 bit: 153.0 Len: 137 Query Start:170 Query End:306 Subject Strand: POSITIVE Subject Start: 203 Subject End: 338 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcg............................ .........................................................................................................................................................................ttgtaaagataattctcttaaaaagtgataactgcgctttggcgttgcgaaagcggct-gtttgcgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatgcg............................ Subject: pint_PI0831_PI0832|hypothetical protein:sigma-54-dependent transcriptional regulator|POSITIVE:POSITIVE|[768509,768973]|465 HSP 1 e-value: 1.0E-33 bit: 145.0 Len: 129 Query Start:170 Query End:298 Subject Strand: NEGATIVE Subject Start: 179 Subject End: 307 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt.................................... .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaacgcaaaacaataggtttt.................................... HSP 2 e-value: 1.0E-8 bit: 61.9 Len: 35 Query Start:219 Query End:253 Subject Strand: POSITIVE Subject Start: 224 Subject End: 258 ..........................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgcttt................................................................................. ..........................................................................................................................................................................................................................aaagcggctgttttgcattgcaaaacctacgcttt................................................................................. Subject: pint_PI0191_PI0192|O-methyltransferase:conserved hypothetical protein|POSITIVE:POSITIVE|[181846,182270]|425 HSP 1 e-value: 4.0E-33 bit: 143.0 Len: 108 Query Start:204 Query End:311 Subject Strand: NEGATIVE Subject Start: 169 Subject End: 276 ...........................................................................................................................................................................................................cgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgat....................... ...........................................................................................................................................................................................................cgctttcgctttgcaatagcggctgttttgcgatgcaaaacctacgcttttaccgtgcaaaagagccgcttttggaacgcaaaacaataggttttgtaacgcgctgat....................... Subject: pint_PI0945_PI0946|sodium:solute symporter family protein:glutathione peroxidase|POSITIVE:POSITIVE|[877685,878112]|428 HSP 1 e-value: 2.0E-32 bit: 141.0 Len: 135 Query Start:170 Query End:304 Subject Strand: POSITIVE Subject Start: 81 Subject End: 215 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatg.............................. .........................................................................................................................................................................ttgtaaagataatttcgttgaaaagtggtaattgcgctttggcattgcgaaagcggctgttttgcgatgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaatg.............................. Subject: pint_PI2088_PI2089|conserved hypothetical protein; possible PAP2 superfamily protein:conserved hypothetical protein|POSITIVE:POSITIVE|[2045876,2046339]|464 HSP 1 e-value: 3.0E-31 bit: 137.0 Len: 136 Query Start:170 Query End:305 Subject Strand: POSITIVE Subject Start: 157 Subject End: 292 .........................................................................................................................................................................ttgtaaagataattccgttaa-aaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgc............................. .........................................................................................................................................................................ttgtaaagataattc-gttaagaaaacgataatttcgatttgacgttgcgaaagctgctgttttgcaacgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaatgcaaaacaataggttttataatgc............................. Subject: pint_PI1583_PI1584|phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR)/IMP cyclohydrolase (ATIC):A/G-specific adenine glycosylase|POSITIVE:POSITIVE|[1511261,1512037]|777 HSP 1 e-value: 3.0E-31 bit: 137.0 Len: 133 Query Start:170 Query End:302 Subject Strand: NEGATIVE Subject Start: 407 Subject End: 539 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................ .........................................................................................................................................................................ttgtaaagataattacattgaaaattgataatttcgttttgacgttgcgaaagcggctgttttgcgaggtaaaacctacgcttttgccgtgcaaaacagccgcttttggaatgcaaaacaataggttttgtaa................................ Subject: pint_PI1044_PI1045|excinuclease ABC, subunit A:cytidine/deoxycytidylate deaminase family protein|POSITIVE:POSITIVE|[964700,965243]|544 HSP 1 e-value: 3.0E-31 bit: 137.0 Len: 133 Query Start:171 Query End:303 Subject Strand: POSITIVE Subject Start: 190 Subject End: 322 ..........................................................................................................................................................................tgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat............................... ..........................................................................................................................................................................tgtaaaaataattccgttaaaaagtaataactgcgctttgacattgcgaaagtggctgttttgcaacgcaaaacagccgcttttatcgtgtaaaacctacgcttttggaatgcaaaacaataggttttgtaat............................... Subject: pint_PI1360_PI1361|conserved hypothetical protein:CTP synthase (UTP-ammonia lyase)|POSITIVE:POSITIVE|[1277656,1278384]|729 HSP 1 e-value: 1.0E-30 bit: 135.0 Len: 136 Query Start:170 Query End:305 Subject Strand: POSITIVE Subject Start: 193 Subject End: 328 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgc............................. .........................................................................................................................................................................ttgtaaagataatttcgttaaaaagtgataactgcactttgacgttgcgaaagcggctgttttacgatgcaaaacagccgcttttaccgtgcaaaacctacgcttttaggacgcaaaacaatagattttgtaatgc............................. Subject: pint_PI2051_PI2052|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[2007896,2008733]|838 HSP 1 e-value: 2.0E-29 bit: 131.0 Len: 149 Query Start:170 Query End:318 Subject Strand: NEGATIVE Subject Start: 312 Subject End: 460 .........................................................................................................................................................................ttgtaaagataattccgttaa-aaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgatggttagg................ .........................................................................................................................................................................ttgtaaagataattc-gttaagaaaacgataatttcgatttgacgttgcgaaagcagctcttttgcaacgcaaaacctatgcttttaccgtgcaaaacagccgcttttaggatgcaaaacaataggttttgtaacgcactgatgattagg................ Subject: pint_PI0195_PI0196|epimerase/reductase:hypothetical protein|POSITIVE:POSITIVE|[188263,188574]|312 HSP 1 e-value: 1.0E-27 bit: 125.0 Len: 103 Query Start:207 Query End:309 Subject Strand: POSITIVE Subject Start: 184 Subject End: 286 ..............................................................................................................................................................................................................tttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctg......................... ..............................................................................................................................................................................................................tttggcattgcgaaagcggctgttttgcatcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaatacgctg......................... Subject: pint_PI1370_PI1371|alkyl hydroperoxide reductase, subunit F:hypothetical protein|POSITIVE:POSITIVE|[1292237,1292498]|262 HSP 1 e-value: 4.0E-27 bit: 123.0 Len: 102 Query Start:165 Query End:266 Subject Strand: POSITIVE Subject Start: 158 Subject End: 259 ....................................................................................................................................................................taatcttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaac.................................................................... ....................................................................................................................................................................taatcttgtaaagataattctcttaaaaagtgataactgcgctttggcattgcaaaagcggctattttgcatcgcaaaacagccgcttttactgtgtaaaac.................................................................... Subject: pint_PI1909_PI1910|DNA gyrase, B subunit:hypothetical protein|POSITIVE:POSITIVE|[1855331,1855917]|587 HSP 1 e-value: 1.0E-24 bit: 115.0 Len: 126 Query Start:186 Query End:311 Subject Strand: NEGATIVE Subject Start: 334 Subject End: 459 .........................................................................................................................................................................................gttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgat....................... .........................................................................................................................................................................................gttaaaaagtgataactgcgctttgacattgcgaaagcgtaggttttgcgatgcaaaagcgccacttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgcaatgcgttgat....................... Subject: pint_PI1588_PI1589|DNA polymerase III, epsilon chain:conserved hypothetical protein|POSITIVE:POSITIVE|[1516991,1517497]|507 HSP 1 e-value: 4.0E-24 bit: 113.0 Len: 121 Query Start:170 Query End:290 Subject Strand: POSITIVE Subject Start: 228 Subject End: 348 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaa............................................ .........................................................................................................................................................................ttgtaaaaataattccgttaaaaagtgacaactgcgctttgacgttgcgaaagcgtaggttttgcacgccaaaagcggctcttttaccttgcaaaacagccgcttttggaacgcaaaacaa............................................ Subject: pint_PI1324_PI1325|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[1243086,1243554]|469 HSP 1 e-value: 4.0E-24 bit: 113.0 Len: 141 Query Start:163 Query End:303 Subject Strand: NEGATIVE Subject Start: 257 Subject End: 397 ..................................................................................................................................................................tttaatcttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat............................... ..................................................................................................................................................................tttaatattgtaaaaataattctgttaaaaagtgataactgcactttggcattgtaaaagcggctgttttgcatcgcaaaacagccgcttttggctggtaaaagagccgcttttacaatgtaaaacaataggttttgtaat............................... Subject: pint_PI1090_PI1091|tRNA uracil 5-methyltransferase:transcriptional regulator, AsnC family|POSITIVE:POSITIVE|[1015841,1016319]|479 HSP 1 e-value: 4.0E-24 bit: 113.0 Len: 129 Query Start:170 Query End:298 Subject Strand: POSITIVE Subject Start: 113 Subject End: 241 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt.................................... .........................................................................................................................................................................ttgtaaaaataattccgttaaaaagtgataactgccttttgacattgcaaaagcagctgttttacgatgcaaaacaaccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaataggtttt.................................... Subject: pint_PI0874_PI0875|conserved hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[810342,810747]|406 HSP 1 e-value: 6.0E-23 bit: 109.0 Len: 143 Query Start:170 Query End:312 Subject Strand: NEGATIVE Subject Start: 177 Subject End: 319 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatgcgctgatg...................... .........................................................................................................................................................................ttgtaaagataattcccttaaaaaaggataactgcgctttggcattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgtaaaacctacgcttttggaatgcaaaacaacacgttttataacacgctgatg...................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 35 Query Start:219 Query End:253 Subject Strand: POSITIVE Subject Start: 236 Subject End: 270 ..........................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgcttt................................................................................. ..........................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt................................................................................. Subject: pint_PI1391_PI1392|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1311755,1312040]|286 HSP 1 e-value: 1.0E-21 bit: 105.0 Len: 133 Query Start:170 Query End:302 Subject Strand: NEGATIVE Subject Start: 53 Subject End: 185 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................ .........................................................................................................................................................................ttgtaaagataattccgacgaaaaacggtaatttcgatttggcgttgcgaaagcggctgttttgcagcgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttgtaa................................ Subject: pint_PI1937_PI1938|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1891147,1891993]|847 HSP 1 e-value: 6.0E-20 bit: 99.6 Len: 130 Query Start:173 Query End:302 Subject Strand: POSITIVE Subject Start: 507 Subject End: 636 ............................................................................................................................................................................taaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaa................................ ............................................................................................................................................................................taaagataattctgttaaaaagcgataactgcgctttggcgttgcgaaagcgtaacttttgcacgccaaaagagccgcttttaccttgcaaaacctacgcttttagaacgtaaaacaataggctttgtaa................................ Subject: pint_PI1424_PI1425|probable peptidase family M48:conserved hypothetical protein|POSITIVE:POSITIVE|[1344105,1344627]|523 HSP 1 e-value: 4.0E-18 bit: 93.7 Len: 115 Query Start:190 Query End:304 Subject Strand: NEGATIVE Subject Start: 101 Subject End: 215 .............................................................................................................................................................................................aaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaatg.............................. .............................................................................................................................................................................................aaaaatgataatttcgatttggcattgcgaaagcggctgttttgcaacgcaaaacagccgcttttgccgtgtaaaacctacgcttttggaatgcaaaacaataggttttgcaatg.............................. Subject: pint_PI0962_PI0963|phosphoglycerate mutase:hypothetical protein|POSITIVE:POSITIVE|[892763,893337]|575 HSP 1 e-value: 1.0E-17 bit: 91.7 Len: 130 Query Start:170 Query End:299 Subject Strand: POSITIVE Subject Start: 146 Subject End: 275 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttg................................... .........................................................................................................................................................................ttgtaaagataattcgttgaaaaaatgataatttcgatttgacattgcgaaagcgtaggttttgcgttgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttg................................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 35 Query Start:219 Query End:253 Subject Strand: NEGATIVE Subject Start: 195 Subject End: 229 ..........................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgcttt................................................................................. ..........................................................................................................................................................................................................................aaagcggctcttttgcaacgcaaaacctacgcttt................................................................................. Subject: pint_PI0145_PI0146|secDF export membrane protein:transcription elongation factor|POSITIVE:POSITIVE|[139785,140477]|693 HSP 1 e-value: 4.0E-15 bit: 83.8 Len: 134 Query Start:170 Query End:303 Subject Strand: NEGATIVE Subject Start: 228 Subject End: 360 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat............................... .........................................................................................................................................................................ttgtaaagataattcattgaaaaac-gataatttcgatttggcattgcgaaagcgtaggttttgcaatgcaaaacagccgcttttaccgtgcaaaacctacacttttggaatgcaaaacaataggttttataat............................... HSP 2 e-value: 1.0E-8 bit: 61.9 Len: 35 Query Start:219 Query End:253 Subject Strand: POSITIVE Subject Start: 278 Subject End: 312 ..........................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgcttt................................................................................. ..........................................................................................................................................................................................................................aaagcggctgttttgcattgcaaaacctacgcttt................................................................................. Subject: pint_PI0932_PI0933|conserved hypothetical protein; possible hemin receptor:hypothetical protein|POSITIVE:POSITIVE|[865425,865839]|415 HSP 1 e-value: 1.0E-14 bit: 81.8 Len: 129 Query Start:170 Query End:298 Subject Strand: NEGATIVE Subject Start: 179 Subject End: 307 .........................................................................................................................................................................ttgtaaagataattccgttaaaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggtttt.................................... .........................................................................................................................................................................ttgtaaagataattttattaaaaagtggcaattgcgttttgacattgcaaaagcgtaggttttgcaatgcaaaagagccgcttttaccgtgcaaaacctacgcttttggaacgcgaaacaataggtttt.................................... HSP 2 e-value: 1.0E-11 bit: 71.9 Len: 36 Query Start:219 Query End:254 Subject Strand: POSITIVE Subject Start: 224 Subject End: 259 ..........................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt................................................................................ ..........................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgctttt................................................................................ Subject: pint_PI0854_PI0855|MiaB-like tRNA modifying enzyme:hypothetical protein|POSITIVE:POSITIVE|[788060,789233]|1174 HSP 1 e-value: 9.0E-13 bit: 75.8 Len: 114 Query Start:190 Query End:303 Subject Strand: POSITIVE Subject Start: 763 Subject End: 876 .............................................................................................................................................................................................aaaagtgataactgcgctttggcattgcgaaagcggctcttttgcattgcaaaacctacgcttttaccgtgcaaaacagccgcttttggaacgcaaaacaataggttttgtaat............................... .............................................................................................................................................................................................aaaaatgataatttcgatttggcgttgcgaaagcgtaggttttgcaacgcaaaacagccgcttttaccgtgcaaaacctacgcttttggaatgcaaaacaataggttttataat............................... HSP 2 e-value: 3.0E-6 bit: 54.0 Len: 35 Query Start:219 Query End:253 Subject Strand: NEGATIVE Subject Start: 792 Subject End: 826 ..........................................................................................................................................................................................................................aaagcggctcttttgcattgcaaaacctacgcttt................................................................................. ..........................................................................................................................................................................................................................aaagcggctgttttgcgttgcaaaacctacgcttt................................................................................. Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UAAACAGAAAAUAGACGGAUAAAAAGAUAUUAGGUGGUUUUCGUUUUUAAAUGGGAACCACCUAUUAUUAACGUAAGUUCGGCACACGAAAGCAGGUUGAGCAGGCAAACCUUGCAGGUAUUUCUUAGCAAGCCCCUAACUGAAAUAGUGAGAGUUUUUUGGUUUAAUCUUGUAAAGAUAAUUCCGUUAAAAAGUGAUAACUGCGCUUUGGCAUUGCGAAAGCGGCUCUUUUGCAUUGCAAAACCUACGCUUUUACCGUGCAAAACAGCCGCUUUUGGAACGCAAAACAAUAGGUUUUGUAAUGCGCUGAUGGUUAGGUGGUUAAGCAGUAACU .............((((((......((((.(((((((((..((((....))))..))))))))).))))...((..(((((((...(....)...)))))))..))..(((.....)))...((((.(((((.....(((..(((...(....)..)))..)))....))))).))))....)))))).....((..((((..(((((..((.((.(((((((((((.((((((((.(.((((.......)))).).)))))))).))))))))))).)).(((((((.....))))))).....))..).)))...)..)))).))....... (-101.40) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ AGUUACUGCUUAACCACCUAACCAUCAGCGCAUUACAAAACCUAUUGUUUUGCGUUCCAAAAGCGGCUGUUUUGCACGGUAAAAGCGUAGGUUUUGCAAUGCAAAAGAGCCGCUUUCGCAAUGCCAAAGCGCAGUUAUCACUUUUUAACGGAAUUAUCUUUACAAGAUUAAACCAAAAAACUCUCACUAUUUCAGUUAGGGGCUUGCUAAGAAAUACCUGCAAGGUUUGCCUGCUCAACCUGCUUUCGUGUGCCGAACUUACGUUAAUAAUAGGUGGUUCCCAUUUAAAAACGAAAACCACCUAAUAUCUUUUUAUCCGUCUAUUUUCUGUUUA ...........(((((((((.......((((((....((((((...((((((((((.(.(((((((((.(((((((..((((((.(...).))))))..))))))).))))))))).).)))).))))))((((.(((..(((..(((.((....((((.....))))....))......((((.(((.....))).))))..)))..)))..))).)))).))))))....((.......))....))))))..(((....))).....))))))))).........(((((((((.......(((......))).......))))).)))). (-81.54) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 938 250 201 51 2 pint:PI1694|5end_hypothetical_protein_1609717..1609947_POSITIVE 908 290 241 91 42 pint:PI2153|5end_hypothetical_protein_2099392..2099622_POSITIVE 908 290 241 63 14 pint:PI0061|5end_hypothetical_protein_60500..60730_POSITIVE 908 290 241 63 14 pint:PI0004|5end_hypothetical_protein_6199..6429_POSITIVE 891 270 221 71 22 pint:PI2002|5end_hypothetical_protein_1960662..1960892_POSITIVE 891 270 221 59 10 pint:PI1129|5end_hypothetical_protein_1055377..1055607_POSITIVE 891 270 221 202 153 pint:PI0771|5end_conserved_hypothetical_protein_706524..706754_POSITIVE 890 290 243 48 1 pint:PI1905|5end_hypothetical_protein_1847628..1847858_POSITIVE 882 250 201 212 163 pint:PI2003|5end_hypothetical_protein_1960823..1961053_POSITIVE 872 270 221 71 22 pint:PI1829|5end_hypothetical_protein_1769255..1769485_POSITIVE 864 250 201 100 51 pint:PI0055|5end_hypothetical_protein_54815..55045_POSITIVE 856 290 241 52 3 pint:PI0099|5end_hypothetical_protein_95530..95760_POSITIVE 852 270 221 71 22 pint:PI1076|5end_hypothetical_protein_998893..999123_POSITIVE 846 238 191 219 172 pint:PI0202|5end_DNA_helicase_191753..191983_POSITIVE 844 280 231 81 32 pint:PI1346|5end_hypothetical_protein_1260814..1261044_POSITIVE 844 280 231 207 158 pint:PI0788|5end_3-methyladenine_DNA_glycosylase_(DNA-3-methyladenine_glycosylase_I)_726152..726382_POSITIVE 838 270 221 71 22 pint:PI1601|5end_hypothetical_protein_1530282..1530512_POSITIVE 836 290 241 74 25 pint:PI1528|5end_hypothetical_protein_1449685..1449915_POSITIVE 836 290 241 52 3 pint:PI1057|5end_hypothetical_protein_977286..977516_POSITIVE 833 260 212 49 1 pint:PI2144|5end_hypothetical_protein_2091954..2092184_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 908 290 241 133 84 pint:PI1141|3end_hypothetical_protein_1069713..1069863_POSITIVE 891 270 221 54 5 pint:PI0996|3end_hypothetical_protein_920660..920810_POSITIVE 891 270 221 113 64 pint:PI0759|3end_hypothetical_protein_693998..694148_POSITIVE 886 260 211 143 94 pint:PI1814|3end_hypothetical_protein_1753233..1753383_POSITIVE 878 250 201 133 84 pint:PI0061|3end_hypothetical_protein_60690..60840_POSITIVE 846 238 191 121 74 pint:PI0200|3end_hypothetical_protein_191735..191885_POSITIVE 844 299 251 55 7 pint:PI0688|3end_hypothetical_protein_625750..625900_POSITIVE 844 299 251 49 1 pint:PI0669|3end_hypothetical_protein_611147..611297_POSITIVE 844 280 231 64 15 pint:PI0054|3end_hypothetical_protein_54829..54979_POSITIVE 843 268 221 151 104 pint:PI0689|3end_hypothetical_protein_625877..626027_POSITIVE 823 240 191 123 74 pint:PI0158|3end_hypothetical_protein_151298..151448_POSITIVE 812 260 211 143 94 pint:PI1340|3end_hypothetical_protein_1256872..1257022_POSITIVE 802 260 211 117 68 pint:PI1356|3end_hypothetical_protein_1273340..1273490_POSITIVE 784 300 251 56 7 pint:PI0186|3end_hypothetical_protein_178003..178153_POSITIVE 782 250 201 143 94 pint:PI1076|3end_hypothetical_protein_999065..999215_POSITIVE 768 250 202 143 95 pint:PI1601|3end_hypothetical_protein_1530454..1530604_POSITIVE 751 250 201 133 84 pint:PI0004|3end_hypothetical_protein_6389..6539_POSITIVE 748 250 201 137 88 pint:PI1922|3end_hypothetical_protein_1865454..1865604_POSITIVE 745 260 213 143 96 pint:PI0670|3end_hypothetical_protein_611280..611430_POSITIVE 712 300 251 52 3 pint:PI1051|3end_hypothetical_protein_970228..970378_POSITIVE